Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421040 | sp|O81223|CNBL4_ARATH | 59.615 | 156 | 52 | 1 | 54 | 198 | 59 | 214 | 7.48e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421040 | A0A396GEZ0 | 80.591 | 237 | 9 | 3 | 1 | 201 | 1 | 236 | 1.64e-125 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1346840 | Msa1421040 | 0.801460 | 8.912528e-49 | -8.615850e-47 |
| Msa1412130 | Msa1421040 | 0.802289 | 6.021235e-49 | -8.615850e-47 |
| Msa1421040 | Msa1455130 | 0.948548 | 7.591383e-107 | -8.615850e-47 |
| Msa0741440 | Msa1421040 | 0.800453 | 1.431083e-48 | -8.615850e-47 |
| Msa0783960 | Msa1421040 | 0.867398 | 1.409076e-65 | -8.615850e-47 |
| Msa0822500 | Msa1421040 | 0.804182 | 2.442420e-49 | -8.615850e-47 |
| Msa0278580 | Msa1421040 | 0.809084 | 2.254009e-50 | -8.615850e-47 |
| Msa1176710 | Msa1421040 | 0.820033 | 8.492383e-53 | -8.615850e-47 |
| Msa1176720 | Msa1421040 | 0.820990 | 5.122831e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421040 | MtrunA17_Chr8g0346911 | 80.591 | 237 | 9 | 3 | 1 | 201 | 1 | 236 | 3.16e-129 | 363 |
| Msa1421040 | MtrunA17_Chr8g0388331 | 57.692 | 156 | 55 | 1 | 54 | 198 | 55 | 210 | 1.62e-60 | 187 |
| Msa1421040 | MtrunA17_Chr4g0076551 | 52.866 | 157 | 63 | 1 | 54 | 199 | 71 | 227 | 3.66e-52 | 167 |
| Msa1421040 | MtrunA17_Chr3g0102821 | 52.866 | 157 | 63 | 1 | 54 | 199 | 70 | 226 | 6.46e-52 | 166 |
| Msa1421040 | MtrunA17_Chr4g0055421 | 50.641 | 156 | 66 | 1 | 54 | 198 | 55 | 210 | 7.09e-52 | 166 |
| Msa1421040 | MtrunA17_Chr5g0446931 | 52.229 | 157 | 64 | 1 | 54 | 199 | 70 | 226 | 4.22e-51 | 164 |
| Msa1421040 | MtrunA17_Chr2g0290771 | 49.682 | 157 | 68 | 1 | 54 | 199 | 35 | 191 | 2.07e-49 | 159 |
| Msa1421040 | MtrunA17_Chr1g0151621 | 52.941 | 153 | 61 | 1 | 55 | 196 | 95 | 247 | 3.44e-49 | 160 |
| Msa1421040 | MtrunA17_Chr2g0290781 | 44.654 | 159 | 77 | 1 | 54 | 201 | 75 | 233 | 1.23e-40 | 138 |
| Msa1421040 | MtrunA17_Chr2g0290751 | 50.000 | 138 | 58 | 1 | 54 | 180 | 73 | 210 | 6.08e-40 | 135 |
| Msa1421040 | MtrunA17_Chr2g0290761 | 49.275 | 138 | 59 | 1 | 54 | 180 | 73 | 210 | 1.78e-38 | 131 |
| Msa1421040 | MtrunA17_Chr3g0126801 | 67.778 | 90 | 29 | 0 | 111 | 200 | 17 | 106 | 3.47e-38 | 128 |
| Msa1421040 | MtrunA17_Chr8g0341941 | 44.737 | 152 | 73 | 1 | 54 | 194 | 100 | 251 | 4.25e-35 | 124 |
| Msa1421040 | MtrunA17_Chr4g0063121 | 38.961 | 154 | 83 | 1 | 58 | 200 | 16 | 169 | 6.00e-33 | 117 |
| Msa1421040 | MtrunA17_Chr8g0388311 | 52.439 | 82 | 39 | 0 | 120 | 201 | 1 | 82 | 2.97e-25 | 94.0 |
| Msa1421040 | MtrunA17_Chr3g0126811 | 50.000 | 98 | 24 | 1 | 40 | 112 | 17 | 114 | 1.76e-23 | 90.5 |
| Msa1421040 | MtrunA17_Chr5g0399921 | 54.386 | 57 | 26 | 0 | 54 | 110 | 54 | 110 | 1.63e-16 | 72.4 |
| Msa1421040 | MtrunA17_Chr5g0399931 | 50.000 | 74 | 37 | 0 | 120 | 193 | 1 | 74 | 3.35e-16 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1421040 | AT5G24270.3 | 58.861 | 158 | 54 | 1 | 54 | 200 | 12 | 169 | 2.16e-63 | 194 |
| Msa1421040 | AT5G24270.5 | 59.615 | 156 | 52 | 1 | 54 | 198 | 34 | 189 | 4.31e-63 | 194 |
| Msa1421040 | AT5G24270.4 | 59.615 | 156 | 52 | 1 | 54 | 198 | 59 | 214 | 7.61e-63 | 194 |
| Msa1421040 | AT5G24270.1 | 59.615 | 156 | 52 | 1 | 54 | 198 | 59 | 214 | 7.61e-63 | 194 |
| Msa1421040 | AT5G24270.2 | 59.615 | 156 | 52 | 1 | 54 | 198 | 59 | 214 | 7.61e-63 | 194 |
| Msa1421040 | AT4G17615.2 | 50.943 | 159 | 67 | 2 | 51 | 198 | 10 | 168 | 3.27e-52 | 166 |
| Msa1421040 | AT4G17615.4 | 44.131 | 213 | 101 | 4 | 1 | 198 | 1 | 210 | 9.68e-52 | 166 |
| Msa1421040 | AT4G17615.1 | 44.131 | 213 | 101 | 4 | 1 | 198 | 1 | 210 | 9.68e-52 | 166 |
| Msa1421040 | AT4G17615.5 | 44.131 | 213 | 101 | 4 | 1 | 198 | 1 | 210 | 9.68e-52 | 166 |
| Msa1421040 | AT5G47100.1 | 44.601 | 213 | 100 | 4 | 1 | 198 | 1 | 210 | 1.11e-51 | 166 |
| Msa1421040 | AT1G64480.2 | 48.205 | 195 | 65 | 2 | 40 | 198 | 20 | 214 | 2.25e-51 | 165 |
| Msa1421040 | AT1G64480.3 | 48.205 | 195 | 65 | 2 | 40 | 198 | 20 | 214 | 2.25e-51 | 165 |
| Msa1421040 | AT1G64480.1 | 48.205 | 195 | 65 | 2 | 40 | 198 | 20 | 214 | 2.25e-51 | 165 |
| Msa1421040 | AT4G26570.1 | 51.592 | 157 | 65 | 1 | 54 | 199 | 70 | 226 | 4.75e-51 | 164 |
| Msa1421040 | AT5G55990.1 | 52.229 | 157 | 64 | 1 | 54 | 199 | 70 | 226 | 3.57e-50 | 162 |
| Msa1421040 | AT5G55990.2 | 52.229 | 157 | 64 | 1 | 54 | 199 | 70 | 226 | 3.57e-50 | 162 |
| Msa1421040 | AT4G26570.2 | 50.311 | 161 | 65 | 2 | 54 | 199 | 70 | 230 | 6.03e-49 | 159 |
| Msa1421040 | AT4G33000.2 | 51.923 | 156 | 64 | 1 | 54 | 198 | 91 | 246 | 4.14e-48 | 157 |
| Msa1421040 | AT4G33000.1 | 51.923 | 156 | 64 | 1 | 54 | 198 | 101 | 256 | 6.87e-48 | 157 |
| Msa1421040 | AT4G26560.1 | 42.697 | 178 | 86 | 2 | 38 | 199 | 37 | 214 | 6.18e-46 | 151 |
| Msa1421040 | AT4G17615.3 | 43.719 | 199 | 94 | 4 | 1 | 184 | 1 | 196 | 2.66e-44 | 148 |
| Msa1421040 | AT1G64480.4 | 47.458 | 177 | 57 | 2 | 40 | 180 | 20 | 196 | 2.36e-43 | 144 |
| Msa1421040 | AT4G16350.2 | 45.912 | 159 | 75 | 1 | 54 | 201 | 64 | 222 | 4.71e-42 | 141 |
| Msa1421040 | AT4G16350.1 | 45.912 | 159 | 75 | 1 | 54 | 201 | 64 | 222 | 4.71e-42 | 141 |
| Msa1421040 | AT4G01420.1 | 38.119 | 202 | 114 | 1 | 1 | 191 | 1 | 202 | 7.24e-41 | 138 |
| Msa1421040 | AT4G01420.2 | 37.696 | 191 | 108 | 1 | 1 | 180 | 1 | 191 | 6.67e-37 | 127 |
| Msa1421040 | AT5G47100.2 | 38.509 | 161 | 81 | 4 | 1 | 146 | 1 | 158 | 9.58e-27 | 100 |
| Msa1421040 | AT4G33000.5 | 46.226 | 106 | 46 | 1 | 54 | 148 | 91 | 196 | 7.12e-22 | 89.4 |
| Msa1421040 | AT4G33000.4 | 47.059 | 102 | 43 | 1 | 54 | 144 | 91 | 192 | 1.10e-21 | 88.2 |
| Msa1421040 | AT4G33000.6 | 47.059 | 102 | 43 | 1 | 54 | 144 | 91 | 192 | 1.10e-21 | 88.2 |
| Msa1421040 | AT4G33000.3 | 54.386 | 57 | 26 | 0 | 54 | 110 | 91 | 147 | 5.03e-13 | 64.3 |
Find 52 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCACGCATTTAGTAATT+TGG | 0.163718 | tig0024906:+36912 | None:intergenic |
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | tig0024906:+38121 | None:intergenic |
| CATTATATTAGACGCCTTAA+TGG | 0.237392 | tig0024906:+36750 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | tig0024906:-37767 | Msa1421040:CDS |
| TTCTAATAAGCATTGATATA+TGG | 0.263606 | tig0024906:+37263 | None:intergenic |
| AAAAGTAGCAGAAAATATTA+TGG | 0.327214 | tig0024906:-39322 | Msa1421040:CDS |
| TTCTGCGCTCAGCATAAAAC+TGG | 0.328781 | tig0024906:+37378 | None:intergenic |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | tig0024906:+38167 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | tig0024906:-38154 | Msa1421040:CDS |
| CATAAAGTTTATGTAAAGAA+TGG | 0.346436 | tig0024906:-39358 | Msa1421040:intron |
| AAATTTACAGTTGAAGGATA+TGG | 0.376424 | tig0024906:-37782 | Msa1421040:intron |
| TAACTGAATTCTGACCATTA+AGG | 0.382199 | tig0024906:-36764 | Msa1421040:three_prime_UTR |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | tig0024906:-38175 | Msa1421040:CDS |
| CATTCATGTAGTTTGTCGTT+TGG | 0.395666 | tig0024906:-37007 | Msa1421040:three_prime_UTR |
| CTCATAAACAGAAAATTTGT+AGG | 0.411703 | tig0024906:-36868 | Msa1421040:three_prime_UTR |
| AAACTACGATTGTGATTCTT+CGG | 0.429750 | tig0024906:+37354 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | tig0024906:+37523 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | tig0024906:-38344 | Msa1421040:CDS |
| GACATAAGCTTAATAAGTGT+TGG | 0.437812 | tig0024906:+39446 | None:intergenic |
| ATAAAGTTTATGTAAAGAAT+GGG | 0.465377 | tig0024906:-39357 | Msa1421040:intron |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | tig0024906:+37496 | None:intergenic |
| AGCAGCAGATGAAGAATTTG+TGG | 0.474533 | tig0024906:-36708 | Msa1421040:three_prime_UTR |
| GATATATGGTTATCAAAGGT+TGG | 0.474970 | tig0024906:+37277 | None:intergenic |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | tig0024906:-37553 | Msa1421040:CDS |
| AGTTTGTCGTTTGGAGCCGT+TGG | 0.490956 | tig0024906:-36998 | Msa1421040:three_prime_UTR |
| GGGACTTAGTTAACAGACTC+TGG | 0.494451 | tig0024906:-36687 | None:intergenic |
| TTGGAGCTGTTAGATGAAGA+TGG | 0.504661 | tig0024906:+36931 | None:intergenic |
| CGACAAACTACATGAATGCT+AGG | 0.516597 | tig0024906:+37012 | None:intergenic |
| AAGTGATTATAACACATTTG+AGG | 0.519985 | tig0024906:+36822 | None:intergenic |
| CAAATGCAATGCATATAGAA+TGG | 0.521321 | tig0024906:-37315 | Msa1421040:three_prime_UTR |
| CTTATCTTTGCCAACTTCAG+AGG | 0.524395 | tig0024906:+39293 | None:intergenic |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | tig0024906:-38338 | Msa1421040:intron |
| TACATGGTGTTTCAGAAGCA+AGG | 0.531935 | tig0024906:+39208 | None:intergenic |
| ATGGATGGATCCTCTGAAGT+TGG | 0.534150 | tig0024906:-39303 | Msa1421040:CDS |
| TAACATGATCTTTCGTGATG+TGG | 0.536071 | tig0024906:-36797 | Msa1421040:three_prime_UTR |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | tig0024906:-39318 | Msa1421040:CDS |
| TGCAATGCATATAGAATGGT+CGG | 0.548590 | tig0024906:-37311 | Msa1421040:three_prime_UTR |
| GCAGCAGATGAAGAATTTGT+GGG | 0.552817 | tig0024906:-36707 | Msa1421040:three_prime_UTR |
| CTTCATCTGCTGCTGATACA+CGG | 0.560602 | tig0024906:+36717 | None:intergenic |
| TTTGGTTCTATCTGATGATG+TGG | 0.562282 | tig0024906:-37734 | Msa1421040:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | tig0024906:-38339 | Msa1421040:CDS |
| CATTGATATATGGTTATCAA+AGG | 0.564986 | tig0024906:+37273 | None:intergenic |
| TATGAGACTCATTGTGTAAG+CGG | 0.570664 | tig0024906:+36885 | None:intergenic |
| ATAACAAAAGCATATTCAGA+AGG | 0.604134 | tig0024906:+36845 | None:intergenic |
| ACTGTAAGGTCTTGATCCAA+CGG | 0.605756 | tig0024906:+36982 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | tig0024906:-37713 | Msa1421040:intron |
| GAAACAGACACGAAAGGTGA+CGG | 0.615254 | tig0024906:-37589 | Msa1421040:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | tig0024906:+38332 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | tig0024906:-37719 | Msa1421040:CDS |
| TCTGCGCTCAGCATAAAACT+GGG | 0.668163 | tig0024906:+37379 | None:intergenic |
| TTTCTAGAAACAGACACGAA+AGG | 0.669410 | tig0024906:-37595 | Msa1421040:CDS |
| AGGTTACATTGAGCGCGAAG+AGG | 0.670430 | tig0024906:-37884 | Msa1421040:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTCTTATATATATATTT+TGG | - | tig0024906:38560-38579 | Msa1421040:intron | 10.0% |
| !!! | GTTTCTTATATATATATTTT+GGG | - | tig0024906:38561-38580 | Msa1421040:intron | 10.0% |
| !!! | TTTCTTATATATATATTTTG+GGG | - | tig0024906:38562-38581 | Msa1421040:intron | 10.0% |
| !! | ATAAAGTTTATGTAAAGAAT+GGG | - | tig0024906:36837-36856 | Msa1421040:three_prime_UTR | 15.0% |
| !! | GAAAAAAAAAAAACTTGAAA+AGG | + | tig0024906:37025-37044 | None:intergenic | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | - | tig0024906:37081-37100 | Msa1421040:intron | 15.0% |
| !! | ATATATTAAGTGTAAAAAAG+AGG | + | tig0024906:37178-37197 | None:intergenic | 15.0% |
| !! | TAATTAGTTATTGCTAAAAA+AGG | - | tig0024906:37198-37217 | Msa1421040:intron | 15.0% |
| !! | AATTAGTTATTGCTAAAAAA+GGG | - | tig0024906:37199-37218 | Msa1421040:intron | 15.0% |
| !!! | TTCTTATATATATATTTTGG+GGG | - | tig0024906:38563-38582 | Msa1421040:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | + | tig0024906:38701-38720 | None:intergenic | 15.0% |
| !!! | AAAATTGACTTTTCTTTCAT+TGG | - | tig0024906:36722-36741 | Msa1421040:three_prime_UTR | 20.0% |
| !! | CATAAAGTTTATGTAAAGAA+TGG | - | tig0024906:36836-36855 | Msa1421040:three_prime_UTR | 20.0% |
| !! | AAAAGTAGCAGAAAATATTA+TGG | - | tig0024906:36872-36891 | Msa1421040:three_prime_UTR | 20.0% |
| !!! | TCAAGTTTTTTTTTTTTCCT+TGG | - | tig0024906:37027-37046 | Msa1421040:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | - | tig0024906:37145-37164 | Msa1421040:intron | 20.0% |
| !! | ATTAGTTATTGCTAAAAAAG+GGG | - | tig0024906:37200-37219 | Msa1421040:intron | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | - | tig0024906:38380-38399 | Msa1421040:intron | 20.0% |
| !! | TAATGAAAATTTACAGTTGA+AGG | - | tig0024906:38406-38425 | Msa1421040:intron | 20.0% |
| !!! | TCTTATATATATATTTTGGG+GGG | - | tig0024906:38564-38583 | Msa1421040:intron | 20.0% |
| !!! | ACTTTTTGATTCTAATTTCA+GGG | - | tig0024906:38775-38794 | Msa1421040:intron | 20.0% |
| !!! | TTCTAATAAGCATTGATATA+TGG | + | tig0024906:38934-38953 | None:intergenic | 20.0% |
| !! | TATCAATGCTTATTAGAAAT+TGG | - | tig0024906:38936-38955 | Msa1421040:intron | 20.0% |
| !! | TCATTTTCTTTTACTTGTGA+AGG | + | tig0024906:36933-36952 | None:intergenic | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | - | tig0024906:37109-37128 | Msa1421040:intron | 25.0% |
| !! | AAATAAGTTTAAAATGCTCG+CGG | + | tig0024906:37317-37336 | None:intergenic | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | - | tig0024906:37330-37349 | Msa1421040:three_prime_UTR | 25.0% |
| ! | TAGCTTATGAAAACAGATTA+TGG | - | tig0024906:37354-37373 | Msa1421040:exon | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | + | tig0024906:37518-37537 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | - | tig0024906:37657-37676 | Msa1421040:intron | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | - | tig0024906:37796-37815 | Msa1421040:intron | 25.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | - | tig0024906:38412-38431 | Msa1421040:intron | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | - | tig0024906:38627-38646 | Msa1421040:intron | 25.0% |
| !!! | CACTTTTTGATTCTAATTTC+AGG | - | tig0024906:38774-38793 | Msa1421040:intron | 25.0% |
| ! | CATTGATATATGGTTATCAA+AGG | + | tig0024906:38924-38943 | None:intergenic | 25.0% |
| ! | AAGAAATTCAGAAACAACAA+CGG | + | tig0024906:39019-39038 | None:intergenic | 25.0% |
| ! | TAAGAAATAGTGAAAATGCA+TGG | - | tig0024906:39105-39124 | Msa1421040:intron | 25.0% |
| ! | ATTTCACGCATTTAGTAATT+TGG | + | tig0024906:39285-39304 | None:intergenic | 25.0% |
| ! | CTCATAAACAGAAAATTTGT+AGG | - | tig0024906:39326-39345 | Msa1421040:CDS | 25.0% |
| !! | ATAACAAAAGCATATTCAGA+AGG | + | tig0024906:39352-39371 | None:intergenic | 25.0% |
| ! | AAGTGATTATAACACATTTG+AGG | + | tig0024906:39375-39394 | None:intergenic | 25.0% |
| GACATAAGCTTAATAAGTGT+TGG | + | tig0024906:36751-36770 | None:intergenic | 30.0% | |
| GTAGCAGAAAATATTATGGA+TGG | - | tig0024906:36876-36895 | Msa1421040:three_prime_UTR | 30.0% | |
| ! | CAAGACAATTTAACTTTCCA+AGG | + | tig0024906:37047-37066 | None:intergenic | 30.0% |
| ATAATCACTTCTGCTACAAT+CGG | - | tig0024906:37448-37467 | Msa1421040:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | + | tig0024906:37513-37532 | None:intergenic | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | + | tig0024906:37544-37563 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | - | tig0024906:37643-37662 | Msa1421040:intron | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | + | tig0024906:38030-38049 | None:intergenic | 30.0% | |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | + | tig0024906:38085-38104 | None:intergenic | 30.0% |
| ! | CTGCGAAGAATAATTTTACA+TGG | + | tig0024906:38259-38278 | None:intergenic | 30.0% |
| CGTTTAGATTATATGACTTG+AGG | - | tig0024906:38282-38301 | Msa1421040:intron | 30.0% | |
| TCTATCCTATGAAAAGACTA+CGG | + | tig0024906:38345-38364 | None:intergenic | 30.0% | |
| ! | AGTCTTTTCATAGGATAGAT+TGG | - | tig0024906:38346-38365 | Msa1421040:CDS | 30.0% |
| !!! | GATTTTGGTTGAATCTGATT+TGG | - | tig0024906:38442-38461 | Msa1421040:intron | 30.0% |
| AAACTACGATTGTGATTCTT+CGG | + | tig0024906:38843-38862 | None:intergenic | 30.0% | |
| CAAATGCAATGCATATAGAA+TGG | - | tig0024906:38879-38898 | Msa1421040:intron | 30.0% | |
| GATATATGGTTATCAAAGGT+TGG | + | tig0024906:38920-38939 | None:intergenic | 30.0% | |
| TAGTGAAAATTGTGAATTGC+AGG | + | tig0024906:39087-39106 | None:intergenic | 30.0% | |
| AAATAGTGAAAATGCATGGA+GGG | - | tig0024906:39109-39128 | Msa1421040:intron | 30.0% | |
| TAACTGAATTCTGACCATTA+AGG | - | tig0024906:39430-39449 | Msa1421040:five_prime_UTR | 30.0% | |
| CATTATATTAGACGCCTTAA+TGG | + | tig0024906:39447-39466 | None:intergenic | 30.0% | |
| AGGAAGCTTTCTTACTTACA+TGG | + | tig0024906:37005-37024 | None:intergenic | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | - | tig0024906:37226-37245 | Msa1421040:intron | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | - | tig0024906:37234-37253 | Msa1421040:intron | 35.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | + | tig0024906:37240-37259 | None:intergenic | 35.0% | |
| ! | TTTGGATTGACTTCTACACT+TGG | - | tig0024906:37252-37271 | Msa1421040:intron | 35.0% |
| ATCCAAACAGAACCTGAAAT+TGG | - | tig0024906:37485-37504 | Msa1421040:intron | 35.0% | |
| !! | AACCAATTTCAGGTTCTGTT+TGG | + | tig0024906:37490-37509 | None:intergenic | 35.0% |
| ACTTGAATCTCTTGTTCGAT+TGG | - | tig0024906:37711-37730 | Msa1421040:intron | 35.0% | |
| GAAAAGATCAAACATCTGCA+TGG | + | tig0024906:37990-38009 | None:intergenic | 35.0% | |
| ! | CTTTTCGATGTCAATCACAA+CGG | - | tig0024906:38004-38023 | Msa1421040:intron | 35.0% |
| GGCGAATTTATCAGATCTTT+AGG | - | tig0024906:38040-38059 | Msa1421040:intron | 35.0% | |
| TGTATATACGATCAACATCC+TGG | + | tig0024906:38159-38178 | None:intergenic | 35.0% | |
| TTATATGACTTGAGGCATAC+AGG | - | tig0024906:38290-38309 | Msa1421040:intron | 35.0% | |
| CTATCCTATGAAAAGACTAC+GGG | + | tig0024906:38344-38363 | None:intergenic | 35.0% | |
| !!! | GGATATGGTGTTGATGATTT+TGG | - | tig0024906:38427-38446 | Msa1421040:intron | 35.0% |
| !! | TTTGGTTCTATCTGATGATG+TGG | - | tig0024906:38460-38479 | Msa1421040:intron | 35.0% |
| TGATGTGGTTGAAACAATTG+TGG | - | tig0024906:38475-38494 | Msa1421040:intron | 35.0% | |
| ! | TTTCTAGAAACAGACACGAA+AGG | - | tig0024906:38599-38618 | Msa1421040:intron | 35.0% |
| GAAGAATGGAGTGAATATGT+TGG | - | tig0024906:38641-38660 | Msa1421040:intron | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | + | tig0024906:38674-38693 | None:intergenic | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | + | tig0024906:38742-38761 | None:intergenic | 35.0% | |
| TGCAATGCATATAGAATGGT+CGG | - | tig0024906:38883-38902 | Msa1421040:intron | 35.0% | |
| AGACCATAGTACACTTTCTA+TGG | - | tig0024906:38983-39002 | Msa1421040:intron | 35.0% | |
| GACCATAGTACACTTTCTAT+GGG | - | tig0024906:38984-39003 | Msa1421040:intron | 35.0% | |
| ACCATAGTACACTTTCTATG+GGG | - | tig0024906:38985-39004 | Msa1421040:intron | 35.0% | |
| GTTTCTGAATTTCTTATCCG+AGG | - | tig0024906:39024-39043 | Msa1421040:intron | 35.0% | |
| AAACCTTGCAATAAACACCT+CGG | + | tig0024906:39044-39063 | None:intergenic | 35.0% | |
| GAAATAGTGAAAATGCATGG+AGG | - | tig0024906:39108-39127 | Msa1421040:intron | 35.0% | |
| ! | CATTCATGTAGTTTGTCGTT+TGG | - | tig0024906:39187-39206 | Msa1421040:intron | 35.0% |
| TAAGCTCGTCAAAAACTGTA+AGG | + | tig0024906:39229-39248 | None:intergenic | 35.0% | |
| TATGAGACTCATTGTGTAAG+CGG | + | tig0024906:39312-39331 | None:intergenic | 35.0% | |
| TAACATGATCTTTCGTGATG+TGG | - | tig0024906:39397-39416 | Msa1421040:intron | 35.0% | |
| CTTATCTTTGCCAACTTCAG+AGG | + | tig0024906:36904-36923 | None:intergenic | 40.0% | |
| TACATGGTGTTTCAGAAGCA+AGG | + | tig0024906:36989-37008 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | - | tig0024906:37225-37244 | Msa1421040:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | + | tig0024906:37500-37519 | None:intergenic | 40.0% | |
| AAACAAACGCAACCTCTTTG+TGG | - | tig0024906:37850-37869 | Msa1421040:intron | 40.0% | |
| AGTCGTTTGTTTACCATTCC+AGG | - | tig0024906:38138-38157 | Msa1421040:CDS | 40.0% | |
| ATACGATCAACATCCTGGAA+TGG | + | tig0024906:38154-38173 | None:intergenic | 40.0% | |
| ! | TACTCCCGTAGTCTTTTCAT+AGG | - | tig0024906:38337-38356 | Msa1421040:intron | 40.0% |
| GGTTGAAACAATTGTGGACA+AGG | - | tig0024906:38481-38500 | Msa1421040:intron | 40.0% | |
| ! | TCCCCATAGAAAGTGTACTA+TGG | + | tig0024906:38989-39008 | None:intergenic | 40.0% |
| ACACTTTCTATGGGGAAGTT+TGG | - | tig0024906:38993-39012 | Msa1421040:intron | 40.0% | |
| ! | TATCCGAGGTGTTTATTGCA+AGG | - | tig0024906:39038-39057 | Msa1421040:intron | 40.0% |
| ! | AGGCTTTTCTGATTGCTCTA+AGG | + | tig0024906:39067-39086 | None:intergenic | 40.0% |
| TGAATGCTAGGAATGTGAGA+TGG | + | tig0024906:39173-39192 | None:intergenic | 40.0% | |
| CGACAAACTACATGAATGCT+AGG | + | tig0024906:39185-39204 | None:intergenic | 40.0% | |
| ACTGTAAGGTCTTGATCCAA+CGG | + | tig0024906:39215-39234 | None:intergenic | 40.0% | |
| TTGGAGCTGTTAGATGAAGA+TGG | + | tig0024906:39266-39285 | None:intergenic | 40.0% | |
| AGCAGCAGATGAAGAATTTG+TGG | - | tig0024906:39486-39505 | Msa1421040:five_prime_UTR | 40.0% | |
| GCAGCAGATGAAGAATTTGT+GGG | - | tig0024906:39487-39506 | Msa1421040:five_prime_UTR | 40.0% | |
| !! | ATGGATGGATCCTCTGAAGT+TGG | - | tig0024906:36891-36910 | Msa1421040:three_prime_UTR | 45.0% |
| GAGAGAGGTGGAAATCTTGA+AGG | - | tig0024906:37604-37623 | Msa1421040:intron | 45.0% | |
| AACGCAACCTCTTTGTGGAT+AGG | - | tig0024906:37855-37874 | Msa1421040:intron | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | - | tig0024906:37856-37875 | Msa1421040:intron | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | + | tig0024906:37865-37884 | None:intergenic | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | - | tig0024906:38019-38038 | Msa1421040:intron | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | + | tig0024906:38076-38095 | None:intergenic | 45.0% | |
| GAAACAGACACGAAAGGTGA+CGG | - | tig0024906:38605-38624 | Msa1421040:intron | 45.0% | |
| TCTGCGCTCAGCATAAAACT+GGG | + | tig0024906:38818-38837 | None:intergenic | 45.0% | |
| TTCTGCGCTCAGCATAAAAC+TGG | + | tig0024906:38819-38838 | None:intergenic | 45.0% | |
| ! | TTTGACCAGGCAGCAGATTT+TGG | - | tig0024906:39139-39158 | Msa1421040:intron | 45.0% |
| TGAATCCAAAATCTGCTGCC+TGG | + | tig0024906:39147-39166 | None:intergenic | 45.0% | |
| CTTCATCTGCTGCTGATACA+CGG | + | tig0024906:39480-39499 | None:intergenic | 45.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | + | tig0024906:37592-37611 | None:intergenic | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | - | tig0024906:37589-37608 | Msa1421040:CDS | 50.0% | |
| AGCAGTTACTGTGAGAGAGG+TGG | - | tig0024906:37592-37611 | Msa1421040:CDS | 50.0% | |
| AGGTTACATTGAGCGCGAAG+AGG | - | tig0024906:38310-38329 | Msa1421040:intron | 50.0% | |
| !! | GGAGGGACACAATTTTGACC+AGG | - | tig0024906:39126-39145 | Msa1421040:intron | 50.0% |
| ! | AGTTTGTCGTTTGGAGCCGT+TGG | - | tig0024906:39196-39215 | Msa1421040:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024906 | gene | 36690 | 39526 | 36690 | ID=Msa1421040;Name=Msa1421040 |
| tig0024906 | mRNA | 36690 | 39526 | 36690 | ID=Msa1421040-mRNA-1;Parent=Msa1421040;Name=Msa1421040-mRNA-1;_AED=0.26;_eAED=0.26;_QI=139|0.66|0.8|0.9|0.77|0.6|10|432|201 |
| tig0024906 | exon | 36690 | 37037 | 36690 | ID=Msa1421040-mRNA-1:exon:1903;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 37273 | 37420 | 37273 | ID=Msa1421040-mRNA-1:exon:1902;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 37508 | 37620 | 37508 | ID=Msa1421040-mRNA-1:exon:1901;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 37714 | 37794 | 37714 | ID=Msa1421040-mRNA-1:exon:1900;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 37885 | 37904 | 37885 | ID=Msa1421040-mRNA-1:exon:1899;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 38113 | 38221 | 38113 | ID=Msa1421040-mRNA-1:exon:1898;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 38339 | 38398 | 38339 | ID=Msa1421040-mRNA-1:exon:1897;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 39106 | 39113 | 39106 | ID=Msa1421040-mRNA-1:exon:1896;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 39211 | 39373 | 39211 | ID=Msa1421040-mRNA-1:exon:1895;Parent=Msa1421040-mRNA-1 |
| tig0024906 | exon | 39400 | 39526 | 39400 | ID=Msa1421040-mRNA-1:exon:1894;Parent=Msa1421040-mRNA-1 |
| tig0024906 | five_prime_UTR | 39400 | 39526 | 39400 | ID=Msa1421040-mRNA-1:five_prime_utr;Parent=Msa1421040-mRNA-1 |
| tig0024906 | five_prime_UTR | 39362 | 39373 | 39362 | ID=Msa1421040-mRNA-1:five_prime_utr;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 39211 | 39361 | 39211 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 39106 | 39113 | 39106 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 38339 | 38398 | 38339 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 38113 | 38221 | 38113 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 37885 | 37904 | 37885 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 37714 | 37794 | 37714 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 37508 | 37620 | 37508 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | CDS | 37357 | 37420 | 37357 | ID=Msa1421040-mRNA-1:cds;Parent=Msa1421040-mRNA-1 |
| tig0024906 | three_prime_UTR | 37273 | 37356 | 37273 | ID=Msa1421040-mRNA-1:three_prime_utr;Parent=Msa1421040-mRNA-1 |
| tig0024906 | three_prime_UTR | 36690 | 37037 | 36690 | ID=Msa1421040-mRNA-1:three_prime_utr;Parent=Msa1421040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
