Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459250 | XP_024635151.1 | 92.562 | 242 | 6 | 5 | 21 | 259 | 21 | 253 | 2.45e-142 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459250 | sp|Q9CAE4|U1131_ARATH | 54.043 | 235 | 97 | 3 | 8 | 242 | 3 | 226 | 4.38e-65 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459250 | A0A396IIV3 | 92.562 | 242 | 6 | 5 | 21 | 259 | 21 | 253 | 1.17e-142 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa1459250 | 0.801699 | 7.961945e-49 | -8.615850e-47 |
| Msa0748170 | Msa1459250 | 0.817614 | 3.009266e-52 | -8.615850e-47 |
| Msa1280320 | Msa1459250 | 0.806802 | 6.892282e-50 | -8.615850e-47 |
| Msa1109680 | Msa1459250 | 0.800923 | 1.147623e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459250 | MtrunA17_Chr3g0080801 | 92.562 | 242 | 6 | 5 | 21 | 259 | 21 | 253 | 2.25e-146 | 410 |
| Msa1459250 | MtrunA17_Chr5g0430471 | 40.506 | 79 | 47 | 0 | 69 | 147 | 36 | 114 | 6.59e-12 | 62.0 |
| Msa1459250 | MtrunA17_Chr8g0349601 | 46.774 | 62 | 33 | 0 | 73 | 134 | 200 | 261 | 1.04e-11 | 63.9 |
| Msa1459250 | MtrunA17_Chr4g0065741 | 40.000 | 80 | 48 | 0 | 69 | 148 | 68 | 147 | 1.21e-11 | 61.6 |
| Msa1459250 | MtrunA17_Chr6g0484281 | 24.576 | 118 | 85 | 2 | 67 | 183 | 238 | 352 | 1.55e-11 | 64.3 |
| Msa1459250 | MtrunA17_Chr8g0357591 | 24.576 | 118 | 85 | 2 | 67 | 183 | 238 | 352 | 1.95e-11 | 63.9 |
| Msa1459250 | MtrunA17_Chr7g0266751 | 36.000 | 75 | 48 | 0 | 74 | 148 | 34 | 108 | 6.05e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459250 | AT3G10400.1 | 54.043 | 235 | 97 | 3 | 8 | 242 | 3 | 226 | 4.46e-66 | 207 |
| Msa1459250 | AT4G20030.1 | 38.182 | 110 | 66 | 1 | 46 | 153 | 12 | 121 | 2.50e-15 | 72.0 |
| Msa1459250 | AT3G23830.2 | 32.039 | 103 | 70 | 0 | 53 | 155 | 16 | 118 | 1.12e-11 | 61.6 |
| Msa1459250 | AT3G23830.1 | 32.039 | 103 | 70 | 0 | 53 | 155 | 16 | 118 | 1.12e-11 | 61.6 |
| Msa1459250 | AT1G53720.1 | 25.974 | 154 | 110 | 2 | 67 | 219 | 238 | 388 | 6.87e-11 | 62.8 |
Find 75 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGAGATCGGAGTTAGTT+AGG | 0.267856 | tig0040164:+3554 | Msa1459250:intergenic |
| ATCTAGATTTGAAACGTATA+TGG | 0.283307 | tig0040164:+3582 | Msa1459250:intergenic |
| CCGAAGAAGCGGAGGGGATT+TGG | 0.283372 | tig0040164:-3214 | Msa1459250:CDS |
| AGCGGTTTGAGGAAGATAAT+TGG | 0.283585 | tig0040164:-3120 | Msa1459250:CDS |
| GTCGTCTTCTTCGTCGCTAT+TGG | 0.300293 | tig0040164:+3765 | Msa1459250:intergenic |
| GCTTCTATTGCTGCTGATAA+TGG | 0.315635 | tig0040164:-3367 | Msa1459250:CDS |
| GTTGTTGTTGTTGGTGGTGG+TGG | 0.330897 | tig0040164:+3693 | Msa1459250:intergenic |
| CTCGGCCCCAACTGATTCTT+AGG | 0.340061 | tig0040164:+3250 | Msa1459250:intergenic |
| TGGGAATGAGGATGAGGGTT+TGG | 0.340368 | tig0040164:-3050 | Msa1459250:CDS |
| GCTAAGGTTTCTCCTGTTGA+TGG | 0.352088 | tig0040164:+3619 | Msa1459250:intergenic |
| CGGAGGGGATTTGGTGGGTC+TGG | 0.354612 | tig0040164:-3205 | Msa1459250:CDS |
| AAGAAGAAAGGGAAGAGAAC+TGG | 0.357563 | tig0040164:-3010 | None:intergenic |
| AAACAGTCACACGCGCTATA+CGG | 0.360032 | tig0040164:+3512 | Msa1459250:intergenic |
| AACAACAAAGCACCATCAAC+AGG | 0.364820 | tig0040164:-3631 | Msa1459250:CDS |
| ATGAGGAGGAAGAGAATGAT+AGG | 0.378643 | tig0040164:-3153 | Msa1459250:CDS |
| CCAAATCCCCTCCGCTTCTT+CGG | 0.380947 | tig0040164:+3214 | Msa1459250:intergenic |
| GAGGAATGGGAATGAGGATG+AGG | 0.389262 | tig0040164:-3056 | Msa1459250:CDS |
| GATTTGGTTGTTGTTGTTGT+TGG | 0.390124 | tig0040164:+3684 | Msa1459250:intergenic |
| AGAGATTGTTGGGGAGGAAT+GGG | 0.413656 | tig0040164:-3069 | Msa1459250:CDS |
| GCGGTTTGAGGAAGATAATT+GGG | 0.423053 | tig0040164:-3119 | Msa1459250:CDS |
| GGAGAAGAGAGTGTGGAGAT+CGG | 0.426897 | tig0040164:+3543 | Msa1459250:intergenic |
| GGAGCTGATGAGAGATTGTT+GGG | 0.428858 | tig0040164:-3079 | Msa1459250:CDS |
| GTTGTTGTTGGTGGTGGTGG+TGG | 0.432119 | tig0040164:+3696 | Msa1459250:intergenic |
| GAGAGATTGTTGGGGAGGAA+TGG | 0.433014 | tig0040164:-3070 | Msa1459250:CDS |
| AGAAGAGGAGGAAGAAGAAA+GGG | 0.435798 | tig0040164:-3021 | Msa1459250:CDS |
| TTCGGCTGCGGCCTCGCCCT+CGG | 0.435938 | tig0040164:+3232 | None:intergenic |
| AGAAGAAAGGGAAGAGAACT+GGG | 0.445138 | tig0040164:-3009 | None:intergenic |
| GTGGAGATCGGAGTTAGTTA+GGG | 0.445278 | tig0040164:+3555 | Msa1459250:intergenic |
| GGCGCGTTGCGCGTCGTGAC+GGG | 0.452642 | tig0040164:+3435 | Msa1459250:intergenic |
| CACACTCTCTTCTCCACCTT+CGG | 0.461917 | tig0040164:-3535 | Msa1459250:CDS |
| AAGAAGAGGAGGAAGAAGAA+AGG | 0.467945 | tig0040164:-3022 | Msa1459250:CDS |
| GAGTGTCCTAAGAATCAGTT+GGG | 0.469055 | tig0040164:-3256 | Msa1459250:CDS |
| CGAGGCCGCAGCCGAAGAAG+CGG | 0.473554 | tig0040164:-3225 | Msa1459250:CDS |
| GACCCGCTTCTTTATAAACT+CGG | 0.477110 | tig0040164:+3336 | Msa1459250:intergenic |
| GGGGATTTGGTGGGTCTGGA+TGG | 0.477888 | tig0040164:-3201 | Msa1459250:CDS |
| GATTGGTGCGGAGCGGTTTG+AGG | 0.481268 | tig0040164:-3131 | Msa1459250:CDS |
| AAGAGAAGAGGAGGGTGATG+AGG | 0.487030 | tig0040164:-3170 | Msa1459250:CDS |
| AAAGAAGCGGGTCTATAATA+CGG | 0.502016 | tig0040164:-3326 | Msa1459250:CDS |
| GGCCGCAGCCGAAGAAGCGG+AGG | 0.505309 | tig0040164:-3222 | Msa1459250:CDS |
| TGGAGCTGATGAGAGATTGT+TGG | 0.506357 | tig0040164:-3080 | Msa1459250:CDS |
| TGGGCTTCTGTGGTGGATGA+TGG | 0.506642 | tig0040164:-3100 | Msa1459250:CDS |
| CCCCTCCGCTTCTTCGGCTG+CGG | 0.507896 | tig0040164:+3220 | Msa1459250:intergenic |
| GAGTAAAGAAAGAGAAGAGG+AGG | 0.509297 | tig0040164:-3179 | Msa1459250:CDS |
| AGAAGAGGAGGGTGATGAGG+AGG | 0.511201 | tig0040164:-3167 | Msa1459250:CDS |
| CTAAGAATCAGTTGGGGCCG+AGG | 0.513367 | tig0040164:-3249 | Msa1459250:CDS |
| CGGGTCTATAATACGGAGAC+TGG | 0.513875 | tig0040164:-3319 | Msa1459250:CDS |
| GTTGGGGAGGAATGGGAATG+AGG | 0.515444 | tig0040164:-3062 | Msa1459250:CDS |
| AAGAAGCGGAGGGGATTTGG+TGG | 0.519949 | tig0040164:-3211 | Msa1459250:CDS |
| GAGGAAGAGAATGATAGGAT+TGG | 0.536314 | tig0040164:-3148 | Msa1459250:CDS |
| AGGAATGGGAATGAGGATGA+GGG | 0.539128 | tig0040164:-3055 | Msa1459250:CDS |
| GTTTGGATGATAAGAAGAGG+AGG | 0.540664 | tig0040164:-3033 | Msa1459250:CDS |
| TTGAGGATGAAGCGCAGAAA+CGG | 0.549990 | tig0040164:+3728 | Msa1459250:intergenic |
| AGGGTTTGGATGATAAGAAG+AGG | 0.553135 | tig0040164:-3036 | Msa1459250:CDS |
| CTGATGAGAGATTGTTGGGG+AGG | 0.555442 | tig0040164:-3075 | Msa1459250:CDS |
| TCCCGAGTTTATAAAGAAGC+GGG | 0.556257 | tig0040164:-3338 | Msa1459250:CDS |
| ACCCGCTTCTTTATAAACTC+GGG | 0.558099 | tig0040164:+3337 | Msa1459250:intergenic |
| GCCGCAGCCGAAGAAGCGGA+GGG | 0.570976 | tig0040164:-3221 | Msa1459250:CDS |
| CTCCCGAGTTTATAAAGAAG+CGG | 0.578728 | tig0040164:-3339 | Msa1459250:CDS |
| TAAGAATCAGTTGGGGCCGA+GGG | 0.580052 | tig0040164:-3248 | Msa1459250:CDS |
| ATGGAGTAAAGAAAGAGAAG+AGG | 0.580144 | tig0040164:-3182 | Msa1459250:CDS |
| CTTCTTATTCATCTCAGTCA+CGG | 0.582423 | tig0040164:+3414 | Msa1459250:intergenic |
| AGTAAAGAAAGAGAAGAGGA+GGG | 0.582542 | tig0040164:-3178 | Msa1459250:CDS |
| TGAGTGTCCTAAGAATCAGT+TGG | 0.584639 | tig0040164:-3257 | Msa1459250:CDS |
| GGAAGATAATTGGGCTTCTG+TGG | 0.587135 | tig0040164:-3110 | Msa1459250:CDS |
| CGAAGGTGGAGAAGAGAGTG+TGG | 0.605302 | tig0040164:+3536 | Msa1459250:intergenic |
| CTCGGCTTAAGCGCGTGTGA+CGG | 0.614525 | tig0040164:+3482 | Msa1459250:intergenic |
| AGATAATTGGGCTTCTGTGG+TGG | 0.619293 | tig0040164:-3107 | Msa1459250:CDS |
| AGAAGCGGAGGGGATTTGGT+GGG | 0.621026 | tig0040164:-3210 | Msa1459250:CDS |
| CGTCACACGCGCTTAAGCCG+AGG | 0.628978 | tig0040164:-3481 | Msa1459250:CDS |
| ATGATAGGATTGGTGCGGAG+CGG | 0.655795 | tig0040164:-3138 | Msa1459250:CDS |
| AGAGAATGATAGGATTGGTG+CGG | 0.662791 | tig0040164:-3143 | Msa1459250:CDS |
| ATTGAATAAAAGCTACACCT+CGG | 0.669611 | tig0040164:+3464 | Msa1459250:intergenic |
| CCGCAGCCGAAGAAGCGGAG+GGG | 0.678407 | tig0040164:-3220 | Msa1459250:CDS |
| GAGCTGATGAGAGATTGTTG+GGG | 0.710970 | tig0040164:-3078 | Msa1459250:CDS |
| AGTGTCCTAAGAATCAGTTG+GGG | 0.789780 | tig0040164:-3255 | Msa1459250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAATAAGAAGATTTTGAA+TGG | - | tig0040164:3408-3427 | Msa1459250:CDS | 20.0% |
| !!! | ATGAATAAGAAGATTTTGAA+TGG | - | tig0040164:3408-3427 | Msa1459250:CDS | 20.0% |
| !! | ATCTAGATTTGAAACGTATA+TGG | + | tig0040164:3232-3251 | Msa1459250:intergenic | 25.0% |
| !! | ATAAGAAGATTTTGAATGGT+AGG | - | tig0040164:3412-3431 | Msa1459250:CDS | 25.0% |
| !! | ATCTAGATTTGAAACGTATA+TGG | + | tig0040164:3232-3251 | Msa1459250:intergenic | 25.0% |
| !! | ATAAGAAGATTTTGAATGGT+AGG | - | tig0040164:3412-3431 | Msa1459250:CDS | 25.0% |
| !! | TTGATTTTGAGGATTGGATT+TGG | + | tig0040164:3146-3165 | Msa0105780:intergenic | 30.0% |
| !! | TGTTGTTTGATTTTGAGGAT+TGG | + | tig0040164:3152-3171 | Msa0105780:intergenic | 30.0% |
| !!! | GTTGTTGTTGTTTGATTTTG+AGG | + | tig0040164:3157-3176 | Msa0105780:intergenic | 30.0% |
| !! | ACGTATATGGTTGATTTTGA+TGG | + | tig0040164:3219-3238 | Msa1459250:intergenic | 30.0% |
| ATTGAATAAAAGCTACACCT+CGG | + | tig0040164:3350-3369 | Msa1459250:intergenic | 30.0% | |
| !! | TTGATTTTGAGGATTGGATT+TGG | + | tig0040164:3146-3165 | Msa1459250:intergenic | 30.0% |
| !! | TGTTGTTTGATTTTGAGGAT+TGG | + | tig0040164:3152-3171 | Msa1459250:intergenic | 30.0% |
| !!! | GTTGTTGTTGTTTGATTTTG+AGG | + | tig0040164:3157-3176 | Msa1459250:intergenic | 30.0% |
| !! | ACGTATATGGTTGATTTTGA+TGG | + | tig0040164:3219-3238 | Msa1459250:intergenic | 30.0% |
| ATTGAATAAAAGCTACACCT+CGG | + | tig0040164:3350-3369 | Msa1459250:intergenic | 30.0% | |
| ! | GATTTGGTTGTTGTTGTTGT+TGG | + | tig0040164:3130-3149 | Msa0105780:intergenic | 35.0% |
| CTTCTTATTCATCTCAGTCA+CGG | + | tig0040164:3400-3419 | Msa1459250:intergenic | 35.0% | |
| AAAGAAGCGGGTCTATAATA+CGG | - | tig0040164:3485-3504 | Msa1459250:CDS | 35.0% | |
| ATGGAGTAAAGAAAGAGAAG+AGG | - | tig0040164:3629-3648 | Msa1459250:CDS | 35.0% | |
| AGTAAAGAAAGAGAAGAGGA+GGG | - | tig0040164:3633-3652 | Msa1459250:CDS | 35.0% | |
| ! | GATTTGGTTGTTGTTGTTGT+TGG | + | tig0040164:3130-3149 | Msa1459250:intergenic | 35.0% |
| CTTCTTATTCATCTCAGTCA+CGG | + | tig0040164:3400-3419 | Msa1459250:intergenic | 35.0% | |
| AAAGAAGCGGGTCTATAATA+CGG | - | tig0040164:3485-3504 | Msa1459250:CDS | 35.0% | |
| ATGGAGTAAAGAAAGAGAAG+AGG | - | tig0040164:3629-3648 | Msa1459250:CDS | 35.0% | |
| AGTAAAGAAAGAGAAGAGGA+GGG | - | tig0040164:3633-3652 | Msa1459250:CDS | 35.0% | |
| ! | TTGGTTGTTGTTGTTGTTGG+TGG | + | tig0040164:3127-3146 | Msa0105780:intergenic | 40.0% |
| ! | AACAACAAAGCACCATCAAC+AGG | - | tig0040164:3180-3199 | Msa1459250:CDS | 40.0% |
| !!! | GGTTGATTTTGATGGTGCTA+AGG | + | tig0040164:3211-3230 | Msa1459250:intergenic | 40.0% |
| GCTTCTATTGCTGCTGATAA+TGG | - | tig0040164:3444-3463 | Msa1459250:CDS | 40.0% | |
| CTCCCGAGTTTATAAAGAAG+CGG | - | tig0040164:3472-3491 | Msa1459250:CDS | 40.0% | |
| TCCCGAGTTTATAAAGAAGC+GGG | - | tig0040164:3473-3492 | Msa1459250:CDS | 40.0% | |
| ACCCGCTTCTTTATAAACTC+GGG | + | tig0040164:3477-3496 | Msa1459250:intergenic | 40.0% | |
| GACCCGCTTCTTTATAAACT+CGG | + | tig0040164:3478-3497 | Msa1459250:intergenic | 40.0% | |
| !!! | ACTGGTTTGTGTTTTGAGTG+TGG | - | tig0040164:3510-3529 | Msa1459250:CDS | 40.0% |
| !! | GTTTGTGTTTTGAGTGTGGT+GGG | - | tig0040164:3514-3533 | Msa1459250:CDS | 40.0% |
| TGAGTGTCCTAAGAATCAGT+TGG | - | tig0040164:3554-3573 | Msa1459250:CDS | 40.0% | |
| GAGTGTCCTAAGAATCAGTT+GGG | - | tig0040164:3555-3574 | Msa1459250:CDS | 40.0% | |
| AGTGTCCTAAGAATCAGTTG+GGG | - | tig0040164:3556-3575 | Msa1459250:CDS | 40.0% | |
| GAGTAAAGAAAGAGAAGAGG+AGG | - | tig0040164:3632-3651 | Msa1459250:CDS | 40.0% | |
| ATGAGGAGGAAGAGAATGAT+AGG | - | tig0040164:3658-3677 | Msa1459250:CDS | 40.0% | |
| GAGGAAGAGAATGATAGGAT+TGG | - | tig0040164:3663-3682 | Msa1459250:CDS | 40.0% | |
| ! | AGAGAATGATAGGATTGGTG+CGG | - | tig0040164:3668-3687 | Msa1459250:CDS | 40.0% |
| AGCGGTTTGAGGAAGATAAT+TGG | - | tig0040164:3691-3710 | Msa1459250:CDS | 40.0% | |
| GCGGTTTGAGGAAGATAATT+GGG | - | tig0040164:3692-3711 | Msa1459250:CDS | 40.0% | |
| AGGGTTTGGATGATAAGAAG+AGG | - | tig0040164:3775-3794 | Msa1459250:CDS | 40.0% | |
| GTTTGGATGATAAGAAGAGG+AGG | - | tig0040164:3778-3797 | Msa1459250:CDS | 40.0% | |
| AAGAAGAGGAGGAAGAAGAA+AGG | - | tig0040164:3789-3808 | Msa1459250:CDS | 40.0% | |
| AGAAGAGGAGGAAGAAGAAA+GGG | - | tig0040164:3790-3809 | Msa1459250:CDS | 40.0% | |
| ! | TTGGTTGTTGTTGTTGTTGG+TGG | + | tig0040164:3127-3146 | Msa1459250:intergenic | 40.0% |
| ! | AACAACAAAGCACCATCAAC+AGG | - | tig0040164:3180-3199 | Msa1459250:CDS | 40.0% |
| !!! | GGTTGATTTTGATGGTGCTA+AGG | + | tig0040164:3211-3230 | Msa1459250:intergenic | 40.0% |
| GCTTCTATTGCTGCTGATAA+TGG | - | tig0040164:3444-3463 | Msa1459250:CDS | 40.0% | |
| CTCCCGAGTTTATAAAGAAG+CGG | - | tig0040164:3472-3491 | Msa1459250:CDS | 40.0% | |
| TCCCGAGTTTATAAAGAAGC+GGG | - | tig0040164:3473-3492 | Msa1459250:CDS | 40.0% | |
| ACCCGCTTCTTTATAAACTC+GGG | + | tig0040164:3477-3496 | Msa1459250:intergenic | 40.0% | |
| GACCCGCTTCTTTATAAACT+CGG | + | tig0040164:3478-3497 | Msa1459250:intergenic | 40.0% | |
| !!! | ACTGGTTTGTGTTTTGAGTG+TGG | - | tig0040164:3510-3529 | Msa1459250:CDS | 40.0% |
| !! | GTTTGTGTTTTGAGTGTGGT+GGG | - | tig0040164:3514-3533 | Msa1459250:CDS | 40.0% |
| TGAGTGTCCTAAGAATCAGT+TGG | - | tig0040164:3554-3573 | Msa1459250:CDS | 40.0% | |
| GAGTGTCCTAAGAATCAGTT+GGG | - | tig0040164:3555-3574 | Msa1459250:CDS | 40.0% | |
| AGTGTCCTAAGAATCAGTTG+GGG | - | tig0040164:3556-3575 | Msa1459250:CDS | 40.0% | |
| GAGTAAAGAAAGAGAAGAGG+AGG | - | tig0040164:3632-3651 | Msa1459250:CDS | 40.0% | |
| ATGAGGAGGAAGAGAATGAT+AGG | - | tig0040164:3658-3677 | Msa1459250:CDS | 40.0% | |
| GAGGAAGAGAATGATAGGAT+TGG | - | tig0040164:3663-3682 | Msa1459250:CDS | 40.0% | |
| ! | AGAGAATGATAGGATTGGTG+CGG | - | tig0040164:3668-3687 | Msa1459250:CDS | 40.0% |
| AGCGGTTTGAGGAAGATAAT+TGG | - | tig0040164:3691-3710 | Msa1459250:CDS | 40.0% | |
| GCGGTTTGAGGAAGATAATT+GGG | - | tig0040164:3692-3711 | Msa1459250:CDS | 40.0% | |
| AGGGTTTGGATGATAAGAAG+AGG | - | tig0040164:3775-3794 | Msa1459250:CDS | 40.0% | |
| GTTTGGATGATAAGAAGAGG+AGG | - | tig0040164:3778-3797 | Msa1459250:CDS | 40.0% | |
| AAGAAGAGGAGGAAGAAGAA+AGG | - | tig0040164:3789-3808 | Msa1459250:CDS | 40.0% | |
| AGAAGAGGAGGAAGAAGAAA+GGG | - | tig0040164:3790-3809 | Msa1459250:CDS | 40.0% | |
| TTGAGGATGAAGCGCAGAAA+CGG | + | tig0040164:3086-3105 | Msa0105780:intergenic | 45.0% | |
| ! | GTTGTTGTTGTTGTTGGTGG+TGG | + | tig0040164:3124-3143 | Msa0105780:intergenic | 45.0% |
| GCTAAGGTTTCTCCTGTTGA+TGG | + | tig0040164:3195-3214 | Msa1459250:intergenic | 45.0% | |
| GTGGAGATCGGAGTTAGTTA+GGG | + | tig0040164:3259-3278 | Msa1459250:intergenic | 45.0% | |
| TGTGGAGATCGGAGTTAGTT+AGG | + | tig0040164:3260-3279 | Msa1459250:intergenic | 45.0% | |
| AAACAGTCACACGCGCTATA+CGG | + | tig0040164:3302-3321 | Msa1459250:intergenic | 45.0% | |
| !! | GGTTTGTGTTTTGAGTGTGG+TGG | - | tig0040164:3513-3532 | Msa1459250:CDS | 45.0% |
| GGAAGATAATTGGGCTTCTG+TGG | - | tig0040164:3701-3720 | Msa1459250:CDS | 45.0% | |
| AGATAATTGGGCTTCTGTGG+TGG | - | tig0040164:3704-3723 | Msa1459250:CDS | 45.0% | |
| TGGAGCTGATGAGAGATTGT+TGG | - | tig0040164:3731-3750 | Msa1459250:CDS | 45.0% | |
| GGAGCTGATGAGAGATTGTT+GGG | - | tig0040164:3732-3751 | Msa1459250:CDS | 45.0% | |
| GAGCTGATGAGAGATTGTTG+GGG | - | tig0040164:3733-3752 | Msa1459250:CDS | 45.0% | |
| AGAGATTGTTGGGGAGGAAT+GGG | - | tig0040164:3742-3761 | Msa1459250:CDS | 45.0% | |
| AGGAATGGGAATGAGGATGA+GGG | - | tig0040164:3756-3775 | Msa1459250:CDS | 45.0% | |
| TTGAGGATGAAGCGCAGAAA+CGG | + | tig0040164:3086-3105 | Msa1459250:intergenic | 45.0% | |
| ! | GTTGTTGTTGTTGTTGGTGG+TGG | + | tig0040164:3124-3143 | Msa1459250:intergenic | 45.0% |
| GCTAAGGTTTCTCCTGTTGA+TGG | + | tig0040164:3195-3214 | Msa1459250:intergenic | 45.0% | |
| GTGGAGATCGGAGTTAGTTA+GGG | + | tig0040164:3259-3278 | Msa1459250:intergenic | 45.0% | |
| TGTGGAGATCGGAGTTAGTT+AGG | + | tig0040164:3260-3279 | Msa1459250:intergenic | 45.0% | |
| AAACAGTCACACGCGCTATA+CGG | + | tig0040164:3302-3321 | Msa1459250:intergenic | 45.0% | |
| !! | GGTTTGTGTTTTGAGTGTGG+TGG | - | tig0040164:3513-3532 | Msa1459250:CDS | 45.0% |
| GGAAGATAATTGGGCTTCTG+TGG | - | tig0040164:3701-3720 | Msa1459250:CDS | 45.0% | |
| AGATAATTGGGCTTCTGTGG+TGG | - | tig0040164:3704-3723 | Msa1459250:CDS | 45.0% | |
| TGGAGCTGATGAGAGATTGT+TGG | - | tig0040164:3731-3750 | Msa1459250:CDS | 45.0% | |
| GGAGCTGATGAGAGATTGTT+GGG | - | tig0040164:3732-3751 | Msa1459250:CDS | 45.0% | |
| GAGCTGATGAGAGATTGTTG+GGG | - | tig0040164:3733-3752 | Msa1459250:CDS | 45.0% | |
| AGAGATTGTTGGGGAGGAAT+GGG | - | tig0040164:3742-3761 | Msa1459250:CDS | 45.0% | |
| AGGAATGGGAATGAGGATGA+GGG | - | tig0040164:3756-3775 | Msa1459250:CDS | 45.0% | |
| GTCGTCTTCTTCGTCGCTAT+TGG | + | tig0040164:3049-3068 | Msa0105780:intergenic | 50.0% | |
| !! | GTTGTTGTTGTTGGTGGTGG+TGG | + | tig0040164:3121-3140 | Msa0105780:intergenic | 50.0% |
| ! | GGAGAAGAGAGTGTGGAGAT+CGG | + | tig0040164:3271-3290 | Msa1459250:intergenic | 50.0% |
| CACACTCTCTTCTCCACCTT+CGG | - | tig0040164:3276-3295 | Msa1459250:CDS | 50.0% | |
| CGGGTCTATAATACGGAGAC+TGG | - | tig0040164:3492-3511 | Msa1459250:CDS | 50.0% | |
| !! | TGTTTTGAGTGTGGTGGGAG+TGG | - | tig0040164:3519-3538 | Msa1459250:CDS | 50.0% |
| !! | GTTTTGAGTGTGGTGGGAGT+GGG | - | tig0040164:3520-3539 | Msa1459250:CDS | 50.0% |
| TAAGAATCAGTTGGGGCCGA+GGG | - | tig0040164:3563-3582 | Msa1459250:CDS | 50.0% | |
| AAGAGAAGAGGAGGGTGATG+AGG | - | tig0040164:3641-3660 | Msa1459250:CDS | 50.0% | |
| ! | ATGATAGGATTGGTGCGGAG+CGG | - | tig0040164:3673-3692 | Msa1459250:CDS | 50.0% |
| CTGATGAGAGATTGTTGGGG+AGG | - | tig0040164:3736-3755 | Msa1459250:CDS | 50.0% | |
| GAGAGATTGTTGGGGAGGAA+TGG | - | tig0040164:3741-3760 | Msa1459250:CDS | 50.0% | |
| GAGGAATGGGAATGAGGATG+AGG | - | tig0040164:3755-3774 | Msa1459250:CDS | 50.0% | |
| TGGGAATGAGGATGAGGGTT+TGG | - | tig0040164:3761-3780 | Msa1459250:CDS | 50.0% | |
| GTCGTCTTCTTCGTCGCTAT+TGG | + | tig0040164:3049-3068 | Msa1459250:intergenic | 50.0% | |
| !! | GTTGTTGTTGTTGGTGGTGG+TGG | + | tig0040164:3121-3140 | Msa1459250:intergenic | 50.0% |
| ! | GGAGAAGAGAGTGTGGAGAT+CGG | + | tig0040164:3271-3290 | Msa1459250:intergenic | 50.0% |
| CACACTCTCTTCTCCACCTT+CGG | - | tig0040164:3276-3295 | Msa1459250:CDS | 50.0% | |
| CGGGTCTATAATACGGAGAC+TGG | - | tig0040164:3492-3511 | Msa1459250:CDS | 50.0% | |
| !! | TGTTTTGAGTGTGGTGGGAG+TGG | - | tig0040164:3519-3538 | Msa1459250:CDS | 50.0% |
| !! | GTTTTGAGTGTGGTGGGAGT+GGG | - | tig0040164:3520-3539 | Msa1459250:CDS | 50.0% |
| TAAGAATCAGTTGGGGCCGA+GGG | - | tig0040164:3563-3582 | Msa1459250:CDS | 50.0% | |
| AAGAGAAGAGGAGGGTGATG+AGG | - | tig0040164:3641-3660 | Msa1459250:CDS | 50.0% | |
| ! | ATGATAGGATTGGTGCGGAG+CGG | - | tig0040164:3673-3692 | Msa1459250:CDS | 50.0% |
| CTGATGAGAGATTGTTGGGG+AGG | - | tig0040164:3736-3755 | Msa1459250:CDS | 50.0% | |
| GAGAGATTGTTGGGGAGGAA+TGG | - | tig0040164:3741-3760 | Msa1459250:CDS | 50.0% | |
| GAGGAATGGGAATGAGGATG+AGG | - | tig0040164:3755-3774 | Msa1459250:CDS | 50.0% | |
| TGGGAATGAGGATGAGGGTT+TGG | - | tig0040164:3761-3780 | Msa1459250:CDS | 50.0% | |
| !! | TTGGTGGTGGTGGTGGTGTT+GGG | + | tig0040164:3111-3130 | Msa0105780:intergenic | 55.0% |
| !! | GTTGTTGTTGGTGGTGGTGG+TGG | + | tig0040164:3118-3137 | Msa0105780:intergenic | 55.0% |
| CGAAGGTGGAGAAGAGAGTG+TGG | + | tig0040164:3278-3297 | Msa1459250:intergenic | 55.0% | |
| ! | CTCGGCCCCAACTGATTCTT+AGG | + | tig0040164:3564-3583 | Msa1459250:intergenic | 55.0% |
| CTAAGAATCAGTTGGGGCCG+AGG | - | tig0040164:3562-3581 | Msa1459250:CDS | 55.0% | |
| CCAAATCCCCTCCGCTTCTT+CGG | + | tig0040164:3600-3619 | Msa1459250:intergenic | 55.0% | |
| AAGAAGCGGAGGGGATTTGG+TGG | - | tig0040164:3600-3619 | Msa1459250:CDS | 55.0% | |
| ! | AGAAGCGGAGGGGATTTGGT+GGG | - | tig0040164:3601-3620 | Msa1459250:CDS | 55.0% |
| AGAAGAGGAGGGTGATGAGG+AGG | - | tig0040164:3644-3663 | Msa1459250:CDS | 55.0% | |
| !! | TGGGCTTCTGTGGTGGATGA+TGG | - | tig0040164:3711-3730 | Msa1459250:CDS | 55.0% |
| GTTGGGGAGGAATGGGAATG+AGG | - | tig0040164:3749-3768 | Msa1459250:CDS | 55.0% | |
| !! | TTGGTGGTGGTGGTGGTGTT+GGG | + | tig0040164:3111-3130 | Msa1459250:intergenic | 55.0% |
| !! | GTTGTTGTTGGTGGTGGTGG+TGG | + | tig0040164:3118-3137 | Msa1459250:intergenic | 55.0% |
| CGAAGGTGGAGAAGAGAGTG+TGG | + | tig0040164:3278-3297 | Msa1459250:intergenic | 55.0% | |
| ! | CTCGGCCCCAACTGATTCTT+AGG | + | tig0040164:3564-3583 | Msa1459250:intergenic | 55.0% |
| CTAAGAATCAGTTGGGGCCG+AGG | - | tig0040164:3562-3581 | Msa1459250:CDS | 55.0% | |
| CCAAATCCCCTCCGCTTCTT+CGG | + | tig0040164:3600-3619 | Msa1459250:intergenic | 55.0% | |
| AAGAAGCGGAGGGGATTTGG+TGG | - | tig0040164:3600-3619 | Msa1459250:CDS | 55.0% | |
| ! | AGAAGCGGAGGGGATTTGGT+GGG | - | tig0040164:3601-3620 | Msa1459250:CDS | 55.0% |
| AGAAGAGGAGGGTGATGAGG+AGG | - | tig0040164:3644-3663 | Msa1459250:CDS | 55.0% | |
| !! | TGGGCTTCTGTGGTGGATGA+TGG | - | tig0040164:3711-3730 | Msa1459250:CDS | 55.0% |
| GTTGGGGAGGAATGGGAATG+AGG | - | tig0040164:3749-3768 | Msa1459250:CDS | 55.0% | |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | + | tig0040164:3110-3129 | Msa0105780:intergenic | 60.0% |
| !! | GTTGGTGGTGGTGGTGGTGT+TGG | + | tig0040164:3112-3131 | Msa0105780:intergenic | 60.0% |
| CTCGGCTTAAGCGCGTGTGA+CGG | + | tig0040164:3332-3351 | Msa1459250:intergenic | 60.0% | |
| CCGAAGAAGCGGAGGGGATT+TGG | - | tig0040164:3597-3616 | Msa1459250:CDS | 60.0% | |
| !! | GGGGATTTGGTGGGTCTGGA+TGG | - | tig0040164:3610-3629 | Msa1459250:CDS | 60.0% |
| GATTGGTGCGGAGCGGTTTG+AGG | - | tig0040164:3680-3699 | Msa1459250:CDS | 60.0% | |
| !! | TGGTGGTGGTGGTGGTGTTG+GGG | + | tig0040164:3110-3129 | Msa1459250:intergenic | 60.0% |
| !! | GTTGGTGGTGGTGGTGGTGT+TGG | + | tig0040164:3112-3131 | Msa1459250:intergenic | 60.0% |
| CTCGGCTTAAGCGCGTGTGA+CGG | + | tig0040164:3332-3351 | Msa1459250:intergenic | 60.0% | |
| CCGAAGAAGCGGAGGGGATT+TGG | - | tig0040164:3597-3616 | Msa1459250:CDS | 60.0% | |
| !! | GGGGATTTGGTGGGTCTGGA+TGG | - | tig0040164:3610-3629 | Msa1459250:CDS | 60.0% |
| GATTGGTGCGGAGCGGTTTG+AGG | - | tig0040164:3680-3699 | Msa1459250:CDS | 60.0% | |
| ! | GGTGGTGGTGTTGGGGGTTG+AGG | + | tig0040164:3103-3122 | Msa0105780:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGTTGG+GGG | + | tig0040164:3109-3128 | Msa0105780:intergenic | 65.0% |
| ACGCGCTATACGGCCGAAGG+TGG | + | tig0040164:3292-3311 | Msa1459250:intergenic | 65.0% | |
| CACACGCGCTATACGGCCGA+AGG | + | tig0040164:3295-3314 | Msa1459250:intergenic | 65.0% | |
| CGTCACACGCGCTTAAGCCG+AGG | - | tig0040164:3330-3349 | Msa1459250:CDS | 65.0% | |
| !! | CGGAGGGGATTTGGTGGGTC+TGG | - | tig0040164:3606-3625 | Msa1459250:CDS | 65.0% |
| ! | GGTGGTGGTGTTGGGGGTTG+AGG | + | tig0040164:3103-3122 | Msa1459250:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGGTGTTGG+GGG | + | tig0040164:3109-3128 | Msa1459250:intergenic | 65.0% |
| ACGCGCTATACGGCCGAAGG+TGG | + | tig0040164:3292-3311 | Msa1459250:intergenic | 65.0% | |
| CACACGCGCTATACGGCCGA+AGG | + | tig0040164:3295-3314 | Msa1459250:intergenic | 65.0% | |
| CGTCACACGCGCTTAAGCCG+AGG | - | tig0040164:3330-3349 | Msa1459250:CDS | 65.0% | |
| !! | CGGAGGGGATTTGGTGGGTC+TGG | - | tig0040164:3606-3625 | Msa1459250:CDS | 65.0% |
| ATCAGTTGGGGCCGAGGGCG+AGG | - | tig0040164:3568-3587 | Msa1459250:CDS | 70.0% | |
| CGAGGCCGCAGCCGAAGAAG+CGG | - | tig0040164:3586-3605 | Msa1459250:CDS | 70.0% | |
| GCCGCAGCCGAAGAAGCGGA+GGG | - | tig0040164:3590-3609 | Msa1459250:CDS | 70.0% | |
| CCCCTCCGCTTCTTCGGCTG+CGG | + | tig0040164:3594-3613 | Msa1459250:intergenic | 70.0% | |
| CCGCAGCCGAAGAAGCGGAG+GGG | - | tig0040164:3591-3610 | Msa1459250:CDS | 70.0% | |
| ATCAGTTGGGGCCGAGGGCG+AGG | - | tig0040164:3568-3587 | Msa1459250:CDS | 70.0% | |
| CGAGGCCGCAGCCGAAGAAG+CGG | - | tig0040164:3586-3605 | Msa1459250:CDS | 70.0% | |
| GCCGCAGCCGAAGAAGCGGA+GGG | - | tig0040164:3590-3609 | Msa1459250:CDS | 70.0% | |
| CCCCTCCGCTTCTTCGGCTG+CGG | + | tig0040164:3594-3613 | Msa1459250:intergenic | 70.0% | |
| CCGCAGCCGAAGAAGCGGAG+GGG | - | tig0040164:3591-3610 | Msa1459250:CDS | 70.0% | |
| GGCGCGTTGCGCGTCGTGAC+GGG | + | tig0040164:3379-3398 | Msa1459250:intergenic | 75.0% | |
| CGGCGCGTTGCGCGTCGTGA+CGG | + | tig0040164:3380-3399 | Msa1459250:intergenic | 75.0% | |
| TTCGGCTGCGGCCTCGCCCT+CGG | + | tig0040164:3582-3601 | Msa1459250:intergenic | 75.0% | |
| GGCCGCAGCCGAAGAAGCGG+AGG | - | tig0040164:3589-3608 | Msa1459250:CDS | 75.0% | |
| GGCGCGTTGCGCGTCGTGAC+GGG | + | tig0040164:3379-3398 | Msa1459250:intergenic | 75.0% | |
| CGGCGCGTTGCGCGTCGTGA+CGG | + | tig0040164:3380-3399 | Msa1459250:intergenic | 75.0% | |
| TTCGGCTGCGGCCTCGCCCT+CGG | + | tig0040164:3582-3601 | Msa1459250:intergenic | 75.0% | |
| GGCCGCAGCCGAAGAAGCGG+AGG | - | tig0040164:3589-3608 | Msa1459250:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040164 | gene | 3012 | 3821 | 3012 | ID=Msa1459250;Name=Msa1459250 |
| tig0040164 | mRNA | 3012 | 3821 | 3012 | ID=Msa1459250-mRNA-1;Parent=Msa1459250;Name=Msa1459250-mRNA-1;_AED=0.16;_eAED=0.75;_QI=0|-1|0|1|-1|1|1|0|270 |
| tig0040164 | exon | 3012 | 3821 | 3012 | ID=Msa1459250-mRNA-1:exon:22190;Parent=Msa1459250-mRNA-1 |
| tig0040164 | CDS | 3012 | 3821 | 3012 | ID=Msa1459250-mRNA-1:cds;Parent=Msa1459250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
