Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179270 | PNY16225.1 | 98.773 | 326 | 3 | 1 | 1 | 326 | 1 | 325 | 0.0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179270 | sp|Q43317|CYSK_CITLA | 89.231 | 325 | 34 | 1 | 1 | 325 | 1 | 324 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179270 | A0A2K3PLS0 | 98.773 | 326 | 3 | 1 | 1 | 326 | 1 | 325 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012200 | Msa0179270 | 0.811789 | 5.874170e-51 | -8.615850e-47 |
| Msa0042420 | Msa0179270 | 0.925349 | 2.068657e-90 | -8.615850e-47 |
| Msa0179270 | Msa0641130 | 0.800163 | 1.639603e-48 | -8.615850e-47 |
| Msa0179270 | Msa1030810 | 0.805224 | 1.480301e-49 | -8.615850e-47 |
| Msa0179270 | Msa1069890 | 0.811380 | 7.208618e-51 | -8.615850e-47 |
| Msa0179270 | Msa1460420 | 0.840130 | 1.046753e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179270 | MtrunA17_Chr1g0191041 | 97.546 | 326 | 7 | 1 | 1 | 326 | 1 | 325 | 0.0 | 635 |
| Msa0179270 | MtrunA17_Chr5g0394491 | 88.308 | 325 | 37 | 1 | 1 | 325 | 1 | 324 | 0.0 | 530 |
| Msa0179270 | MtrunA17_Chr1g0205381 | 87.385 | 325 | 40 | 1 | 1 | 325 | 1 | 324 | 0.0 | 526 |
| Msa0179270 | MtrunA17_Chr4g0045721 | 69.782 | 321 | 96 | 1 | 2 | 322 | 41 | 360 | 6.50e-168 | 471 |
| Msa0179270 | MtrunA17_Chr1g0191051 | 74.613 | 323 | 81 | 1 | 3 | 325 | 2 | 323 | 2.35e-167 | 468 |
| Msa0179270 | MtrunA17_Chr4g0045781 | 73.101 | 316 | 84 | 1 | 7 | 322 | 65 | 379 | 1.95e-159 | 450 |
| Msa0179270 | MtrunA17_Chr4g0045771 | 65.732 | 321 | 100 | 3 | 2 | 322 | 41 | 351 | 1.06e-154 | 437 |
| Msa0179270 | MtrunA17_Chr1g0191061 | 64.167 | 360 | 82 | 3 | 12 | 325 | 25 | 383 | 1.28e-148 | 423 |
| Msa0179270 | MtrunA17_Chr7g0248021 | 63.407 | 317 | 115 | 1 | 6 | 322 | 59 | 374 | 1.41e-144 | 412 |
| Msa0179270 | MtrunA17_Chr7g0254401 | 62.696 | 319 | 108 | 2 | 4 | 322 | 61 | 368 | 5.23e-135 | 388 |
| Msa0179270 | MtrunA17_Chr1g0191071 | 68.773 | 269 | 79 | 1 | 57 | 325 | 1 | 264 | 3.79e-116 | 336 |
| Msa0179270 | MtrunA17_Chr5g0446431 | 29.379 | 354 | 190 | 7 | 12 | 308 | 48 | 398 | 1.70e-40 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179270 | AT4G14880.5 | 80.312 | 320 | 62 | 1 | 6 | 325 | 3 | 321 | 1.17e-179 | 499 |
| Msa0179270 | AT4G14880.3 | 80.312 | 320 | 62 | 1 | 6 | 325 | 3 | 321 | 1.17e-179 | 499 |
| Msa0179270 | AT4G14880.4 | 80.312 | 320 | 62 | 1 | 6 | 325 | 3 | 321 | 1.17e-179 | 499 |
| Msa0179270 | AT4G14880.2 | 80.312 | 320 | 62 | 1 | 6 | 325 | 3 | 321 | 1.17e-179 | 499 |
| Msa0179270 | AT4G14880.1 | 80.312 | 320 | 62 | 1 | 6 | 325 | 3 | 321 | 1.17e-179 | 499 |
| Msa0179270 | AT2G43750.1 | 75.000 | 316 | 78 | 1 | 7 | 322 | 74 | 388 | 3.84e-164 | 463 |
| Msa0179270 | AT2G43750.2 | 75.000 | 316 | 78 | 1 | 7 | 322 | 74 | 388 | 3.84e-164 | 463 |
| Msa0179270 | AT3G59760.1 | 74.295 | 319 | 81 | 1 | 4 | 322 | 109 | 426 | 8.92e-164 | 464 |
| Msa0179270 | AT3G59760.3 | 74.295 | 319 | 81 | 1 | 4 | 322 | 109 | 426 | 9.27e-164 | 463 |
| Msa0179270 | AT3G04940.1 | 70.497 | 322 | 94 | 1 | 1 | 322 | 1 | 321 | 5.81e-158 | 445 |
| Msa0179270 | AT3G04940.2 | 70.497 | 322 | 94 | 1 | 1 | 322 | 1 | 321 | 5.81e-158 | 445 |
| Msa0179270 | AT5G28020.2 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 6.65e-157 | 442 |
| Msa0179270 | AT5G28020.4 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 6.65e-157 | 442 |
| Msa0179270 | AT5G28020.1 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 6.65e-157 | 442 |
| Msa0179270 | AT5G28020.3 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 6.65e-157 | 442 |
| Msa0179270 | AT5G28020.6 | 72.136 | 323 | 89 | 1 | 3 | 325 | 2 | 323 | 6.65e-157 | 442 |
| Msa0179270 | AT3G59760.2 | 70.154 | 325 | 94 | 3 | 4 | 326 | 109 | 432 | 3.64e-149 | 426 |
| Msa0179270 | AT3G22460.1 | 77.323 | 269 | 41 | 1 | 57 | 325 | 1 | 249 | 3.99e-147 | 414 |
| Msa0179270 | AT5G28030.1 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.06e-146 | 416 |
| Msa0179270 | AT5G28030.4 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.06e-146 | 416 |
| Msa0179270 | AT5G28030.5 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.06e-146 | 416 |
| Msa0179270 | AT5G28030.2 | 69.659 | 323 | 97 | 1 | 3 | 325 | 2 | 323 | 1.06e-146 | 416 |
| Msa0179270 | AT3G61440.1 | 61.661 | 313 | 119 | 1 | 10 | 322 | 51 | 362 | 3.75e-135 | 389 |
| Msa0179270 | AT3G03630.1 | 63.208 | 318 | 106 | 2 | 7 | 324 | 98 | 404 | 8.41e-132 | 381 |
| Msa0179270 | AT3G61440.2 | 63.534 | 266 | 97 | 0 | 57 | 322 | 1 | 266 | 3.41e-118 | 342 |
| Msa0179270 | AT5G28030.3 | 68.000 | 250 | 79 | 1 | 3 | 252 | 2 | 250 | 3.79e-112 | 326 |
| Msa0179270 | AT3G22460.2 | 83.598 | 189 | 30 | 1 | 1 | 189 | 1 | 188 | 5.85e-112 | 323 |
| Msa0179270 | AT3G61440.4 | 60.076 | 263 | 104 | 1 | 10 | 272 | 51 | 312 | 8.43e-109 | 320 |
| Msa0179270 | AT3G61440.3 | 62.917 | 240 | 89 | 0 | 83 | 322 | 2 | 241 | 9.41e-106 | 309 |
| Msa0179270 | AT5G28020.5 | 70.464 | 237 | 70 | 0 | 89 | 325 | 1 | 237 | 9.47e-106 | 309 |
| Msa0179270 | AT1G55880.1 | 28.767 | 365 | 197 | 10 | 3 | 308 | 35 | 395 | 3.21e-36 | 135 |
| Msa0179270 | AT1G55880.2 | 30.677 | 251 | 129 | 7 | 3 | 211 | 35 | 282 | 2.14e-29 | 115 |
Find 96 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTTGATGCCCTTGTTTC+TGG | 0.184437 | 1_4:+66780166 | Msa0179270:CDS |
| TTGTCATAAGTTTGAAATAA+TGG | 0.200774 | 1_4:+66782095 | Msa0179270:three_prime_UTR |
| TAGAAAATTGCTAAATACTA+TGG | 0.267447 | 1_4:+66777521 | Msa0179270:intron |
| ATAATCCTAACCTTAATATC+AGG | 0.274666 | 1_4:-66780244 | None:intergenic |
| TGGCTTCATTCCTGGTGTTC+TGG | 0.280161 | 1_4:+66780984 | Msa0179270:CDS |
| ACTAACACCTTTGGGTTTGC+AGG | 0.288673 | 1_4:-66780018 | None:intergenic |
| TATTCAGATGCAGATGTAAA+TGG | 0.295214 | 1_4:-66782024 | None:intergenic |
| ATTGGTGCTGGCTTCATTCC+TGG | 0.295467 | 1_4:+66780976 | Msa0179270:CDS |
| AGAACCATTCTTCGCGCTTT+TGG | 0.297151 | 1_4:+66779883 | Msa0179270:CDS |
| TGTCATAAGTTTGAAATAAT+GGG | 0.317444 | 1_4:+66782096 | Msa0179270:three_prime_UTR |
| GTTCGGTGTGATAGGTAGTT+TGG | 0.317527 | 1_4:-66777402 | None:intergenic |
| TGCATTAAAAGAAGGTTTGC+TGG | 0.326558 | 1_4:+66781450 | Msa0179270:CDS |
| AGAGCAAAACCCTGATATTA+AGG | 0.326681 | 1_4:+66780234 | Msa0179270:CDS |
| GGCATTCATGGCAGCTGCTA+AGG | 0.329627 | 1_4:+66779813 | Msa0179270:CDS |
| TGATAGGTAGTTTGGGAATT+GGG | 0.337712 | 1_4:-66777394 | None:intergenic |
| TGGTATTGGTTTGGCATTCA+TGG | 0.343061 | 1_4:+66779801 | Msa0179270:CDS |
| GATGCCCTTGTTTCTGGTAT+AGG | 0.346426 | 1_4:+66780172 | Msa0179270:CDS |
| CTCATGTTACAGTTTGTGTT+TGG | 0.354810 | 1_4:+66781984 | Msa0179270:three_prime_UTR |
| GTGATAGGTAGTTTGGGAAT+TGG | 0.379220 | 1_4:-66777395 | None:intergenic |
| GCGTACGAGTTCGGTGTGAT+AGG | 0.401469 | 1_4:-66777410 | None:intergenic |
| GGAACCGGAGGTACGGTAAC+AGG | 0.406043 | 1_4:+66780193 | Msa0179270:CDS |
| CTTGTTTCTGGTATAGGAAC+CGG | 0.413375 | 1_4:+66780178 | Msa0179270:CDS |
| TAGGTTCACTATGAAACTAC+TGG | 0.414969 | 1_4:+66780115 | Msa0179270:intron |
| AAACTTCTTGCATTAAAAGA+AGG | 0.415012 | 1_4:+66781442 | Msa0179270:CDS |
| CCAATACCTTGGATCTTATG+AGG | 0.417262 | 1_4:-66780958 | None:intergenic |
| GGTTTCCCTCCAGACAATAC+TGG | 0.417936 | 1_4:-66780409 | None:intergenic |
| TAATAAATGGCGTACGAGTT+CGG | 0.420748 | 1_4:-66777419 | None:intergenic |
| TTCGGTGTGATAGGTAGTTT+GGG | 0.421038 | 1_4:-66777401 | None:intergenic |
| AAACTACTGGACCAGAGATC+TGG | 0.427472 | 1_4:+66780128 | Msa0179270:CDS |
| GCTCCTTTCATACCTTTAGC+TGG | 0.435185 | 1_4:-66779928 | None:intergenic |
| TGCTGAAGAATGTAAGCATT+GGG | 0.439335 | 1_4:-66779985 | None:intergenic |
| ACTAGTGGAAACACTGGTAT+TGG | 0.441486 | 1_4:+66779787 | Msa0179270:CDS |
| TGGAAACACTGGTATTGGTT+TGG | 0.446534 | 1_4:+66779792 | Msa0179270:CDS |
| TTCTCAAATTTGAAGTGGGA+TGG | 0.475311 | 1_4:+66781945 | Msa0179270:three_prime_UTR |
| GCAAAGAAGCCGGAAAATGC+TGG | 0.482832 | 1_4:+66781608 | Msa0179270:CDS |
| CTTGAAAGTCCAGTATTGTC+TGG | 0.488243 | 1_4:+66780400 | Msa0179270:CDS |
| CTCTCAAGACTCATTGAAGC+AGG | 0.492620 | 1_4:-66779859 | None:intergenic |
| GGAGGTACGGTAACAGGTGC+TGG | 0.494965 | 1_4:+66780199 | Msa0179270:CDS |
| CCAGAGATCTGGAAAAGCTC+TGG | 0.501405 | 1_4:+66780139 | Msa0179270:CDS |
| TGCGGCAAAGCTAGAAATGA+TGG | 0.501879 | 1_4:+66778802 | Msa0179270:CDS |
| ATTGCAGATGCTGAGGAGAA+AGG | 0.503285 | 1_4:+66779471 | Msa0179270:CDS |
| CCTCATAAGATCCAAGGTAT+TGG | 0.505205 | 1_4:+66780958 | Msa0179270:CDS |
| GTATTGTCTGGAGGGAAACC+TGG | 0.505854 | 1_4:+66780412 | Msa0179270:CDS |
| AGTTTCAATAGCTTCTTCGC+TGG | 0.508262 | 1_4:-66781416 | None:intergenic |
| TTTCAGGTGGGGATATCATC+TGG | 0.511463 | 1_4:+66781557 | Msa0179270:intron |
| TTGCTGAAGAATGTAAGCAT+TGG | 0.512878 | 1_4:-66779986 | None:intergenic |
| AGCACCTGTTACCGTACCTC+CGG | 0.515405 | 1_4:-66780197 | None:intergenic |
| GCATTCATGGCAGCTGCTAA+GGG | 0.522984 | 1_4:+66779814 | Msa0179270:CDS |
| TTCCGTGACATCTTTAGCAA+TGG | 0.523401 | 1_4:-66777559 | None:intergenic |
| GTTCTCACTGATCCAGCTAA+AGG | 0.528590 | 1_4:+66779916 | Msa0179270:CDS |
| AGATAACGCTCTCCAAAGCT+CGG | 0.532448 | 1_4:-66781820 | None:intergenic |
| AAGATCCAAGGTATTGGTGC+TGG | 0.533186 | 1_4:+66780964 | Msa0179270:CDS |
| TAATCCTAACCTTAATATCA+GGG | 0.533978 | 1_4:-66780243 | None:intergenic |
| TCTCAAATTTGAAGTGGGAT+GGG | 0.536307 | 1_4:+66781946 | Msa0179270:three_prime_UTR |
| TGAAGCCAGCACCAATACCT+TGG | 0.537270 | 1_4:-66780969 | None:intergenic |
| GGCACCAAAAGCGCGAAGAA+TGG | 0.537288 | 1_4:-66779887 | None:intergenic |
| TTGCTTCTCAAATTTGAAGT+GGG | 0.540219 | 1_4:+66781941 | Msa0179270:three_prime_UTR |
| GAGATCTGGAAAAGCTCTGG+TGG | 0.541486 | 1_4:+66780142 | Msa0179270:CDS |
| CGGTTCCTATACCAGAAACA+AGG | 0.542856 | 1_4:-66780177 | None:intergenic |
| TTTGCTTCTCAAATTTGAAG+TGG | 0.549353 | 1_4:+66781940 | Msa0179270:three_prime_UTR |
| GATAACGCTCTCCAAAGCTC+GGG | 0.550231 | 1_4:-66781819 | None:intergenic |
| ATACCAGTGTTTCCACTAGT+AGG | 0.551210 | 1_4:-66779784 | None:intergenic |
| TGGTATAGGAACCGGAGGTA+CGG | 0.570019 | 1_4:+66780186 | Msa0179270:CDS |
| CTTGCTCTAGTGTCAAAGAC+AGG | 0.573863 | 1_4:+66778828 | Msa0179270:CDS |
| AAAGTCCAGTATTGTCTGGA+GGG | 0.575979 | 1_4:+66780404 | Msa0179270:CDS |
| AATCTTAATTGCAGCTGCTG+CGG | 0.576543 | 1_4:-66781585 | None:intergenic |
| GTCCTCATTGAGCCTACTAG+TGG | 0.580307 | 1_4:+66779772 | Msa0179270:CDS |
| GATCCAGCTAAAGGTATGAA+AGG | 0.584953 | 1_4:+66779925 | Msa0179270:CDS |
| AATTAAGATTGCAAAGAAGC+CGG | 0.588073 | 1_4:+66781598 | Msa0179270:CDS |
| GAAGGAAAACTAACTTCTTG+CGG | 0.588318 | 1_4:-66779504 | None:intergenic |
| AGTATATCTCAACCATGTTG+TGG | 0.590226 | 1_4:+66777743 | Msa0179270:CDS |
| TGAAGTGGGATGGGAGCCAA+TGG | 0.591374 | 1_4:+66781955 | Msa0179270:three_prime_UTR |
| AGCTGTTCAGAAAGCTGAAG+AGG | 0.591893 | 1_4:+66779948 | Msa0179270:CDS |
| AACCATTGCTAAAGATGTCA+CGG | 0.593791 | 1_4:+66777557 | Msa0179270:CDS |
| GACAATACTGGACTTTCAAG+TGG | 0.596668 | 1_4:-66780397 | None:intergenic |
| AAGACTCATTGAAGCAGGCA+TGG | 0.602785 | 1_4:-66779854 | None:intergenic |
| CAAGGCCCTCATAAGATCCA+AGG | 0.604638 | 1_4:+66780952 | Msa0179270:intron |
| GTAACATGAGATGCTACCAT+TGG | 0.604856 | 1_4:-66781971 | None:intergenic |
| CAATACCTTGGATCTTATGA+GGG | 0.606155 | 1_4:-66780957 | None:intergenic |
| GGGAATTGGGACAGAGACAA+AGG | 0.606225 | 1_4:-66777381 | None:intergenic |
| TAGCATGATTGCAGATGCTG+AGG | 0.608575 | 1_4:+66779464 | Msa0179270:CDS |
| AAATCAACATCCAGAACACC+AGG | 0.609679 | 1_4:-66780994 | None:intergenic |
| AGATCTGGAAAAGCTCTGGT+GGG | 0.624158 | 1_4:+66780143 | Msa0179270:CDS |
| GAAAGTCCAGTATTGTCTGG+AGG | 0.625339 | 1_4:+66780403 | Msa0179270:CDS |
| GAGCCTACTAGTGGAAACAC+TGG | 0.626296 | 1_4:+66779781 | Msa0179270:CDS |
| TGAAAATCCTGCAAACCCAA+AGG | 0.632579 | 1_4:+66780011 | Msa0179270:CDS |
| TGGTTGTGTTGCACAAATTG+CGG | 0.632724 | 1_4:+66778784 | Msa0179270:CDS |
| AAAATTGCTAAATACTATGG+CGG | 0.639638 | 1_4:+66777524 | Msa0179270:exon |
| CTGTCTTTGACACTAGAGCA+AGG | 0.647667 | 1_4:-66778827 | None:intergenic |
| TGGATCAGTGAGAACTAACT+CGG | 0.649731 | 1_4:-66779908 | None:intergenic |
| AACGCCCATGATCCACAACA+TGG | 0.652101 | 1_4:-66777755 | None:intergenic |
| GTTTCTGGTATAGGAACCGG+AGG | 0.680508 | 1_4:+66780181 | Msa0179270:CDS |
| TTCCACTAGTAGGCTCAATG+AGG | 0.683327 | 1_4:-66779774 | None:intergenic |
| ACATGGTTGAGATATACTAG+TGG | 0.684632 | 1_4:-66777738 | None:intergenic |
| GGGACAGAGACAAAGGACAA+AGG | 0.690625 | 1_4:-66777374 | None:intergenic |
| GGTTCCTATACCAGAAACAA+GGG | 0.692573 | 1_4:-66780176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTATAATCAATATCAT+TGG | + | chr1_4:66778155-66778174 | Msa0179270:intron | 10.0% |
| !! | GTTGATTATATAAACATATA+TGG | - | chr1_4:66777593-66777612 | None:intergenic | 15.0% |
| !!! | ACATCACTTTTTTTTTTTTT+TGG | + | chr1_4:66777611-66777630 | Msa0179270:intron | 15.0% |
| !!! | ATTGATTAAACTAATTTTAG+TGG | - | chr1_4:66778128-66778147 | None:intergenic | 15.0% |
| !! | ACAAAATTTATTTCAAAAGT+TGG | + | chr1_4:66778369-66778388 | Msa0179270:intron | 15.0% |
| !!! | TTTCTGAGATTTTTTAAAAT+TGG | + | chr1_4:66778859-66778878 | Msa0179270:intron | 15.0% |
| !!! | TATCATTTTATCTTTTTTGT+TGG | + | chr1_4:66779013-66779032 | Msa0179270:intron | 15.0% |
| !!! | ATCATTTTATCTTTTTTGTT+GGG | + | chr1_4:66779014-66779033 | Msa0179270:intron | 15.0% |
| !!! | AAATTTTAAATCGTTTACTT+AGG | + | chr1_4:66779660-66779679 | Msa0179270:intron | 15.0% |
| !!! | TAATAAAACTTTTTTCTTGT+TGG | - | chr1_4:66780811-66780830 | None:intergenic | 15.0% |
| !! | ACTTAAACTTTATTATTGAA+GGG | - | chr1_4:66781121-66781140 | None:intergenic | 15.0% |
| !! | TACTTAAACTTTATTATTGA+AGG | - | chr1_4:66781122-66781141 | None:intergenic | 15.0% |
| !! | TAATAGAATATACAAACATT+CGG | - | chr1_4:66781335-66781354 | None:intergenic | 15.0% |
| !! | AGCAAAAAATTAATTTCAAA+TGG | - | chr1_4:66781926-66781945 | None:intergenic | 15.0% |
| !! | ATCGTAAATATGGTAATAAA+TGG | - | chr1_4:66777435-66777454 | None:intergenic | 20.0% |
| !! | GATAAGAAATTAAATTGAAG+AGG | - | chr1_4:66777481-66777500 | None:intergenic | 20.0% |
| !! | TAGAAAATTGCTAAATACTA+TGG | + | chr1_4:66777521-66777540 | Msa0179270:intron | 20.0% |
| !! | GTCATAAATCGAAATAAAAT+AGG | - | chr1_4:66778679-66778698 | None:intergenic | 20.0% |
| !! | CACTTTATATAATGATTCTA+AGG | - | chr1_4:66778931-66778950 | None:intergenic | 20.0% |
| !!! | AATGATAGAAAGATTGATTT+TGG | - | chr1_4:66779000-66779019 | None:intergenic | 20.0% |
| !!! | ATAATGAGATTGATTTCAAT+TGG | + | chr1_4:66779127-66779146 | Msa0179270:intron | 20.0% |
| !! | ATAGCAACTAAAAAACATTA+AGG | - | chr1_4:66779413-66779432 | None:intergenic | 20.0% |
| !! | TCATGAATTAAATATCAAGA+AGG | - | chr1_4:66779525-66779544 | None:intergenic | 20.0% |
| !!! | ATCTCTTATTTGATAATCAA+TGG | - | chr1_4:66779708-66779727 | None:intergenic | 20.0% |
| !! | ATTACCTTCTATAAATTTCT+AGG | + | chr1_4:66780286-66780305 | Msa0179270:intron | 20.0% |
| !!! | ATTTTTTTTCCTTAGCTATA+TGG | + | chr1_4:66780367-66780386 | Msa0179270:intron | 20.0% |
| !!! | TTAACTTGCAATAGAAATAA+AGG | - | chr1_4:66780455-66780474 | None:intergenic | 20.0% |
| !! | ATATTCATAAGTTAACCAAA+AGG | - | chr1_4:66781161-66781180 | None:intergenic | 20.0% |
| !!! | TTGTCATAAGTTTGAAATAA+TGG | + | chr1_4:66782095-66782114 | Msa0179270:three_prime_UTR | 20.0% |
| !!! | TGTCATAAGTTTGAAATAAT+GGG | + | chr1_4:66782096-66782115 | Msa0179270:three_prime_UTR | 20.0% |
| ! | AAAATTGCTAAATACTATGG+CGG | + | chr1_4:66777524-66777543 | Msa0179270:exon | 25.0% |
| !!! | TTTTGAAATGTACAGTTGAT+TGG | + | chr1_4:66777708-66777727 | Msa0179270:intron | 25.0% |
| ! | ACAAAACGTAGTTAATTCTA+AGG | + | chr1_4:66777970-66777989 | Msa0179270:intron | 25.0% |
| ! | GGTATAATAGTTCATAGTTA+AGG | - | chr1_4:66778250-66778269 | None:intergenic | 25.0% |
| !! | TTGAAAGCAATTATTTCTCA+CGG | - | chr1_4:66778449-66778468 | None:intergenic | 25.0% |
| !! | GTGTGCTAAATAAAATTTTG+AGG | - | chr1_4:66778593-66778612 | None:intergenic | 25.0% |
| !! | TGATTTCAATTGGTTTAAGT+TGG | + | chr1_4:66779137-66779156 | Msa0179270:intron | 25.0% |
| !! | CATCATGGAACATATAATTT+TGG | + | chr1_4:66779188-66779207 | Msa0179270:intron | 25.0% |
| ! | TATGAAACAGAATTAAGTCA+TGG | - | chr1_4:66779237-66779256 | None:intergenic | 25.0% |
| !! | AACATTCAGAATAGATCTTT+TGG | - | chr1_4:66779262-66779281 | None:intergenic | 25.0% |
| ! | ATAATTCTTTCATTTGATGC+AGG | + | chr1_4:66779433-66779452 | Msa0179270:intron | 25.0% |
| ! | TGAATGACTTATTCTTAATG+CGG | - | chr1_4:66779612-66779631 | None:intergenic | 25.0% |
| ! | TTTAAATCGTTTACTTAGGT+TGG | + | chr1_4:66779664-66779683 | Msa0179270:intron | 25.0% |
| ! | AATAAGAGATGAAATTCACA+AGG | + | chr1_4:66779718-66779737 | Msa0179270:intron | 25.0% |
| !!! | GTTATTTTTAGAGAATCACT+TGG | + | chr1_4:66780052-66780071 | Msa0179270:intron | 25.0% |
| ! | TAATCCTAACCTTAATATCA+GGG | - | chr1_4:66780246-66780265 | None:intergenic | 25.0% |
| ! | ATAATCCTAACCTTAATATC+AGG | - | chr1_4:66780247-66780266 | None:intergenic | 25.0% |
| !! | ATTTTCCTTGGAAATCAAAA+CGG | + | chr1_4:66780744-66780763 | Msa0179270:intron | 25.0% |
| !!! | ACATTGCTTTGTTATTTGAA+TGG | + | chr1_4:66780853-66780872 | Msa0179270:intron | 25.0% |
| ! | AAACTTCTTGCATTAAAAGA+AGG | + | chr1_4:66781442-66781461 | Msa0179270:CDS | 25.0% |
| ! | AATAGCATATCATTCGAAAA+TGG | - | chr1_4:66781519-66781538 | None:intergenic | 25.0% |
| CATGTAAGTGATCGTAAATA+TGG | - | chr1_4:66777445-66777464 | None:intergenic | 30.0% | |
| ! | TTCTTTTAGCGATACAAAGA+AGG | - | chr1_4:66777826-66777845 | None:intergenic | 30.0% |
| !! | ATGTTTTCCACTTTTACCTA+CGG | + | chr1_4:66777947-66777966 | Msa0179270:intron | 30.0% |
| !! | ACATTATTGACTTCTACCTA+CGG | + | chr1_4:66778007-66778026 | Msa0179270:intron | 30.0% |
| ! | TCCATTGCTCGTTTAATTTA+TGG | + | chr1_4:66778344-66778363 | Msa0179270:intron | 30.0% |
| ACCATAAATTAAACGAGCAA+TGG | - | chr1_4:66778348-66778367 | None:intergenic | 30.0% | |
| ! | TGAAAGCAATTATTTCTCAC+GGG | - | chr1_4:66778448-66778467 | None:intergenic | 30.0% |
| TTATGTCACATGTGAATTTG+CGG | + | chr1_4:66778709-66778728 | Msa0179270:intron | 30.0% | |
| AGAAAATCTAGAGAATCGTA+GGG | - | chr1_4:66779063-66779082 | None:intergenic | 30.0% | |
| GATTATGAGATCATTGCAAT+AGG | + | chr1_4:66779165-66779184 | Msa0179270:intron | 30.0% | |
| GACAAATGTTAGTAAGTTAG+TGG | + | chr1_4:66779310-66779329 | Msa0179270:intron | 30.0% | |
| !!! | TAGTGGTTACATTAGTTTTC+AGG | + | chr1_4:66779327-66779346 | Msa0179270:intron | 30.0% |
| !!! | AGTGGTTACATTAGTTTTCA+GGG | + | chr1_4:66779328-66779347 | Msa0179270:intron | 30.0% |
| !! | TTTTTAGAGAATCACTTGGT+TGG | + | chr1_4:66780056-66780075 | Msa0179270:intron | 30.0% |
| TTCATAGTGAACCTAAAAGT+AGG | - | chr1_4:66780110-66780129 | None:intergenic | 30.0% | |
| AAAACCCTGATATTAAGGTT+AGG | + | chr1_4:66780239-66780258 | Msa0179270:intron | 30.0% | |
| CATGCCTAGAAATTTATAGA+AGG | - | chr1_4:66780293-66780312 | None:intergenic | 30.0% | |
| TTTACAAGTACTCATGAAGT+GGG | - | chr1_4:66780655-66780674 | None:intergenic | 30.0% | |
| ! | TTTTACAAGTACTCATGAAG+TGG | - | chr1_4:66780656-66780675 | None:intergenic | 30.0% |
| CATGAGTACTTGTAAAATCA+TGG | + | chr1_4:66780659-66780678 | Msa0179270:intron | 30.0% | |
| !!! | GTTTTGATTTCCAAGGAAAA+TGG | - | chr1_4:66780745-66780764 | None:intergenic | 30.0% |
| ATAACAAAGCAAAAGTGAGA+AGG | - | chr1_4:66780786-66780805 | None:intergenic | 30.0% | |
| AAAATATCATGCGTTTGTCA+GGG | - | chr1_4:66780925-66780944 | None:intergenic | 30.0% | |
| ! | CATGATATTTTCCATGTACA+AGG | + | chr1_4:66780934-66780953 | Msa0179270:intron | 30.0% |
| TTGATGAAGTAATCCAAGTA+AGG | + | chr1_4:66781019-66781038 | Msa0179270:intron | 30.0% | |
| ! | ATTATTGAAGGGAGTACAAT+TGG | - | chr1_4:66781110-66781129 | None:intergenic | 30.0% |
| TCATAAGTTAACCAAAAGGA+CGG | - | chr1_4:66781157-66781176 | None:intergenic | 30.0% | |
| ACTTACTATTCATTCATCGT+TGG | + | chr1_4:66781245-66781264 | Msa0179270:intron | 30.0% | |
| CTTACTATTCATTCATCGTT+GGG | + | chr1_4:66781246-66781265 | Msa0179270:intron | 30.0% | |
| TAAGAGTTGCCAGTTATTTA+TGG | - | chr1_4:66781375-66781394 | None:intergenic | 30.0% | |
| AATTAAGATTGCAAAGAAGC+CGG | + | chr1_4:66781598-66781617 | Msa0179270:CDS | 30.0% | |
| AACTCTAATATGGCCAATTA+TGG | - | chr1_4:66781732-66781751 | None:intergenic | 30.0% | |
| GAATGAGAGAAACTCTAATA+TGG | - | chr1_4:66781742-66781761 | None:intergenic | 30.0% | |
| CACTTATTCGATACATATAC+AGG | + | chr1_4:66781789-66781808 | Msa0179270:intron | 30.0% | |
| ! | ATGCTCAAAGATCATGTTTT+CGG | - | chr1_4:66781881-66781900 | None:intergenic | 30.0% |
| TTTGCTTCTCAAATTTGAAG+TGG | + | chr1_4:66781940-66781959 | Msa0179270:three_prime_UTR | 30.0% | |
| ! | TTGCTTCTCAAATTTGAAGT+GGG | + | chr1_4:66781941-66781960 | Msa0179270:three_prime_UTR | 30.0% |
| TATTCAGATGCAGATGTAAA+TGG | - | chr1_4:66782027-66782046 | None:intergenic | 30.0% | |
| TGATAGGTAGTTTGGGAATT+GGG | - | chr1_4:66777397-66777416 | None:intergenic | 35.0% | |
| TAATAAATGGCGTACGAGTT+CGG | - | chr1_4:66777422-66777441 | None:intergenic | 35.0% | |
| AACCATTGCTAAAGATGTCA+CGG | + | chr1_4:66777557-66777576 | Msa0179270:CDS | 35.0% | |
| ACATGGTTGAGATATACTAG+TGG | - | chr1_4:66777741-66777760 | None:intergenic | 35.0% | |
| AGTATATCTCAACCATGTTG+TGG | + | chr1_4:66777743-66777762 | Msa0179270:CDS | 35.0% | |
| ! | TAGCGATACAAAGAAGGTAT+GGG | - | chr1_4:66777820-66777839 | None:intergenic | 35.0% |
| TTAGCGATACAAAGAAGGTA+TGG | - | chr1_4:66777821-66777840 | None:intergenic | 35.0% | |
| CTGACAGATAGATTTAGCTA+CGG | - | chr1_4:66777907-66777926 | None:intergenic | 35.0% | |
| ATCTATCTGTCAGTGTCAAA+CGG | + | chr1_4:66777914-66777933 | Msa0179270:intron | 35.0% | |
| ! | ATTAACTACGTTTTGTCCGT+AGG | - | chr1_4:66777966-66777985 | None:intergenic | 35.0% |
| !!! | TTTTCGTGAGTATCGAGTAT+TGG | - | chr1_4:66778284-66778303 | None:intergenic | 35.0% |
| ! | ATTTTACCAGCTCATTGTCA+GGG | - | chr1_4:66778414-66778433 | None:intergenic | 35.0% |
| ! | TATTTTACCAGCTCATTGTC+AGG | - | chr1_4:66778415-66778434 | None:intergenic | 35.0% |
| TCAACAAGATCAATGATGTG+TGG | + | chr1_4:66778465-66778484 | Msa0179270:intron | 35.0% | |
| CAGAAAATCTAGAGAATCGT+AGG | - | chr1_4:66779064-66779083 | None:intergenic | 35.0% | |
| !! | AGTTTTCAGGGATTTCACTT+TGG | + | chr1_4:66779340-66779359 | Msa0179270:intron | 35.0% |
| TCTTTCATTTGATGCAGGAT+AGG | + | chr1_4:66779438-66779457 | Msa0179270:intron | 35.0% | |
| GAAGGAAAACTAACTTCTTG+CGG | - | chr1_4:66779507-66779526 | None:intergenic | 35.0% | |
| TGGTCAAAAGAGTAAGTAGA+AGG | - | chr1_4:66779579-66779598 | None:intergenic | 35.0% | |
| !!! | TTACTTAGGTTGGTTTTGTG+TGG | + | chr1_4:66779674-66779693 | Msa0179270:intron | 35.0% |
| TGCTGAAGAATGTAAGCATT+GGG | - | chr1_4:66779988-66780007 | None:intergenic | 35.0% | |
| TTGCTGAAGAATGTAAGCAT+TGG | - | chr1_4:66779989-66780008 | None:intergenic | 35.0% | |
| TTGACACAACTAACACCTTT+GGG | - | chr1_4:66780029-66780048 | None:intergenic | 35.0% | |
| ATTGACACAACTAACACCTT+TGG | - | chr1_4:66780030-66780049 | None:intergenic | 35.0% | |
| ATAGTGAACCTAAAAGTAGG+CGG | - | chr1_4:66780107-66780126 | None:intergenic | 35.0% | |
| TAGGTTCACTATGAAACTAC+TGG | + | chr1_4:66780115-66780134 | Msa0179270:intron | 35.0% | |
| AGAGCAAAACCCTGATATTA+AGG | + | chr1_4:66780234-66780253 | Msa0179270:CDS | 35.0% | |
| ! | TTTTCCTTAGCTATATGGTG+TGG | + | chr1_4:66780372-66780391 | Msa0179270:intron | 35.0% |
| GATAAGAAAGAAAACTCACC+AGG | - | chr1_4:66780433-66780452 | None:intergenic | 35.0% | |
| ! | CTTTTCCTCAATGTGCATTA+GGG | - | chr1_4:66780501-66780520 | None:intergenic | 35.0% |
| ! | ACTTTTCCTCAATGTGCATT+AGG | - | chr1_4:66780502-66780521 | None:intergenic | 35.0% |
| ! | AAAGTATCACCTTCACCATT+CGG | + | chr1_4:66780517-66780536 | Msa0179270:intron | 35.0% |
| GTATTTGCACATTTGATCCA+TGG | - | chr1_4:66780581-66780600 | None:intergenic | 35.0% | |
| ACTAGTGCATATAATCATCG+AGG | - | chr1_4:66780622-66780641 | None:intergenic | 35.0% | |
| ! | CAAGTCAATACCATTTTCCT+TGG | + | chr1_4:66780732-66780751 | Msa0179270:intron | 35.0% |
| !!! | CAATACCGTTTTGATTTCCA+AGG | - | chr1_4:66780752-66780771 | None:intergenic | 35.0% |
| AAATATCATGCGTTTGTCAG+GGG | - | chr1_4:66780924-66780943 | None:intergenic | 35.0% | |
| GAAAATATCATGCGTTTGTC+AGG | - | chr1_4:66780926-66780945 | None:intergenic | 35.0% | |
| CAATACCTTGGATCTTATGA+GGG | - | chr1_4:66780960-66780979 | None:intergenic | 35.0% | |
| CAAAAGATTCATGCCTTACT+TGG | - | chr1_4:66781035-66781054 | None:intergenic | 35.0% | |
| ! | AAAAAATGTAGCCGTCCTTT+TGG | + | chr1_4:66781143-66781162 | Msa0179270:intron | 35.0% |
| CGCTATAGTCCATAAATAAC+TGG | + | chr1_4:66781363-66781382 | Msa0179270:intron | 35.0% | |
| TGCATTAAAAGAAGGTTTGC+TGG | + | chr1_4:66781450-66781469 | Msa0179270:CDS | 35.0% | |
| ! | ATCAGTTTTCCAGCATTTTC+CGG | - | chr1_4:66781620-66781639 | None:intergenic | 35.0% |
| ATATCAACTGAATCATGTGC+TGG | + | chr1_4:66781703-66781722 | Msa0179270:intron | 35.0% | |
| ! | TTCTCAAATTTGAAGTGGGA+TGG | + | chr1_4:66781945-66781964 | Msa0179270:three_prime_UTR | 35.0% |
| ! | TCTCAAATTTGAAGTGGGAT+GGG | + | chr1_4:66781946-66781965 | Msa0179270:three_prime_UTR | 35.0% |
| CTCATGTTACAGTTTGTGTT+TGG | + | chr1_4:66781984-66782003 | Msa0179270:three_prime_UTR | 35.0% | |
| GTGATAGGTAGTTTGGGAAT+TGG | - | chr1_4:66777398-66777417 | None:intergenic | 40.0% | |
| ! | TTCGGTGTGATAGGTAGTTT+GGG | - | chr1_4:66777404-66777423 | None:intergenic | 40.0% |
| TTCCGTGACATCTTTAGCAA+TGG | - | chr1_4:66777562-66777581 | None:intergenic | 40.0% | |
| TCAACCATGTTGTGGATCAT+GGG | + | chr1_4:66777751-66777770 | Msa0179270:intron | 40.0% | |
| AGCCAAAATCCGTCACTATA+GGG | + | chr1_4:66777874-66777893 | Msa0179270:intron | 40.0% | |
| GGAAATTTGCCCTATAGTGA+CGG | - | chr1_4:66777886-66777905 | None:intergenic | 40.0% | |
| ! | GTTTTGTCCGTAGGTAAAAG+TGG | - | chr1_4:66777957-66777976 | None:intergenic | 40.0% |
| TTGACTTCTACCTACGGTTT+CGG | + | chr1_4:66778013-66778032 | Msa0179270:intron | 40.0% | |
| !! | TGAGTATCGAGTATTGGCTT+GGG | - | chr1_4:66778278-66778297 | None:intergenic | 40.0% |
| TGATGATATGTTACACCGAG+CGG | + | chr1_4:66778498-66778517 | Msa0179270:intron | 40.0% | |
| !! | TCCTTTCTGAAACCTCTTTG+CGG | - | chr1_4:66778564-66778583 | None:intergenic | 40.0% |
| TGGTTGTGTTGCACAAATTG+CGG | + | chr1_4:66778784-66778803 | Msa0179270:CDS | 40.0% | |
| GATCATTGCAATAGGCATCA+TGG | + | chr1_4:66779173-66779192 | Msa0179270:intron | 40.0% | |
| AAAACATTAAGGTCCCACGT+AGG | - | chr1_4:66779402-66779421 | None:intergenic | 40.0% | |
| CTTAATGCGGCTACTAAAGT+TGG | - | chr1_4:66779599-66779618 | None:intergenic | 40.0% | |
| ATACCAGTGTTTCCACTAGT+AGG | - | chr1_4:66779787-66779806 | None:intergenic | 40.0% | |
| ACTAGTGGAAACACTGGTAT+TGG | + | chr1_4:66779787-66779806 | Msa0179270:CDS | 40.0% | |
| !! | TGGAAACACTGGTATTGGTT+TGG | + | chr1_4:66779792-66779811 | Msa0179270:CDS | 40.0% |
| !! | TGGTATTGGTTTGGCATTCA+TGG | + | chr1_4:66779801-66779820 | Msa0179270:CDS | 40.0% |
| TGGATCAGTGAGAACTAACT+CGG | - | chr1_4:66779911-66779930 | None:intergenic | 40.0% | |
| ! | GATCCAGCTAAAGGTATGAA+AGG | + | chr1_4:66779925-66779944 | Msa0179270:CDS | 40.0% |
| TGAAAATCCTGCAAACCCAA+AGG | + | chr1_4:66780011-66780030 | Msa0179270:CDS | 40.0% | |
| !! | ATTCTCTTCCGCCTACTTTT+AGG | + | chr1_4:66780096-66780115 | Msa0179270:intron | 40.0% |
| !! | AAAGTTGATGCCCTTGTTTC+TGG | + | chr1_4:66780166-66780185 | Msa0179270:CDS | 40.0% |
| GGTTCCTATACCAGAAACAA+GGG | - | chr1_4:66780179-66780198 | None:intergenic | 40.0% | |
| !! | CTTGTTTCTGGTATAGGAAC+CGG | + | chr1_4:66780178-66780197 | Msa0179270:CDS | 40.0% |
| GACAATACTGGACTTTCAAG+TGG | - | chr1_4:66780400-66780419 | None:intergenic | 40.0% | |
| CTTGAAAGTCCAGTATTGTC+TGG | + | chr1_4:66780400-66780419 | Msa0179270:CDS | 40.0% | |
| AAAGTCCAGTATTGTCTGGA+GGG | + | chr1_4:66780404-66780423 | Msa0179270:CDS | 40.0% | |
| AAGTTCCCTAATGCACATTG+AGG | + | chr1_4:66780493-66780512 | Msa0179270:intron | 40.0% | |
| AAGTATCACCTTCACCATTC+GGG | + | chr1_4:66780518-66780537 | Msa0179270:intron | 40.0% | |
| TGACAGTTTATTTGCCTCCA+TGG | + | chr1_4:66780561-66780580 | Msa0179270:intron | 40.0% | |
| TTTGCACATTTGATCCATGG+AGG | - | chr1_4:66780578-66780597 | None:intergenic | 40.0% | |
| GGGGAATGATACATAGAAGA+GGG | - | chr1_4:66780905-66780924 | None:intergenic | 40.0% | |
| AGGGGAATGATACATAGAAG+AGG | - | chr1_4:66780906-66780925 | None:intergenic | 40.0% | |
| CCAATACCTTGGATCTTATG+AGG | - | chr1_4:66780961-66780980 | None:intergenic | 40.0% | |
| CCTCATAAGATCCAAGGTAT+TGG | + | chr1_4:66780958-66780977 | Msa0179270:CDS | 40.0% | |
| AAATCAACATCCAGAACACC+AGG | - | chr1_4:66780997-66781016 | None:intergenic | 40.0% | |
| !!! | GTCTTTTTTCCCTCTCTTCT+TGG | + | chr1_4:66781196-66781215 | Msa0179270:intron | 40.0% |
| GTGCGTGAATTTGCATAATG+TGG | - | chr1_4:66781227-66781246 | None:intergenic | 40.0% | |
| TCATTCATCGTTGGGAAAGA+TGG | + | chr1_4:66781254-66781273 | Msa0179270:intron | 40.0% | |
| AGTTTCAATAGCTTCTTCGC+TGG | - | chr1_4:66781419-66781438 | None:intergenic | 40.0% | |
| TACCACTGAACTTGTGTTTC+AGG | + | chr1_4:66781541-66781560 | Msa0179270:intron | 40.0% | |
| ! | ACTGAACTTGTGTTTCAGGT+GGG | + | chr1_4:66781545-66781564 | Msa0179270:intron | 40.0% |
| AATCTTAATTGCAGCTGCTG+CGG | - | chr1_4:66781588-66781607 | None:intergenic | 40.0% | |
| GTAACATGAGATGCTACCAT+TGG | - | chr1_4:66781974-66781993 | None:intergenic | 40.0% | |
| !! | GTTCGGTGTGATAGGTAGTT+TGG | - | chr1_4:66777405-66777424 | None:intergenic | 45.0% |
| CTCAACCATGTTGTGGATCA+TGG | + | chr1_4:66777750-66777769 | Msa0179270:intron | 45.0% | |
| CAGCCAAAATCCGTCACTAT+AGG | + | chr1_4:66777873-66777892 | Msa0179270:intron | 45.0% | |
| !!! | TGCCCTATAGTGACGGATTT+TGG | - | chr1_4:66777879-66777898 | None:intergenic | 45.0% |
| TTAGTGACATCCGAAACCGT+AGG | - | chr1_4:66778026-66778045 | None:intergenic | 45.0% | |
| !! | GTGAGTATCGAGTATTGGCT+TGG | - | chr1_4:66778279-66778298 | None:intergenic | 45.0% |
| ! | CATTGTCAGGGCTTGATAAC+TGG | - | chr1_4:66778402-66778421 | None:intergenic | 45.0% |
| GATGATATGTTACACCGAGC+GGG | + | chr1_4:66778499-66778518 | Msa0179270:intron | 45.0% | |
| TGACTTGAATATCTCCCGCT+CGG | - | chr1_4:66778516-66778535 | None:intergenic | 45.0% | |
| TTCGAACATTCACCGCAAAG+AGG | + | chr1_4:66778549-66778568 | Msa0179270:intron | 45.0% | |
| ACCGCAAAGAGGTTTCAGAA+AGG | + | chr1_4:66778560-66778579 | Msa0179270:intron | 45.0% | |
| ! | TTGCGGTCAAAATTTTGCCC+AGG | + | chr1_4:66778726-66778745 | Msa0179270:intron | 45.0% |
| ! | CCAGGAATTTTATCGAGCCT+GGG | - | chr1_4:66778746-66778765 | None:intergenic | 45.0% |
| AACACAACCATCCACAACAG+TGG | - | chr1_4:66778774-66778793 | None:intergenic | 45.0% | |
| TGCGGCAAAGCTAGAAATGA+TGG | + | chr1_4:66778802-66778821 | Msa0179270:CDS | 45.0% | |
| CTGTCTTTGACACTAGAGCA+AGG | - | chr1_4:66778830-66778849 | None:intergenic | 45.0% | |
| CTTGCTCTAGTGTCAAAGAC+AGG | + | chr1_4:66778828-66778847 | Msa0179270:CDS | 45.0% | |
| ACCAACCAAACTACCTACGT+GGG | + | chr1_4:66779386-66779405 | Msa0179270:intron | 45.0% | |
| TAGCATGATTGCAGATGCTG+AGG | + | chr1_4:66779464-66779483 | Msa0179270:CDS | 45.0% | |
| ATTGCAGATGCTGAGGAGAA+AGG | + | chr1_4:66779471-66779490 | Msa0179270:CDS | 45.0% | |
| TTCCACTAGTAGGCTCAATG+AGG | - | chr1_4:66779777-66779796 | None:intergenic | 45.0% | |
| AAGACTCATTGAAGCAGGCA+TGG | - | chr1_4:66779857-66779876 | None:intergenic | 45.0% | |
| CTCTCAAGACTCATTGAAGC+AGG | - | chr1_4:66779862-66779881 | None:intergenic | 45.0% | |
| ! | AGAACCATTCTTCGCGCTTT+TGG | + | chr1_4:66779883-66779902 | Msa0179270:CDS | 45.0% |
| GTTCTCACTGATCCAGCTAA+AGG | + | chr1_4:66779916-66779935 | Msa0179270:CDS | 45.0% | |
| GCTCCTTTCATACCTTTAGC+TGG | - | chr1_4:66779931-66779950 | None:intergenic | 45.0% | |
| AGCTGTTCAGAAAGCTGAAG+AGG | + | chr1_4:66779948-66779967 | Msa0179270:CDS | 45.0% | |
| ! | ACTAACACCTTTGGGTTTGC+AGG | - | chr1_4:66780021-66780040 | None:intergenic | 45.0% |
| AAACTACTGGACCAGAGATC+TGG | + | chr1_4:66780128-66780147 | Msa0179270:CDS | 45.0% | |
| ! | AGATCTGGAAAAGCTCTGGT+GGG | + | chr1_4:66780143-66780162 | Msa0179270:CDS | 45.0% |
| !! | GATGCCCTTGTTTCTGGTAT+AGG | + | chr1_4:66780172-66780191 | Msa0179270:CDS | 45.0% |
| CGGTTCCTATACCAGAAACA+AGG | - | chr1_4:66780180-66780199 | None:intergenic | 45.0% | |
| GGTTCCACACCATATAGCTA+AGG | - | chr1_4:66780379-66780398 | None:intergenic | 45.0% | |
| GAAAGTCCAGTATTGTCTGG+AGG | + | chr1_4:66780403-66780422 | Msa0179270:CDS | 45.0% | |
| AGTATCACCTTCACCATTCG+GGG | + | chr1_4:66780519-66780538 | Msa0179270:intron | 45.0% | |
| CATGGATTCTGATCTCTCTG+TGG | + | chr1_4:66780677-66780696 | Msa0179270:intron | 45.0% | |
| ! | TCTTATGAGGGCCTTGTACA+TGG | - | chr1_4:66780948-66780967 | None:intergenic | 45.0% |
| !! | AAGATCCAAGGTATTGGTGC+TGG | + | chr1_4:66780964-66780983 | Msa0179270:CDS | 45.0% |
| CACCTGAAACACAAGTTCAG+TGG | - | chr1_4:66781546-66781565 | None:intergenic | 45.0% | |
| CACTGAACTTGTGTTTCAGG+TGG | + | chr1_4:66781544-66781563 | Msa0179270:intron | 45.0% | |
| ! | CTGAACTTGTGTTTCAGGTG+GGG | + | chr1_4:66781546-66781565 | Msa0179270:intron | 45.0% |
| ! | TTTCAGGTGGGGATATCATC+TGG | + | chr1_4:66781557-66781576 | Msa0179270:intron | 45.0% |
| CATGTGCTGGAGTCCATAAT+TGG | + | chr1_4:66781716-66781735 | Msa0179270:intron | 45.0% | |
| AGATAACGCTCTCCAAAGCT+CGG | - | chr1_4:66781823-66781842 | None:intergenic | 45.0% | |
| !!! | TGTTTTTTTTTTTTTTTTTT+TGG | + | chr1_4:66779284-66779303 | Msa0179270:intron | 5.0% |
| !!! | GTTTTTTTTTTTTTTTTTTT+GGG | + | chr1_4:66779285-66779304 | Msa0179270:intron | 5.0% |
| !!! | TTTTTTATATAAAAATATGA+TGG | + | chr1_4:66781083-66781102 | Msa0179270:intron | 5.0% |
| GGGACAGAGACAAAGGACAA+AGG | - | chr1_4:66777377-66777396 | None:intergenic | 50.0% | |
| GGGAATTGGGACAGAGACAA+AGG | - | chr1_4:66777384-66777403 | None:intergenic | 50.0% | |
| AACGCCCATGATCCACAACA+TGG | - | chr1_4:66777758-66777777 | None:intergenic | 50.0% | |
| ! | TCATGGGCGTTTTTACCACC+CGG | + | chr1_4:66777767-66777786 | Msa0179270:intron | 50.0% |
| ! | AAGAAGGTATGGGTTGAGCC+CGG | - | chr1_4:66777810-66777829 | None:intergenic | 50.0% |
| !! | CGAGTATTGGCTTGGGTGAA+TGG | - | chr1_4:66778271-66778290 | None:intergenic | 50.0% |
| ! | TGTCAGGGCTTGATAACTGG+TGG | - | chr1_4:66778399-66778418 | None:intergenic | 50.0% |
| ATCAAGCCCTGACAATGAGC+TGG | + | chr1_4:66778405-66778424 | Msa0179270:intron | 50.0% | |
| CCCAGGCTCGATAAAATTCC+TGG | + | chr1_4:66778743-66778762 | Msa0179270:intron | 50.0% | |
| ! | GCCAGGAATTTTATCGAGCC+TGG | - | chr1_4:66778747-66778766 | None:intergenic | 50.0% |
| ! | GTTGGTGAGCTAACAGACAC+TGG | - | chr1_4:66779372-66779391 | None:intergenic | 50.0% |
| CACCAACCAAACTACCTACG+TGG | + | chr1_4:66779385-66779404 | Msa0179270:intron | 50.0% | |
| TCCCACGTAGGTAGTTTGGT+TGG | - | chr1_4:66779390-66779409 | None:intergenic | 50.0% | |
| AAGGTCCCACGTAGGTAGTT+TGG | - | chr1_4:66779394-66779413 | None:intergenic | 50.0% | |
| GTCCTCATTGAGCCTACTAG+TGG | + | chr1_4:66779772-66779791 | Msa0179270:CDS | 50.0% | |
| GAGCCTACTAGTGGAAACAC+TGG | + | chr1_4:66779781-66779800 | Msa0179270:CDS | 50.0% | |
| GCATTCATGGCAGCTGCTAA+GGG | + | chr1_4:66779814-66779833 | Msa0179270:CDS | 50.0% | |
| GTAGGCGGAAGAGAATGAGT+TGG | - | chr1_4:66780092-66780111 | None:intergenic | 50.0% | |
| ! | CCAGAGCTTTTCCAGATCTC+TGG | - | chr1_4:66780142-66780161 | None:intergenic | 50.0% |
| CCAGAGATCTGGAAAAGCTC+TGG | + | chr1_4:66780139-66780158 | Msa0179270:CDS | 50.0% | |
| ! | GAGATCTGGAAAAGCTCTGG+TGG | + | chr1_4:66780142-66780161 | Msa0179270:CDS | 50.0% |
| !! | GTTTCTGGTATAGGAACCGG+AGG | + | chr1_4:66780181-66780200 | Msa0179270:CDS | 50.0% |
| TGGTATAGGAACCGGAGGTA+CGG | + | chr1_4:66780186-66780205 | Msa0179270:CDS | 50.0% | |
| GGTTTCCCTCCAGACAATAC+TGG | - | chr1_4:66780412-66780431 | None:intergenic | 50.0% | |
| GTATTGTCTGGAGGGAAACC+TGG | + | chr1_4:66780412-66780431 | Msa0179270:CDS | 50.0% | |
| AATGACTCCCCGAATGGTGA+AGG | - | chr1_4:66780529-66780548 | None:intergenic | 50.0% | |
| GACATGAATGACTCCCCGAA+TGG | - | chr1_4:66780535-66780554 | None:intergenic | 50.0% | |
| CAAGGCCCTCATAAGATCCA+AGG | + | chr1_4:66780952-66780971 | Msa0179270:intron | 50.0% | |
| TGAAGCCAGCACCAATACCT+TGG | - | chr1_4:66780972-66780991 | None:intergenic | 50.0% | |
| !! | ATTGGTGCTGGCTTCATTCC+TGG | + | chr1_4:66780976-66780995 | Msa0179270:CDS | 50.0% |
| TGGCTTCATTCCTGGTGTTC+TGG | + | chr1_4:66780984-66781003 | Msa0179270:CDS | 50.0% | |
| GCAAAGAAGCCGGAAAATGC+TGG | + | chr1_4:66781608-66781627 | Msa0179270:CDS | 50.0% | |
| !! | CAGGTTGTTTTCCCGAGCTT+TGG | + | chr1_4:66781808-66781827 | Msa0179270:intron | 50.0% |
| GATAACGCTCTCCAAAGCTC+GGG | - | chr1_4:66781822-66781841 | None:intergenic | 50.0% | |
| !! | GCGTACGAGTTCGGTGTGAT+AGG | - | chr1_4:66777413-66777432 | None:intergenic | 55.0% |
| !! | TTTTTACCACCCGGCTAGCC+CGG | + | chr1_4:66777776-66777795 | Msa0179270:intron | 55.0% |
| ! | AGAAGGTATGGGTTGAGCCC+GGG | - | chr1_4:66777809-66777828 | None:intergenic | 55.0% |
| GGCATTCATGGCAGCTGCTA+AGG | + | chr1_4:66779813-66779832 | Msa0179270:CDS | 55.0% | |
| ! | GGCACCAAAAGCGCGAAGAA+TGG | - | chr1_4:66779890-66779909 | None:intergenic | 55.0% |
| AGCACCTGTTACCGTACCTC+CGG | - | chr1_4:66780200-66780219 | None:intergenic | 55.0% | |
| GTGGCGTCACCAAGAAGAGA+GGG | - | chr1_4:66781208-66781227 | None:intergenic | 55.0% | |
| TGTGGCGTCACCAAGAAGAG+AGG | - | chr1_4:66781209-66781228 | None:intergenic | 55.0% | |
| TGAAGTGGGATGGGAGCCAA+TGG | + | chr1_4:66781955-66781974 | Msa0179270:three_prime_UTR | 55.0% | |
| !! | TTTTACCACCCGGCTAGCCC+GGG | + | chr1_4:66777777-66777796 | Msa0179270:intron | 60.0% |
| TCCTGGCTTCGCCACTGTTG+TGG | + | chr1_4:66778760-66778779 | Msa0179270:intron | 60.0% | |
| TCCACAACAGTGGCGAAGCC+AGG | - | chr1_4:66778764-66778783 | None:intergenic | 60.0% | |
| GGCTTCGCCACTGTTGTGGA+TGG | + | chr1_4:66778764-66778783 | Msa0179270:intron | 60.0% | |
| ! | GGAACCGGAGGTACGGTAAC+AGG | + | chr1_4:66780193-66780212 | Msa0179270:CDS | 60.0% |
| ! | GGAGGTACGGTAACAGGTGC+TGG | + | chr1_4:66780199-66780218 | Msa0179270:CDS | 60.0% |
| TTGAGCCCGGGCGTATGCCC+GGG | - | chr1_4:66777797-66777816 | None:intergenic | 70.0% | |
| GTTGAGCCCGGGCGTATGCC+CGG | - | chr1_4:66777798-66777817 | None:intergenic | 70.0% | |
| !! | GTATGCCCGGGCTAGCCGGG+TGG | - | chr1_4:66777785-66777804 | None:intergenic | 75.0% |
| !! | GGCGTATGCCCGGGCTAGCC+GGG | - | chr1_4:66777788-66777807 | None:intergenic | 75.0% |
| !! | GGGCGTATGCCCGGGCTAGC+CGG | - | chr1_4:66777789-66777808 | None:intergenic | 75.0% |
| ! | GGCTAGCCCGGGCATACGCC+CGG | + | chr1_4:66777788-66777807 | Msa0179270:intron | 75.0% |
| GCTAGCCCGGGCATACGCCC+GGG | + | chr1_4:66777789-66777808 | Msa0179270:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66777361 | 66782137 | 66777361 | ID=Msa0179270;Name=Msa0179270 |
| chr1_4 | mRNA | 66777361 | 66782137 | 66777361 | ID=Msa0179270-mRNA-1;Parent=Msa0179270;Name=Msa0179270-mRNA-1;_AED=0.37;_eAED=0.37;_QI=82|1|1|1|0.72|0.66|12|234|326 |
| chr1_4 | exon | 66777361 | 66777426 | 66777361 | ID=Msa0179270-mRNA-1:exon:21941;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66777524 | 66777581 | 66777524 | ID=Msa0179270-mRNA-1:exon:21942;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66777723 | 66777765 | 66777723 | ID=Msa0179270-mRNA-1:exon:21943;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66778780 | 66778849 | 66778780 | ID=Msa0179270-mRNA-1:exon:21944;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66779455 | 66779512 | 66779455 | ID=Msa0179270-mRNA-1:exon:21945;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66779769 | 66780032 | 66779769 | ID=Msa0179270-mRNA-1:exon:21946;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66780118 | 66780255 | 66780118 | ID=Msa0179270-mRNA-1:exon:21947;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66780382 | 66780433 | 66780382 | ID=Msa0179270-mRNA-1:exon:21948;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66780956 | 66781035 | 66780956 | ID=Msa0179270-mRNA-1:exon:21949;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66781412 | 66781471 | 66781412 | ID=Msa0179270-mRNA-1:exon:21950;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66781563 | 66781643 | 66781563 | ID=Msa0179270-mRNA-1:exon:21951;Parent=Msa0179270-mRNA-1 |
| chr1_4 | exon | 66781811 | 66782137 | 66781811 | ID=Msa0179270-mRNA-1:exon:21952;Parent=Msa0179270-mRNA-1 |
| chr1_4 | five_prime_UTR | 66777361 | 66777426 | 66777361 | ID=Msa0179270-mRNA-1:five_prime_utr;Parent=Msa0179270-mRNA-1 |
| chr1_4 | five_prime_UTR | 66777524 | 66777539 | 66777524 | ID=Msa0179270-mRNA-1:five_prime_utr;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66777540 | 66777581 | 66777540 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66777723 | 66777765 | 66777723 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66778780 | 66778849 | 66778780 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66779455 | 66779512 | 66779455 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66779769 | 66780032 | 66779769 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66780118 | 66780255 | 66780118 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66780382 | 66780433 | 66780382 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66780956 | 66781035 | 66780956 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66781412 | 66781471 | 66781412 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66781563 | 66781643 | 66781563 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | CDS | 66781811 | 66781903 | 66781811 | ID=Msa0179270-mRNA-1:cds;Parent=Msa0179270-mRNA-1 |
| chr1_4 | three_prime_UTR | 66781904 | 66782137 | 66781904 | ID=Msa0179270-mRNA-1:three_prime_utr;Parent=Msa0179270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
