AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455130 MtrunA17_Chr8g0346911 97.122 139 4 0 1 139 98 236 1.13e-97 280
Msa1455130 MtrunA17_Chr8g0388331 63.235 136 50 0 1 136 75 210 5.87e-62 189
Msa1455130 MtrunA17_Chr4g0076551 57.664 137 58 0 1 137 91 227 4.39e-55 172
Msa1455130 MtrunA17_Chr4g0055421 57.353 136 58 0 1 136 75 210 4.41e-55 171
Msa1455130 MtrunA17_Chr3g0102821 57.664 137 58 0 1 137 90 226 1.40e-54 171
Msa1455130 MtrunA17_Chr5g0446931 56.934 137 59 0 1 137 90 226 9.20e-54 169
Msa1455130 MtrunA17_Chr1g0151621 58.955 134 55 0 1 134 114 247 2.36e-53 168
Msa1455130 MtrunA17_Chr2g0290771 53.285 137 64 0 1 137 55 191 2.72e-50 159
Msa1455130 MtrunA17_Chr3g0126801 70.297 101 30 0 38 138 6 106 2.40e-47 149
Msa1455130 MtrunA17_Chr2g0290781 50.360 139 69 0 1 139 95 233 8.48e-45 146
Msa1455130 MtrunA17_Chr4g0063121 45.652 138 75 0 1 138 32 169 1.21e-41 137
Msa1455130 MtrunA17_Chr8g0341941 51.515 132 64 0 1 132 120 251 2.26e-41 138
Msa1455130 MtrunA17_Chr2g0290751 55.085 118 53 0 1 118 93 210 2.86e-41 136
Msa1455130 MtrunA17_Chr2g0290761 54.237 118 54 0 1 118 93 210 1.15e-39 132
Msa1455130 MtrunA17_Chr8g0388311 52.439 82 39 0 58 139 1 82 4.85e-26 94.0
Msa1455130 MtrunA17_Chr5g0399931 55.738 61 27 0 58 118 1 61 3.99e-17 70.9
Msa1455130 MtrunA17_Chr3g0126811 63.415 41 15 0 1 41 76 116 2.95e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455130 AT5G24270.3 63.971 136 49 0 1 136 32 167 3.75e-64 193
Msa1455130 AT5G24270.5 63.971 136 49 0 1 136 54 189 8.93e-64 193
Msa1455130 AT5G24270.4 63.971 136 49 0 1 136 79 214 1.83e-63 193
Msa1455130 AT5G24270.1 63.971 136 49 0 1 136 79 214 1.83e-63 193
Msa1455130 AT5G24270.2 63.971 136 49 0 1 136 79 214 1.83e-63 193
Msa1455130 AT4G17615.2 56.618 136 59 0 1 136 33 168 5.83e-54 167
Msa1455130 AT4G33000.2 58.824 136 56 0 1 136 111 246 9.96e-54 169
Msa1455130 AT4G17615.4 56.618 136 59 0 1 136 75 210 1.29e-53 168
Msa1455130 AT4G17615.1 56.618 136 59 0 1 136 75 210 1.29e-53 168
Msa1455130 AT4G17615.5 56.618 136 59 0 1 136 75 210 1.29e-53 168
Msa1455130 AT4G33000.1 58.824 136 56 0 1 136 121 256 1.55e-53 169
Msa1455130 AT4G26570.2 56.204 137 60 0 1 137 94 230 2.05e-53 168
Msa1455130 AT4G26570.1 56.204 137 60 0 1 137 90 226 2.42e-53 168
Msa1455130 AT5G55990.1 56.934 137 59 0 1 137 90 226 2.38e-52 165
Msa1455130 AT5G55990.2 56.934 137 59 0 1 137 90 226 2.38e-52 165
Msa1455130 AT1G64480.2 58.824 136 56 0 1 136 79 214 2.67e-52 165
Msa1455130 AT1G64480.3 58.824 136 56 0 1 136 79 214 2.67e-52 165
Msa1455130 AT1G64480.1 58.824 136 56 0 1 136 79 214 2.67e-52 165
Msa1455130 AT5G47100.1 55.147 136 61 0 1 136 75 210 7.78e-52 164
Msa1455130 AT4G26560.1 52.555 137 65 0 1 137 78 214 1.26e-48 155
Msa1455130 AT4G17615.3 57.377 122 52 0 1 122 75 196 1.30e-46 151
Msa1455130 AT4G16350.2 53.846 130 60 0 1 130 84 213 8.97e-46 149
Msa1455130 AT4G16350.1 53.846 130 60 0 1 130 84 213 8.97e-46 149
Msa1455130 AT4G01420.1 52.713 129 61 0 1 129 74 202 1.73e-45 147
Msa1455130 AT1G64480.4 59.322 118 48 0 1 118 79 196 3.28e-44 144
Msa1455130 AT4G01420.2 53.390 118 55 0 1 118 74 191 1.33e-41 137
Msa1455130 AT4G33000.5 55.814 86 38 0 1 86 111 196 1.46e-27 102
Msa1455130 AT4G33000.4 57.317 82 35 0 1 82 111 192 2.64e-27 100
Msa1455130 AT4G33000.6 57.317 82 35 0 1 82 111 192 2.64e-27 100
Msa1455130 AT5G47100.2 50.000 84 42 0 1 84 75 158 6.79e-27 99.0

Find 57 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCACGCATTTAGTAATT+TGG 0.163718 tig0035590:-1327 None:intergenic
TTTGACCAGGCAGCAGATTT+TGG 0.184319 tig0035590:+1184 Msa1455130:three_prime_UTR
TTGTCTGCTTGAGGAGCTTT+AGG 0.234896 tig0035590:-118 None:intergenic
CATTATATTAGACGCCTTAA+TGG 0.237392 tig0035590:-1489 None:intergenic
GGATATGGTGTTGATGATTT+TGG 0.239699 tig0035590:+472 Msa1455130:CDS
AGACCATAGTACACTTTCTA+TGG 0.259663 tig0035590:+1028 Msa1455130:three_prime_UTR
TTCTAATAAGCATTGATATA+TGG 0.263606 tig0035590:-976 None:intergenic
TATCAATGCTTATTAGAAAT+TGG 0.284377 tig0035590:+981 Msa1455130:three_prime_UTR
TAGTGAAAATTGTGAATTGC+AGG 0.313327 tig0035590:-1129 None:intergenic
TTCTGCGCTCAGCATAAAAC+TGG 0.328781 tig0035590:-861 None:intergenic
TAAATTCGCCAAACTCTATA+TGG 0.330475 tig0035590:-72 None:intergenic
GGCGAATTTATCAGATCTTT+AGG 0.334304 tig0035590:+85 Msa1455130:CDS
ACACTTTCTATGGGGAAGTT+TGG 0.361565 tig0035590:+1038 Msa1455130:three_prime_UTR
AAATTTACAGTTGAAGGATA+TGG 0.376424 tig0035590:+457 Msa1455130:intron
TAACTGAATTCTGACCATTA+AGG 0.382199 tig0035590:+1475 Msa1455130:three_prime_UTR
CACAACGGCCATATAGAGTT+TGG 0.395021 tig0035590:+64 Msa1455130:CDS
CATTCATGTAGTTTGTCGTT+TGG 0.395666 tig0035590:+1232 Msa1455130:three_prime_UTR
CTCATAAACAGAAAATTTGT+AGG 0.411703 tig0035590:+1371 Msa1455130:three_prime_UTR
AAACTACGATTGTGATTCTT+CGG 0.429750 tig0035590:-885 None:intergenic
GTCATGTTCTTGAGTAATGA+TGG 0.435791 tig0035590:-716 None:intergenic
TTATATGACTTGAGGCATAC+AGG 0.464058 tig0035590:+335 Msa1455130:CDS
TTTAAAACTTACATTAGATA+AGG 0.469690 tig0035590:-743 None:intergenic
AGCAGCAGATGAAGAATTTG+TGG 0.474533 tig0035590:+1531 Msa1455130:three_prime_UTR
GATATATGGTTATCAAAGGT+TGG 0.474970 tig0035590:-962 None:intergenic
TCCCCATAGAAAGTGTACTA+TGG 0.481327 tig0035590:-1031 None:intergenic
GAAGAATGGAGTGAATATGT+TGG 0.482908 tig0035590:+686 Msa1455130:CDS
TATCCGAGGTGTTTATTGCA+AGG 0.490386 tig0035590:+1083 Msa1455130:three_prime_UTR
AGTTTGTCGTTTGGAGCCGT+TGG 0.490956 tig0035590:+1241 Msa1455130:three_prime_UTR
TTGGAGCTGTTAGATGAAGA+TGG 0.504661 tig0035590:-1308 None:intergenic
CGACAAACTACATGAATGCT+AGG 0.516597 tig0035590:-1227 None:intergenic
GACCATAGTACACTTTCTAT+GGG 0.517895 tig0035590:+1029 Msa1455130:three_prime_UTR
AAGTGATTATAACACATTTG+AGG 0.519985 tig0035590:-1417 None:intergenic
CAAATGCAATGCATATAGAA+TGG 0.521321 tig0035590:+924 Msa1455130:three_prime_UTR
GTTTCTGAATTTCTTATCCG+AGG 0.531890 tig0035590:+1069 Msa1455130:three_prime_UTR
TAACATGATCTTTCGTGATG+TGG 0.536071 tig0035590:+1442 Msa1455130:three_prime_UTR
TGAATCCAAAATCTGCTGCC+TGG 0.544450 tig0035590:-1189 None:intergenic
AAATAGTGAAAATGCATGGA+GGG 0.546304 tig0035590:+1154 Msa1455130:three_prime_UTR
TGCAATGCATATAGAATGGT+CGG 0.548590 tig0035590:+928 Msa1455130:three_prime_UTR
CGTTTAGATTATATGACTTG+AGG 0.559102 tig0035590:+327 Msa1455130:CDS
CTTCATCTGCTGCTGATACA+CGG 0.560602 tig0035590:-1522 None:intergenic
TTTGGTTCTATCTGATGATG+TGG 0.562282 tig0035590:+505 Msa1455130:CDS
CATTGATATATGGTTATCAA+AGG 0.564986 tig0035590:-966 None:intergenic
TAAGAAATAGTGAAAATGCA+TGG 0.569281 tig0035590:+1150 Msa1455130:three_prime_UTR
TATGAGACTCATTGTGTAAG+CGG 0.570664 tig0035590:-1354 None:intergenic
ATAACAAAAGCATATTCAGA+AGG 0.604134 tig0035590:-1394 None:intergenic
ACTGTAAGGTCTTGATCCAA+CGG 0.605756 tig0035590:-1257 None:intergenic
GGTTGAAACAATTGTGGACA+AGG 0.615162 tig0035590:+526 Msa1455130:CDS
GAAACAGACACGAAAGGTGA+CGG 0.615254 tig0035590:+650 Msa1455130:CDS
TGATGTGGTTGAAACAATTG+TGG 0.635953 tig0035590:+520 Msa1455130:CDS
TCTGCGCTCAGCATAAAACT+GGG 0.668163 tig0035590:-860 None:intergenic
TTTCTAGAAACAGACACGAA+AGG 0.669410 tig0035590:+644 Msa1455130:CDS
AGGTTACATTGAGCGCGAAG+AGG 0.670430 tig0035590:+355 Msa1455130:CDS
AAGAAATTCAGAAACAACAA+CGG 0.674641 tig0035590:-1061 None:intergenic
GAAATAGTGAAAATGCATGG+AGG 0.677831 tig0035590:+1153 Msa1455130:three_prime_UTR
AAACCTTGCAATAAACACCT+CGG 0.687042 tig0035590:-1086 None:intergenic
ACCATAGTACACTTTCTATG+GGG 0.716957 tig0035590:+1030 Msa1455130:three_prime_UTR
TGAATGCTAGGAATGTGAGA+TGG 0.734975 tig0035590:-1215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTCTTATATATATATTT+TGG + tig0035590:605-624 Msa1455130:intron 10.0%
!!! GTTTCTTATATATATATTTT+GGG + tig0035590:606-625 Msa1455130:intron 10.0%
!!! TTTCTTATATATATATTTTG+GGG + tig0035590:607-626 Msa1455130:intron 10.0%
!!! AGTTTCTTATATATATATTT+TGG + tig0035590:605-624 Msa1455130:intron 10.0%
!!! GTTTCTTATATATATATTTT+GGG + tig0035590:606-625 Msa1455130:intron 10.0%
!!! TTTCTTATATATATATTTTG+GGG + tig0035590:607-626 Msa1455130:intron 10.0%
!!! TTCTTATATATATATTTTGG+GGG + tig0035590:608-627 Msa1455130:intron 15.0%
!!! TTTAAAACTTACATTAGATA+AGG - tig0035590:746-765 None:intergenic 15.0%
!!! TTCTTATATATATATTTTGG+GGG + tig0035590:608-627 Msa1455130:intron 15.0%
!!! TTTAAAACTTACATTAGATA+AGG - tig0035590:746-765 None:intergenic 15.0%
!!! TGACAATTGTTTTAATGTTT+TGG + tig0035590:425-444 Msa1455130:intron 20.0%
!! TAATGAAAATTTACAGTTGA+AGG + tig0035590:451-470 Msa1455130:intron 20.0%
!!! TCTTATATATATATTTTGGG+GGG + tig0035590:609-628 Msa1455130:intron 20.0%
!!! ACTTTTTGATTCTAATTTCA+GGG + tig0035590:820-839 Msa1455130:intron 20.0%
!!! TTCTAATAAGCATTGATATA+TGG - tig0035590:979-998 None:intergenic 20.0%
!! TATCAATGCTTATTAGAAAT+TGG + tig0035590:981-1000 Msa1455130:three_prime_UTR 20.0%
!!! TGACAATTGTTTTAATGTTT+TGG + tig0035590:425-444 Msa1455130:intron 20.0%
!! TAATGAAAATTTACAGTTGA+AGG + tig0035590:451-470 Msa1455130:intron 20.0%
!!! TCTTATATATATATTTTGGG+GGG + tig0035590:609-628 Msa1455130:intron 20.0%
!!! ACTTTTTGATTCTAATTTCA+GGG + tig0035590:820-839 Msa1455130:intron 20.0%
!!! TTCTAATAAGCATTGATATA+TGG - tig0035590:979-998 None:intergenic 20.0%
!! TATCAATGCTTATTAGAAAT+TGG + tig0035590:981-1000 Msa1455130:three_prime_UTR 20.0%
! AAATTTACAGTTGAAGGATA+TGG + tig0035590:457-476 Msa1455130:intron 25.0%
!! GAAAAATTGACTTAGAAGAA+TGG + tig0035590:672-691 Msa1455130:CDS 25.0%
!!! CACTTTTTGATTCTAATTTC+AGG + tig0035590:819-838 Msa1455130:intron 25.0%
! CATTGATATATGGTTATCAA+AGG - tig0035590:969-988 None:intergenic 25.0%
! AAGAAATTCAGAAACAACAA+CGG - tig0035590:1064-1083 None:intergenic 25.0%
! TAAGAAATAGTGAAAATGCA+TGG + tig0035590:1150-1169 Msa1455130:three_prime_UTR 25.0%
! ATTTCACGCATTTAGTAATT+TGG - tig0035590:1330-1349 None:intergenic 25.0%
! CTCATAAACAGAAAATTTGT+AGG + tig0035590:1371-1390 Msa1455130:three_prime_UTR 25.0%
!! ATAACAAAAGCATATTCAGA+AGG - tig0035590:1397-1416 None:intergenic 25.0%
! AAGTGATTATAACACATTTG+AGG - tig0035590:1420-1439 None:intergenic 25.0%
! AAATTTACAGTTGAAGGATA+TGG + tig0035590:457-476 Msa1455130:intron 25.0%
!! GAAAAATTGACTTAGAAGAA+TGG + tig0035590:672-691 Msa1455130:CDS 25.0%
!!! CACTTTTTGATTCTAATTTC+AGG + tig0035590:819-838 Msa1455130:intron 25.0%
! CATTGATATATGGTTATCAA+AGG - tig0035590:969-988 None:intergenic 25.0%
! AAGAAATTCAGAAACAACAA+CGG - tig0035590:1064-1083 None:intergenic 25.0%
! TAAGAAATAGTGAAAATGCA+TGG + tig0035590:1150-1169 Msa1455130:three_prime_UTR 25.0%
! ATTTCACGCATTTAGTAATT+TGG - tig0035590:1330-1349 None:intergenic 25.0%
! CTCATAAACAGAAAATTTGT+AGG + tig0035590:1371-1390 Msa1455130:three_prime_UTR 25.0%
!! ATAACAAAAGCATATTCAGA+AGG - tig0035590:1397-1416 None:intergenic 25.0%
! AAGTGATTATAACACATTTG+AGG - tig0035590:1420-1439 None:intergenic 25.0%
TAAATTCGCCAAACTCTATA+TGG - tig0035590:75-94 None:intergenic 30.0%
!!! CATTTTATTTTGTCTGCTTG+AGG - tig0035590:130-149 None:intergenic 30.0%
! CTGCGAAGAATAATTTTACA+TGG - tig0035590:304-323 None:intergenic 30.0%
CGTTTAGATTATATGACTTG+AGG + tig0035590:327-346 Msa1455130:CDS 30.0%
TCTATCCTATGAAAAGACTA+CGG - tig0035590:390-409 None:intergenic 30.0%
! AGTCTTTTCATAGGATAGAT+TGG + tig0035590:391-410 Msa1455130:intron 30.0%
!!! GATTTTGGTTGAATCTGATT+TGG + tig0035590:487-506 Msa1455130:CDS 30.0%
AAACTACGATTGTGATTCTT+CGG - tig0035590:888-907 None:intergenic 30.0%
CAAATGCAATGCATATAGAA+TGG + tig0035590:924-943 Msa1455130:three_prime_UTR 30.0%
GATATATGGTTATCAAAGGT+TGG - tig0035590:965-984 None:intergenic 30.0%
TAGTGAAAATTGTGAATTGC+AGG - tig0035590:1132-1151 None:intergenic 30.0%
AAATAGTGAAAATGCATGGA+GGG + tig0035590:1154-1173 Msa1455130:three_prime_UTR 30.0%
TAACTGAATTCTGACCATTA+AGG + tig0035590:1475-1494 Msa1455130:three_prime_UTR 30.0%
CATTATATTAGACGCCTTAA+TGG - tig0035590:1492-1511 None:intergenic 30.0%
TAAATTCGCCAAACTCTATA+TGG - tig0035590:75-94 None:intergenic 30.0%
!!! CATTTTATTTTGTCTGCTTG+AGG - tig0035590:130-149 None:intergenic 30.0%
! CTGCGAAGAATAATTTTACA+TGG - tig0035590:304-323 None:intergenic 30.0%
CGTTTAGATTATATGACTTG+AGG + tig0035590:327-346 Msa1455130:CDS 30.0%
TCTATCCTATGAAAAGACTA+CGG - tig0035590:390-409 None:intergenic 30.0%
! AGTCTTTTCATAGGATAGAT+TGG + tig0035590:391-410 Msa1455130:intron 30.0%
!!! GATTTTGGTTGAATCTGATT+TGG + tig0035590:487-506 Msa1455130:CDS 30.0%
AAACTACGATTGTGATTCTT+CGG - tig0035590:888-907 None:intergenic 30.0%
CAAATGCAATGCATATAGAA+TGG + tig0035590:924-943 Msa1455130:three_prime_UTR 30.0%
GATATATGGTTATCAAAGGT+TGG - tig0035590:965-984 None:intergenic 30.0%
TAGTGAAAATTGTGAATTGC+AGG - tig0035590:1132-1151 None:intergenic 30.0%
AAATAGTGAAAATGCATGGA+GGG + tig0035590:1154-1173 Msa1455130:three_prime_UTR 30.0%
TAACTGAATTCTGACCATTA+AGG + tig0035590:1475-1494 Msa1455130:three_prime_UTR 30.0%
CATTATATTAGACGCCTTAA+TGG - tig0035590:1492-1511 None:intergenic 30.0%
! CTTTTCGATGTCAATCACAA+CGG + tig0035590:49-68 Msa1455130:CDS 35.0%
GGCGAATTTATCAGATCTTT+AGG + tig0035590:85-104 Msa1455130:CDS 35.0%
TGTATATACGATCAACATCC+TGG - tig0035590:204-223 None:intergenic 35.0%
TTATATGACTTGAGGCATAC+AGG + tig0035590:335-354 Msa1455130:CDS 35.0%
CTATCCTATGAAAAGACTAC+GGG - tig0035590:389-408 None:intergenic 35.0%
!!! GGATATGGTGTTGATGATTT+TGG + tig0035590:472-491 Msa1455130:CDS 35.0%
!! TTTGGTTCTATCTGATGATG+TGG + tig0035590:505-524 Msa1455130:CDS 35.0%
TGATGTGGTTGAAACAATTG+TGG + tig0035590:520-539 Msa1455130:CDS 35.0%
! TTTCTAGAAACAGACACGAA+AGG + tig0035590:644-663 Msa1455130:CDS 35.0%
GAAGAATGGAGTGAATATGT+TGG + tig0035590:686-705 Msa1455130:CDS 35.0%
GTCATGTTCTTGAGTAATGA+TGG - tig0035590:719-738 None:intergenic 35.0%
CTGTGTCATAATGCAATGAA+TGG - tig0035590:787-806 None:intergenic 35.0%
TGCAATGCATATAGAATGGT+CGG + tig0035590:928-947 Msa1455130:three_prime_UTR 35.0%
AGACCATAGTACACTTTCTA+TGG + tig0035590:1028-1047 Msa1455130:three_prime_UTR 35.0%
GACCATAGTACACTTTCTAT+GGG + tig0035590:1029-1048 Msa1455130:three_prime_UTR 35.0%
ACCATAGTACACTTTCTATG+GGG + tig0035590:1030-1049 Msa1455130:three_prime_UTR 35.0%
GTTTCTGAATTTCTTATCCG+AGG + tig0035590:1069-1088 Msa1455130:three_prime_UTR 35.0%
AAACCTTGCAATAAACACCT+CGG - tig0035590:1089-1108 None:intergenic 35.0%
GAAATAGTGAAAATGCATGG+AGG + tig0035590:1153-1172 Msa1455130:three_prime_UTR 35.0%
! CATTCATGTAGTTTGTCGTT+TGG + tig0035590:1232-1251 Msa1455130:three_prime_UTR 35.0%
TAAGCTCGTCAAAAACTGTA+AGG - tig0035590:1274-1293 None:intergenic 35.0%
TATGAGACTCATTGTGTAAG+CGG - tig0035590:1357-1376 None:intergenic 35.0%
TAACATGATCTTTCGTGATG+TGG + tig0035590:1442-1461 Msa1455130:three_prime_UTR 35.0%
! CTTTTCGATGTCAATCACAA+CGG + tig0035590:49-68 Msa1455130:CDS 35.0%
GGCGAATTTATCAGATCTTT+AGG + tig0035590:85-104 Msa1455130:CDS 35.0%
TGTATATACGATCAACATCC+TGG - tig0035590:204-223 None:intergenic 35.0%
TTATATGACTTGAGGCATAC+AGG + tig0035590:335-354 Msa1455130:CDS 35.0%
CTATCCTATGAAAAGACTAC+GGG - tig0035590:389-408 None:intergenic 35.0%
!!! GGATATGGTGTTGATGATTT+TGG + tig0035590:472-491 Msa1455130:CDS 35.0%
!! TTTGGTTCTATCTGATGATG+TGG + tig0035590:505-524 Msa1455130:CDS 35.0%
TGATGTGGTTGAAACAATTG+TGG + tig0035590:520-539 Msa1455130:CDS 35.0%
! TTTCTAGAAACAGACACGAA+AGG + tig0035590:644-663 Msa1455130:CDS 35.0%
GAAGAATGGAGTGAATATGT+TGG + tig0035590:686-705 Msa1455130:CDS 35.0%
GTCATGTTCTTGAGTAATGA+TGG - tig0035590:719-738 None:intergenic 35.0%
CTGTGTCATAATGCAATGAA+TGG - tig0035590:787-806 None:intergenic 35.0%
TGCAATGCATATAGAATGGT+CGG + tig0035590:928-947 Msa1455130:three_prime_UTR 35.0%
AGACCATAGTACACTTTCTA+TGG + tig0035590:1028-1047 Msa1455130:three_prime_UTR 35.0%
GACCATAGTACACTTTCTAT+GGG + tig0035590:1029-1048 Msa1455130:three_prime_UTR 35.0%
ACCATAGTACACTTTCTATG+GGG + tig0035590:1030-1049 Msa1455130:three_prime_UTR 35.0%
GTTTCTGAATTTCTTATCCG+AGG + tig0035590:1069-1088 Msa1455130:three_prime_UTR 35.0%
AAACCTTGCAATAAACACCT+CGG - tig0035590:1089-1108 None:intergenic 35.0%
GAAATAGTGAAAATGCATGG+AGG + tig0035590:1153-1172 Msa1455130:three_prime_UTR 35.0%
! CATTCATGTAGTTTGTCGTT+TGG + tig0035590:1232-1251 Msa1455130:three_prime_UTR 35.0%
TAAGCTCGTCAAAAACTGTA+AGG - tig0035590:1274-1293 None:intergenic 35.0%
TATGAGACTCATTGTGTAAG+CGG - tig0035590:1357-1376 None:intergenic 35.0%
TAACATGATCTTTCGTGATG+TGG + tig0035590:1442-1461 Msa1455130:three_prime_UTR 35.0%
AGTCGTTTGTTTACCATTCC+AGG + tig0035590:183-202 Msa1455130:intron 40.0%
ATACGATCAACATCCTGGAA+TGG - tig0035590:199-218 None:intergenic 40.0%
! TACTCCCGTAGTCTTTTCAT+AGG + tig0035590:382-401 Msa1455130:intron 40.0%
GGTTGAAACAATTGTGGACA+AGG + tig0035590:526-545 Msa1455130:CDS 40.0%
! TCCCCATAGAAAGTGTACTA+TGG - tig0035590:1034-1053 None:intergenic 40.0%
ACACTTTCTATGGGGAAGTT+TGG + tig0035590:1038-1057 Msa1455130:three_prime_UTR 40.0%
! TATCCGAGGTGTTTATTGCA+AGG + tig0035590:1083-1102 Msa1455130:three_prime_UTR 40.0%
! AGGCTTTTCTGATTGCTCTA+AGG - tig0035590:1112-1131 None:intergenic 40.0%
TGAATGCTAGGAATGTGAGA+TGG - tig0035590:1218-1237 None:intergenic 40.0%
CGACAAACTACATGAATGCT+AGG - tig0035590:1230-1249 None:intergenic 40.0%
ACTGTAAGGTCTTGATCCAA+CGG - tig0035590:1260-1279 None:intergenic 40.0%
TTGGAGCTGTTAGATGAAGA+TGG - tig0035590:1311-1330 None:intergenic 40.0%
AGTCGTTTGTTTACCATTCC+AGG + tig0035590:183-202 Msa1455130:intron 40.0%
ATACGATCAACATCCTGGAA+TGG - tig0035590:199-218 None:intergenic 40.0%
! TACTCCCGTAGTCTTTTCAT+AGG + tig0035590:382-401 Msa1455130:intron 40.0%
GGTTGAAACAATTGTGGACA+AGG + tig0035590:526-545 Msa1455130:CDS 40.0%
! TCCCCATAGAAAGTGTACTA+TGG - tig0035590:1034-1053 None:intergenic 40.0%
ACACTTTCTATGGGGAAGTT+TGG + tig0035590:1038-1057 Msa1455130:three_prime_UTR 40.0%
! TATCCGAGGTGTTTATTGCA+AGG + tig0035590:1083-1102 Msa1455130:three_prime_UTR 40.0%
! AGGCTTTTCTGATTGCTCTA+AGG - tig0035590:1112-1131 None:intergenic 40.0%
TGAATGCTAGGAATGTGAGA+TGG - tig0035590:1218-1237 None:intergenic 40.0%
CGACAAACTACATGAATGCT+AGG - tig0035590:1230-1249 None:intergenic 40.0%
ACTGTAAGGTCTTGATCCAA+CGG - tig0035590:1260-1279 None:intergenic 40.0%
TTGGAGCTGTTAGATGAAGA+TGG - tig0035590:1311-1330 None:intergenic 40.0%
CACAACGGCCATATAGAGTT+TGG + tig0035590:64-83 Msa1455130:CDS 45.0%
TTGTCTGCTTGAGGAGCTTT+AGG - tig0035590:121-140 None:intergenic 45.0%
GAAACAGACACGAAAGGTGA+CGG + tig0035590:650-669 Msa1455130:CDS 45.0%
TCTGCGCTCAGCATAAAACT+GGG - tig0035590:863-882 None:intergenic 45.0%
TTCTGCGCTCAGCATAAAAC+TGG - tig0035590:864-883 None:intergenic 45.0%
! TTTGACCAGGCAGCAGATTT+TGG + tig0035590:1184-1203 Msa1455130:three_prime_UTR 45.0%
TGAATCCAAAATCTGCTGCC+TGG - tig0035590:1192-1211 None:intergenic 45.0%
CTTCATCTGCTGCTGATACA+CGG - tig0035590:1525-1544 None:intergenic 45.0%
CACAACGGCCATATAGAGTT+TGG + tig0035590:64-83 Msa1455130:CDS 45.0%
TTGTCTGCTTGAGGAGCTTT+AGG - tig0035590:121-140 None:intergenic 45.0%
GAAACAGACACGAAAGGTGA+CGG + tig0035590:650-669 Msa1455130:CDS 45.0%
TCTGCGCTCAGCATAAAACT+GGG - tig0035590:863-882 None:intergenic 45.0%
TTCTGCGCTCAGCATAAAAC+TGG - tig0035590:864-883 None:intergenic 45.0%
! TTTGACCAGGCAGCAGATTT+TGG + tig0035590:1184-1203 Msa1455130:three_prime_UTR 45.0%
TGAATCCAAAATCTGCTGCC+TGG - tig0035590:1192-1211 None:intergenic 45.0%
CTTCATCTGCTGCTGATACA+CGG - tig0035590:1525-1544 None:intergenic 45.0%
AGGTTACATTGAGCGCGAAG+AGG + tig0035590:355-374 Msa1455130:CDS 50.0%
!! GGAGGGACACAATTTTGACC+AGG + tig0035590:1171-1190 Msa1455130:three_prime_UTR 50.0%
! AGTTTGTCGTTTGGAGCCGT+TGG + tig0035590:1241-1260 Msa1455130:three_prime_UTR 50.0%
AGGTTACATTGAGCGCGAAG+AGG + tig0035590:355-374 Msa1455130:CDS 50.0%
!! GGAGGGACACAATTTTGACC+AGG + tig0035590:1171-1190 Msa1455130:three_prime_UTR 50.0%
! AGTTTGTCGTTTGGAGCCGT+TGG + tig0035590:1241-1260 Msa1455130:three_prime_UTR 50.0%
Chromosome Type Strat End Strand Name
tig0035590 gene 40 1550 40 ID=Msa1455130;Name=Msa1455130
tig0035590 mRNA 40 1550 40 ID=Msa1455130-mRNA-1;Parent=Msa1455130;Name=Msa1455130-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.8|1|1|1|5|646|139
tig0035590 exon 40 148 40 ID=Msa1455130-mRNA-1:exon:20142;Parent=Msa1455130-mRNA-1
tig0035590 exon 324 376 324 ID=Msa1455130-mRNA-1:exon:20143;Parent=Msa1455130-mRNA-1
tig0035590 exon 467 547 467 ID=Msa1455130-mRNA-1:exon:20144;Parent=Msa1455130-mRNA-1
tig0035590 exon 641 753 641 ID=Msa1455130-mRNA-1:exon:20145;Parent=Msa1455130-mRNA-1
tig0035590 exon 841 1550 841 ID=Msa1455130-mRNA-1:exon:20146;Parent=Msa1455130-mRNA-1
tig0035590 CDS 40 148 40 ID=Msa1455130-mRNA-1:cds;Parent=Msa1455130-mRNA-1
tig0035590 CDS 324 376 324 ID=Msa1455130-mRNA-1:cds;Parent=Msa1455130-mRNA-1
tig0035590 CDS 467 547 467 ID=Msa1455130-mRNA-1:cds;Parent=Msa1455130-mRNA-1
tig0035590 CDS 641 753 641 ID=Msa1455130-mRNA-1:cds;Parent=Msa1455130-mRNA-1
tig0035590 CDS 841 904 841 ID=Msa1455130-mRNA-1:cds;Parent=Msa1455130-mRNA-1
tig0035590 three_prime_UTR 905 1550 905 ID=Msa1455130-mRNA-1:three_prime_utr;Parent=Msa1455130-mRNA-1
Gene Sequence

>Msa1455130

ATGTTTGATCTTTTCGATGTCAATCACAACGGCCATATAGAGTTTGGCGAATTTATCAGATCTTTAGGCATCTTTCATCCTAAAGCTCCTCAAGCAGACAAAATAAAATATGCGTTTAGATTATATGACTTGAGGCATACAGGTTACATTGAGCGCGAAGAGTTGAAGGATATGGTGTTGATGATTTTGGTTGAATCTGATTTGGTTCTATCTGATGATGTGGTTGAAACAATTGTGGACAAGACATTTCTAGAAACAGACACGAAAGGTGACGGAAAAATTGACTTAGAAGAATGGAGTGAATATGTTGGAAAGAATCCATCATTACTCAAGAACATGACTCTACCTTATCTAATGGACATAACTCTAGCATTTCCCAGTTTTATGCTGAGCGCAGAAACCGAAGAATCACAATCGTAG
Protein sequence

>Msa1455130

MFDLFDVNHNGHIEFGEFIRSLGIFHPKAPQADKIKYAFRLYDLRHTGYIEREELKDMVLMILVESDLVLSDDVVETIVDKTFLETDTKGDGKIDLEEWSEYVGKNPSLLKNMTLPYLMDITLAFPSFMLSAETEESQS*