Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460760 | XP_024627814.1 | 77.907 | 258 | 37 | 2 | 23 | 280 | 1 | 238 | 1.69e-137 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460760 | A0A396GR48 | 77.907 | 258 | 37 | 2 | 23 | 280 | 1 | 238 | 8.08e-138 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035020 | Msa1460760 | 0.800643 | 1.309067e-48 | -8.615850e-47 |
| Msa1430140 | Msa1460760 | 0.993250 | 1.879308e-198 | -8.615850e-47 |
| Msa1069190 | Msa1460760 | 0.805257 | 1.456397e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460760 | MtrunA17_Chr8g0390051 | 77.907 | 258 | 37 | 2 | 23 | 280 | 1 | 238 | 1.56e-141 | 397 |
| Msa1460760 | MtrunA17_Chr8g0390061 | 61.538 | 247 | 54 | 4 | 23 | 269 | 1 | 206 | 9.11e-97 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAAAGTAACCGCTATAT+TGG | 0.190336 | tig0041068:-9666 | Msa1460760:CDS |
| TCAAGAAATGTTTATACTTC+AGG | 0.257939 | tig0041068:-8441 | Msa1460760:CDS |
| TAATGATGTTGAAATGAATT+TGG | 0.258979 | tig0041068:-8544 | Msa1460760:CDS |
| ACTACTCATGTTTATACTTC+AGG | 0.281761 | tig0041068:-8471 | Msa1460760:CDS |
| ATAAAAGTAACCGCTATATT+GGG | 0.285286 | tig0041068:-9665 | Msa1460760:CDS |
| ATTGAAGTTGATAATAGTTT+TGG | 0.297080 | tig0041068:-9108 | Msa1460760:CDS |
| AAGAGTGATGACAAAGAAAA+AGG | 0.308555 | tig0041068:-8897 | Msa1460760:CDS |
| CAAAGCTTTCATGATGAAAA+TGG | 0.312117 | tig0041068:-8693 | Msa1460760:CDS |
| GTTTCCCTTCTCTTTAATTC+CGG | 0.323029 | tig0041068:+8779 | None:intergenic |
| GAAATGGAGTATGAATCTTT+TGG | 0.345782 | tig0041068:-9170 | Msa1460760:CDS |
| TCTTGTATTAATTTCTTCAT+CGG | 0.409976 | tig0041068:+8497 | None:intergenic |
| TTGAACCATATGCAGAGAAA+TGG | 0.442521 | tig0041068:-9186 | Msa1460760:intron |
| ACCAAGCTTGTTGTAGGAAG+TGG | 0.446868 | tig0041068:-9023 | Msa1460760:CDS |
| AAAAGGATCTAACATAAAAC+AGG | 0.452318 | tig0041068:-9132 | Msa1460760:CDS |
| CTTCCTACAACAAGCTTGGT+TGG | 0.453707 | tig0041068:+9026 | None:intergenic |
| GACAAGGATGTTGAAGAAAC+CGG | 0.472516 | tig0041068:-8798 | Msa1460760:CDS |
| AATGTTTATAAAGTCACATA+TGG | 0.478201 | tig0041068:-8573 | Msa1460760:CDS |
| AGTCCAACCAAGCTTGTTGT+AGG | 0.489137 | tig0041068:-9029 | Msa1460760:CDS |
| GAAATCAAAATTCTCATTGA+AGG | 0.492366 | tig0041068:-8826 | Msa1460760:CDS |
| GGAAGGTACCAAAAGCCAAA+AGG | 0.513006 | tig0041068:-9149 | Msa1460760:CDS |
| TCCACTTCCTACAACAAGCT+TGG | 0.517256 | tig0041068:+9022 | None:intergenic |
| GATGTTGAAATGAATTTGGA+GGG | 0.522379 | tig0041068:-8540 | Msa1460760:CDS |
| AAAATTCTCATTGAAGGAGA+AGG | 0.537516 | tig0041068:-8820 | Msa1460760:CDS |
| TCAGGAAAGGTAGATTCTGT+TGG | 0.537763 | tig0041068:-8939 | Msa1460760:CDS |
| CTGCAAAATGATATGCATGT+TGG | 0.552120 | tig0041068:-8858 | Msa1460760:CDS |
| GTTTGCAATCAAGAAATAAG+TGG | 0.553693 | tig0041068:-8419 | Msa1460760:CDS |
| GAAACCGGAATTAAAGAGAA+GGG | 0.561260 | tig0041068:-8783 | Msa1460760:CDS |
| TGATGTTGAAATGAATTTGG+AGG | 0.570754 | tig0041068:-8541 | Msa1460760:CDS |
| TACTACTTTGAAAGTACAAG+AGG | 0.579114 | tig0041068:+9629 | None:intergenic |
| AGAAACCGGAATTAAAGAGA+AGG | 0.597087 | tig0041068:-8784 | Msa1460760:CDS |
| CTCATTGAAGGAGAAGGACA+AGG | 0.599240 | tig0041068:-8814 | Msa1460760:CDS |
| TAAAAGTAACCGCTATATTG+GGG | 0.610752 | tig0041068:-9664 | Msa1460760:CDS |
| GAAAGGGATAATGTCGCGAT+CGG | 0.615835 | tig0041068:-8982 | Msa1460760:CDS |
| GTTGAAGTTCCCCAATATAG+CGG | 0.672285 | tig0041068:+9655 | None:intergenic |
| GAGTGGCGCAAATGATGACG+AGG | 0.674631 | tig0041068:-8730 | Msa1460760:CDS |
| ACTACTTTGAAAGTACAAGA+GGG | 0.676276 | tig0041068:+9630 | None:intergenic |
| TGATGACGAGGAAACAAGTG+AGG | 0.692705 | tig0041068:-8718 | Msa1460760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCAATAGAAAAATATAT+TGG | + | tig0041068:8726-8745 | None:intergenic | 10.0% |
| !! | AAATCAATAGAAAAATATAT+TGG | + | tig0041068:8726-8745 | None:intergenic | 10.0% |
| !!! | GTATTTTTTTTCATGATTTT+TGG | - | tig0041068:8478-8497 | Msa1460760:CDS | 15.0% |
| !! | TTATTACAAAGAAAATTCAA+AGG | + | tig0041068:8639-8658 | None:intergenic | 15.0% |
| !!! | GTATTTTTTTTCATGATTTT+TGG | - | tig0041068:8478-8497 | Msa1460760:CDS | 15.0% |
| !! | TTATTACAAAGAAAATTCAA+AGG | + | tig0041068:8639-8658 | None:intergenic | 15.0% |
| !! | AATTCAAAGGAAAAATAAAG+AGG | + | tig0041068:8626-8645 | None:intergenic | 20.0% |
| !!! | ATCATATTTAGGACTATAAA+TGG | - | tig0041068:8700-8719 | Msa1460760:CDS | 20.0% |
| !!! | GCAATTGAAATTTTATTACT+TGG | - | tig0041068:8800-8819 | Msa1460760:CDS | 20.0% |
| !!! | ATTGAAGTTGATAATAGTTT+TGG | - | tig0041068:8979-8998 | Msa1460760:CDS | 20.0% |
| !! | AATGTTTATAAAGTCACATA+TGG | - | tig0041068:9514-9533 | Msa1460760:intron | 20.0% |
| !! | TAATGATGTTGAAATGAATT+TGG | - | tig0041068:9543-9562 | Msa1460760:intron | 20.0% |
| !! | TCTTGTATTAATTTCTTCAT+CGG | + | tig0041068:9593-9612 | None:intergenic | 20.0% |
| !! | AATTCAAAGGAAAAATAAAG+AGG | + | tig0041068:8626-8645 | None:intergenic | 20.0% |
| !!! | ATCATATTTAGGACTATAAA+TGG | - | tig0041068:8700-8719 | Msa1460760:CDS | 20.0% |
| !!! | GCAATTGAAATTTTATTACT+TGG | - | tig0041068:8800-8819 | Msa1460760:CDS | 20.0% |
| !!! | ATTGAAGTTGATAATAGTTT+TGG | - | tig0041068:8979-8998 | Msa1460760:CDS | 20.0% |
| !! | AATGTTTATAAAGTCACATA+TGG | - | tig0041068:9514-9533 | Msa1460760:intron | 20.0% |
| !! | TAATGATGTTGAAATGAATT+TGG | - | tig0041068:9543-9562 | Msa1460760:intron | 20.0% |
| !! | TCTTGTATTAATTTCTTCAT+CGG | + | tig0041068:9593-9612 | None:intergenic | 20.0% |
| ! | ATAAAAGTAACCGCTATATT+GGG | - | tig0041068:8422-8441 | Msa1460760:CDS | 25.0% |
| ! | AGGATCAAATTAATATTTGG+AGG | + | tig0041068:8872-8891 | None:intergenic | 25.0% |
| ! | GCAAGGATCAAATTAATATT+TGG | + | tig0041068:8875-8894 | None:intergenic | 25.0% |
| !! | TGTTTTATGTTAGATCCTTT+TGG | + | tig0041068:8956-8975 | None:intergenic | 25.0% |
| ! | AAAAGGATCTAACATAAAAC+AGG | - | tig0041068:8955-8974 | Msa1460760:CDS | 25.0% |
| ! | GAAATCAAAATTCTCATTGA+AGG | - | tig0041068:9261-9280 | Msa1460760:intron | 25.0% |
| !! | AATGTTTTCTTCAGTAAAGT+CGG | + | tig0041068:9428-9447 | None:intergenic | 25.0% |
| !! | CAACTTTTAGCAAAGTAAAT+TGG | - | tig0041068:9449-9468 | Msa1460760:intron | 25.0% |
| ! | TCAAGAAATGTTTATACTTC+AGG | - | tig0041068:9646-9665 | Msa1460760:CDS | 25.0% |
| ! | ATAAAAGTAACCGCTATATT+GGG | - | tig0041068:8422-8441 | Msa1460760:CDS | 25.0% |
| ! | AGGATCAAATTAATATTTGG+AGG | + | tig0041068:8872-8891 | None:intergenic | 25.0% |
| ! | GCAAGGATCAAATTAATATT+TGG | + | tig0041068:8875-8894 | None:intergenic | 25.0% |
| !! | TGTTTTATGTTAGATCCTTT+TGG | + | tig0041068:8956-8975 | None:intergenic | 25.0% |
| ! | AAAAGGATCTAACATAAAAC+AGG | - | tig0041068:8955-8974 | Msa1460760:CDS | 25.0% |
| ! | GAAATCAAAATTCTCATTGA+AGG | - | tig0041068:9261-9280 | Msa1460760:intron | 25.0% |
| !! | AATGTTTTCTTCAGTAAAGT+CGG | + | tig0041068:9428-9447 | None:intergenic | 25.0% |
| !! | CAACTTTTAGCAAAGTAAAT+TGG | - | tig0041068:9449-9468 | Msa1460760:intron | 25.0% |
| ! | TCAAGAAATGTTTATACTTC+AGG | - | tig0041068:9646-9665 | Msa1460760:CDS | 25.0% |
| CATAAAAGTAACCGCTATAT+TGG | - | tig0041068:8421-8440 | Msa1460760:CDS | 30.0% | |
| TAAAAGTAACCGCTATATTG+GGG | - | tig0041068:8423-8442 | Msa1460760:CDS | 30.0% | |
| ! | ACTACTTTGAAAGTACAAGA+GGG | + | tig0041068:8460-8479 | None:intergenic | 30.0% |
| ! | TACTACTTTGAAAGTACAAG+AGG | + | tig0041068:8461-8480 | None:intergenic | 30.0% |
| GAAAAATAAAGAGGAAGAAC+TGG | + | tig0041068:8617-8636 | None:intergenic | 30.0% | |
| TGTAGTCGAACATCATATTT+AGG | - | tig0041068:8689-8708 | Msa1460760:CDS | 30.0% | |
| ! | GAAATGGAGTATGAATCTTT+TGG | - | tig0041068:8917-8936 | Msa1460760:CDS | 30.0% |
| CACACAGAAACAAAAAACTA+TGG | - | tig0041068:9034-9053 | Msa1460760:CDS | 30.0% | |
| !!! | CTAATTTTTTTGGACGGAAA+GGG | - | tig0041068:9089-9108 | Msa1460760:CDS | 30.0% |
| AAGAGTGATGACAAAGAAAA+AGG | - | tig0041068:9190-9209 | Msa1460760:intron | 30.0% | |
| AAAATTCTCATTGAAGGAGA+AGG | - | tig0041068:9267-9286 | Msa1460760:intron | 30.0% | |
| CAAAGCTTTCATGATGAAAA+TGG | - | tig0041068:9394-9413 | Msa1460760:intron | 30.0% | |
| ! | ATGTTTTCTTCAGTAAAGTC+GGG | + | tig0041068:9427-9446 | None:intergenic | 30.0% |
| TGATGTTGAAATGAATTTGG+AGG | - | tig0041068:9546-9565 | Msa1460760:intron | 30.0% | |
| GATGTTGAAATGAATTTGGA+GGG | - | tig0041068:9547-9566 | Msa1460760:intron | 30.0% | |
| ACTACTCATGTTTATACTTC+AGG | - | tig0041068:9616-9635 | Msa1460760:intron | 30.0% | |
| GTTTGCAATCAAGAAATAAG+TGG | - | tig0041068:9668-9687 | Msa1460760:CDS | 30.0% | |
| CATAAAAGTAACCGCTATAT+TGG | - | tig0041068:8421-8440 | Msa1460760:CDS | 30.0% | |
| TAAAAGTAACCGCTATATTG+GGG | - | tig0041068:8423-8442 | Msa1460760:CDS | 30.0% | |
| ! | ACTACTTTGAAAGTACAAGA+GGG | + | tig0041068:8460-8479 | None:intergenic | 30.0% |
| ! | TACTACTTTGAAAGTACAAG+AGG | + | tig0041068:8461-8480 | None:intergenic | 30.0% |
| GAAAAATAAAGAGGAAGAAC+TGG | + | tig0041068:8617-8636 | None:intergenic | 30.0% | |
| TGTAGTCGAACATCATATTT+AGG | - | tig0041068:8689-8708 | Msa1460760:CDS | 30.0% | |
| ! | GAAATGGAGTATGAATCTTT+TGG | - | tig0041068:8917-8936 | Msa1460760:CDS | 30.0% |
| CACACAGAAACAAAAAACTA+TGG | - | tig0041068:9034-9053 | Msa1460760:CDS | 30.0% | |
| !!! | CTAATTTTTTTGGACGGAAA+GGG | - | tig0041068:9089-9108 | Msa1460760:CDS | 30.0% |
| AAGAGTGATGACAAAGAAAA+AGG | - | tig0041068:9190-9209 | Msa1460760:intron | 30.0% | |
| AAAATTCTCATTGAAGGAGA+AGG | - | tig0041068:9267-9286 | Msa1460760:intron | 30.0% | |
| CAAAGCTTTCATGATGAAAA+TGG | - | tig0041068:9394-9413 | Msa1460760:intron | 30.0% | |
| ! | ATGTTTTCTTCAGTAAAGTC+GGG | + | tig0041068:9427-9446 | None:intergenic | 30.0% |
| TGATGTTGAAATGAATTTGG+AGG | - | tig0041068:9546-9565 | Msa1460760:intron | 30.0% | |
| GATGTTGAAATGAATTTGGA+GGG | - | tig0041068:9547-9566 | Msa1460760:intron | 30.0% | |
| ACTACTCATGTTTATACTTC+AGG | - | tig0041068:9616-9635 | Msa1460760:intron | 30.0% | |
| GTTTGCAATCAAGAAATAAG+TGG | - | tig0041068:9668-9687 | Msa1460760:CDS | 30.0% | |
| !! | TTTGGTCTTTCACTCTTTTG+TGG | + | tig0041068:8522-8541 | None:intergenic | 35.0% |
| TGAAAGACCAAACACAAACA+AGG | - | tig0041068:8530-8549 | Msa1460760:CDS | 35.0% | |
| GAAAGACCAAACACAAACAA+GGG | - | tig0041068:8531-8550 | Msa1460760:CDS | 35.0% | |
| ! | TATTCTCCCTTGTTTGTGTT+TGG | + | tig0041068:8540-8559 | None:intergenic | 35.0% |
| ATATGGTTCAACATCTTGCA+AGG | + | tig0041068:8892-8911 | None:intergenic | 35.0% | |
| TTGAACCATATGCAGAGAAA+TGG | - | tig0041068:8901-8920 | Msa1460760:CDS | 35.0% | |
| ATACTCCATTTCTCTGCATA+TGG | + | tig0041068:8909-8928 | None:intergenic | 35.0% | |
| ! | TGGAGTATGAATCTTTTGGA+AGG | - | tig0041068:8921-8940 | Msa1460760:CDS | 35.0% |
| !!! | TGTTAGATCCTTTTGGCTTT+TGG | + | tig0041068:8949-8968 | None:intergenic | 35.0% |
| !!! | TAGTTTTGGCTATTTGTGTC+TGG | - | tig0041068:8993-9012 | Msa1460760:CDS | 35.0% |
| !!! | GGAAGTGGAGCTAATTTTTT+TGG | - | tig0041068:9079-9098 | Msa1460760:CDS | 35.0% |
| !!! | GTGGAGCTAATTTTTTTGGA+CGG | - | tig0041068:9083-9102 | Msa1460760:CDS | 35.0% |
| !!! | GCTAATTTTTTTGGACGGAA+AGG | - | tig0041068:9088-9107 | Msa1460760:CDS | 35.0% |
| ! | ATCGGATGAAAGAGCTTTTT+CGG | - | tig0041068:9123-9142 | Msa1460760:CDS | 35.0% |
| ! | AAGAAAAAGGAGTACAACTC+AGG | - | tig0041068:9203-9222 | Msa1460760:intron | 35.0% |
| ! | AGAAAAAGGAGTACAACTCA+GGG | - | tig0041068:9204-9223 | Msa1460760:intron | 35.0% |
| CTGCAAAATGATATGCATGT+TGG | - | tig0041068:9229-9248 | Msa1460760:intron | 35.0% | |
| AGAAACCGGAATTAAAGAGA+AGG | - | tig0041068:9303-9322 | Msa1460760:intron | 35.0% | |
| GAAACCGGAATTAAAGAGAA+GGG | - | tig0041068:9304-9323 | Msa1460760:intron | 35.0% | |
| GTTTCCCTTCTCTTTAATTC+CGG | + | tig0041068:9311-9330 | None:intergenic | 35.0% | |
| CAACAAGATGCAGAAAAATG+TGG | - | tig0041068:9330-9349 | Msa1460760:intron | 35.0% | |
| !! | TTTGGTCTTTCACTCTTTTG+TGG | + | tig0041068:8522-8541 | None:intergenic | 35.0% |
| TGAAAGACCAAACACAAACA+AGG | - | tig0041068:8530-8549 | Msa1460760:CDS | 35.0% | |
| GAAAGACCAAACACAAACAA+GGG | - | tig0041068:8531-8550 | Msa1460760:CDS | 35.0% | |
| ! | TATTCTCCCTTGTTTGTGTT+TGG | + | tig0041068:8540-8559 | None:intergenic | 35.0% |
| ATATGGTTCAACATCTTGCA+AGG | + | tig0041068:8892-8911 | None:intergenic | 35.0% | |
| TTGAACCATATGCAGAGAAA+TGG | - | tig0041068:8901-8920 | Msa1460760:CDS | 35.0% | |
| ATACTCCATTTCTCTGCATA+TGG | + | tig0041068:8909-8928 | None:intergenic | 35.0% | |
| ! | TGGAGTATGAATCTTTTGGA+AGG | - | tig0041068:8921-8940 | Msa1460760:CDS | 35.0% |
| !!! | TGTTAGATCCTTTTGGCTTT+TGG | + | tig0041068:8949-8968 | None:intergenic | 35.0% |
| !!! | TAGTTTTGGCTATTTGTGTC+TGG | - | tig0041068:8993-9012 | Msa1460760:CDS | 35.0% |
| !!! | GGAAGTGGAGCTAATTTTTT+TGG | - | tig0041068:9079-9098 | Msa1460760:CDS | 35.0% |
| !!! | GTGGAGCTAATTTTTTTGGA+CGG | - | tig0041068:9083-9102 | Msa1460760:CDS | 35.0% |
| !!! | GCTAATTTTTTTGGACGGAA+AGG | - | tig0041068:9088-9107 | Msa1460760:CDS | 35.0% |
| ! | ATCGGATGAAAGAGCTTTTT+CGG | - | tig0041068:9123-9142 | Msa1460760:CDS | 35.0% |
| ! | AAGAAAAAGGAGTACAACTC+AGG | - | tig0041068:9203-9222 | Msa1460760:intron | 35.0% |
| ! | AGAAAAAGGAGTACAACTCA+GGG | - | tig0041068:9204-9223 | Msa1460760:intron | 35.0% |
| CTGCAAAATGATATGCATGT+TGG | - | tig0041068:9229-9248 | Msa1460760:intron | 35.0% | |
| AGAAACCGGAATTAAAGAGA+AGG | - | tig0041068:9303-9322 | Msa1460760:intron | 35.0% | |
| GAAACCGGAATTAAAGAGAA+GGG | - | tig0041068:9304-9323 | Msa1460760:intron | 35.0% | |
| GTTTCCCTTCTCTTTAATTC+CGG | + | tig0041068:9311-9330 | None:intergenic | 35.0% | |
| CAACAAGATGCAGAAAAATG+TGG | - | tig0041068:9330-9349 | Msa1460760:intron | 35.0% | |
| GTTGAAGTTCCCCAATATAG+CGG | + | tig0041068:8435-8454 | None:intergenic | 40.0% | |
| TGAACACCAAGAACAAGAAG+AGG | - | tig0041068:8561-8580 | Msa1460760:CDS | 40.0% | |
| TTGTCTCCTCTTCTTGTTCT+TGG | + | tig0041068:8570-8589 | None:intergenic | 40.0% | |
| GAACAAGAAGAGGAGACAAA+AGG | - | tig0041068:8571-8590 | Msa1460760:CDS | 40.0% | |
| TCAGGAAAGGTAGATTCTGT+TGG | - | tig0041068:9148-9167 | Msa1460760:CDS | 40.0% | |
| GACAAGGATGTTGAAGAAAC+CGG | - | tig0041068:9289-9308 | Msa1460760:intron | 40.0% | |
| CAAGATGCAGAAAAATGTGG+TGG | - | tig0041068:9333-9352 | Msa1460760:intron | 40.0% | |
| ! | TTTTCTTCAGTAAAGTCGGG+CGG | + | tig0041068:9424-9443 | None:intergenic | 40.0% |
| GTTGAAGTTCCCCAATATAG+CGG | + | tig0041068:8435-8454 | None:intergenic | 40.0% | |
| TGAACACCAAGAACAAGAAG+AGG | - | tig0041068:8561-8580 | Msa1460760:CDS | 40.0% | |
| TTGTCTCCTCTTCTTGTTCT+TGG | + | tig0041068:8570-8589 | None:intergenic | 40.0% | |
| GAACAAGAAGAGGAGACAAA+AGG | - | tig0041068:8571-8590 | Msa1460760:CDS | 40.0% | |
| TCAGGAAAGGTAGATTCTGT+TGG | - | tig0041068:9148-9167 | Msa1460760:CDS | 40.0% | |
| GACAAGGATGTTGAAGAAAC+CGG | - | tig0041068:9289-9308 | Msa1460760:intron | 40.0% | |
| CAAGATGCAGAAAAATGTGG+TGG | - | tig0041068:9333-9352 | Msa1460760:intron | 40.0% | |
| ! | TTTTCTTCAGTAAAGTCGGG+CGG | + | tig0041068:9424-9443 | None:intergenic | 40.0% |
| !! | GGAAGGTACCAAAAGCCAAA+AGG | - | tig0041068:8938-8957 | Msa1460760:CDS | 45.0% |
| !! | AGTCCAACCAAGCTTGTTGT+AGG | - | tig0041068:9058-9077 | Msa1460760:CDS | 45.0% |
| CTTCCTACAACAAGCTTGGT+TGG | + | tig0041068:9064-9083 | None:intergenic | 45.0% | |
| !! | ACCAAGCTTGTTGTAGGAAG+TGG | - | tig0041068:9064-9083 | Msa1460760:CDS | 45.0% |
| TCCACTTCCTACAACAAGCT+TGG | + | tig0041068:9068-9087 | None:intergenic | 45.0% | |
| GAAAGGGATAATGTCGCGAT+CGG | - | tig0041068:9105-9124 | Msa1460760:CDS | 45.0% | |
| !!! | GAAAGAGCTTTTTCGGACTC+AGG | - | tig0041068:9130-9149 | Msa1460760:CDS | 45.0% |
| !!! | AGCTTTTTCGGACTCAGGAA+AGG | - | tig0041068:9135-9154 | Msa1460760:CDS | 45.0% |
| CTCATTGAAGGAGAAGGACA+AGG | - | tig0041068:9273-9292 | Msa1460760:intron | 45.0% | |
| ! | CAGAAAAATGTGGTGGAGAG+TGG | - | tig0041068:9340-9359 | Msa1460760:intron | 45.0% |
| ! | TGATGACGAGGAAACAAGTG+AGG | - | tig0041068:9369-9388 | Msa1460760:intron | 45.0% |
| !! | GGAAGGTACCAAAAGCCAAA+AGG | - | tig0041068:8938-8957 | Msa1460760:CDS | 45.0% |
| !! | AGTCCAACCAAGCTTGTTGT+AGG | - | tig0041068:9058-9077 | Msa1460760:CDS | 45.0% |
| CTTCCTACAACAAGCTTGGT+TGG | + | tig0041068:9064-9083 | None:intergenic | 45.0% | |
| !! | ACCAAGCTTGTTGTAGGAAG+TGG | - | tig0041068:9064-9083 | Msa1460760:CDS | 45.0% |
| TCCACTTCCTACAACAAGCT+TGG | + | tig0041068:9068-9087 | None:intergenic | 45.0% | |
| GAAAGGGATAATGTCGCGAT+CGG | - | tig0041068:9105-9124 | Msa1460760:CDS | 45.0% | |
| !!! | GAAAGAGCTTTTTCGGACTC+AGG | - | tig0041068:9130-9149 | Msa1460760:CDS | 45.0% |
| !!! | AGCTTTTTCGGACTCAGGAA+AGG | - | tig0041068:9135-9154 | Msa1460760:CDS | 45.0% |
| CTCATTGAAGGAGAAGGACA+AGG | - | tig0041068:9273-9292 | Msa1460760:intron | 45.0% | |
| ! | CAGAAAAATGTGGTGGAGAG+TGG | - | tig0041068:9340-9359 | Msa1460760:intron | 45.0% |
| ! | TGATGACGAGGAAACAAGTG+AGG | - | tig0041068:9369-9388 | Msa1460760:intron | 45.0% |
| ! | GAGTGGCGCAAATGATGACG+AGG | - | tig0041068:9357-9376 | Msa1460760:intron | 55.0% |
| ! | GAGTGGCGCAAATGATGACG+AGG | - | tig0041068:9357-9376 | Msa1460760:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041068 | gene | 8413 | 9696 | 8413 | ID=Msa1460760;Name=Msa1460760 |
| tig0041068 | mRNA | 8413 | 9696 | 8413 | ID=Msa1460760-mRNA-1;Parent=Msa1460760;Name=Msa1460760-mRNA-1;_AED=0.31;_eAED=0.32;_QI=0|0|0|0.5|0|0|2|0|280 |
| tig0041068 | exon | 9635 | 9696 | 9635 | ID=Msa1460760-mRNA-1:exon:22887;Parent=Msa1460760-mRNA-1 |
| tig0041068 | exon | 8413 | 9193 | 8413 | ID=Msa1460760-mRNA-1:exon:22886;Parent=Msa1460760-mRNA-1 |
| tig0041068 | CDS | 9635 | 9696 | 9635 | ID=Msa1460760-mRNA-1:cds;Parent=Msa1460760-mRNA-1 |
| tig0041068 | CDS | 8413 | 9193 | 8413 | ID=Msa1460760-mRNA-1:cds;Parent=Msa1460760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
