Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460420 | PNY16225.1 | 98.466 | 326 | 4 | 1 | 1 | 326 | 1 | 325 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460420 | sp|Q43317|CYSK_CITLA | 88.923 | 325 | 35 | 1 | 1 | 325 | 1 | 324 | 0.0 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460420 | A0A2K3PLS0 | 98.466 | 326 | 4 | 1 | 1 | 326 | 1 | 325 | 0.0 | 641 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042420 | Msa1460420 | 0.850522 | 1.608452e-60 | -8.615850e-47 |
| Msa0179270 | Msa1460420 | 0.840130 | 1.046753e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460420 | MtrunA17_Chr1g0191041 | 97.239 | 326 | 8 | 1 | 1 | 326 | 1 | 325 | 0.0 | 633 |
| Msa1460420 | MtrunA17_Chr5g0394491 | 87.692 | 325 | 39 | 1 | 1 | 325 | 1 | 324 | 0.0 | 527 |
| Msa1460420 | MtrunA17_Chr1g0205381 | 87.077 | 325 | 41 | 1 | 1 | 325 | 1 | 324 | 0.0 | 525 |
| Msa1460420 | MtrunA17_Chr1g0191051 | 74.923 | 323 | 80 | 1 | 3 | 325 | 2 | 323 | 5.13e-168 | 470 |
| Msa1460420 | MtrunA17_Chr4g0045721 | 69.470 | 321 | 97 | 1 | 2 | 322 | 41 | 360 | 4.61e-167 | 469 |
| Msa1460420 | MtrunA17_Chr4g0045781 | 72.785 | 316 | 85 | 1 | 7 | 322 | 65 | 379 | 7.31e-159 | 449 |
| Msa1460420 | MtrunA17_Chr4g0045771 | 65.421 | 321 | 101 | 3 | 2 | 322 | 41 | 351 | 3.66e-154 | 436 |
| Msa1460420 | MtrunA17_Chr1g0191061 | 64.444 | 360 | 81 | 3 | 12 | 325 | 25 | 383 | 4.12e-149 | 424 |
| Msa1460420 | MtrunA17_Chr7g0248021 | 63.407 | 317 | 115 | 1 | 6 | 322 | 59 | 374 | 2.04e-144 | 412 |
| Msa1460420 | MtrunA17_Chr7g0254401 | 62.696 | 319 | 108 | 2 | 4 | 322 | 61 | 368 | 1.46e-134 | 387 |
| Msa1460420 | MtrunA17_Chr1g0191071 | 69.145 | 269 | 78 | 1 | 57 | 325 | 1 | 264 | 5.79e-117 | 338 |
| Msa1460420 | MtrunA17_Chr5g0446431 | 29.379 | 354 | 190 | 7 | 12 | 308 | 48 | 398 | 2.11e-40 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460420 | AT4G14880.5 | 80.000 | 320 | 63 | 1 | 6 | 325 | 3 | 321 | 7.52e-179 | 498 |
| Msa1460420 | AT4G14880.3 | 80.000 | 320 | 63 | 1 | 6 | 325 | 3 | 321 | 7.52e-179 | 498 |
| Msa1460420 | AT4G14880.4 | 80.000 | 320 | 63 | 1 | 6 | 325 | 3 | 321 | 7.52e-179 | 498 |
| Msa1460420 | AT4G14880.2 | 80.000 | 320 | 63 | 1 | 6 | 325 | 3 | 321 | 7.52e-179 | 498 |
| Msa1460420 | AT4G14880.1 | 80.000 | 320 | 63 | 1 | 6 | 325 | 3 | 321 | 7.52e-179 | 498 |
| Msa1460420 | AT2G43750.1 | 74.684 | 316 | 79 | 1 | 7 | 322 | 74 | 388 | 1.18e-163 | 462 |
| Msa1460420 | AT2G43750.2 | 74.684 | 316 | 79 | 1 | 7 | 322 | 74 | 388 | 1.18e-163 | 462 |
| Msa1460420 | AT3G59760.1 | 73.981 | 319 | 82 | 1 | 4 | 322 | 109 | 426 | 3.65e-163 | 462 |
| Msa1460420 | AT3G59760.3 | 73.981 | 319 | 82 | 1 | 4 | 322 | 109 | 426 | 4.24e-163 | 462 |
| Msa1460420 | AT3G04940.1 | 70.807 | 322 | 93 | 1 | 1 | 322 | 1 | 321 | 3.67e-158 | 445 |
| Msa1460420 | AT3G04940.2 | 70.807 | 322 | 93 | 1 | 1 | 322 | 1 | 321 | 3.67e-158 | 445 |
| Msa1460420 | AT5G28020.2 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 7.58e-157 | 442 |
| Msa1460420 | AT5G28020.4 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 7.58e-157 | 442 |
| Msa1460420 | AT5G28020.1 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 7.58e-157 | 442 |
| Msa1460420 | AT5G28020.3 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 7.58e-157 | 442 |
| Msa1460420 | AT5G28020.6 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 7.58e-157 | 442 |
| Msa1460420 | AT3G59760.2 | 69.846 | 325 | 95 | 3 | 4 | 326 | 109 | 432 | 1.77e-148 | 425 |
| Msa1460420 | AT3G22460.1 | 77.695 | 269 | 40 | 1 | 57 | 325 | 1 | 249 | 5.48e-147 | 414 |
| Msa1460420 | AT5G28030.1 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.57e-146 | 416 |
| Msa1460420 | AT5G28030.4 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.57e-146 | 416 |
| Msa1460420 | AT5G28030.5 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.57e-146 | 416 |
| Msa1460420 | AT5G28030.2 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.57e-146 | 416 |
| Msa1460420 | AT3G61440.1 | 61.342 | 313 | 120 | 1 | 10 | 322 | 51 | 362 | 1.25e-134 | 387 |
| Msa1460420 | AT3G03630.1 | 63.208 | 318 | 106 | 2 | 7 | 324 | 98 | 404 | 2.70e-131 | 380 |
| Msa1460420 | AT3G61440.2 | 63.158 | 266 | 98 | 0 | 57 | 322 | 1 | 266 | 8.27e-118 | 341 |
| Msa1460420 | AT5G28030.3 | 68.000 | 250 | 79 | 1 | 3 | 252 | 2 | 250 | 4.81e-112 | 326 |
| Msa1460420 | AT3G22460.2 | 83.598 | 189 | 30 | 1 | 1 | 189 | 1 | 188 | 1.18e-111 | 322 |
| Msa1460420 | AT3G61440.4 | 59.696 | 263 | 105 | 1 | 10 | 272 | 51 | 312 | 2.65e-108 | 319 |
| Msa1460420 | AT5G28020.5 | 70.464 | 237 | 70 | 0 | 89 | 325 | 1 | 237 | 1.37e-105 | 308 |
| Msa1460420 | AT3G61440.3 | 62.500 | 240 | 90 | 0 | 83 | 322 | 2 | 241 | 2.99e-105 | 308 |
| Msa1460420 | AT1G55880.1 | 27.671 | 365 | 201 | 8 | 3 | 308 | 35 | 395 | 6.73e-36 | 134 |
| Msa1460420 | AT1G55880.2 | 29.084 | 251 | 133 | 5 | 3 | 211 | 35 | 282 | 3.68e-29 | 115 |
Find 98 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTTGATGCCCTTGTTTC+TGG | 0.150326 | tig0040892:-9008 | Msa1460420:CDS |
| TTGTCATAAGTTTGAAATAA+TGG | 0.200774 | tig0040892:-7079 | Msa1460420:three_prime_UTR |
| TAGAAAATTGCTAAATACTA+TGG | 0.267447 | tig0040892:-10646 | Msa1460420:exon |
| ATAATCCTAACCTTAATATC+AGG | 0.274666 | tig0040892:+8930 | Msa1460420:intergenic |
| TGGCTTCATTCCTGGTGTTC+TGG | 0.280161 | tig0040892:-8190 | Msa1460420:CDS |
| ACTAACACCTTTGGGTTTGC+AGG | 0.288673 | tig0040892:+9156 | Msa1460420:intergenic |
| TATTCAGATGCAGATGTAAA+TGG | 0.295214 | tig0040892:+7150 | Msa1460420:intergenic |
| ATTGGTGCTGGCTTCATTCC+TGG | 0.295467 | tig0040892:-8198 | Msa1460420:CDS |
| AGAACCATTCTTCGCGCTTT+TGG | 0.297151 | tig0040892:-9291 | Msa1460420:CDS |
| TGTCATAAGTTTGAAATAAT+GGG | 0.317444 | tig0040892:-7078 | Msa1460420:three_prime_UTR |
| GTTCGGTGTGATAGGTAGTT+TGG | 0.317527 | tig0040892:+10767 | Msa1460420:intergenic |
| TGCATTAAAAGAAGGTTTGC+TGG | 0.326558 | tig0040892:-7724 | Msa1460420:intron |
| AGAGCAAAACCCTGATATTA+AGG | 0.326681 | tig0040892:-8940 | Msa1460420:intron |
| GGCATTCATGGCAGCTGCTA+AGG | 0.329627 | tig0040892:-9361 | Msa1460420:CDS |
| TGATAGGTAGTTTGGGAATT+GGG | 0.337712 | tig0040892:+10775 | Msa1460420:intergenic |
| TGGTATTGGTTTGGCATTCA+TGG | 0.343061 | tig0040892:-9373 | Msa1460420:CDS |
| GATGCCCTTGTTTCTGGTAT+AGG | 0.346426 | tig0040892:-9002 | Msa1460420:CDS |
| CTCATGTTACAGTTTGTGTT+TGG | 0.354810 | tig0040892:-7190 | Msa1460420:three_prime_UTR |
| GTGATAGGTAGTTTGGGAAT+TGG | 0.379220 | tig0040892:+10774 | Msa1460420:intergenic |
| TTCAACACAACATTATTTGT+TGG | 0.392246 | tig0040892:-10878 | Msa1460420:five_prime_UTR |
| GCGTACGAGTTCGGTGTGAT+AGG | 0.401469 | tig0040892:+10759 | Msa1460420:intergenic |
| GGAACCGGAGGTACGGTAAC+AGG | 0.406043 | tig0040892:-8981 | Msa1460420:CDS |
| CTTGTTTCTGGTATAGGAAC+CGG | 0.413375 | tig0040892:-8996 | Msa1460420:CDS |
| TAGGTTCACTATGAAACTAC+TGG | 0.414969 | tig0040892:-9059 | Msa1460420:CDS |
| AAACTTCTTGCATTAAAAGA+AGG | 0.415012 | tig0040892:-7732 | Msa1460420:CDS |
| CCAATACCTTGGATCTTATG+AGG | 0.417262 | tig0040892:+8216 | Msa1460420:intergenic |
| GGTTTCCCTCCAGACAATAC+TGG | 0.417936 | tig0040892:+8765 | Msa1460420:intergenic |
| TTCGGTGTGATAGGTAGTTT+GGG | 0.421038 | tig0040892:+10768 | Msa1460420:intergenic |
| AAACTACTGGACCAGAGATC+TGG | 0.427472 | tig0040892:-9046 | Msa1460420:CDS |
| ATACTAATGGCGTACGAGTT+CGG | 0.434133 | tig0040892:+10750 | Msa1460420:intergenic |
| GCTCCTTTCATACCTTTAGC+TGG | 0.435185 | tig0040892:+9246 | Msa1460420:intergenic |
| TGCTGAAGAATGTAAGCATT+GGG | 0.439335 | tig0040892:+9189 | Msa1460420:intergenic |
| ACTAGTGGAAACACTGGTAT+TGG | 0.441486 | tig0040892:-9387 | Msa1460420:CDS |
| TGGAAACACTGGTATTGGTT+TGG | 0.446534 | tig0040892:-9382 | Msa1460420:CDS |
| TTCTCAAATTTGAAGTGGGA+TGG | 0.475311 | tig0040892:-7229 | Msa1460420:three_prime_UTR |
| GCAAAGAAGCCGGAAAATGC+TGG | 0.482832 | tig0040892:-7566 | Msa1460420:CDS |
| CTTGAAAGTCCAGTATTGTC+TGG | 0.488243 | tig0040892:-8774 | Msa1460420:CDS |
| CTCTCAAGACTCATTGAAGC+AGG | 0.492620 | tig0040892:+9315 | Msa1460420:intergenic |
| GGAGGTACGGTAACAGGTGC+TGG | 0.494965 | tig0040892:-8975 | Msa1460420:CDS |
| CCAGAGATCTGGAAAAGCTC+TGG | 0.501405 | tig0040892:-9035 | Msa1460420:CDS |
| TGCGGCAAAGCTAGAAATGA+TGG | 0.501879 | tig0040892:-10376 | Msa1460420:CDS |
| ATTGCAGATGCTGAGGAGAA+AGG | 0.503285 | tig0040892:-9703 | Msa1460420:CDS |
| CCTCATAAGATCCAAGGTAT+TGG | 0.505205 | tig0040892:-8216 | Msa1460420:CDS |
| GTATTGTCTGGAGGGAAACC+TGG | 0.505854 | tig0040892:-8762 | Msa1460420:intron |
| AGTTTCAATAGCTTCTTCGC+TGG | 0.508262 | tig0040892:+7758 | Msa1460420:intergenic |
| TTTCAGGTGGGGATATCATC+TGG | 0.511463 | tig0040892:-7617 | Msa1460420:intron |
| TTGCTGAAGAATGTAAGCAT+TGG | 0.512878 | tig0040892:+9188 | Msa1460420:intergenic |
| AGCACCTGTTACCGTACCTC+CGG | 0.515405 | tig0040892:+8977 | Msa1460420:intergenic |
| GCATTCATGGCAGCTGCTAA+GGG | 0.522984 | tig0040892:-9360 | Msa1460420:CDS |
| TTCCGTGACATCTTTAGCAA+TGG | 0.523401 | tig0040892:+10608 | Msa1460420:intergenic |
| CTCAACCATGTTGTGGTGGA+TGG | 0.528657 | tig0040892:-10414 | Msa1460420:CDS |
| AGATAACGCTCTCCAAAGCT+CGG | 0.532448 | tig0040892:+7354 | Msa1460420:intergenic |
| AAGATCCAAGGTATTGGTGC+TGG | 0.533186 | tig0040892:-8210 | Msa1460420:CDS |
| TAATCCTAACCTTAATATCA+GGG | 0.533978 | tig0040892:+8931 | Msa1460420:intergenic |
| CTTCTCACTGATCCAGCTAA+AGG | 0.534891 | tig0040892:-9258 | Msa1460420:CDS |
| TCTCAAATTTGAAGTGGGAT+GGG | 0.536307 | tig0040892:-7228 | Msa1460420:three_prime_UTR |
| TGAAGCCAGCACCAATACCT+TGG | 0.537270 | tig0040892:+8205 | Msa1460420:intergenic |
| GGCACCAAAAGCGCGAAGAA+TGG | 0.537288 | tig0040892:+9287 | Msa1460420:intergenic |
| TTGCTTCTCAAATTTGAAGT+GGG | 0.540219 | tig0040892:-7233 | Msa1460420:three_prime_UTR |
| GAGATCTGGAAAAGCTCTGG+TGG | 0.541486 | tig0040892:-9032 | Msa1460420:CDS |
| CGGTTCCTATACCAGAAACA+AGG | 0.542856 | tig0040892:+8997 | Msa1460420:intergenic |
| TTTGCTTCTCAAATTTGAAG+TGG | 0.549353 | tig0040892:-7234 | Msa1460420:three_prime_UTR |
| GATAACGCTCTCCAAAGCTC+GGG | 0.550231 | tig0040892:+7355 | Msa1460420:intergenic |
| ATACCAGTGTTTCCACTAGT+AGG | 0.551210 | tig0040892:+9390 | Msa1460420:intergenic |
| TGGTATAGGAACCGGAGGTA+CGG | 0.570019 | tig0040892:-8988 | Msa1460420:CDS |
| CTTGCTCTAGTGTCAAAGAC+AGG | 0.573863 | tig0040892:-10350 | Msa1460420:intron |
| AAAGTCCAGTATTGTCTGGA+GGG | 0.575979 | tig0040892:-8770 | Msa1460420:CDS |
| AATCTTAATTGCAGCTGCTG+CGG | 0.576543 | tig0040892:+7589 | Msa1460420:intergenic |
| GTCCTCATTGAGCCTACTAG+TGG | 0.580307 | tig0040892:-9402 | Msa1460420:CDS |
| GATCCAGCTAAAGGTATGAA+AGG | 0.584953 | tig0040892:-9249 | Msa1460420:CDS |
| AATTAAGATTGCAAAGAAGC+CGG | 0.588073 | tig0040892:-7576 | Msa1460420:CDS |
| GAAGGAAAACTAACTTCTTG+CGG | 0.588318 | tig0040892:+9670 | Msa1460420:intergenic |
| TGAAGTGGGATGGGAGCCAA+TGG | 0.591374 | tig0040892:-7219 | Msa1460420:three_prime_UTR |
| AACCATTGCTAAAGATGTCA+CGG | 0.593791 | tig0040892:-10610 | Msa1460420:CDS |
| GACAATACTGGACTTTCAAG+TGG | 0.596668 | tig0040892:+8777 | Msa1460420:intergenic |
| AAGACTCATTGAAGCAGGCA+TGG | 0.602785 | tig0040892:+9320 | Msa1460420:intergenic |
| CAAGGCCCTCATAAGATCCA+AGG | 0.604638 | tig0040892:-8222 | Msa1460420:intron |
| GTAACATGAGATGCTACCAT+TGG | 0.604856 | tig0040892:+7203 | Msa1460420:intergenic |
| CAATACCTTGGATCTTATGA+GGG | 0.606155 | tig0040892:+8217 | Msa1460420:intergenic |
| GGGAATTGGGACAGAGACAA+AGG | 0.606225 | tig0040892:+10788 | Msa1460420:intergenic |
| TAGCATGATTGCAGATGCTG+AGG | 0.608575 | tig0040892:-9710 | Msa1460420:CDS |
| CACAACCATCCACCACAACA+TGG | 0.608802 | tig0040892:+10409 | Msa1460420:intergenic |
| AAATCAACATCCAGAACACC+AGG | 0.609679 | tig0040892:+8180 | Msa1460420:intergenic |
| GAAAGTCCAGTATTGTCTGG+AGG | 0.625339 | tig0040892:-8771 | Msa1460420:CDS |
| GAGCCTACTAGTGGAAACAC+TGG | 0.626296 | tig0040892:-9393 | Msa1460420:CDS |
| AGTATATCTCAACCATGTTG+TGG | 0.626732 | tig0040892:-10421 | Msa1460420:CDS |
| AGATCTGGAAAAGCTCTGGT+GGG | 0.630978 | tig0040892:-9031 | Msa1460420:CDS |
| TGAAAATCCTGCAAACCCAA+AGG | 0.632579 | tig0040892:-9163 | Msa1460420:intron |
| TGGTTGTGTTGCACAAATTG+CGG | 0.632724 | tig0040892:-10394 | Msa1460420:CDS |
| AAAATTGCTAAATACTATGG+CGG | 0.639638 | tig0040892:-10643 | Msa1460420:exon |
| CTGTCTTTGACACTAGAGCA+AGG | 0.647667 | tig0040892:+10351 | Msa1460420:intergenic |
| TGGATCAGTGAGAAGTAACT+CGG | 0.655295 | tig0040892:+9266 | Msa1460420:intergenic |
| ATATCTCAACCATGTTGTGG+TGG | 0.664321 | tig0040892:-10418 | Msa1460420:CDS |
| GTTTCTGGTATAGGAACCGG+AGG | 0.680508 | tig0040892:-8993 | Msa1460420:CDS |
| TTCCACTAGTAGGCTCAATG+AGG | 0.683327 | tig0040892:+9400 | Msa1460410:intergenic |
| ACATGGTTGAGATATACTAG+TGG | 0.684632 | tig0040892:+10426 | Msa1460410:intergenic |
| GGGACAGAGACAAAGGACAA+AGG | 0.690625 | tig0040892:+10795 | Msa1460410:intergenic |
| GGTTCCTATACCAGAAACAA+GGG | 0.692573 | tig0040892:+8998 | Msa1460410:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTT+GGG | - | tig0040892:8060-8079 | Msa1460420:intron | 0.0% |
| !!! | TCACTTTTTTTTTTTTTTTT+TGG | - | tig0040892:7396-7415 | Msa1460420:intron | 10.0% |
| !! | GTTGATTATATAAACATATA+TGG | + | tig0040892:7375-7394 | Msa1460420:intergenic | 15.0% |
| !!! | TTTCTGAGATTTTTTAAAAT+TGG | - | tig0040892:7630-7649 | Msa1460420:intron | 15.0% |
| !!! | TATCATTTTATCTTTTTGTT+GGG | - | tig0040892:7784-7803 | Msa1460420:intron | 15.0% |
| !!! | AAATTTTAAATCGTTTACTT+AGG | - | tig0040892:8435-8454 | Msa1460420:intron | 15.0% |
| !!! | TAATAAAACTTTTTTCTTGT+TGG | + | tig0040892:9586-9605 | Msa1460420:intergenic | 15.0% |
| !! | ACTTAAACTTTATTATTGAA+GGG | + | tig0040892:9896-9915 | Msa1460420:intergenic | 15.0% |
| !! | TACTTAAACTTTATTATTGA+AGG | + | tig0040892:9897-9916 | Msa1460420:intergenic | 15.0% |
| !! | TAATAGAATATACAAACATT+CGG | + | tig0040892:10110-10129 | Msa1460420:intergenic | 15.0% |
| !! | AGCAAAAAATTAATTTCAAA+TGG | + | tig0040892:10701-10720 | Msa1460420:intergenic | 15.0% |
| !! | GATAAGAAATTAAATTGAAG+AGG | + | tig0040892:7263-7282 | Msa1460420:intergenic | 20.0% |
| !! | TAGAAAATTGCTAAATACTA+TGG | - | tig0040892:7303-7322 | Msa1460420:CDS | 20.0% |
| !! | CACTTTATATAATGATTCTA+AGG | + | tig0040892:7702-7721 | Msa1460420:intergenic | 20.0% |
| !!! | AATGATAGAAAGATTGATTT+TGG | + | tig0040892:7771-7790 | Msa1460420:intergenic | 20.0% |
| !!! | CTATCATTTTATCTTTTTGT+TGG | - | tig0040892:7783-7802 | Msa1460420:intron | 20.0% |
| !!! | ATAATGAGATTGATTTCAAT+TGG | - | tig0040892:7897-7916 | Msa1460420:intron | 20.0% |
| !! | ATAGCAACTAAAAAACATTA+AGG | + | tig0040892:8188-8207 | Msa1460420:intergenic | 20.0% |
| !! | TCATGAATTAAATATCAAGA+AGG | + | tig0040892:8300-8319 | Msa1460420:intergenic | 20.0% |
| !!! | ATCTCTTATTTGATAATCAA+TGG | + | tig0040892:8483-8502 | Msa1460420:intergenic | 20.0% |
| !! | ATTACCTTCTATAAATTTCT+AGG | - | tig0040892:9061-9080 | Msa1460420:intron | 20.0% |
| !!! | ATTTTTTTTCCTTAGCTATA+TGG | - | tig0040892:9142-9161 | Msa1460420:intron | 20.0% |
| !! | AATAGAAATAAAGGATAAGA+AGG | + | tig0040892:9221-9240 | Msa1460420:intergenic | 20.0% |
| !!! | TTAACTTGCAATAGAAATAA+AGG | + | tig0040892:9230-9249 | Msa1460420:intergenic | 20.0% |
| !!! | ATTTTTCTTGGAAATCAAAA+CGG | - | tig0040892:9519-9538 | Msa1460420:intron | 20.0% |
| !! | ATATTCATAAGTTAACCAAA+AGG | + | tig0040892:9936-9955 | Msa1460420:intergenic | 20.0% |
| !!! | TTGTCATAAGTTTGAAATAA+TGG | - | tig0040892:10870-10889 | Msa1460420:five_prime_UTR | 20.0% |
| !!! | TGTCATAAGTTTGAAATAAT+GGG | - | tig0040892:10871-10890 | Msa1460420:five_prime_UTR | 20.0% |
| ! | TTCAACACAACATTATTTGT+TGG | - | tig0040892:7071-7090 | Msa1460420:three_prime_UTR | 25.0% |
| ! | CGTAAATATGGTAATACTAA+TGG | + | tig0040892:7215-7234 | Msa1460420:intergenic | 25.0% |
| ! | AAAATTGCTAAATACTATGG+CGG | - | tig0040892:7306-7325 | Msa1460420:CDS | 25.0% |
| !!! | TTTTGAAATGTACAGTTGAT+TGG | - | tig0040892:7493-7512 | Msa1460420:intron | 25.0% |
| !! | TGATTTCAATTGGTTTAAGT+TGG | - | tig0040892:7907-7926 | Msa1460420:intron | 25.0% |
| ! | GATTATGAGATCATTACAAT+AGG | - | tig0040892:7935-7954 | Msa1460420:intron | 25.0% |
| !! | CATCATGGAACATATAATTT+TGG | - | tig0040892:7958-7977 | Msa1460420:intron | 25.0% |
| ! | TATGAAACAGAATTAAGTCA+TGG | + | tig0040892:8007-8026 | Msa1460420:intergenic | 25.0% |
| !! | AACATTCAGAATAGATCTTT+TGG | + | tig0040892:8032-8051 | Msa1460420:intergenic | 25.0% |
| ! | ATAATTCTTTCATTTGATGC+AGG | - | tig0040892:8208-8227 | Msa1460420:CDS | 25.0% |
| ! | TGAATGACTTATTCTTAATG+CGG | + | tig0040892:8387-8406 | Msa1460420:intergenic | 25.0% |
| ! | TTTAAATCGTTTACTTAGGT+TGG | - | tig0040892:8439-8458 | Msa1460420:intron | 25.0% |
| ! | AATAAGAGATGAAATTCACA+AGG | - | tig0040892:8493-8512 | Msa1460420:intron | 25.0% |
| !!! | GTTATTTTTAGAGAATCACT+TGG | - | tig0040892:8827-8846 | Msa1460420:intron | 25.0% |
| ! | TAATCCTAACCTTAATATCA+GGG | + | tig0040892:9021-9040 | Msa1460420:intergenic | 25.0% |
| ! | ATAATCCTAACCTTAATATC+AGG | + | tig0040892:9022-9041 | Msa1460420:intergenic | 25.0% |
| !!! | GTTTTGATTTCCAAGAAAAA+TGG | + | tig0040892:9520-9539 | Msa1460420:intergenic | 25.0% |
| !!! | ACATTGCTTTGTTATTTGAA+TGG | - | tig0040892:9628-9647 | Msa1460420:intron | 25.0% |
| ! | AAACTTCTTGCATTAAAAGA+AGG | - | tig0040892:10217-10236 | Msa1460420:intron | 25.0% |
| ! | AATAGCATATCATTCGAAAA+TGG | + | tig0040892:10294-10313 | Msa1460420:intergenic | 25.0% |
| TTTGTACGTGTAAAAAAGGA+AGG | + | tig0040892:7126-7145 | Msa1460420:intergenic | 30.0% | |
| GTACTTTGTACGTGTAAAAA+AGG | + | tig0040892:7130-7149 | Msa1460420:intergenic | 30.0% | |
| CATGTAAGTGATCGTAAATA+TGG | + | tig0040892:7227-7246 | Msa1460420:intergenic | 30.0% | |
| AGAAAATCTAGAGAATCGTA+GGG | + | tig0040892:7833-7852 | Msa1460420:intergenic | 30.0% | |
| !!! | TTTTTTGGGTAGACAAATGT+TGG | - | tig0040892:8074-8093 | Msa1460420:intron | 30.0% |
| !!! | TAGTGGTTACATTAGTTTTC+AGG | - | tig0040892:8102-8121 | Msa1460420:intron | 30.0% |
| !!! | AGTGGTTACATTAGTTTTCA+GGG | - | tig0040892:8103-8122 | Msa1460420:intron | 30.0% |
| !! | TTTTTAGAGAATCACTTGGT+TGG | - | tig0040892:8831-8850 | Msa1460420:intron | 30.0% |
| TTCATAGTGAACCTAAAAGT+AGG | + | tig0040892:8885-8904 | Msa1460420:intergenic | 30.0% | |
| AAAACCCTGATATTAAGGTT+AGG | - | tig0040892:9014-9033 | Msa1460420:CDS | 30.0% | |
| CATGCCTAGAAATTTATAGA+AGG | + | tig0040892:9068-9087 | Msa1460420:intergenic | 30.0% | |
| TTTACAAGTACTCATGAAGT+GGG | + | tig0040892:9430-9449 | Msa1460420:intergenic | 30.0% | |
| ! | TTTTACAAGTACTCATGAAG+TGG | + | tig0040892:9431-9450 | Msa1460420:intergenic | 30.0% |
| CATGAGTACTTGTAAAATCA+TGG | - | tig0040892:9434-9453 | Msa1460420:intron | 30.0% | |
| !! | CAAGTCAATACCATTTTTCT+TGG | - | tig0040892:9507-9526 | Msa1460420:intron | 30.0% |
| ATAACAAAGCAAAAGTGAGA+AGG | + | tig0040892:9561-9580 | Msa1460420:intergenic | 30.0% | |
| AAAATATCATGCGTTTGTCA+GGG | + | tig0040892:9700-9719 | Msa1460420:intergenic | 30.0% | |
| ! | CATGATATTTTCCATGTACA+AGG | - | tig0040892:9709-9728 | Msa1460420:CDS | 30.0% |
| TTGATGAAGTAATCCAAGTA+AGG | - | tig0040892:9794-9813 | Msa1460420:intron | 30.0% | |
| ! | ATTATTGAAGGGAGTACAAT+TGG | + | tig0040892:9885-9904 | Msa1460420:intergenic | 30.0% |
| TCATAAGTTAACCAAAAGGA+CGG | + | tig0040892:9932-9951 | Msa1460420:intergenic | 30.0% | |
| ACTTACTATTCATTCATCGT+TGG | - | tig0040892:10020-10039 | Msa1460420:intron | 30.0% | |
| CTTACTATTCATTCATCGTT+GGG | - | tig0040892:10021-10040 | Msa1460420:intron | 30.0% | |
| TAAGAGTTGCCAGTTATTTA+TGG | + | tig0040892:10150-10169 | Msa1460420:intergenic | 30.0% | |
| AATTAAGATTGCAAAGAAGC+CGG | - | tig0040892:10373-10392 | Msa1460420:CDS | 30.0% | |
| AACTCTAATATGGCCAATTA+TGG | + | tig0040892:10507-10526 | Msa1460420:intergenic | 30.0% | |
| GAATGAGAGAAACTCTAATA+TGG | + | tig0040892:10517-10536 | Msa1460420:intergenic | 30.0% | |
| CACTTATTCGATACATATAC+AGG | - | tig0040892:10564-10583 | Msa1460420:intron | 30.0% | |
| ! | ATGCTCAAAGATCATGTTTT+CGG | + | tig0040892:10656-10675 | Msa1460420:intergenic | 30.0% |
| TTTGCTTCTCAAATTTGAAG+TGG | - | tig0040892:10715-10734 | Msa1460420:intron | 30.0% | |
| ! | TTGCTTCTCAAATTTGAAGT+GGG | - | tig0040892:10716-10735 | Msa1460420:intron | 30.0% |
| TATTCAGATGCAGATGTAAA+TGG | + | tig0040892:10802-10821 | Msa1460420:intergenic | 30.0% | |
| TGATAGGTAGTTTGGGAATT+GGG | + | tig0040892:7177-7196 | Msa1460420:intergenic | 35.0% | |
| AACCATTGCTAAAGATGTCA+CGG | - | tig0040892:7339-7358 | Msa1460420:CDS | 35.0% | |
| ACATGGTTGAGATATACTAG+TGG | + | tig0040892:7526-7545 | Msa1460420:intergenic | 35.0% | |
| AGTATATCTCAACCATGTTG+TGG | - | tig0040892:7528-7547 | Msa1460420:intron | 35.0% | |
| CAGAAAATCTAGAGAATCGT+AGG | + | tig0040892:7834-7853 | Msa1460420:intergenic | 35.0% | |
| GATCATTACAATAGGCATCA+TGG | - | tig0040892:7943-7962 | Msa1460420:intron | 35.0% | |
| ! | GACAAATGTTGGTAAGTTAG+TGG | - | tig0040892:8085-8104 | Msa1460420:intron | 35.0% |
| !! | AGTTTTCAGGGATTTCACTT+TGG | - | tig0040892:8115-8134 | Msa1460420:intron | 35.0% |
| TCTTTCATTTGATGCAGGAT+AGG | - | tig0040892:8213-8232 | Msa1460420:CDS | 35.0% | |
| GAAGGAAAACTAACTTCTTG+CGG | + | tig0040892:8282-8301 | Msa1460420:intergenic | 35.0% | |
| TGGTCAAAAGAGTAAGTAGA+AGG | + | tig0040892:8354-8373 | Msa1460420:intergenic | 35.0% | |
| !!! | TTACTTAGGTTGGTTTTGTG+TGG | - | tig0040892:8449-8468 | Msa1460420:intron | 35.0% |
| TGCTGAAGAATGTAAGCATT+GGG | + | tig0040892:8763-8782 | Msa1460420:intergenic | 35.0% | |
| TTGCTGAAGAATGTAAGCAT+TGG | + | tig0040892:8764-8783 | Msa1460420:intergenic | 35.0% | |
| TTGACACAACTAACACCTTT+GGG | + | tig0040892:8804-8823 | Msa1460420:intergenic | 35.0% | |
| ATTGACACAACTAACACCTT+TGG | + | tig0040892:8805-8824 | Msa1460420:intergenic | 35.0% | |
| ATAGTGAACCTAAAAGTAGG+CGG | + | tig0040892:8882-8901 | Msa1460420:intergenic | 35.0% | |
| TAGGTTCACTATGAAACTAC+TGG | - | tig0040892:8890-8909 | Msa1460420:intron | 35.0% | |
| AGAGCAAAACCCTGATATTA+AGG | - | tig0040892:9009-9028 | Msa1460420:CDS | 35.0% | |
| ! | TTTTCCTTAGCTATATGGTG+TGG | - | tig0040892:9147-9166 | Msa1460420:intron | 35.0% |
| ! | CTTTTCCTCAATGTGCATTA+GGG | + | tig0040892:9276-9295 | Msa1460420:intergenic | 35.0% |
| ! | ACTTTTCCTCAATGTGCATT+AGG | + | tig0040892:9277-9296 | Msa1460420:intergenic | 35.0% |
| ! | AAAGTATCACCTTCACCATT+CGG | - | tig0040892:9292-9311 | Msa1460420:CDS | 35.0% |
| ACTAGTGCATATAATCATCG+AGG | + | tig0040892:9397-9416 | Msa1460420:intergenic | 35.0% | |
| AAATATCATGCGTTTGTCAG+GGG | + | tig0040892:9699-9718 | Msa1460420:intergenic | 35.0% | |
| GAAAATATCATGCGTTTGTC+AGG | + | tig0040892:9701-9720 | Msa1460420:intergenic | 35.0% | |
| CAATACCTTGGATCTTATGA+GGG | + | tig0040892:9735-9754 | Msa1460420:intergenic | 35.0% | |
| CAAAAGATTCATGCCTTACT+TGG | + | tig0040892:9810-9829 | Msa1460420:intergenic | 35.0% | |
| ! | AAAAAATGTAGCCGTCCTTT+TGG | - | tig0040892:9918-9937 | Msa1460420:intron | 35.0% |
| CGCTATAGTCCATAAATAAC+TGG | - | tig0040892:10138-10157 | Msa1460420:intron | 35.0% | |
| TGCATTAAAAGAAGGTTTGC+TGG | - | tig0040892:10225-10244 | Msa1460420:intron | 35.0% | |
| ! | ATGAGTTTTCCAGCATTTTC+CGG | + | tig0040892:10395-10414 | Msa1460420:intergenic | 35.0% |
| ATATCAACTGAATCATGTGC+TGG | - | tig0040892:10478-10497 | Msa1460420:intron | 35.0% | |
| ! | TTCTCAAATTTGAAGTGGGA+TGG | - | tig0040892:10720-10739 | Msa1460420:intron | 35.0% |
| ! | TCTCAAATTTGAAGTGGGAT+GGG | - | tig0040892:10721-10740 | Msa1460420:intron | 35.0% |
| CTCATGTTACAGTTTGTGTT+TGG | - | tig0040892:10759-10778 | Msa1460420:intron | 35.0% | |
| GTGTAAAAAAGGAAGGAGAC+TGG | + | tig0040892:7119-7138 | Msa1460420:intergenic | 40.0% | |
| GTGATAGGTAGTTTGGGAAT+TGG | + | tig0040892:7178-7197 | Msa1460420:intergenic | 40.0% | |
| ! | TTCGGTGTGATAGGTAGTTT+GGG | + | tig0040892:7184-7203 | Msa1460420:intergenic | 40.0% |
| ATACTAATGGCGTACGAGTT+CGG | + | tig0040892:7202-7221 | Msa1460420:intergenic | 40.0% | |
| TTCCGTGACATCTTTAGCAA+TGG | + | tig0040892:7344-7363 | Msa1460420:intergenic | 40.0% | |
| ATATCTCAACCATGTTGTGG+TGG | - | tig0040892:7531-7550 | Msa1460420:intron | 40.0% | |
| TGGTTGTGTTGCACAAATTG+CGG | - | tig0040892:7555-7574 | Msa1460420:CDS | 40.0% | |
| AAAACATTAAGGTCCCACGT+AGG | + | tig0040892:8177-8196 | Msa1460420:intergenic | 40.0% | |
| CTTAATGCGGCTACTAAAGT+TGG | + | tig0040892:8374-8393 | Msa1460420:intergenic | 40.0% | |
| ATACCAGTGTTTCCACTAGT+AGG | + | tig0040892:8562-8581 | Msa1460420:intergenic | 40.0% | |
| ACTAGTGGAAACACTGGTAT+TGG | - | tig0040892:8562-8581 | Msa1460420:intron | 40.0% | |
| !! | TGGAAACACTGGTATTGGTT+TGG | - | tig0040892:8567-8586 | Msa1460420:intron | 40.0% |
| !! | TGGTATTGGTTTGGCATTCA+TGG | - | tig0040892:8576-8595 | Msa1460420:intron | 40.0% |
| TGGATCAGTGAGAAGTAACT+CGG | + | tig0040892:8686-8705 | Msa1460420:intergenic | 40.0% | |
| ! | GATCCAGCTAAAGGTATGAA+AGG | - | tig0040892:8700-8719 | Msa1460420:intron | 40.0% |
| TGAAAATCCTGCAAACCCAA+AGG | - | tig0040892:8786-8805 | Msa1460420:CDS | 40.0% | |
| !! | ATTCTCTTCCGCCTACTTTT+AGG | - | tig0040892:8871-8890 | Msa1460420:intron | 40.0% |
| GGTTCCTATACCAGAAACAA+GGG | + | tig0040892:8954-8973 | Msa1460420:intergenic | 40.0% | |
| !! | CTTGTTTCTGGTATAGGAAC+CGG | - | tig0040892:8953-8972 | Msa1460420:CDS | 40.0% |
| GACAATACTGGACTTTCAAG+TGG | + | tig0040892:9175-9194 | Msa1460420:intergenic | 40.0% | |
| CTTGAAAGTCCAGTATTGTC+TGG | - | tig0040892:9175-9194 | Msa1460420:CDS | 40.0% | |
| AAAGTCCAGTATTGTCTGGA+GGG | - | tig0040892:9179-9198 | Msa1460420:CDS | 40.0% | |
| GATAAGAAGGAAAACTCACC+AGG | + | tig0040892:9208-9227 | Msa1460420:intergenic | 40.0% | |
| AAGTTCCCTAATGCACATTG+AGG | - | tig0040892:9268-9287 | Msa1460420:CDS | 40.0% | |
| AAGTATCACCTTCACCATTC+GGG | - | tig0040892:9293-9312 | Msa1460420:CDS | 40.0% | |
| TGACAGTTTATTTGCCTCGA+TGG | - | tig0040892:9336-9355 | Msa1460420:CDS | 40.0% | |
| TTTGCACATTTGATCCATCG+AGG | + | tig0040892:9353-9372 | Msa1460420:intergenic | 40.0% | |
| CATGGATTCTGATTTCTCTG+TGG | - | tig0040892:9452-9471 | Msa1460420:intron | 40.0% | |
| GGGGAATGATACATAGAAGA+GGG | + | tig0040892:9680-9699 | Msa1460420:intergenic | 40.0% | |
| AGGGGAATGATACATAGAAG+AGG | + | tig0040892:9681-9700 | Msa1460420:intergenic | 40.0% | |
| CCAATACCTTGGATCTTATG+AGG | + | tig0040892:9736-9755 | Msa1460420:intergenic | 40.0% | |
| CCTCATAAGATCCAAGGTAT+TGG | - | tig0040892:9733-9752 | Msa1460420:intron | 40.0% | |
| AAATCAACATCCAGAACACC+AGG | + | tig0040892:9772-9791 | Msa1460420:intergenic | 40.0% | |
| !!! | GTCTTTTTTCCCTCTCTTCT+TGG | - | tig0040892:9971-9990 | Msa1460420:intron | 40.0% |
| GTGCGTGAATTTGCATAATG+TGG | + | tig0040892:10002-10021 | Msa1460420:intergenic | 40.0% | |
| TCATTCATCGTTGGGAAAGA+TGG | - | tig0040892:10029-10048 | Msa1460420:intron | 40.0% | |
| AGTTTCAATAGCTTCTTCGC+TGG | + | tig0040892:10194-10213 | Msa1460420:intergenic | 40.0% | |
| TACCACTGAACTTGTGTTTC+AGG | - | tig0040892:10316-10335 | Msa1460420:intron | 40.0% | |
| ! | ACTGAACTTGTGTTTCAGGT+GGG | - | tig0040892:10320-10339 | Msa1460420:intron | 40.0% |
| AATCTTAATTGCAGCTGCTG+CGG | + | tig0040892:10363-10382 | Msa1460420:intergenic | 40.0% | |
| GTAACATGAGATGCTACCAT+TGG | + | tig0040892:10749-10768 | Msa1460420:intergenic | 40.0% | |
| !! | GTTCGGTGTGATAGGTAGTT+TGG | + | tig0040892:7185-7204 | Msa1460420:intergenic | 45.0% |
| TGCGGCAAAGCTAGAAATGA+TGG | - | tig0040892:7573-7592 | Msa1460420:CDS | 45.0% | |
| CTGTCTTTGACACTAGAGCA+AGG | + | tig0040892:7601-7620 | Msa1460420:intergenic | 45.0% | |
| CTTGCTCTAGTGTCAAAGAC+AGG | - | tig0040892:7599-7618 | Msa1460420:CDS | 45.0% | |
| ACCAACCAAACTACCTACGT+GGG | - | tig0040892:8161-8180 | Msa1460420:CDS | 45.0% | |
| TAGCATGATTGCAGATGCTG+AGG | - | tig0040892:8239-8258 | Msa1460420:intron | 45.0% | |
| ATTGCAGATGCTGAGGAGAA+AGG | - | tig0040892:8246-8265 | Msa1460420:intron | 45.0% | |
| TTCCACTAGTAGGCTCAATG+AGG | + | tig0040892:8552-8571 | Msa1460420:intergenic | 45.0% | |
| AAGACTCATTGAAGCAGGCA+TGG | + | tig0040892:8632-8651 | Msa1460420:intergenic | 45.0% | |
| CTCTCAAGACTCATTGAAGC+AGG | + | tig0040892:8637-8656 | Msa1460420:intergenic | 45.0% | |
| ! | AGAACCATTCTTCGCGCTTT+TGG | - | tig0040892:8658-8677 | Msa1460420:intron | 45.0% |
| CTTCTCACTGATCCAGCTAA+AGG | - | tig0040892:8691-8710 | Msa1460420:intron | 45.0% | |
| GCTCCTTTCATACCTTTAGC+TGG | + | tig0040892:8706-8725 | Msa1460420:intergenic | 45.0% | |
| ! | ACTAACACCTTTGGGTTTGC+AGG | + | tig0040892:8796-8815 | Msa1460420:intergenic | 45.0% |
| AAACTACTGGACCAGAGATC+TGG | - | tig0040892:8903-8922 | Msa1460420:intron | 45.0% | |
| ! | AGATCTGGAAAAGCTCTGGT+GGG | - | tig0040892:8918-8937 | Msa1460420:intron | 45.0% |
| !! | AGAGTTGATGCCCTTGTTTC+TGG | - | tig0040892:8941-8960 | Msa1460420:CDS | 45.0% |
| !! | GATGCCCTTGTTTCTGGTAT+AGG | - | tig0040892:8947-8966 | Msa1460420:CDS | 45.0% |
| CGGTTCCTATACCAGAAACA+AGG | + | tig0040892:8955-8974 | Msa1460420:intergenic | 45.0% | |
| GGTTCCACACCATATAGCTA+AGG | + | tig0040892:9154-9173 | Msa1460420:intergenic | 45.0% | |
| GAAAGTCCAGTATTGTCTGG+AGG | - | tig0040892:9178-9197 | Msa1460420:CDS | 45.0% | |
| AGTATCACCTTCACCATTCG+GGG | - | tig0040892:9294-9313 | Msa1460420:CDS | 45.0% | |
| ! | TCTTATGAGGGCCTTGTACA+TGG | + | tig0040892:9723-9742 | Msa1460420:intergenic | 45.0% |
| !! | AAGATCCAAGGTATTGGTGC+TGG | - | tig0040892:9739-9758 | Msa1460420:intron | 45.0% |
| CACCTGAAACACAAGTTCAG+TGG | + | tig0040892:10321-10340 | Msa1460420:intergenic | 45.0% | |
| CACTGAACTTGTGTTTCAGG+TGG | - | tig0040892:10319-10338 | Msa1460420:intron | 45.0% | |
| ! | CTGAACTTGTGTTTCAGGTG+GGG | - | tig0040892:10321-10340 | Msa1460420:intron | 45.0% |
| ! | TTTCAGGTGGGGATATCATC+TGG | - | tig0040892:10332-10351 | Msa1460420:intron | 45.0% |
| CATGTGCTGGAGTCCATAAT+TGG | - | tig0040892:10491-10510 | Msa1460420:intron | 45.0% | |
| AGATAACGCTCTCCAAAGCT+CGG | + | tig0040892:10598-10617 | Msa1460420:intergenic | 45.0% | |
| !!! | CTTTTTTTTTTTTTTTTTTT+TGG | - | tig0040892:8059-8078 | Msa1460420:intron | 5.0% |
| !!! | TTTTTTATATAAAAATATGA+TGG | - | tig0040892:9858-9877 | Msa1460420:intron | 5.0% |
| GGGACAGAGACAAAGGACAA+AGG | + | tig0040892:7157-7176 | Msa1460420:intergenic | 50.0% | |
| GGGAATTGGGACAGAGACAA+AGG | + | tig0040892:7164-7183 | Msa1460420:intergenic | 50.0% | |
| ! | CTCAACCATGTTGTGGTGGA+TGG | - | tig0040892:7535-7554 | Msa1460420:intron | 50.0% |
| CACAACCATCCACCACAACA+TGG | + | tig0040892:7543-7562 | Msa1460420:intergenic | 50.0% | |
| ! | GTTGGTGAGCTAACAGACAC+TGG | + | tig0040892:8147-8166 | Msa1460420:intergenic | 50.0% |
| CACCAACCAAACTACCTACG+TGG | - | tig0040892:8160-8179 | Msa1460420:intron | 50.0% | |
| TCCCACGTAGGTAGTTTGGT+TGG | + | tig0040892:8165-8184 | Msa1460420:intergenic | 50.0% | |
| AAGGTCCCACGTAGGTAGTT+TGG | + | tig0040892:8169-8188 | Msa1460420:intergenic | 50.0% | |
| GTCCTCATTGAGCCTACTAG+TGG | - | tig0040892:8547-8566 | Msa1460420:intron | 50.0% | |
| GAGCCTACTAGTGGAAACAC+TGG | - | tig0040892:8556-8575 | Msa1460420:intron | 50.0% | |
| GCATTCATGGCAGCTGCTAA+GGG | - | tig0040892:8589-8608 | Msa1460420:intron | 50.0% | |
| GTAGGCGGAAGAGAATGAGT+TGG | + | tig0040892:8867-8886 | Msa1460420:intergenic | 50.0% | |
| ! | CCAGAGCTTTTCCAGATCTC+TGG | + | tig0040892:8917-8936 | Msa1460420:intergenic | 50.0% |
| CCAGAGATCTGGAAAAGCTC+TGG | - | tig0040892:8914-8933 | Msa1460420:intron | 50.0% | |
| ! | GAGATCTGGAAAAGCTCTGG+TGG | - | tig0040892:8917-8936 | Msa1460420:intron | 50.0% |
| !! | GTTTCTGGTATAGGAACCGG+AGG | - | tig0040892:8956-8975 | Msa1460420:CDS | 50.0% |
| TGGTATAGGAACCGGAGGTA+CGG | - | tig0040892:8961-8980 | Msa1460420:CDS | 50.0% | |
| GGTTTCCCTCCAGACAATAC+TGG | + | tig0040892:9187-9206 | Msa1460420:intergenic | 50.0% | |
| GTATTGTCTGGAGGGAAACC+TGG | - | tig0040892:9187-9206 | Msa1460420:CDS | 50.0% | |
| AATGACTCCCCGAATGGTGA+AGG | + | tig0040892:9304-9323 | Msa1460420:intergenic | 50.0% | |
| GACATGAATGACTCCCCGAA+TGG | + | tig0040892:9310-9329 | Msa1460420:intergenic | 50.0% | |
| CAAGGCCCTCATAAGATCCA+AGG | - | tig0040892:9727-9746 | Msa1460420:intron | 50.0% | |
| TGAAGCCAGCACCAATACCT+TGG | + | tig0040892:9747-9766 | Msa1460420:intergenic | 50.0% | |
| !! | ATTGGTGCTGGCTTCATTCC+TGG | - | tig0040892:9751-9770 | Msa1460420:intron | 50.0% |
| TGGCTTCATTCCTGGTGTTC+TGG | - | tig0040892:9759-9778 | Msa1460420:intron | 50.0% | |
| GCAAAGAAGCCGGAAAATGC+TGG | - | tig0040892:10383-10402 | Msa1460420:CDS | 50.0% | |
| !! | CAGGTTGTTTTCCCGAGCTT+TGG | - | tig0040892:10583-10602 | Msa1460420:intron | 50.0% |
| GATAACGCTCTCCAAAGCTC+GGG | + | tig0040892:10597-10616 | Msa1460420:intergenic | 50.0% | |
| !! | GCGTACGAGTTCGGTGTGAT+AGG | + | tig0040892:7193-7212 | Msa1460420:intergenic | 55.0% |
| GGCATTCATGGCAGCTGCTA+AGG | - | tig0040892:8588-8607 | Msa1460420:intron | 55.0% | |
| ! | GGCACCAAAAGCGCGAAGAA+TGG | + | tig0040892:8665-8684 | Msa1460420:intergenic | 55.0% |
| AGCACCTGTTACCGTACCTC+CGG | + | tig0040892:8975-8994 | Msa1460420:intergenic | 55.0% | |
| GTGGCGTCACCAAGAAGAGA+GGG | + | tig0040892:9983-10002 | Msa1460420:intergenic | 55.0% | |
| TGTGGCGTCACCAAGAAGAG+AGG | + | tig0040892:9984-10003 | Msa1460420:intergenic | 55.0% | |
| TGAAGTGGGATGGGAGCCAA+TGG | - | tig0040892:10730-10749 | Msa1460420:intron | 55.0% | |
| ! | GGAACCGGAGGTACGGTAAC+AGG | - | tig0040892:8968-8987 | Msa1460420:CDS | 60.0% |
| ! | GGAGGTACGGTAACAGGTGC+TGG | - | tig0040892:8974-8993 | Msa1460420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040892 | gene | 7059 | 10912 | 7059 | ID=Msa1460420;Name=Msa1460420 |
| tig0040892 | mRNA | 7059 | 10912 | 7059 | ID=Msa1460420-mRNA-1;Parent=Msa1460420;Name=Msa1460420-mRNA-1;_AED=0.36;_eAED=0.36;_QI=164|1|1|1|0.9|0.81|11|234|326 |
| tig0040892 | exon | 7059 | 7385 | 7059 | ID=Msa1460420-mRNA-1:exon:22733;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 7553 | 7633 | 7553 | ID=Msa1460420-mRNA-1:exon:22732;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 7725 | 7784 | 7725 | ID=Msa1460420-mRNA-1:exon:22731;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 8161 | 8240 | 8161 | ID=Msa1460420-mRNA-1:exon:22730;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 8763 | 8814 | 8763 | ID=Msa1460420-mRNA-1:exon:22729;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 8941 | 9078 | 8941 | ID=Msa1460420-mRNA-1:exon:22728;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 9164 | 9427 | 9164 | ID=Msa1460420-mRNA-1:exon:22727;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 9684 | 9741 | 9684 | ID=Msa1460420-mRNA-1:exon:22726;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 10351 | 10463 | 10351 | ID=Msa1460420-mRNA-1:exon:22725;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 10608 | 10665 | 10608 | ID=Msa1460420-mRNA-1:exon:22724;Parent=Msa1460420-mRNA-1 |
| tig0040892 | exon | 10765 | 10912 | 10765 | ID=Msa1460420-mRNA-1:exon:22723;Parent=Msa1460420-mRNA-1 |
| tig0040892 | five_prime_UTR | 10765 | 10912 | 10765 | ID=Msa1460420-mRNA-1:five_prime_utr;Parent=Msa1460420-mRNA-1 |
| tig0040892 | five_prime_UTR | 10650 | 10665 | 10650 | ID=Msa1460420-mRNA-1:five_prime_utr;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 10608 | 10649 | 10608 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 10351 | 10463 | 10351 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 9684 | 9741 | 9684 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 9164 | 9427 | 9164 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 8941 | 9078 | 8941 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 8763 | 8814 | 8763 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 8161 | 8240 | 8161 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 7725 | 7784 | 7725 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 7553 | 7633 | 7553 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | CDS | 7293 | 7385 | 7293 | ID=Msa1460420-mRNA-1:cds;Parent=Msa1460420-mRNA-1 |
| tig0040892 | three_prime_UTR | 7059 | 7292 | 7059 | ID=Msa1460420-mRNA-1:three_prime_utr;Parent=Msa1460420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
