AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007440 MtrunA17_Chr1g0148371 95.434 876 36 2 1 876 1 872 0.0 1449
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007440 AT3G49601.1 56.250 208 75 4 1 202 1 198 2.18e-55 202

Find 277 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTAGCCTTTACCTTTAC+TGG 0.130821 1_1:-10708681 None:intergenic
GTGCCGATTCAGATATTATT+TGG 0.145280 1_1:-10706028 None:intergenic
TGAACTGAAAACATTGTATT+TGG 0.174540 1_1:-10710578 None:intergenic
TTGAGGGATGAAGACGATTT+TGG 0.202781 1_1:+10710130 Msa0007440:CDS
GAAATGATAATGATTATAAA+AGG 0.232978 1_1:+10709504 Msa0007440:CDS
CAAGAGATGGAAAGCATAAA+AGG 0.234081 1_1:+10709576 Msa0007440:CDS
TCTTACTGGACCACAGTATT+TGG 0.251086 1_1:-10710618 None:intergenic
CTGTCATTTATTTCCTCCTT+TGG 0.263768 1_1:-10709065 None:intergenic
GATTCCATTATAATCGCTTT+TGG 0.268972 1_1:+10706107 Msa0007440:five_prime_UTR
TTCAACACTTTCTTAATAAT+AGG 0.288072 1_1:-10710774 None:intergenic
ATAGAGATAGAGATAGAGAT+AGG 0.300830 1_1:+10709231 Msa0007440:CDS
TTGAGGGATGGGGATGATTA+TGG 0.306717 1_1:+10709773 Msa0007440:CDS
ATTGTTTGACTTCTAGAATC+TGG 0.313643 1_1:-10709179 None:intergenic
CATTGGTACCAGACCCTCTT+GGG 0.314345 1_1:-10706408 None:intergenic
GACAAGACAAACATGTTAAA+AGG 0.325484 1_1:+10708928 Msa0007440:CDS
ACTGAAATCTCTGTCCAAAA+AGG 0.326245 1_1:-10708304 None:intergenic
TTTCCTTTCTAGCAGCAATT+TGG 0.327828 1_1:-10708137 None:intergenic
TCTAGGGATGGGGATGATTA+TGG 0.332132 1_1:+10709953 Msa0007440:CDS
ATACCGACTATCCCTCTTAC+TGG 0.336030 1_1:-10710632 None:intergenic
ATGAAGAAAGGAAGAACTTA+AGG 0.338628 1_1:+10709900 Msa0007440:CDS
ATGGAGAAAGAAAGAGCTTA+AGG 0.341025 1_1:+10709972 Msa0007440:CDS
TGCCGATTCAGATATTATTT+GGG 0.346881 1_1:-10706027 None:intergenic
TTGGAGAAAGAAAGCACTTA+AGG 0.349814 1_1:+10710149 Msa0007440:CDS
TTAGAGAAACAAAGATTAGA+AGG 0.350459 1_1:+10710077 Msa0007440:CDS
ATGGAGAAAGAAAGAACTTA+AGG 0.352771 1_1:+10709792 Msa0007440:CDS
TCAGCTGAATCTGCCGCTTT+CGG 0.354578 1_1:-10706564 None:intergenic
GAGAAAGAAGGCATTATAGA+AGG 0.355736 1_1:+10710458 Msa0007440:CDS
AACAATATGTACAACGGAAT+CGG 0.356790 1_1:+10706376 Msa0007440:exon
AGTAGCAGTGATAGTGAAAC+TGG 0.362833 1_1:+10708975 Msa0007440:CDS
TGAAAACGATGGATCCAATA+TGG 0.363035 1_1:+10706690 Msa0007440:CDS
TTGAGTTCTTTCTTTCTTTG+CGG 0.366491 1_1:-10710291 None:intergenic
AAACACTCACTTATCCATAT+TGG 0.373034 1_1:-10706704 None:intergenic
ATCATCCTTGTACTTTCTCT+TGG 0.374078 1_1:-10708418 None:intergenic
AGAGAGGCAGAAATTATAAC+AGG 0.378338 1_1:+10709411 Msa0007440:CDS
CGTTCCAAAAGCGATTATAA+TGG 0.382920 1_1:-10706111 None:intergenic
GATGGACAAGATAGGAAGTT+TGG 0.385688 1_1:+10709278 Msa0007440:CDS
TGAAGATAAGCTGATTGATC+AGG 0.385864 1_1:+10706600 Msa0007440:CDS
TCATCCTTGTACTTTCTCTT+GGG 0.389930 1_1:-10708417 None:intergenic
TCAGCAACCTTCGAAGTTCT+CGG 0.393476 1_1:-10706463 None:intergenic
GGGAAAATAAAGGCTGTAAG+AGG 0.394090 1_1:+10710527 Msa0007440:three_prime_UTR
GGCAGTGTTAGGCATGCTTC+AGG 0.402014 1_1:+10708906 Msa0007440:CDS
AGTGTTGAATGTTCCAAGAT+TGG 0.406367 1_1:+10710788 Msa0007440:three_prime_UTR
GATTCTTTAAGAAAATCATA+TGG 0.409706 1_1:+10709137 Msa0007440:CDS
TATGGAAGAACTAGAAAAGT+TGG 0.411014 1_1:+10709020 Msa0007440:CDS
TGGAGAAAGAAAGCACTTAA+GGG 0.413260 1_1:+10710150 Msa0007440:CDS
TAGGAAGAGCGGGAAAATAA+AGG 0.419233 1_1:+10710517 Msa0007440:exon
AGAGGTAATGCTGCAGGAAA+AGG 0.422438 1_1:+10709086 Msa0007440:CDS
TTTCAGTCGGAAGAAACAAT+TGG 0.425008 1_1:+10708320 Msa0007440:CDS
TGAAAATATGAAGGGGTTTG+AGG 0.438018 1_1:+10706483 Msa0007440:CDS
AGAAAGAGCTTAAGGGATGA+GGG 0.439138 1_1:+10709980 Msa0007440:CDS
TGGAGAAAGAAAGAGCTTAA+GGG 0.439219 1_1:+10709973 Msa0007440:CDS
GAAGGAAGACCTTGAGGGAT+GGG 0.445522 1_1:+10709762 Msa0007440:CDS
TTGGACGAATTGATCGGAAT+AGG 0.455169 1_1:+10709453 Msa0007440:CDS
GAAAATATGAAGGGGTTTGA+GGG 0.457175 1_1:+10706484 Msa0007440:CDS
CCATTGGTACCAGACCCTCT+TGG 0.460535 1_1:-10706409 None:intergenic
TCCCCAAATAATATCTGAAT+CGG 0.460847 1_1:+10706025 Msa0007440:five_prime_UTR
TCACCAAATTGCTGCTAGAA+AGG 0.462437 1_1:+10708134 Msa0007440:CDS
CCCTAGAGTTCTTCTCTCCT+CGG 0.463301 1_1:-10710042 None:intergenic
CTAAGCACCGCAAGAAAGGC+AGG 0.463539 1_1:+10708583 Msa0007440:CDS
GGGATGATGATCGTGGAGAA+AGG 0.464631 1_1:+10710479 Msa0007440:CDS
AAATACTGTGGTCCAGTAAG+AGG 0.465571 1_1:+10710620 Msa0007440:three_prime_UTR
AACAAAGATTAGAAGGATTG+AGG 0.471892 1_1:+10710084 Msa0007440:CDS
ACAATATGTACAACGGAATC+GGG 0.472478 1_1:+10706377 Msa0007440:exon
AAGAAAGAGCTTAAGGGATG+AGG 0.473531 1_1:+10709979 Msa0007440:CDS
TGGAGAAAGAAAGAACTTAA+GGG 0.474386 1_1:+10709793 Msa0007440:CDS
AGAAAAGGAGCTCTAGGGAT+GGG 0.475231 1_1:+10709942 Msa0007440:CDS
AATACAGATGGGAATGATGA+AGG 0.476248 1_1:+10708216 Msa0007440:CDS
TAGTGCCAAGGTTGATGGAT+TGG 0.477705 1_1:+10709115 Msa0007440:CDS
AAGAAAGAACTTAAGGGATG+AGG 0.478065 1_1:+10709799 Msa0007440:CDS
AGTACGGATGATGAGAAAAC+AGG 0.480046 1_1:+10708459 Msa0007440:CDS
AGAAAGAACTTAAGGGATGA+GGG 0.480455 1_1:+10709800 Msa0007440:CDS
TGAAGAGGCGAGGAATAACT+TGG 0.480606 1_1:+10706654 Msa0007440:CDS
ATTTCAAGTTGAGTTCCAAC+TGG 0.482563 1_1:+10710731 Msa0007440:three_prime_UTR
AATGAAGATGATTCAAGAGA+TGG 0.482878 1_1:+10709563 Msa0007440:CDS
CAGAAGGGAGTAGGAAGAGC+GGG 0.483254 1_1:+10710507 Msa0007440:exon
TTAAGGGATGAGGGTGGCAG+AGG 0.484214 1_1:+10709989 Msa0007440:CDS
TGAAGAAAGGAAGAACTTAA+GGG 0.484449 1_1:+10709901 Msa0007440:CDS
GTGGAGAGAAAAGGAGCTCT+AGG 0.485273 1_1:+10709936 Msa0007440:CDS
TGGACGAATTGATCGGAATA+GGG 0.486136 1_1:+10709454 Msa0007440:CDS
GAAACATTGAAAGCTGCTCT+TGG 0.486237 1_1:+10708168 Msa0007440:CDS
AGGATCAATATATCCAATCT+TGG 0.486286 1_1:-10710801 None:intergenic
TAAAGGTAAAGGCTAGTAAG+AGG 0.487578 1_1:+10708685 Msa0007440:CDS
TAGAAGTCAAACAATAGCTA+AGG 0.489116 1_1:+10709187 Msa0007440:CDS
ATTCTTTAAGAAAATCATAT+GGG 0.491036 1_1:+10709138 Msa0007440:CDS
AATAAAGAACTCTAGGTATG+AGG 0.492130 1_1:+10710228 Msa0007440:CDS
GCTGATGAATTAAATACAGA+TGG 0.493661 1_1:+10708204 Msa0007440:CDS
ACTCTGGTAGAGGCAGTGTT+AGG 0.494351 1_1:+10708895 Msa0007440:CDS
ATGATGAGAAAACAGGTAGA+AGG 0.494540 1_1:+10708466 Msa0007440:CDS
AAGGATGAAGATTATCCTAC+AGG 0.494644 1_1:+10709668 Msa0007440:CDS
GTGGAGAAAGGAAGCACAGA+AGG 0.495191 1_1:+10710491 Msa0007440:CDS
TCTAAATCAGCTAGGATCAG+AGG 0.496676 1_1:+10709365 Msa0007440:CDS
TAGAGAAAGAAAGAACTCTC+TGG 0.497810 1_1:+10709829 Msa0007440:CDS
GAGGGAGATCAAGGTACTGC+TGG 0.500186 1_1:+10706502 Msa0007440:CDS
TTAAGGGATGGCAATGGCCG+TGG 0.501216 1_1:+10709917 Msa0007440:CDS
CTAAGCATGATGGACAAGAT+AGG 0.501729 1_1:+10709270 Msa0007440:CDS
ATCATCATGAAGGCGTGCCC+AGG 0.502347 1_1:+10708730 Msa0007440:CDS
AAATGATAATGATTATAAAA+GGG 0.503477 1_1:+10709505 Msa0007440:CDS
CACTTCACTAGTCCTACGCC+TGG 0.504019 1_1:-10708748 None:intergenic
TTACAAACCCCAAGAGGGTC+TGG 0.504419 1_1:+10706400 Msa0007440:CDS
AAGAAAGATCAGAAGGATTG+AGG 0.504787 1_1:+10709727 Msa0007440:CDS
GGTTCTATTGATGCGGACTC+TGG 0.504835 1_1:+10708879 Msa0007440:CDS
AATAATATCTGAATCGGCAC+TGG 0.504858 1_1:+10706031 Msa0007440:five_prime_UTR
GTCAAATATGCTAAGCATGA+TGG 0.504928 1_1:+10709260 Msa0007440:CDS
TCTCGGGATGGTGATGGCCG+AGG 0.505947 1_1:+10710025 Msa0007440:CDS
TACAGGAAGAAAGCACTTGA+GGG 0.506535 1_1:+10709685 Msa0007440:CDS
AGAAAAGAAGCTCTAGAGAT+GGG 0.507069 1_1:+10709870 Msa0007440:CDS
ATGGGGATGATTATGAAGAA+AGG 0.507837 1_1:+10709888 Msa0007440:CDS
TAATGATTATAAAAGGGATC+AGG 0.509329 1_1:+10709511 Msa0007440:CDS
AAGGAAGACCTTGAGGGATG+GGG 0.513937 1_1:+10709763 Msa0007440:CDS
AGAGAAGAACTCTAGGGATG+TGG 0.515242 1_1:+10710048 Msa0007440:CDS
GAAGGTTGCTGAAAATATGA+AGG 0.515977 1_1:+10706474 Msa0007440:CDS
GTGTAGAAATAAAGAACTCT+AGG 0.518740 1_1:+10710221 Msa0007440:CDS
TAGAGATAGAGATAGAGATA+GGG 0.520061 1_1:+10709232 Msa0007440:CDS
ATGGAAGAACTAGAAAAGTT+GGG 0.521877 1_1:+10709021 Msa0007440:CDS
ATACAGATGGGAATGATGAA+GGG 0.522361 1_1:+10708217 Msa0007440:CDS
TGGGAGTTCCACCCTTCTTG+TGG 0.522378 1_1:-10708398 None:intergenic
AAGAGATGGAAAGCATAAAA+GGG 0.524413 1_1:+10709577 Msa0007440:CDS
GCCGAGGAGAGAAGAACTCT+AGG 0.524654 1_1:+10710041 Msa0007440:CDS
TACTGCTGGTGTTAGTAGAA+AGG 0.524874 1_1:+10706516 Msa0007440:CDS
GAGAAAAGAAGCTCTAGAGA+TGG 0.525335 1_1:+10709869 Msa0007440:CDS
AAGGGGTTTGAGGGAGATCA+AGG 0.526411 1_1:+10706493 Msa0007440:CDS
GATGGGAATGATGAAGGGGC+TGG 0.527895 1_1:+10708222 Msa0007440:CDS
GGATTATGAAACAAGAAGGA+AGG 0.531442 1_1:+10709478 Msa0007440:CDS
GAGAAAGAGCTCAAGGGATG+AGG 0.531478 1_1:+10710336 Msa0007440:CDS
AATGACAGAGGTAATGCTGC+AGG 0.531486 1_1:+10709080 Msa0007440:CDS
GATGTTGAATCACAATCTGT+TGG 0.531914 1_1:+10709434 Msa0007440:CDS
AGAAAGAAGGCATTATAGAA+GGG 0.532131 1_1:+10710459 Msa0007440:CDS
ACATCTAAGCACCGCAAGAA+AGG 0.532339 1_1:+10708579 Msa0007440:CDS
GGAAGGAAGACCTTGAGGGA+TGG 0.533795 1_1:+10709761 Msa0007440:CDS
AAGCAGAAAACAAGGAGGTA+TGG 0.536579 1_1:+10708858 Msa0007440:CDS
CTGTCATTCATGAAAATAGC+AGG 0.536704 1_1:-10710821 None:intergenic
ATTGATGCGGACTCTGGTAG+AGG 0.536751 1_1:+10708885 Msa0007440:CDS
GAGGTAATGCTGCAGGAAAA+GGG 0.538469 1_1:+10709087 Msa0007440:CDS
GAGGAGAAAGAAAGAACTCT+CGG 0.539758 1_1:+10710008 Msa0007440:CDS
AGAGGGGATGATGAGTATCA+TGG 0.540257 1_1:+10710382 Msa0007440:CDS
ATCAGCGTCAGATTCCTCTT+CGG 0.541730 1_1:-10708805 None:intergenic
CCAAGAGGGTCTGGTACCAA+TGG 0.542448 1_1:+10706409 Msa0007440:CDS
AAGGAAGAACTCAAGGGAAG+AGG 0.544319 1_1:+10710264 Msa0007440:CDS
AAGAAAGCACTTAAGGGATG+AGG 0.545463 1_1:+10710156 Msa0007440:CDS
GGGAGGATTATGAAACAAGA+AGG 0.546874 1_1:+10709474 Msa0007440:CDS
CAAGAGGGTCTGGTACCAAT+GGG 0.547119 1_1:+10706410 Msa0007440:CDS
ACAGAGAGAGAAAGAGCTCA+AGG 0.548074 1_1:+10710329 Msa0007440:CDS
AGACACAAAGCGCCACAAGA+AGG 0.549305 1_1:+10708386 Msa0007440:CDS
AAGGAAGCACAGAAGGGAGT+AGG 0.549615 1_1:+10710498 Msa0007440:CDS
GACACAAAGCGCCACAAGAA+GGG 0.550002 1_1:+10708387 Msa0007440:CDS
GAGAAAAGGAGCTCTAGGGA+TGG 0.550005 1_1:+10709941 Msa0007440:CDS
ATGGAGAAAGAAAGCGCAGA+AGG 0.550445 1_1:+10710401 Msa0007440:CDS
GAAAAGGAGCTCTAGGGATG+GGG 0.552267 1_1:+10709943 Msa0007440:CDS
AGTGATAGTGATCGCAGGTA+TGG 0.552398 1_1:+10709002 Msa0007440:CDS
CATCCACCCTGCCTTTCTTG+CGG 0.553444 1_1:-10708590 None:intergenic
TGCAGGAAGGAAGACCTTGA+GGG 0.553552 1_1:+10709757 Msa0007440:CDS
GCAAAGAAAGAAAGAACTCA+AGG 0.557129 1_1:+10710293 Msa0007440:CDS
GAAGCACAAAACAGAAGGGA+TGG 0.557465 1_1:+10710190 Msa0007440:CDS
CACCAACAAAATTGACCAGT+TGG 0.557535 1_1:-10710746 None:intergenic
TACAGGAAGAAAGACCTTGA+GGG 0.558041 1_1:+10710114 Msa0007440:CDS
CTAAATCAGCTAGGATCAGA+GGG 0.558128 1_1:+10709366 Msa0007440:CDS
GATGAAGGGGCTGGAAACGA+AGG 0.559192 1_1:+10708231 Msa0007440:CDS
GCAAAGAAAGGAAGAACTCA+AGG 0.561372 1_1:+10710257 Msa0007440:CDS
AGGATTGAGGATGATCGTAC+AGG 0.562091 1_1:+10710097 Msa0007440:CDS
AAGGGACGAGGAAGACCGCC+GGG 0.562414 1_1:+10709595 Msa0007440:CDS
ATAGAGAAGCACAAAACAGA+AGG 0.562661 1_1:+10710185 Msa0007440:CDS
CTACAGGAAGAAAGCACTTG+AGG 0.564894 1_1:+10709684 Msa0007440:CDS
AGAATCCAATCCATCAACCT+TGG 0.565326 1_1:-10709120 None:intergenic
ATGAGGATGATCGCAAAGAA+AGG 0.565805 1_1:+10710245 Msa0007440:CDS
ATGAAGGCGTGCCCAGGCGT+AGG 0.565815 1_1:+10708736 Msa0007440:CDS
GAAGATAAGCTGATTGATCA+GGG 0.567835 1_1:+10706601 Msa0007440:CDS
GAGAAGAACTCTAGGGATGT+GGG 0.569850 1_1:+10710049 Msa0007440:CDS
AAGGTTGCTGAAAATATGAA+GGG 0.570610 1_1:+10706475 Msa0007440:CDS
AAGAACTCTCGGGATGGTGA+TGG 0.570968 1_1:+10710019 Msa0007440:CDS
TTCTTGAGCATGACCGAAAG+CGG 0.571093 1_1:+10706551 Msa0007440:CDS
CGTGAAGCCGAGAACTTCGA+AGG 0.571228 1_1:+10706456 Msa0007440:CDS
CAGTCGGAAGAAACAATTGG+AGG 0.572032 1_1:+10708323 Msa0007440:CDS
GATTATGAAACAAGAAGGAA+GGG 0.574761 1_1:+10709479 Msa0007440:CDS
AAAGGGACGAGGAAGACCGC+CGG 0.575454 1_1:+10709594 Msa0007440:CDS
AGGATTGAGGATGAACGTGC+AGG 0.578381 1_1:+10709740 Msa0007440:CDS
AAGCACAAAACAGAAGGGAT+GGG 0.579129 1_1:+10710191 Msa0007440:CDS
TATGGGAGAGATTATAAAGA+GGG 0.582883 1_1:+10709155 Msa0007440:CDS
ATTCTGATAGTGATGCTAAG+AGG 0.583073 1_1:+10708529 Msa0007440:CDS
TCAAGGGATGAGGATGTTCG+TGG 0.583178 1_1:+10710346 Msa0007440:CDS
GCAATGGCCGTGGAGAGAAA+AGG 0.583518 1_1:+10709927 Msa0007440:CDS
TGGAGAGAGAAGGCATGGAA+AGG 0.586417 1_1:+10709649 Msa0007440:CDS
GTGGGGAAAGAAAGCACAGA+GGG 0.586721 1_1:+10710365 Msa0007440:CDS
ACGGAGAAAGAAAGATCAGA+AGG 0.587778 1_1:+10709720 Msa0007440:CDS
GGTCGTGGAGAGAGAAGGCA+TGG 0.587909 1_1:+10709644 Msa0007440:CDS
CTGATGAATTAAATACAGAT+GGG 0.590577 1_1:+10708205 Msa0007440:CDS
ATGGTTATTCTAAATCAGCT+AGG 0.591198 1_1:+10709357 Msa0007440:CDS
CAAGGGATGAGGATGTTCGT+GGG 0.591261 1_1:+10710347 Msa0007440:CDS
GCCGATTCAGATATTATTTG+GGG 0.593065 1_1:-10706026 None:intergenic
AATGAAAATGAAGAAAGAGA+TGG 0.593131 1_1:+10709338 Msa0007440:CDS
ATCAGATTCATCACTACTGT+CGG 0.593798 1_1:-10708508 None:intergenic
TACAGATGGGAATGATGAAG+GGG 0.594685 1_1:+10708218 Msa0007440:CDS
AGAAGTCAAACAATAGCTAA+GGG 0.595420 1_1:+10709188 Msa0007440:CDS
AGCGAAGAGAAGTGAGCCAA+AGG 0.596644 1_1:+10709049 Msa0007440:CDS
AGTAAGAGGCATGATTCAGA+TGG 0.597582 1_1:+10708699 Msa0007440:CDS
TTATACTGAGGCTGAGATTG+CGG 0.598508 1_1:+10706624 Msa0007440:CDS
TGGAGAGAAAAGGAGCTCTA+GGG 0.599906 1_1:+10709937 Msa0007440:CDS
GACTTGAGAAGCAGAAAACA+AGG 0.600148 1_1:+10708850 Msa0007440:CDS
TCTCTGGATGGCGATGTCCG+TGG 0.600862 1_1:+10709845 Msa0007440:CDS
AGGAGAAAGAAAGAACTCTC+GGG 0.601526 1_1:+10710009 Msa0007440:CDS
AGCACAAAACAGAAGGGATG+GGG 0.601555 1_1:+10710192 Msa0007440:CDS
TGATTTCTCTTCTGATAGTG+AGG 0.602201 1_1:+10708626 Msa0007440:CDS
CCGAGGAGAGAAGAACTCTA+GGG 0.602298 1_1:+10710042 Msa0007440:CDS
ATAATCATCCCCATCCCTCA+AGG 0.602864 1_1:-10709771 None:intergenic
GGAAAATAAAGGCTGTAAGA+GGG 0.603755 1_1:+10710528 Msa0007440:three_prime_UTR
CGGAGAAGCTTGAAGAGGCG+AGG 0.603883 1_1:+10706644 Msa0007440:CDS
GTAAGAGACGAAGATGGTCG+TGG 0.605174 1_1:+10709629 Msa0007440:CDS
CAAAGAAAGAAAGAACTCAA+GGG 0.606961 1_1:+10710294 Msa0007440:CDS
ACAAAGCGCCACAAGAAGGG+TGG 0.608610 1_1:+10708390 Msa0007440:CDS
ATTGGTACCAGACCCTCTTG+GGG 0.610172 1_1:-10706407 None:intergenic
GGAGATTCTGATCATCATGA+AGG 0.612338 1_1:+10708720 Msa0007440:CDS
AGAAAGCACTTAAGGGATGA+GGG 0.614396 1_1:+10710157 Msa0007440:CDS
AATACTGTGGTCCAGTAAGA+GGG 0.617358 1_1:+10710621 Msa0007440:three_prime_UTR
GGAATCTGACGCTGATAGTG+AGG 0.617906 1_1:+10708812 Msa0007440:CDS
ATGATGGTCATGGAGAAAGA+AGG 0.618260 1_1:+10710446 Msa0007440:CDS
GAAAGGAAGAACTTAAGGGA+TGG 0.618658 1_1:+10709905 Msa0007440:CDS
AATCTGTTGGACGAATTGAT+CGG 0.619988 1_1:+10709447 Msa0007440:CDS
AACTCCCAAGAGAAAGTACA+AGG 0.620318 1_1:+10708413 Msa0007440:CDS
AAAAGCGTAAGAGACGAAGA+TGG 0.622517 1_1:+10709623 Msa0007440:CDS
AAAATCGTCTTCATCCCTCA+AGG 0.623427 1_1:-10710128 None:intergenic
GTGCAGGAAGGAAGACCTTG+AGG 0.624100 1_1:+10709756 Msa0007440:CDS
TGAAGCAGTGATTCTGATAG+CGG 0.625929 1_1:-10706070 None:intergenic
ATCTGATTCAGATAGCAGTA+CGG 0.625946 1_1:+10708443 Msa0007440:CDS
TGATAGTGATGCTAAGAGGA+AGG 0.626197 1_1:+10708533 Msa0007440:CDS
TTTGTTGTCTTATGTTTCTG+CGG 0.626276 1_1:+10710657 Msa0007440:three_prime_UTR
CTCAAGTGCTTTCTTCCTGT+AGG 0.626993 1_1:-10709683 None:intergenic
TTGAGGATGAACGTGCAGGA+AGG 0.627354 1_1:+10709744 Msa0007440:CDS
CAGAGAGAGAAAGAGCTCAA+GGG 0.628373 1_1:+10710330 Msa0007440:CDS
ATCACTGCTACTCTCATCAG+AGG 0.629147 1_1:-10708964 None:intergenic
GCAGCAGTGATAGTGATCGC+AGG 0.630849 1_1:+10708997 Msa0007440:CDS
GAGGTATGGTTCTATTGATG+CGG 0.631389 1_1:+10708872 Msa0007440:CDS
GAAAAGAAGCTCTAGAGATG+GGG 0.631448 1_1:+10709871 Msa0007440:CDS
TGGAGAAAGGAAGCACAGAA+GGG 0.632562 1_1:+10710492 Msa0007440:CDS
GTTGCTTTGAATGTACCCAT+TGG 0.633884 1_1:-10706425 None:intergenic
GAAAGAAAGAACTCTCTGGA+TGG 0.633995 1_1:+10709833 Msa0007440:CDS
ACAGAAGGGAGTAGGAAGAG+CGG 0.634481 1_1:+10710506 Msa0007440:exon
ATGAAGGGGCTGGAAACGAA+GGG 0.636206 1_1:+10708232 Msa0007440:CDS
ATATGGGAGAGATTATAAAG+AGG 0.636317 1_1:+10709154 Msa0007440:CDS
ACTTCACTAGTCCTACGCCT+GGG 0.636349 1_1:-10708747 None:intergenic
CAAAACAGAAGGGATGGGGA+TGG 0.637014 1_1:+10710196 Msa0007440:CDS
TATAGAAGGGATGATGATCG+TGG 0.640097 1_1:+10710472 Msa0007440:CDS
GTAGGACTAGTGAAGTGAAG+AGG 0.641552 1_1:+10708754 Msa0007440:CDS
TTGAGGGATGAAGATGATCA+CGG 0.641692 1_1:+10709701 Msa0007440:CDS
ATCGGGTTACAAACCCCAAG+AGG 0.642712 1_1:+10706394 Msa0007440:CDS
TGATGCTAAGAGGAAGGTCA+AGG 0.643266 1_1:+10708539 Msa0007440:CDS
AAGATGGTCGTGGAGAGAGA+AGG 0.643561 1_1:+10709639 Msa0007440:CDS
AGAGGCGAGGAATAACTTGG+AGG 0.647831 1_1:+10706657 Msa0007440:CDS
TAGAGAAGCACAAAACAGAA+GGG 0.648296 1_1:+10710186 Msa0007440:CDS
CAAACGTCATGATTCCGAAG+AGG 0.649598 1_1:+10708791 Msa0007440:CDS
GTACAGGAAGAAAGACCTTG+AGG 0.650077 1_1:+10710113 Msa0007440:CDS
TGGAGAAAGAAAGCGCAGAA+GGG 0.654591 1_1:+10710402 Msa0007440:CDS
GAAAGAAAGAACTCTCGGGA+TGG 0.661874 1_1:+10710013 Msa0007440:CDS
GCTGCAGCTGATGAAAACGA+TGG 0.664817 1_1:+10706679 Msa0007440:CDS
TGGAAAGCATAAAAGGGACG+AGG 0.666249 1_1:+10709583 Msa0007440:CDS
ACGAATTGATCGGAATAGGG+AGG 0.666293 1_1:+10709457 Msa0007440:CDS
CAAAGAAAGGAAGAACTCAA+GGG 0.668656 1_1:+10710258 Msa0007440:CDS
GTCGCGAACAATATGTACAA+CGG 0.669321 1_1:+10706370 Msa0007440:exon
AAGGGATGAGGATGTTCGTG+GGG 0.670207 1_1:+10710348 Msa0007440:CDS
GATTGCGGAGAAGCTTGAAG+AGG 0.675067 1_1:+10706639 Msa0007440:CDS
AAGAGCTTAAGGGATGAGGG+TGG 0.676066 1_1:+10709983 Msa0007440:CDS
TCGGGTTACAAACCCCAAGA+GGG 0.677908 1_1:+10706395 Msa0007440:CDS
AGGTTGCTGAAAATATGAAG+GGG 0.679407 1_1:+10706476 Msa0007440:CDS
TAAGCACCGCAAGAAAGGCA+GGG 0.680248 1_1:+10708584 Msa0007440:CDS
GGTCCAGTAAGAGGGATAGT+CGG 0.682996 1_1:+10710629 Msa0007440:three_prime_UTR
AAGAACTTAAGGGATGGCAA+TGG 0.685392 1_1:+10709911 Msa0007440:CDS
GAAGAGAAGTGAGCCAAAGG+AGG 0.686174 1_1:+10709052 Msa0007440:CDS
AGCATGAAAACCAAATACTG+TGG 0.687045 1_1:+10710608 Msa0007440:three_prime_UTR
GATAGTGAGGAAGAGAAACA+TGG 0.691643 1_1:+10708825 Msa0007440:CDS
AAGGAGGAAATAAATGACAG+AGG 0.696476 1_1:+10709068 Msa0007440:CDS
AAGACAAACATGTTAAAAGG+CGG 0.697682 1_1:+10708931 Msa0007440:CDS
GCACCGCAAGAAAGGCAGGG+TGG 0.701049 1_1:+10708587 Msa0007440:CDS
GATTGATCAGGGTTATACTG+AGG 0.707882 1_1:+10706612 Msa0007440:CDS
AATGAAACTTCTGATCAGAG+AGG 0.718112 1_1:+10709395 Msa0007440:CDS
GAGAGGCAGAAATTATAACA+GGG 0.720186 1_1:+10709412 Msa0007440:CDS
TTGAGAAGCAGAAAACAAGG+AGG 0.732407 1_1:+10708853 Msa0007440:CDS
AAGAACTTAAGGGATGAGGG+TGG 0.740111 1_1:+10709803 Msa0007440:CDS
TGGGGAAAGAAAGCACAGAG+GGG 0.758387 1_1:+10710366 Msa0007440:CDS
CGTGGGGAAAGAAAGCACAG+AGG 0.779210 1_1:+10710364 Msa0007440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATAATGATTATAAAA+GGG + chr1_1:10709505-10709524 Msa0007440:CDS 10.0%
!! TTAAATTATTATTGGTATCA+AGG - chr1_1:10707011-10707030 None:intergenic 15.0%
!!! TATAAGTATTTAGAACATAT+TGG - chr1_1:10707918-10707937 None:intergenic 15.0%
!!! ATATTTCAGATATTTTTTCA+TGG - chr1_1:10707969-10707988 None:intergenic 15.0%
!! TTCACAAAAAAAAATAGTTA+GGG - chr1_1:10708037-10708056 None:intergenic 15.0%
!! ATTCACAAAAAAAAATAGTT+AGG - chr1_1:10708038-10708057 None:intergenic 15.0%
!! ATCATTAACAAAAACTTATA+TGG + chr1_1:10708084-10708103 Msa0007440:intron 15.0%
!!! ATTCTTTAAGAAAATCATAT+GGG + chr1_1:10709138-10709157 Msa0007440:CDS 15.0%
!!! GAAATGATAATGATTATAAA+AGG + chr1_1:10709504-10709523 Msa0007440:CDS 15.0%
!!! CTATCTTCTTTCTTTTTTTA+CGG + chr1_1:10706145-10706164 Msa0007440:five_prime_UTR 20.0%
!!! TTCATTTCCGTTTTAAATTA+GGG + chr1_1:10706184-10706203 Msa0007440:intron 20.0%
!! TATGAATTTCTGTTGAAATT+AGG + chr1_1:10706278-10706297 Msa0007440:intron 20.0%
!! ATGAATTTCTGTTGAAATTA+GGG + chr1_1:10706279-10706298 Msa0007440:intron 20.0%
!! TTAAAATATTATTGGCATCA+AGG - chr1_1:10706874-10706893 None:intergenic 20.0%
!!! TCAATTTGTATTTTTTAGAC+TGG + chr1_1:10707249-10707268 Msa0007440:intron 20.0%
!!! TTAAAAACGTGTTTTTTTTC+AGG + chr1_1:10707375-10707394 Msa0007440:intron 20.0%
!!! TAAAAACGTGTTTTTTTTCA+GGG + chr1_1:10707376-10707395 Msa0007440:intron 20.0%
!!! AGAGTTGATTCTTAAAAAAT+GGG - chr1_1:10707443-10707462 None:intergenic 20.0%
!!! TAGAGTTGATTCTTAAAAAA+TGG - chr1_1:10707444-10707463 None:intergenic 20.0%
!!! TGGCTTACTTTTTTTAAAAA+TGG + chr1_1:10707509-10707528 Msa0007440:intron 20.0%
!! TAATGAATTAACTATTTCCA+CGG + chr1_1:10707681-10707700 Msa0007440:intron 20.0%
!! TAAAAGAACATCATGATTAA+TGG - chr1_1:10707790-10707809 None:intergenic 20.0%
!! GAAAAAGAAAAAGAAAAAAC+AGG - chr1_1:10707890-10707909 None:intergenic 20.0%
!! TCACAAAAAAAAATAGTTAG+GGG - chr1_1:10708036-10708055 None:intergenic 20.0%
!!! AGTTTTTGTTAATGATACTT+AGG - chr1_1:10708080-10708099 None:intergenic 20.0%
!!! AAAACTTATATGGAATTTTC+AGG + chr1_1:10708094-10708113 Msa0007440:intron 20.0%
!! AAGTAATAAAAAACCAGTAA+AGG + chr1_1:10708668-10708687 Msa0007440:CDS 20.0%
!!! GATTCTTTAAGAAAATCATA+TGG + chr1_1:10709137-10709156 Msa0007440:CDS 20.0%
!! TTCAACACTTTCTTAATAAT+AGG - chr1_1:10710777-10710796 None:intergenic 20.0%
!!! CTTCATTTCCGTTTTAAATT+AGG + chr1_1:10706183-10706202 Msa0007440:intron 25.0%
! TCAGAAACCCTAATTTAAAA+CGG - chr1_1:10706194-10706213 None:intergenic 25.0%
! TAATGAATTAACTGTTTCCA+CGG + chr1_1:10707182-10707201 Msa0007440:intron 25.0%
! GACAAAAAATATTGACATGT+TGG + chr1_1:10707214-10707233 Msa0007440:intron 25.0%
!!! TTTTTCAAGCTTAACCAAAT+GGG - chr1_1:10707338-10707357 None:intergenic 25.0%
!!! TTTTTTCAAGCTTAACCAAA+TGG - chr1_1:10707339-10707358 None:intergenic 25.0%
!! GCTTGAAAAAAGTGATTTTA+AGG + chr1_1:10707348-10707367 Msa0007440:intron 25.0%
! AATGAATTAACTATTTCCAC+GGG + chr1_1:10707682-10707701 Msa0007440:intron 25.0%
! ACTCTTCTGACAAAAATTAT+TGG + chr1_1:10707705-10707724 Msa0007440:intron 25.0%
! GACAAAAATTATTGGCATAT+TGG + chr1_1:10707713-10707732 Msa0007440:intron 25.0%
!!! GATTATTTTAAGCTCTGTTT+GGG - chr1_1:10707861-10707880 None:intergenic 25.0%
!!! TGATTATTTTAAGCTCTGTT+TGG - chr1_1:10707862-10707881 None:intergenic 25.0%
! TTATAAATGCAGTTACAGTA+AGG + chr1_1:10708004-10708023 Msa0007440:intron 25.0%
! CTGATGAATTAAATACAGAT+GGG + chr1_1:10708205-10708224 Msa0007440:CDS 25.0%
! TAAAAAACCAGTAAAGGTAA+AGG + chr1_1:10708674-10708693 Msa0007440:CDS 25.0%
! AATGAAAATGAAGAAAGAGA+TGG + chr1_1:10709338-10709357 Msa0007440:CDS 25.0%
! TAATGATTATAAAAGGGATC+AGG + chr1_1:10709511-10709530 Msa0007440:CDS 25.0%
!!! TTCCATGTTTTTTTTCATCA+TGG - chr1_1:10709541-10709560 None:intergenic 25.0%
! ATGATGAAAAAAAACATGGA+AGG + chr1_1:10709540-10709559 Msa0007440:CDS 25.0%
! TTAGAGAAACAAAGATTAGA+AGG + chr1_1:10710077-10710096 Msa0007440:CDS 25.0%
!!! AACATTGTATTTGGTTTTCT+GGG - chr1_1:10710572-10710591 None:intergenic 25.0%
!!! AAACATTGTATTTGGTTTTC+TGG - chr1_1:10710573-10710592 None:intergenic 25.0%
! TGAACTGAAAACATTGTATT+TGG - chr1_1:10710581-10710600 None:intergenic 25.0%
!! ATACAATGTTTTCAGTTCAA+AGG + chr1_1:10710582-10710601 Msa0007440:three_prime_UTR 25.0%
TCCCCAAATAATATCTGAAT+CGG + chr1_1:10706025-10706044 Msa0007440:five_prime_UTR 30.0%
!! TGCCGATTCAGATATTATTT+GGG - chr1_1:10706030-10706049 None:intergenic 30.0%
! GATTCCATTATAATCGCTTT+TGG + chr1_1:10706107-10706126 Msa0007440:five_prime_UTR 30.0%
TTAAAGCGTAGAAAACGAAA+GGG - chr1_1:10706224-10706243 None:intergenic 30.0%
ATTAAAGCGTAGAAAACGAA+AGG - chr1_1:10706225-10706244 None:intergenic 30.0%
! GGTTTCTGATATACCTTTTT+GGG + chr1_1:10706300-10706319 Msa0007440:intron 30.0%
! GTTTCTGATATACCTTTTTG+GGG + chr1_1:10706301-10706320 Msa0007440:intron 30.0%
! TTTCTGATATACCTTTTTGG+GGG + chr1_1:10706302-10706321 Msa0007440:intron 30.0%
! GGTTTCTGATATACCTTTTT+GGG + chr1_1:10706300-10706319 Msa0007440:intron 30.0%
! GTTTCTGATATACCTTTTTG+GGG + chr1_1:10706301-10706320 Msa0007440:intron 30.0%
AACAATATGTACAACGGAAT+CGG + chr1_1:10706376-10706395 Msa0007440:exon 30.0%
AAGGTTGCTGAAAATATGAA+GGG + chr1_1:10706475-10706494 Msa0007440:CDS 30.0%
AAACACTCACTTATCCATAT+TGG - chr1_1:10706707-10706726 None:intergenic 30.0%
! ATATGGATAAGTGAGTGTTT+TGG + chr1_1:10706707-10706726 Msa0007440:intron 30.0%
!! TGGATTTTGATAGTTGTGTT+AGG + chr1_1:10706727-10706746 Msa0007440:intron 30.0%
! ATTGTTGGTTAGCATGATAT+TGG + chr1_1:10706825-10706844 Msa0007440:intron 30.0%
!! TAAGTGGTTAGTTTCATGTT+AGG + chr1_1:10707136-10707155 Msa0007440:intron 30.0%
!! AAGTGGTTAGTTTCATGTTA+GGG + chr1_1:10707137-10707156 Msa0007440:intron 30.0%
AATGAATTAACTGTTTCCAC+GGG + chr1_1:10707183-10707202 Msa0007440:intron 30.0%
ATGCAATTAGACATAGTTTC+AGG + chr1_1:10707297-10707316 Msa0007440:intron 30.0%
TGCAATTAGACATAGTTTCA+GGG + chr1_1:10707298-10707317 Msa0007440:intron 30.0%
!! AGTGGTTAGTTTCATATTAG+AGG + chr1_1:10707637-10707656 Msa0007440:intron 30.0%
GCTGATGAATTAAATACAGA+TGG + chr1_1:10708204-10708223 Msa0007440:CDS 30.0%
GACAAGACAAACATGTTAAA+AGG + chr1_1:10708928-10708947 Msa0007440:CDS 30.0%
AAGACAAACATGTTAAAAGG+CGG + chr1_1:10708931-10708950 Msa0007440:CDS 30.0%
TATGGAAGAACTAGAAAAGT+TGG + chr1_1:10709020-10709039 Msa0007440:CDS 30.0%
ATGGAAGAACTAGAAAAGTT+GGG + chr1_1:10709021-10709040 Msa0007440:CDS 30.0%
ATATGGGAGAGATTATAAAG+AGG + chr1_1:10709154-10709173 Msa0007440:CDS 30.0%
TATGGGAGAGATTATAAAGA+GGG + chr1_1:10709155-10709174 Msa0007440:CDS 30.0%
!! ATTGTTTGACTTCTAGAATC+TGG - chr1_1:10709182-10709201 None:intergenic 30.0%
TAGAAGTCAAACAATAGCTA+AGG + chr1_1:10709187-10709206 Msa0007440:CDS 30.0%
AGAAGTCAAACAATAGCTAA+GGG + chr1_1:10709188-10709207 Msa0007440:CDS 30.0%
ATAGAGATAGAGATAGAGAT+AGG + chr1_1:10709231-10709250 Msa0007440:CDS 30.0%
TAGAGATAGAGATAGAGATA+GGG + chr1_1:10709232-10709251 Msa0007440:CDS 30.0%
ATGGTTATTCTAAATCAGCT+AGG + chr1_1:10709357-10709376 Msa0007440:CDS 30.0%
GATTATGAAACAAGAAGGAA+GGG + chr1_1:10709479-10709498 Msa0007440:CDS 30.0%
GACCATGATGAAAAAAAACA+TGG + chr1_1:10709536-10709555 Msa0007440:CDS 30.0%
AATGAAGATGATTCAAGAGA+TGG + chr1_1:10709563-10709582 Msa0007440:CDS 30.0%
! AAGAGATGGAAAGCATAAAA+GGG + chr1_1:10709577-10709596 Msa0007440:CDS 30.0%
ATGGAGAAAGAAAGAACTTA+AGG + chr1_1:10709792-10709811 Msa0007440:CDS 30.0%
TGGAGAAAGAAAGAACTTAA+GGG + chr1_1:10709793-10709812 Msa0007440:CDS 30.0%
ATGAAGAAAGGAAGAACTTA+AGG + chr1_1:10709900-10709919 Msa0007440:CDS 30.0%
TGAAGAAAGGAAGAACTTAA+GGG + chr1_1:10709901-10709920 Msa0007440:CDS 30.0%
AACAAAGATTAGAAGGATTG+AGG + chr1_1:10710084-10710103 Msa0007440:CDS 30.0%
GTGTAGAAATAAAGAACTCT+AGG + chr1_1:10710221-10710240 Msa0007440:CDS 30.0%
AATAAAGAACTCTAGGTATG+AGG + chr1_1:10710228-10710247 Msa0007440:CDS 30.0%
TTGAGTTCTTTCTTTCTTTG+CGG - chr1_1:10710294-10710313 None:intergenic 30.0%
CAAAGAAAGAAAGAACTCAA+GGG + chr1_1:10710294-10710313 Msa0007440:CDS 30.0%
!! AGAAAGAAGGCATTATAGAA+GGG + chr1_1:10710459-10710478 Msa0007440:CDS 30.0%
! TTTGTTGTCTTATGTTTCTG+CGG + chr1_1:10710657-10710676 Msa0007440:three_prime_UTR 30.0%
AGGATCAATATATCCAATCT+TGG - chr1_1:10710804-10710823 None:intergenic 30.0%
! GCCGATTCAGATATTATTTG+GGG - chr1_1:10706029-10706048 None:intergenic 35.0%
!! GTGCCGATTCAGATATTATT+TGG - chr1_1:10706031-10706050 None:intergenic 35.0%
AATAATATCTGAATCGGCAC+TGG + chr1_1:10706031-10706050 Msa0007440:five_prime_UTR 35.0%
CGTTCCAAAAGCGATTATAA+TGG - chr1_1:10706114-10706133 None:intergenic 35.0%
! GGGTTTCTGATATACCTTTT+TGG + chr1_1:10706299-10706318 Msa0007440:intron 35.0%
TATATCAGAAACCCCCAAAA+AGG - chr1_1:10706316-10706335 None:intergenic 35.0%
! GGGTTTCTGATATACCTTTT+TGG + chr1_1:10706299-10706318 Msa0007440:intron 35.0%
TGCAATTGAAAACCCCAAAA+AGG - chr1_1:10706339-10706358 None:intergenic 35.0%
ACAATATGTACAACGGAATC+GGG + chr1_1:10706377-10706396 Msa0007440:exon 35.0%
GAAGGTTGCTGAAAATATGA+AGG + chr1_1:10706474-10706493 Msa0007440:CDS 35.0%
AGGTTGCTGAAAATATGAAG+GGG + chr1_1:10706476-10706495 Msa0007440:CDS 35.0%
TGAAAATATGAAGGGGTTTG+AGG + chr1_1:10706483-10706502 Msa0007440:CDS 35.0%
GAAAATATGAAGGGGTTTGA+GGG + chr1_1:10706484-10706503 Msa0007440:CDS 35.0%
TGAAGATAAGCTGATTGATC+AGG + chr1_1:10706600-10706619 Msa0007440:CDS 35.0%
GAAGATAAGCTGATTGATCA+GGG + chr1_1:10706601-10706620 Msa0007440:CDS 35.0%
TGAAAACGATGGATCCAATA+TGG + chr1_1:10706690-10706709 Msa0007440:CDS 35.0%
TGTTAGGATTGTTTGATGTG+TGG + chr1_1:10706743-10706762 Msa0007440:intron 35.0%
GTTAGGATTGTTTGATGTGT+GGG + chr1_1:10706744-10706763 Msa0007440:intron 35.0%
! ATTATTGGCATCAAGGTGTT+CGG - chr1_1:10706867-10706886 None:intergenic 35.0%
!! AGTGGTTAGTTTCATGTTAG+GGG + chr1_1:10707138-10707157 Msa0007440:intron 35.0%
GCAATTAGACATAGTTTCAG+GGG + chr1_1:10707299-10707318 Msa0007440:intron 35.0%
CAATTAGACATAGTTTCAGG+GGG + chr1_1:10707300-10707319 Msa0007440:intron 35.0%
TATGTTTAGATGGAGGGTTT+AGG + chr1_1:10707480-10707499 Msa0007440:intron 35.0%
ATGTTTAGATGGAGGGTTTA+GGG + chr1_1:10707481-10707500 Msa0007440:intron 35.0%
!! TGCTACAGAGTTTTAGTCTT+TGG + chr1_1:10707604-10707623 Msa0007440:intron 35.0%
!! GCTACAGAGTTTTAGTCTTT+GGG + chr1_1:10707605-10707624 Msa0007440:intron 35.0%
!! GGTTAGTTTCATATTAGAGG+CGG + chr1_1:10707640-10707659 Msa0007440:intron 35.0%
! TTTCCTTTCTAGCAGCAATT+TGG - chr1_1:10708140-10708159 None:intergenic 35.0%
TGCTAGAAAGGAAAAACAGA+TGG + chr1_1:10708146-10708165 Msa0007440:CDS 35.0%
AATACAGATGGGAATGATGA+AGG + chr1_1:10708216-10708235 Msa0007440:CDS 35.0%
ATACAGATGGGAATGATGAA+GGG + chr1_1:10708217-10708236 Msa0007440:CDS 35.0%
! GAAACCTGAACATTCCTTTT+TGG + chr1_1:10708290-10708309 Msa0007440:CDS 35.0%
ACTGAAATCTCTGTCCAAAA+AGG - chr1_1:10708307-10708326 None:intergenic 35.0%
! TTTTGGACAGAGATTTCAGT+CGG + chr1_1:10708307-10708326 Msa0007440:CDS 35.0%
TTTCAGTCGGAAGAAACAAT+TGG + chr1_1:10708320-10708339 Msa0007440:CDS 35.0%
TCATCCTTGTACTTTCTCTT+GGG - chr1_1:10708420-10708439 None:intergenic 35.0%
ATCATCCTTGTACTTTCTCT+TGG - chr1_1:10708421-10708440 None:intergenic 35.0%
ATCTGATTCAGATAGCAGTA+CGG + chr1_1:10708443-10708462 Msa0007440:CDS 35.0%
ATGATGAGAAAACAGGTAGA+AGG + chr1_1:10708466-10708485 Msa0007440:CDS 35.0%
ATCAGATTCATCACTACTGT+CGG - chr1_1:10708511-10708530 None:intergenic 35.0%
! ATTCTGATAGTGATGCTAAG+AGG + chr1_1:10708529-10708548 Msa0007440:CDS 35.0%
! TGATTTCTCTTCTGATAGTG+AGG + chr1_1:10708626-10708645 Msa0007440:CDS 35.0%
!! TTACTAGCCTTTACCTTTAC+TGG - chr1_1:10708684-10708703 None:intergenic 35.0%
TAAAGGTAAAGGCTAGTAAG+AGG + chr1_1:10708685-10708704 Msa0007440:CDS 35.0%
! CTGTCATTTATTTCCTCCTT+TGG - chr1_1:10709068-10709087 None:intergenic 35.0%
AAGGAGGAAATAAATGACAG+AGG + chr1_1:10709068-10709087 Msa0007440:CDS 35.0%
AAAAGGGAAAAATAGTGCCA+AGG + chr1_1:10709103-10709122 Msa0007440:CDS 35.0%
AAAAATAGTGCCAAGGTTGA+TGG + chr1_1:10709110-10709129 Msa0007440:CDS 35.0%
GTCAAATATGCTAAGCATGA+TGG + chr1_1:10709260-10709279 Msa0007440:CDS 35.0%
AATGAAACTTCTGATCAGAG+AGG + chr1_1:10709395-10709414 Msa0007440:CDS 35.0%
AGAGAGGCAGAAATTATAAC+AGG + chr1_1:10709411-10709430 Msa0007440:CDS 35.0%
GAGAGGCAGAAATTATAACA+GGG + chr1_1:10709412-10709431 Msa0007440:CDS 35.0%
GATGTTGAATCACAATCTGT+TGG + chr1_1:10709434-10709453 Msa0007440:CDS 35.0%
AATCTGTTGGACGAATTGAT+CGG + chr1_1:10709447-10709466 Msa0007440:CDS 35.0%
GGATTATGAAACAAGAAGGA+AGG + chr1_1:10709478-10709497 Msa0007440:CDS 35.0%
! CAAGAGATGGAAAGCATAAA+AGG + chr1_1:10709576-10709595 Msa0007440:CDS 35.0%
AAGGATGAAGATTATCCTAC+AGG + chr1_1:10709668-10709687 Msa0007440:CDS 35.0%
AAGAAAGATCAGAAGGATTG+AGG + chr1_1:10709727-10709746 Msa0007440:CDS 35.0%
AAGAAAGAACTTAAGGGATG+AGG + chr1_1:10709799-10709818 Msa0007440:CDS 35.0%
AGAAAGAACTTAAGGGATGA+GGG + chr1_1:10709800-10709819 Msa0007440:CDS 35.0%
TAGAGAAAGAAAGAACTCTC+TGG + chr1_1:10709829-10709848 Msa0007440:CDS 35.0%
!! AGAAAAGAAGCTCTAGAGAT+GGG + chr1_1:10709870-10709889 Msa0007440:CDS 35.0%
ATGGGGATGATTATGAAGAA+AGG + chr1_1:10709888-10709907 Msa0007440:CDS 35.0%
ATGGAGAAAGAAAGAGCTTA+AGG + chr1_1:10709972-10709991 Msa0007440:CDS 35.0%
TGGAGAAAGAAAGAGCTTAA+GGG + chr1_1:10709973-10709992 Msa0007440:CDS 35.0%
!! TTGGAGAAAGAAAGCACTTA+AGG + chr1_1:10710149-10710168 Msa0007440:CDS 35.0%
!! TGGAGAAAGAAAGCACTTAA+GGG + chr1_1:10710150-10710169 Msa0007440:CDS 35.0%
! ATAGAGAAGCACAAAACAGA+AGG + chr1_1:10710185-10710204 Msa0007440:CDS 35.0%
! TAGAGAAGCACAAAACAGAA+GGG + chr1_1:10710186-10710205 Msa0007440:CDS 35.0%
CAAAGAAAGGAAGAACTCAA+GGG + chr1_1:10710258-10710277 Msa0007440:CDS 35.0%
GCAAAGAAAGAAAGAACTCA+AGG + chr1_1:10710293-10710312 Msa0007440:CDS 35.0%
! GATGATGATGATGATGATGA+TGG + chr1_1:10710424-10710443 Msa0007440:CDS 35.0%
!! GAGAAAGAAGGCATTATAGA+AGG + chr1_1:10710458-10710477 Msa0007440:CDS 35.0%
GGAAAATAAAGGCTGTAAGA+GGG + chr1_1:10710528-10710547 Msa0007440:three_prime_UTR 35.0%
AGCATGAAAACCAAATACTG+TGG + chr1_1:10710608-10710627 Msa0007440:three_prime_UTR 35.0%
!! ATTTCAAGTTGAGTTCCAAC+TGG + chr1_1:10710731-10710750 Msa0007440:three_prime_UTR 35.0%
! TTCCAACTGGTCAATTTTGT+TGG + chr1_1:10710744-10710763 Msa0007440:three_prime_UTR 35.0%
! AGTGTTGAATGTTCCAAGAT+TGG + chr1_1:10710788-10710807 Msa0007440:three_prime_UTR 35.0%
CTGTCATTCATGAAAATAGC+AGG - chr1_1:10710824-10710843 None:intergenic 35.0%
TGAAGCAGTGATTCTGATAG+CGG - chr1_1:10706073-10706092 None:intergenic 40.0%
GTCGCGAACAATATGTACAA+CGG + chr1_1:10706370-10706389 Msa0007440:exon 40.0%
! GTTGCTTTGAATGTACCCAT+TGG - chr1_1:10706428-10706447 None:intergenic 40.0%
! TACTGCTGGTGTTAGTAGAA+AGG + chr1_1:10706516-10706535 Msa0007440:CDS 40.0%
GATTGATCAGGGTTATACTG+AGG + chr1_1:10706612-10706631 Msa0007440:CDS 40.0%
TTATACTGAGGCTGAGATTG+CGG + chr1_1:10706624-10706643 Msa0007440:CDS 40.0%
CGATGCTCTCTATGAATTGT+TGG + chr1_1:10706810-10706829 Msa0007440:intron 40.0%
CGATGCTCTCTATGTATTGT+TGG + chr1_1:10706941-10706960 Msa0007440:intron 40.0%
! TCACTTTCGATGAGAAGTGT+GGG + chr1_1:10707082-10707101 Msa0007440:intron 40.0%
GTCTGTGGGTTTGAATTAAG+TGG + chr1_1:10707120-10707139 Msa0007440:intron 40.0%
AGTTTCAGGGGGTAATGTTA+AGG + chr1_1:10707311-10707330 Msa0007440:intron 40.0%
GTTTCAGGGGGTAATGTTAA+GGG + chr1_1:10707312-10707331 Msa0007440:intron 40.0%
AACTCTACGTAGTTTCCTGA+GGG + chr1_1:10707457-10707476 Msa0007440:intron 40.0%
! TTCCTGAGGGTATGTTTAGA+TGG + chr1_1:10707470-10707489 Msa0007440:intron 40.0%
! TGAGGGTATGTTTAGATGGA+GGG + chr1_1:10707474-10707493 Msa0007440:intron 40.0%
! GTCTTTGGGTTTGAACTAAG+TGG + chr1_1:10707619-10707638 Msa0007440:intron 40.0%
TCACCAAATTGCTGCTAGAA+AGG + chr1_1:10708134-10708153 Msa0007440:CDS 40.0%
GAAACATTGAAAGCTGCTCT+TGG + chr1_1:10708168-10708187 Msa0007440:CDS 40.0%
TACAGATGGGAATGATGAAG+GGG + chr1_1:10708218-10708237 Msa0007440:CDS 40.0%
CTGTCCAAAAAGGAATGTTC+AGG - chr1_1:10708297-10708316 None:intergenic 40.0%
! AACTCCCAAGAGAAAGTACA+AGG + chr1_1:10708413-10708432 Msa0007440:CDS 40.0%
AGTACGGATGATGAGAAAAC+AGG + chr1_1:10708459-10708478 Msa0007440:CDS 40.0%
! TGATAGTGATGCTAAGAGGA+AGG + chr1_1:10708533-10708552 Msa0007440:CDS 40.0%
! AGTAAGAGGCATGATTCAGA+TGG + chr1_1:10708699-10708718 Msa0007440:CDS 40.0%
GGAGATTCTGATCATCATGA+AGG + chr1_1:10708720-10708739 Msa0007440:CDS 40.0%
GATAGTGAGGAAGAGAAACA+TGG + chr1_1:10708825-10708844 Msa0007440:CDS 40.0%
GACTTGAGAAGCAGAAAACA+AGG + chr1_1:10708850-10708869 Msa0007440:CDS 40.0%
TTGAGAAGCAGAAAACAAGG+AGG + chr1_1:10708853-10708872 Msa0007440:CDS 40.0%
AAGCAGAAAACAAGGAGGTA+TGG + chr1_1:10708858-10708877 Msa0007440:CDS 40.0%
! GAGGTATGGTTCTATTGATG+CGG + chr1_1:10708872-10708891 Msa0007440:CDS 40.0%
! AGTAGCAGTGATAGTGAAAC+TGG + chr1_1:10708975-10708994 Msa0007440:CDS 40.0%
AGAATCCAATCCATCAACCT+TGG - chr1_1:10709123-10709142 None:intergenic 40.0%
!! CTAAGCATGATGGACAAGAT+AGG + chr1_1:10709270-10709289 Msa0007440:CDS 40.0%
GATGGACAAGATAGGAAGTT+TGG + chr1_1:10709278-10709297 Msa0007440:CDS 40.0%
TCTAAATCAGCTAGGATCAG+AGG + chr1_1:10709365-10709384 Msa0007440:CDS 40.0%
CTAAATCAGCTAGGATCAGA+GGG + chr1_1:10709366-10709385 Msa0007440:CDS 40.0%
TTGGACGAATTGATCGGAAT+AGG + chr1_1:10709453-10709472 Msa0007440:CDS 40.0%
TGGACGAATTGATCGGAATA+GGG + chr1_1:10709454-10709473 Msa0007440:CDS 40.0%
GGGAGGATTATGAAACAAGA+AGG + chr1_1:10709474-10709493 Msa0007440:CDS 40.0%
! AAAAGCGTAAGAGACGAAGA+TGG + chr1_1:10709623-10709642 Msa0007440:CDS 40.0%
!! TACAGGAAGAAAGCACTTGA+GGG + chr1_1:10709685-10709704 Msa0007440:CDS 40.0%
TTGAGGGATGAAGATGATCA+CGG + chr1_1:10709701-10709720 Msa0007440:CDS 40.0%
ACGGAGAAAGAAAGATCAGA+AGG + chr1_1:10709720-10709739 Msa0007440:CDS 40.0%
GAAAGAAAGAACTCTCTGGA+TGG + chr1_1:10709833-10709852 Msa0007440:CDS 40.0%
! TAGAGCTTCTTTTCTCTCCA+CGG - chr1_1:10709865-10709884 None:intergenic 40.0%
!! GAGAAAAGAAGCTCTAGAGA+TGG + chr1_1:10709869-10709888 Msa0007440:CDS 40.0%
!! GAAAAGAAGCTCTAGAGATG+GGG + chr1_1:10709871-10709890 Msa0007440:CDS 40.0%
GAAAGGAAGAACTTAAGGGA+TGG + chr1_1:10709905-10709924 Msa0007440:CDS 40.0%
AAGAACTTAAGGGATGGCAA+TGG + chr1_1:10709911-10709930 Msa0007440:CDS 40.0%
AAGAAAGAGCTTAAGGGATG+AGG + chr1_1:10709979-10709998 Msa0007440:CDS 40.0%
AGAAAGAGCTTAAGGGATGA+GGG + chr1_1:10709980-10709999 Msa0007440:CDS 40.0%
GAGGAGAAAGAAAGAACTCT+CGG + chr1_1:10710008-10710027 Msa0007440:CDS 40.0%
AGGAGAAAGAAAGAACTCTC+GGG + chr1_1:10710009-10710028 Msa0007440:CDS 40.0%
TACAGGAAGAAAGACCTTGA+GGG + chr1_1:10710114-10710133 Msa0007440:CDS 40.0%
AAAATCGTCTTCATCCCTCA+AGG - chr1_1:10710131-10710150 None:intergenic 40.0%
! TTGAGGGATGAAGACGATTT+TGG + chr1_1:10710130-10710149 Msa0007440:CDS 40.0%
!! AAGAAAGCACTTAAGGGATG+AGG + chr1_1:10710156-10710175 Msa0007440:CDS 40.0%
!! AGAAAGCACTTAAGGGATGA+GGG + chr1_1:10710157-10710176 Msa0007440:CDS 40.0%
AAGCACAAAACAGAAGGGAT+GGG + chr1_1:10710191-10710210 Msa0007440:CDS 40.0%
ATGAGGATGATCGCAAAGAA+AGG + chr1_1:10710245-10710264 Msa0007440:CDS 40.0%
GCAAAGAAAGGAAGAACTCA+AGG + chr1_1:10710257-10710276 Msa0007440:CDS 40.0%
!! GATGATGATGATGATGGTCA+TGG + chr1_1:10710436-10710455 Msa0007440:CDS 40.0%
ATGATGGTCATGGAGAAAGA+AGG + chr1_1:10710446-10710465 Msa0007440:CDS 40.0%
TATAGAAGGGATGATGATCG+TGG + chr1_1:10710472-10710491 Msa0007440:CDS 40.0%
TAGGAAGAGCGGGAAAATAA+AGG + chr1_1:10710517-10710536 Msa0007440:exon 40.0%
GGGAAAATAAAGGCTGTAAG+AGG + chr1_1:10710527-10710546 Msa0007440:three_prime_UTR 40.0%
TCTTACTGGACCACAGTATT+TGG - chr1_1:10710621-10710640 None:intergenic 40.0%
AAATACTGTGGTCCAGTAAG+AGG + chr1_1:10710620-10710639 Msa0007440:three_prime_UTR 40.0%
AATACTGTGGTCCAGTAAGA+GGG + chr1_1:10710621-10710640 Msa0007440:three_prime_UTR 40.0%
CACCAACAAAATTGACCAGT+TGG - chr1_1:10710749-10710768 None:intergenic 40.0%
TCAGCAACCTTCGAAGTTCT+CGG - chr1_1:10706466-10706485 None:intergenic 45.0%
TTCTTGAGCATGACCGAAAG+CGG + chr1_1:10706551-10706570 Msa0007440:CDS 45.0%
TGAAGAGGCGAGGAATAACT+TGG + chr1_1:10706654-10706673 Msa0007440:CDS 45.0%
CTCACTTTCGATGAGAAGTG+TGG + chr1_1:10707081-10707100 Msa0007440:intron 45.0%
!! GGTTAGTTTCATGTTAGGGG+CGG + chr1_1:10707141-10707160 Msa0007440:intron 45.0%
! TTTTTGTCAGAAGAGTCCCG+TGG - chr1_1:10707202-10707221 None:intergenic 45.0%
GGTTGCTGTGTGTGATTTAG+AGG + chr1_1:10707270-10707289 Msa0007440:intron 45.0%
GGTAATGTTAAGGGCCCATT+TGG + chr1_1:10707321-10707340 Msa0007440:intron 45.0%
CAACTCTACGTAGTTTCCTG+AGG + chr1_1:10707456-10707475 Msa0007440:intron 45.0%
CTCCATCTAAACATACCCTC+AGG - chr1_1:10707475-10707494 None:intergenic 45.0%
! CTGAGGGTATGTTTAGATGG+AGG + chr1_1:10707473-10707492 Msa0007440:intron 45.0%
TTTAGATGGAGGGTTTAGGG+CGG + chr1_1:10707484-10707503 Msa0007440:intron 45.0%
! TTTTTGTCAGAAGAGTCCCG+TGG - chr1_1:10707202-10707221 None:intergenic 45.0%
CAGTCGGAAGAAACAATTGG+AGG + chr1_1:10708323-10708342 Msa0007440:CDS 45.0%
TGATGCTAAGAGGAAGGTCA+AGG + chr1_1:10708539-10708558 Msa0007440:CDS 45.0%
! ACATCTAAGCACCGCAAGAA+AGG + chr1_1:10708579-10708598 Msa0007440:CDS 45.0%
! GTAGGACTAGTGAAGTGAAG+AGG + chr1_1:10708754-10708773 Msa0007440:CDS 45.0%
CAAACGTCATGATTCCGAAG+AGG + chr1_1:10708791-10708810 Msa0007440:CDS 45.0%
ATCAGCGTCAGATTCCTCTT+CGG - chr1_1:10708808-10708827 None:intergenic 45.0%
ATCACTGCTACTCTCATCAG+AGG - chr1_1:10708967-10708986 None:intergenic 45.0%
! AGTGATAGTGATCGCAGGTA+TGG + chr1_1:10709002-10709021 Msa0007440:CDS 45.0%
AATGACAGAGGTAATGCTGC+AGG + chr1_1:10709080-10709099 Msa0007440:CDS 45.0%
AGAGGTAATGCTGCAGGAAA+AGG + chr1_1:10709086-10709105 Msa0007440:CDS 45.0%
GAGGTAATGCTGCAGGAAAA+GGG + chr1_1:10709087-10709106 Msa0007440:CDS 45.0%
!! TAGTGCCAAGGTTGATGGAT+TGG + chr1_1:10709115-10709134 Msa0007440:CDS 45.0%
ACGAATTGATCGGAATAGGG+AGG + chr1_1:10709457-10709476 Msa0007440:CDS 45.0%
! TGGAAAGCATAAAAGGGACG+AGG + chr1_1:10709583-10709602 Msa0007440:CDS 45.0%
! CTCTTACGCTTTTCTTCTCC+CGG - chr1_1:10709616-10709635 None:intergenic 45.0%
CTCAAGTGCTTTCTTCCTGT+AGG - chr1_1:10709686-10709705 None:intergenic 45.0%
!! CTACAGGAAGAAAGCACTTG+AGG + chr1_1:10709684-10709703 Msa0007440:CDS 45.0%
ATAATCATCCCCATCCCTCA+AGG - chr1_1:10709774-10709793 None:intergenic 45.0%
TTGAGGGATGGGGATGATTA+TGG + chr1_1:10709773-10709792 Msa0007440:CDS 45.0%
AAGAACTTAAGGGATGAGGG+TGG + chr1_1:10709803-10709822 Msa0007440:CDS 45.0%
! TAGAGCTCCTTTTCTCTCCA+CGG - chr1_1:10709937-10709956 None:intergenic 45.0%
TGGAGAGAAAAGGAGCTCTA+GGG + chr1_1:10709937-10709956 Msa0007440:CDS 45.0%
!! AGAAAAGGAGCTCTAGGGAT+GGG + chr1_1:10709942-10709961 Msa0007440:CDS 45.0%
TCTAGGGATGGGGATGATTA+TGG + chr1_1:10709953-10709972 Msa0007440:CDS 45.0%
GAAAGAAAGAACTCTCGGGA+TGG + chr1_1:10710013-10710032 Msa0007440:CDS 45.0%
! AGAGAAGAACTCTAGGGATG+TGG + chr1_1:10710048-10710067 Msa0007440:CDS 45.0%
! GAGAAGAACTCTAGGGATGT+GGG + chr1_1:10710049-10710068 Msa0007440:CDS 45.0%
AGGATTGAGGATGATCGTAC+AGG + chr1_1:10710097-10710116 Msa0007440:CDS 45.0%
GTACAGGAAGAAAGACCTTG+AGG + chr1_1:10710113-10710132 Msa0007440:CDS 45.0%
GAAGCACAAAACAGAAGGGA+TGG + chr1_1:10710190-10710209 Msa0007440:CDS 45.0%
AGCACAAAACAGAAGGGATG+GGG + chr1_1:10710192-10710211 Msa0007440:CDS 45.0%
AAGGAAGAACTCAAGGGAAG+AGG + chr1_1:10710264-10710283 Msa0007440:CDS 45.0%
ACAGAGAGAGAAAGAGCTCA+AGG + chr1_1:10710329-10710348 Msa0007440:CDS 45.0%
CAGAGAGAGAAAGAGCTCAA+GGG + chr1_1:10710330-10710349 Msa0007440:CDS 45.0%
AGAGGGGATGATGAGTATCA+TGG + chr1_1:10710382-10710401 Msa0007440:CDS 45.0%
! ATGGAGAAAGAAAGCGCAGA+AGG + chr1_1:10710401-10710420 Msa0007440:CDS 45.0%
! TGGAGAAAGAAAGCGCAGAA+GGG + chr1_1:10710402-10710421 Msa0007440:CDS 45.0%
! TGGAGAAAGGAAGCACAGAA+GGG + chr1_1:10710492-10710511 Msa0007440:CDS 45.0%
! ATACCGACTATCCCTCTTAC+TGG - chr1_1:10710635-10710654 None:intergenic 45.0%
!!! TAATTTTCTTAAAATATTAT+TGG - chr1_1:10706882-10706901 None:intergenic 5.0%
!!! TAATTTTCTTAAATTATTAT+TGG - chr1_1:10707019-10707038 None:intergenic 5.0%
ATCGGGTTACAAACCCCAAG+AGG + chr1_1:10706394-10706413 Msa0007440:CDS 50.0%
TCGGGTTACAAACCCCAAGA+GGG + chr1_1:10706395-10706414 Msa0007440:CDS 50.0%
TTACAAACCCCAAGAGGGTC+TGG + chr1_1:10706400-10706419 Msa0007440:CDS 50.0%
ATTGGTACCAGACCCTCTTG+GGG - chr1_1:10706410-10706429 None:intergenic 50.0%
CATTGGTACCAGACCCTCTT+GGG - chr1_1:10706411-10706430 None:intergenic 50.0%
CAAGAGGGTCTGGTACCAAT+GGG + chr1_1:10706410-10706429 Msa0007440:CDS 50.0%
AAGGGGTTTGAGGGAGATCA+AGG + chr1_1:10706493-10706512 Msa0007440:CDS 50.0%
!! TCAGCTGAATCTGCCGCTTT+CGG - chr1_1:10706567-10706586 None:intergenic 50.0%
GATTGCGGAGAAGCTTGAAG+AGG + chr1_1:10706639-10706658 Msa0007440:CDS 50.0%
AGAGGCGAGGAATAACTTGG+AGG + chr1_1:10706657-10706676 Msa0007440:CDS 50.0%
GCTGCAGCTGATGAAAACGA+TGG + chr1_1:10706679-10706698 Msa0007440:CDS 50.0%
! TTCGATGAGAAGTGTGGGTG+CGG + chr1_1:10707087-10707106 Msa0007440:intron 50.0%
! TGCGGCAGAGTTTTTGTCTG+TGG + chr1_1:10707105-10707124 Msa0007440:intron 50.0%
! GCGGCAGAGTTTTTGTCTGT+GGG + chr1_1:10707106-10707125 Msa0007440:intron 50.0%
GCTGTGTGTGATTTAGAGGC+TGG + chr1_1:10707274-10707293 Msa0007440:intron 50.0%
! TTAGATGGAGGGTTTAGGGC+GGG + chr1_1:10707485-10707504 Msa0007440:intron 50.0%
TGTGTCCGTGTTGTGTACAC+AGG + chr1_1:10707556-10707575 Msa0007440:intron 50.0%
CGAGTCCTGTGTACACAACA+CGG - chr1_1:10707564-10707583 None:intergenic 50.0%
! TCGCCTTCGATGAGAAGTGT+GGG + chr1_1:10707581-10707600 Msa0007440:intron 50.0%
ATGAAGGGGCTGGAAACGAA+GGG + chr1_1:10708232-10708251 Msa0007440:CDS 50.0%
! AGACACAAAGCGCCACAAGA+AGG + chr1_1:10708386-10708405 Msa0007440:CDS 50.0%
! GACACAAAGCGCCACAAGAA+GGG + chr1_1:10708387-10708406 Msa0007440:CDS 50.0%
! TAAGCACCGCAAGAAAGGCA+GGG + chr1_1:10708584-10708603 Msa0007440:CDS 50.0%
ACTTCACTAGTCCTACGCCT+GGG - chr1_1:10708750-10708769 None:intergenic 50.0%
! GGAATCTGACGCTGATAGTG+AGG + chr1_1:10708812-10708831 Msa0007440:CDS 50.0%
GGTTCTATTGATGCGGACTC+TGG + chr1_1:10708879-10708898 Msa0007440:CDS 50.0%
ATTGATGCGGACTCTGGTAG+AGG + chr1_1:10708885-10708904 Msa0007440:CDS 50.0%
ACTCTGGTAGAGGCAGTGTT+AGG + chr1_1:10708895-10708914 Msa0007440:CDS 50.0%
AGCGAAGAGAAGTGAGCCAA+AGG + chr1_1:10709049-10709068 Msa0007440:CDS 50.0%
GAAGAGAAGTGAGCCAAAGG+AGG + chr1_1:10709052-10709071 Msa0007440:CDS 50.0%
! TTACGCTTTTCTTCTCCCGG+CGG - chr1_1:10709613-10709632 None:intergenic 50.0%
GTAAGAGACGAAGATGGTCG+TGG + chr1_1:10709629-10709648 Msa0007440:CDS 50.0%
AAGATGGTCGTGGAGAGAGA+AGG + chr1_1:10709639-10709658 Msa0007440:CDS 50.0%
! TGGAGAGAGAAGGCATGGAA+AGG + chr1_1:10709649-10709668 Msa0007440:CDS 50.0%
AGGATTGAGGATGAACGTGC+AGG + chr1_1:10709740-10709759 Msa0007440:CDS 50.0%
TTGAGGATGAACGTGCAGGA+AGG + chr1_1:10709744-10709763 Msa0007440:CDS 50.0%
TGCAGGAAGGAAGACCTTGA+GGG + chr1_1:10709757-10709776 Msa0007440:CDS 50.0%
GAAGGAAGACCTTGAGGGAT+GGG + chr1_1:10709762-10709781 Msa0007440:CDS 50.0%
AAGGAAGACCTTGAGGGATG+GGG + chr1_1:10709763-10709782 Msa0007440:CDS 50.0%
GTGGAGAGAAAAGGAGCTCT+AGG + chr1_1:10709936-10709955 Msa0007440:CDS 50.0%
!! GAGAAAAGGAGCTCTAGGGA+TGG + chr1_1:10709941-10709960 Msa0007440:CDS 50.0%
!! GAAAAGGAGCTCTAGGGATG+GGG + chr1_1:10709943-10709962 Msa0007440:CDS 50.0%
AAGAGCTTAAGGGATGAGGG+TGG + chr1_1:10709983-10710002 Msa0007440:CDS 50.0%
AAGAACTCTCGGGATGGTGA+TGG + chr1_1:10710019-10710038 Msa0007440:CDS 50.0%
CCCTAGAGTTCTTCTCTCCT+CGG - chr1_1:10710045-10710064 None:intergenic 50.0%
CCGAGGAGAGAAGAACTCTA+GGG + chr1_1:10710042-10710061 Msa0007440:CDS 50.0%
CAAAACAGAAGGGATGGGGA+TGG + chr1_1:10710196-10710215 Msa0007440:CDS 50.0%
GAGAAAGAGCTCAAGGGATG+AGG + chr1_1:10710336-10710355 Msa0007440:CDS 50.0%
TCAAGGGATGAGGATGTTCG+TGG + chr1_1:10710346-10710365 Msa0007440:CDS 50.0%
CAAGGGATGAGGATGTTCGT+GGG + chr1_1:10710347-10710366 Msa0007440:CDS 50.0%
AAGGGATGAGGATGTTCGTG+GGG + chr1_1:10710348-10710367 Msa0007440:CDS 50.0%
! GTGGGGAAAGAAAGCACAGA+GGG + chr1_1:10710365-10710384 Msa0007440:CDS 50.0%
! TGGGGAAAGAAAGCACAGAG+GGG + chr1_1:10710366-10710385 Msa0007440:CDS 50.0%
GGGATGATGATCGTGGAGAA+AGG + chr1_1:10710479-10710498 Msa0007440:CDS 50.0%
! GTGGAGAAAGGAAGCACAGA+AGG + chr1_1:10710491-10710510 Msa0007440:CDS 50.0%
! AAGGAAGCACAGAAGGGAGT+AGG + chr1_1:10710498-10710517 Msa0007440:CDS 50.0%
ACAGAAGGGAGTAGGAAGAG+CGG + chr1_1:10710506-10710525 Msa0007440:exon 50.0%
GGTCCAGTAAGAGGGATAGT+CGG + chr1_1:10710629-10710648 Msa0007440:three_prime_UTR 50.0%
CCATTGGTACCAGACCCTCT+TGG - chr1_1:10706412-10706431 None:intergenic 55.0%
CCAAGAGGGTCTGGTACCAA+TGG + chr1_1:10706409-10706428 Msa0007440:CDS 55.0%
CGTGAAGCCGAGAACTTCGA+AGG + chr1_1:10706456-10706475 Msa0007440:CDS 55.0%
!! GAGGGAGATCAAGGTACTGC+TGG + chr1_1:10706502-10706521 Msa0007440:CDS 55.0%
CTCGCCTTCGATGAGAAGTG+TGG + chr1_1:10707580-10707599 Msa0007440:intron 55.0%
GCACCCACACTTCTCATCGA+AGG - chr1_1:10707088-10707107 None:intergenic 55.0%
GATGGGAATGATGAAGGGGC+TGG + chr1_1:10708222-10708241 Msa0007440:CDS 55.0%
GATGAAGGGGCTGGAAACGA+AGG + chr1_1:10708231-10708250 Msa0007440:CDS 55.0%
! ACAAAGCGCCACAAGAAGGG+TGG + chr1_1:10708390-10708409 Msa0007440:CDS 55.0%
TGGGAGTTCCACCCTTCTTG+TGG - chr1_1:10708401-10708420 None:intergenic 55.0%
! CTAAGCACCGCAAGAAAGGC+AGG + chr1_1:10708583-10708602 Msa0007440:CDS 55.0%
CATCCACCCTGCCTTTCTTG+CGG - chr1_1:10708593-10708612 None:intergenic 55.0%
! ATCATCATGAAGGCGTGCCC+AGG + chr1_1:10708730-10708749 Msa0007440:CDS 55.0%
CACTTCACTAGTCCTACGCC+TGG - chr1_1:10708751-10708770 None:intergenic 55.0%
GGCAGTGTTAGGCATGCTTC+AGG + chr1_1:10708906-10708925 Msa0007440:CDS 55.0%
! GCAGCAGTGATAGTGATCGC+AGG + chr1_1:10708997-10709016 Msa0007440:CDS 55.0%
GTGCAGGAAGGAAGACCTTG+AGG + chr1_1:10709756-10709775 Msa0007440:CDS 55.0%
GGAAGGAAGACCTTGAGGGA+TGG + chr1_1:10709761-10709780 Msa0007440:CDS 55.0%
TTAAGGGATGGCAATGGCCG+TGG + chr1_1:10709917-10709936 Msa0007440:CDS 55.0%
GCAATGGCCGTGGAGAGAAA+AGG + chr1_1:10709927-10709946 Msa0007440:CDS 55.0%
TTAAGGGATGAGGGTGGCAG+AGG + chr1_1:10709809-10709828 Msa0007440:CDS 55.0%
GCCGAGGAGAGAAGAACTCT+AGG + chr1_1:10710041-10710060 Msa0007440:CDS 55.0%
! CGTGGGGAAAGAAAGCACAG+AGG + chr1_1:10710364-10710383 Msa0007440:CDS 55.0%
CAGAAGGGAGTAGGAAGAGC+GGG + chr1_1:10710507-10710526 Msa0007440:exon 55.0%
CGGAGAAGCTTGAAGAGGCG+AGG + chr1_1:10706644-10706663 Msa0007440:CDS 60.0%
! ATGGAGGGTTTAGGGCGGGA+TGG + chr1_1:10707489-10707508 Msa0007440:intron 60.0%
AAAGGGACGAGGAAGACCGC+CGG + chr1_1:10709594-10709613 Msa0007440:CDS 60.0%
GGTCGTGGAGAGAGAAGGCA+TGG + chr1_1:10709644-10709663 Msa0007440:CDS 60.0%
TCTCTGGATGGCGATGTCCG+TGG + chr1_1:10709845-10709864 Msa0007440:CDS 60.0%
GCACCGCAAGAAAGGCAGGG+TGG + chr1_1:10708587-10708606 Msa0007440:CDS 65.0%
! ATGAAGGCGTGCCCAGGCGT+AGG + chr1_1:10708736-10708755 Msa0007440:CDS 65.0%
AAGGGACGAGGAAGACCGCC+GGG + chr1_1:10709595-10709614 Msa0007440:CDS 65.0%
!! TCTCGGGATGGTGATGGCCG+AGG + chr1_1:10710025-10710044 Msa0007440:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10706019 10710865 10706019 ID=Msa0007440;Name=Msa0007440
chr1_1 mRNA 10706019 10710865 10706019 ID=Msa0007440-mRNA-1;Parent=Msa0007440;Name=Msa0007440-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170|1|1|1|0.5|0.33|3|346|912
chr1_1 exon 10706019 10706166 10706019 ID=Msa0007440-mRNA-1:exon:3894;Parent=Msa0007440-mRNA-1
chr1_1 exon 10706360 10706716 10706360 ID=Msa0007440-mRNA-1:exon:3895;Parent=Msa0007440-mRNA-1
chr1_1 exon 10708116 10710865 10708116 ID=Msa0007440-mRNA-1:exon:3896;Parent=Msa0007440-mRNA-1
chr1_1 five_prime_UTR 10706019 10706166 10706019 ID=Msa0007440-mRNA-1:five_prime_utr;Parent=Msa0007440-mRNA-1
chr1_1 five_prime_UTR 10706360 10706381 10706360 ID=Msa0007440-mRNA-1:five_prime_utr;Parent=Msa0007440-mRNA-1
chr1_1 CDS 10706382 10706716 10706382 ID=Msa0007440-mRNA-1:cds;Parent=Msa0007440-mRNA-1
chr1_1 CDS 10708116 10710519 10708116 ID=Msa0007440-mRNA-1:cds;Parent=Msa0007440-mRNA-1
chr1_1 three_prime_UTR 10710520 10710865 10710520 ID=Msa0007440-mRNA-1:three_prime_utr;Parent=Msa0007440-mRNA-1
Gene Sequence

>Msa0007440

ATGTACAACGGAATCGGGTTACAAACCCCAAGAGGGTCTGGTACCAATGGGTACATTCAAAGCAACAAATTCTTCGTGAAGCCGAGAACTTCGAAGGTTGCTGAAAATATGAAGGGGTTTGAGGGAGATCAAGGTACTGCTGGTGTTAGTAGAAAGGCTAATAAAGAGATTCTTGAGCATGACCGAAAGCGGCAGATTCAGCTGAAGCTTGTTATTCTTGAAGATAAGCTGATTGATCAGGGTTATACTGAGGCTGAGATTGCGGAGAAGCTTGAAGAGGCGAGGAATAACTTGGAGGCTGCAGCTGATGAAAACGATGGATCCAATATGGATAAGATTTCTGATACACAGAGTCACCAAATTGCTGCTAGAAAGGAAAAACAGATGGAAACATTGAAAGCTGCTCTTGGCATAATATCTGAAGCTGATGAATTAAATACAGATGGGAATGATGAAGGGGCTGGAAACGAAGGGAAAGATGTTTCTTTTGCTGATGCAAAACATATTTTGAAACCTGAACATTCCTTTTTGGACAGAGATTTCAGTCGGAAGAAACAATTGGAGGAAGTTCAAAAAGAAGAAACTGCTAAGAAAAAGAGTGTTAAAGACACAAAGCGCCACAAGAAGGGTGGAACTCCCAAGAGAAAGTACAAGGATGATTCATCTGATTCAGATAGCAGTACGGATGATGAGAAAACAGGTAGAAGGAAGAACAGTAGAGTGAGTACCGACAGTAGTGATGAATCTGATTCTGATAGTGATGCTAAGAGGAAGGTCAAGGCTAAAAAGAAACAGAGCACATCTAAGCACCGCAAGAAAGGCAGGGTGGATGACAGTGATGATACTGATTTCTCTTCTGATAGTGAGGATAGCAAGAGTGCAAGAAAAAGTAATAAAAAACCAGTAAAGGTAAAGGCTAGTAAGAGGCATGATTCAGATGGAGATTCTGATCATCATGAAGGCGTGCCCAGGCGTAGGACTAGTGAAGTGAAGAGGCATGCAAAGACGAGCAAACGTCATGATTCCGAAGAGGAATCTGACGCTGATAGTGAGGAAGAGAAACATGGTAGACTTGAGAAGCAGAAAACAAGGAGGTATGGTTCTATTGATGCGGACTCTGGTAGAGGCAGTGTTAGGCATGCTTCAGGACAAGACAAACATGTTAAAAGGCGGACATACTCTTCCTCTGATGAGAGTAGCAGTGATAGTGAAACTGGCAGCAGTGATAGTGATCGCAGGTATGGAAGAACTAGAAAAGTTGGGTCTGTAGCGAAGAGAAGTGAGCCAAAGGAGGAAATAAATGACAGAGGTAATGCTGCAGGAAAAGGGAAAAATAGTGCCAAGGTTGATGGATTGGATTCTTTAAGAAAATCATATGGGAGAGATTATAAAGAGGGTCCAGATTCTAGAAGTCAAACAATAGCTAAGGGTGAAAAGAAAATTGATGAAGATAGAGATAGAGATAGAGATAGGGAGACTGTCAAATATGCTAAGCATGATGGACAAGATAGGAAGTTTGGTAAAACAGAGTCTGAGTCAAGATCTCGAATTTATCAAAATGAAAATGAAGAAAGAGATGGTTATTCTAAATCAGCTAGGATCAGAGGGAATGATAATGAAACTTCTGATCAGAGAGGCAGAAATTATAACAGGGATGTTGAATCACAATCTGTTGGACGAATTGATCGGAATAGGGAGGATTATGAAACAAGAAGGAAGGGAAGAAATGATAATGATTATAAAAGGGATCAGGATGACCATGATGAAAAAAAACATGGAAGGAATGAAGATGATTCAAGAGATGGAAAGCATAAAAGGGACGAGGAAGACCGCCGGGAGAAGAAAAGCGTAAGAGACGAAGATGGTCGTGGAGAGAGAAGGCATGGAAAGGATGAAGATTATCCTACAGGAAGAAAGCACTTGAGGGATGAAGATGATCACGGAGAAAGAAAGATCAGAAGGATTGAGGATGAACGTGCAGGAAGGAAGACCTTGAGGGATGGGGATGATTATGGAGAAAGAAAGAACTTAAGGGATGAGGGTGGCAGTAGAGAAAGAAAGAACTCTCTGGATGGCGATGTCCGTGGAGAGAAAAGAAGCTCTAGAGATGGGGATGATTATGAAGAAAGGAAGAACTTAAGGGATGGCAATGGCCGTGGAGAGAAAAGGAGCTCTAGGGATGGGGATGATTATGGAGAAAGAAAGAGCTTAAGGGATGAGGGTGGCAGAGGAGAAAGAAAGAACTCTCGGGATGGTGATGGCCGAGGAGAGAAGAACTCTAGGGATGTGGGTGATCTTAGAGAAACAAAGATTAGAAGGATTGAGGATGATCGTACAGGAAGAAAGACCTTGAGGGATGAAGACGATTTTGGAGAAAGAAAGCACTTAAGGGATGAGGGTCGTCATAGAGAAGCACAAAACAGAAGGGATGGGGATGGCAGTGTAGAAATAAAGAACTCTAGGTATGAGGATGATCGCAAAGAAAGGAAGAACTCAAGGGAAGAGGATGACCGCAAAGAAAGAAAGAACTCAAGGGAAGATGATGATCACAGAGAGAGAAAGAGCTCAAGGGATGAGGATGTTCGTGGGGAAAGAAAGCACAGAGGGGATGATGAGTATCATGGAGAAAGAAAGCGCAGAAGGGATGATGATGATGATGATGATGATGATGGTCATGGAGAAAGAAGGCATTATAGAAGGGATGATGATCGTGGAGAAAGGAAGCACAGAAGGGAGTAG
Protein sequence

>Msa0007440

MYNGIGLQTPRGSGTNGYIQSNKFFVKPRTSKVAENMKGFEGDQGTAGVSRKANKEILEHDRKRQIQLKLVILEDKLIDQGYTEAEIAEKLEEARNNLEAAADENDGSNMDKISDTQSHQIAARKEKQMETLKAALGIISEADELNTDGNDEGAGNEGKDVSFADAKHILKPEHSFLDRDFSRKKQLEEVQKEETAKKKSVKDTKRHKKGGTPKRKYKDDSSDSDSSTDDEKTGRRKNSRVSTDSSDESDSDSDAKRKVKAKKKQSTSKHRKKGRVDDSDDTDFSSDSEDSKSARKSNKKPVKVKASKRHDSDGDSDHHEGVPRRRTSEVKRHAKTSKRHDSEEESDADSEEEKHGRLEKQKTRRYGSIDADSGRGSVRHASGQDKHVKRRTYSSSDESSSDSETGSSDSDRRYGRTRKVGSVAKRSEPKEEINDRGNAAGKGKNSAKVDGLDSLRKSYGRDYKEGPDSRSQTIAKGEKKIDEDRDRDRDRETVKYAKHDGQDRKFGKTESESRSRIYQNENEERDGYSKSARIRGNDNETSDQRGRNYNRDVESQSVGRIDRNREDYETRRKGRNDNDYKRDQDDHDEKKHGRNEDDSRDGKHKRDEEDRREKKSVRDEDGRGERRHGKDEDYPTGRKHLRDEDDHGERKIRRIEDERAGRKTLRDGDDYGERKNLRDEGGSRERKNSLDGDVRGEKRSSRDGDDYEERKNLRDGNGRGEKRSSRDGDDYGERKSLRDEGGRGERKNSRDGDGRGEKNSRDVGDLRETKIRRIEDDRTGRKTLRDEDDFGERKHLRDEGRHREAQNRRDGDGSVEIKNSRYEDDRKERKNSREEDDRKERKNSREDDDHRERKSSRDEDVRGERKHRGDDEYHGERKRRRDDDDDDDDDGHGERRHYRRDDDRGERKHRRE*