Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035020 | sp|Q869R1|CTLHB_DICDI | 27.198 | 364 | 253 | 6 | 114 | 472 | 199 | 555 | 1.05e-36 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0035020 | 0.804710 | 1.895497e-49 | -8.615850e-47 |
| Msa0012710 | Msa0035020 | 0.808776 | 2.623368e-50 | -8.615850e-47 |
| Msa0030160 | Msa0035020 | 0.828099 | 1.084952e-54 | -8.615850e-47 |
| Msa0035020 | Msa0036540 | 0.800483 | 1.410999e-48 | -8.615850e-47 |
| Msa0035020 | Msa0061500 | 0.835104 | 2.038037e-56 | -8.615850e-47 |
| Msa0035020 | Msa0070930 | 0.804538 | 2.058556e-49 | -8.615850e-47 |
| Msa0035020 | Msa0090150 | 0.864456 | 1.199964e-64 | -8.615850e-47 |
| Msa0035020 | Msa0090380 | 0.806283 | 8.869891e-50 | -8.615850e-47 |
| Msa0035020 | Msa0092410 | 0.812309 | 4.524098e-51 | -8.615850e-47 |
| Msa0035020 | Msa0118820 | 0.812371 | 4.384035e-51 | -8.615850e-47 |
| Msa0035020 | Msa0119440 | 0.801775 | 7.677790e-49 | -8.615850e-47 |
| Msa0035020 | Msa0125650 | 0.839457 | 1.566991e-57 | -8.615850e-47 |
| Msa0035020 | Msa0137800 | 0.939385 | 1.389061e-99 | -8.615850e-47 |
| Msa0035020 | Msa0138900 | 0.805866 | 1.085250e-49 | -8.615850e-47 |
| Msa0035020 | Msa0152560 | 0.830035 | 3.683756e-55 | -8.615850e-47 |
| Msa0035020 | Msa0160960 | 0.813574 | 2.389212e-51 | -8.615850e-47 |
| Msa0035020 | Msa0184000 | 0.873536 | 1.363188e-67 | -8.615850e-47 |
| Msa0035020 | Msa0187310 | 0.814953 | 1.184659e-51 | -8.615850e-47 |
| Msa0035020 | Msa0189610 | 0.813398 | 2.611520e-51 | -8.615850e-47 |
| Msa0035020 | Msa0215590 | 0.803536 | 3.327295e-49 | -8.615850e-47 |
| Msa0035020 | Msa0217700 | 0.824775 | 6.722658e-54 | -8.615850e-47 |
| Msa0035020 | Msa0227340 | 0.804461 | 2.136728e-49 | -8.615850e-47 |
| Msa0035020 | Msa0264830 | 0.822267 | 2.595263e-53 | -8.615850e-47 |
| Msa0035020 | Msa0267790 | 0.828318 | 9.611942e-55 | -8.615850e-47 |
| Msa0035020 | Msa0269560 | 0.806465 | 8.117678e-50 | -8.615850e-47 |
| Msa0035020 | Msa0271550 | 0.820870 | 5.458406e-53 | -8.615850e-47 |
| Msa0035020 | Msa0278580 | 0.806187 | 9.293413e-50 | -8.615850e-47 |
| Msa0035020 | Msa0296820 | 0.831676 | 1.458057e-55 | -8.615850e-47 |
| Msa0035020 | Msa0302870 | 0.814105 | 1.824855e-51 | -8.615850e-47 |
| Msa0035020 | Msa0305620 | 0.802289 | 6.020760e-49 | -8.615850e-47 |
| Msa0035020 | Msa0310440 | 0.807562 | 4.756768e-50 | -8.615850e-47 |
| Msa0035020 | Msa0317970 | 0.839781 | 1.290450e-57 | -8.615850e-47 |
| Msa0035020 | Msa0319290 | 0.843401 | 1.433095e-58 | -8.615850e-47 |
| Msa0035020 | Msa0333650 | 0.806247 | 9.025926e-50 | -8.615850e-47 |
| Msa0035020 | Msa0340340 | 0.821785 | 3.357071e-53 | -8.615850e-47 |
| Msa0035020 | Msa0347750 | 0.818856 | 1.575750e-52 | -8.615850e-47 |
| Msa0035020 | Msa0348550 | 0.807923 | 3.986302e-50 | -8.615850e-47 |
| Msa0035020 | Msa0369920 | 0.839589 | 1.447817e-57 | -8.615850e-47 |
| Msa0035020 | Msa0371950 | 0.816035 | 6.804528e-52 | -8.615850e-47 |
| Msa0035020 | Msa0382370 | 0.815880 | 7.368423e-52 | -8.615850e-47 |
| Msa0035020 | Msa0389210 | 0.815208 | 1.040183e-51 | -8.615850e-47 |
| Msa0035020 | Msa0432160 | 0.823192 | 1.581297e-53 | -8.615850e-47 |
| Msa0035020 | Msa0476680 | 0.829448 | 5.119544e-55 | -8.615850e-47 |
| Msa0035020 | Msa0484800 | 0.825716 | 4.028352e-54 | -8.615850e-47 |
| Msa0035020 | Msa0509670 | 0.835049 | 2.103913e-56 | -8.615850e-47 |
| Msa0035020 | Msa0521010 | 0.830004 | 3.747368e-55 | -8.615850e-47 |
| Msa0035020 | Msa0526680 | 0.809170 | 2.160285e-50 | -8.615850e-47 |
| Msa0035020 | Msa0526730 | 0.807153 | 5.808621e-50 | -8.615850e-47 |
| Msa0035020 | Msa0534870 | 0.854411 | 1.253171e-61 | -8.615850e-47 |
| Msa0035020 | Msa0549890 | 0.804008 | 2.654131e-49 | -8.615850e-47 |
| Msa0035020 | Msa0574600 | 0.806082 | 9.774997e-50 | -8.615850e-47 |
| Msa0035020 | Msa0600590 | 0.801233 | 9.919339e-49 | -8.615850e-47 |
| Msa0035020 | Msa0613340 | 0.807377 | 5.208652e-50 | -8.615850e-47 |
| Msa0035020 | Msa0614920 | 0.832135 | 1.123746e-55 | -8.615850e-47 |
| Msa0035020 | Msa0631320 | 0.843121 | 1.702841e-58 | -8.615850e-47 |
| Msa0035020 | Msa0653670 | 0.818415 | 1.983828e-52 | -8.615850e-47 |
| Msa0035020 | Msa0708310 | 0.817270 | 3.596714e-52 | -8.615850e-47 |
| Msa0035020 | Msa0711150 | 0.825419 | 4.735395e-54 | -8.615850e-47 |
| Msa0035020 | Msa0743930 | 0.802981 | 4.335153e-49 | -8.615850e-47 |
| Msa0035020 | Msa0752600 | 0.814326 | 1.631056e-51 | -8.615850e-47 |
| Msa0035020 | Msa0822500 | 0.809787 | 1.592431e-50 | -8.615850e-47 |
| Msa0035020 | Msa0823370 | 0.842847 | 2.013439e-58 | -8.615850e-47 |
| Msa0035020 | Msa0828240 | 0.814177 | 1.759694e-51 | -8.615850e-47 |
| Msa0035020 | Msa0870510 | 0.806032 | 1.001487e-49 | -8.615850e-47 |
| Msa0035020 | Msa0880810 | 0.824368 | 8.383944e-54 | -8.615850e-47 |
| Msa0035020 | Msa0945130 | 0.810257 | 1.260908e-50 | -8.615850e-47 |
| Msa0035020 | Msa0999680 | 0.801361 | 9.338432e-49 | -8.615850e-47 |
| Msa0035020 | Msa1030810 | 0.801819 | 7.522277e-49 | -8.615850e-47 |
| Msa0035020 | Msa1062040 | 0.808116 | 3.627246e-50 | -8.615850e-47 |
| Msa0035020 | Msa1069890 | 0.806833 | 6.788651e-50 | -8.615850e-47 |
| Msa0035020 | Msa1089450 | 0.826834 | 2.182842e-54 | -8.615850e-47 |
| Msa0035020 | Msa1096070 | 0.832347 | 9.955447e-56 | -8.615850e-47 |
| Msa0035020 | Msa1184690 | 0.800578 | 1.349394e-48 | -8.615850e-47 |
| Msa0035020 | Msa1211230 | -0.804120 | 2.515962e-49 | -8.615850e-47 |
| Msa0035020 | Msa1218580 | 0.822753 | 2.000948e-53 | -8.615850e-47 |
| Msa0035020 | Msa1225100 | 0.851063 | 1.132675e-60 | -8.615850e-47 |
| Msa0035020 | Msa1231840 | 0.800266 | 1.562323e-48 | -8.615850e-47 |
| Msa0035020 | Msa1259860 | 0.809943 | 1.473431e-50 | -8.615850e-47 |
| Msa0035020 | Msa1278700 | 0.813836 | 2.092103e-51 | -8.615850e-47 |
| Msa0035020 | Msa1279480 | 0.804579 | 2.019170e-49 | -8.615850e-47 |
| Msa0035020 | Msa1280150 | 0.808298 | 3.317523e-50 | -8.615850e-47 |
| Msa0035020 | Msa1329870 | 0.850146 | 2.050456e-60 | -8.615850e-47 |
| Msa0035020 | Msa1331050 | -0.804964 | 1.677645e-49 | -8.615850e-47 |
| Msa0035020 | Msa1345940 | 0.891752 | 2.980656e-74 | -8.615850e-47 |
| Msa0035020 | Msa1353890 | 0.820664 | 6.086268e-53 | -8.615850e-47 |
| Msa0035020 | Msa1355890 | 0.827963 | 1.170019e-54 | -8.615850e-47 |
| Msa0035020 | Msa1372280 | 0.809131 | 2.201819e-50 | -8.615850e-47 |
| Msa0035020 | Msa1380220 | 0.815443 | 9.219276e-52 | -8.615850e-47 |
| Msa0035020 | Msa1390290 | 0.818138 | 2.291923e-52 | -8.615850e-47 |
| Msa0035020 | Msa1391550 | 0.825540 | 4.432789e-54 | -8.615850e-47 |
| Msa0035020 | Msa1405220 | 0.848493 | 5.919324e-60 | -8.615850e-47 |
| Msa0035020 | Msa1418280 | 0.807843 | 4.146128e-50 | -8.615850e-47 |
| Msa0035020 | Msa1430140 | 0.801164 | 1.024362e-48 | -8.615850e-47 |
| Msa0035020 | Msa1430550 | 0.802201 | 6.278723e-49 | -8.615850e-47 |
| Msa0035020 | Msa1433410 | 0.806851 | 6.729242e-50 | -8.615850e-47 |
| Msa0035020 | Msa1436600 | 0.825635 | 4.210998e-54 | -8.615850e-47 |
| Msa0035020 | Msa1444560 | 0.808033 | 3.777313e-50 | -8.615850e-47 |
| Msa0035020 | Msa1457160 | 0.810791 | 9.667946e-51 | -8.615850e-47 |
| Msa0035020 | Msa1460370 | 0.808151 | 3.565393e-50 | -8.615850e-47 |
| Msa0035020 | Msa1460760 | 0.800643 | 1.309067e-48 | -8.615850e-47 |
| Msa0035020 | Msa1462360 | 0.817094 | 3.941381e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035020 | MtrunA17_Chr1g0210161 | 99.597 | 496 | 2 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1003 |
| Msa0035020 | MtrunA17_Chr5g0422761 | 80.000 | 485 | 94 | 1 | 13 | 494 | 7 | 491 | 0.0 | 770 |
| Msa0035020 | MtrunA17_Chr4g0061051 | 95.312 | 64 | 3 | 0 | 433 | 496 | 1 | 64 | 2.06e-39 | 137 |
| Msa0035020 | MtrunA17_Chr7g0275761 | 92.188 | 64 | 5 | 0 | 433 | 496 | 1 | 64 | 6.86e-38 | 132 |
| Msa0035020 | MtrunA17_Chr3g0090051 | 26.689 | 296 | 203 | 3 | 156 | 451 | 262 | 543 | 7.41e-28 | 117 |
| Msa0035020 | MtrunA17_Chr7g0254111 | 24.439 | 401 | 276 | 9 | 90 | 482 | 74 | 455 | 1.26e-23 | 103 |
| Msa0035020 | MtrunA17_Chr6g0460811 | 23.184 | 358 | 262 | 6 | 98 | 451 | 67 | 415 | 2.12e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035020 | AT1G25500.2 | 75.926 | 486 | 110 | 3 | 1 | 482 | 1 | 483 | 0.0 | 696 |
| Msa0035020 | AT1G25500.3 | 78.729 | 409 | 86 | 1 | 75 | 482 | 17 | 425 | 0.0 | 620 |
| Msa0035020 | AT1G25500.1 | 81.188 | 303 | 56 | 1 | 127 | 428 | 1 | 303 | 1.74e-170 | 483 |
| Msa0035020 | AT5G13760.1 | 25.000 | 440 | 279 | 11 | 31 | 451 | 126 | 533 | 7.93e-32 | 129 |
| Msa0035020 | AT3G04440.2 | 24.500 | 400 | 278 | 11 | 90 | 484 | 63 | 443 | 5.63e-17 | 83.6 |
| Msa0035020 | AT3G04440.1 | 24.500 | 400 | 278 | 11 | 90 | 484 | 86 | 466 | 5.71e-17 | 84.0 |
| Msa0035020 | AT3G03700.1 | 24.500 | 400 | 278 | 11 | 90 | 484 | 86 | 466 | 5.98e-17 | 84.0 |
Find 163 sgRNAs with CRISPR-Local
Find 344 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGGTTAACCGAAACTTAT+TGG | 0.156204 | 1_1:+63031787 | Msa0035020:CDS |
| TATTAATTAGTATAATAATT+AGG | 0.160749 | 1_1:-63030897 | None:intergenic |
| GTGTTTCTTGTTCTTCTTCA+TGG | 0.194172 | 1_1:+63033096 | Msa0035020:CDS |
| TAGGAATAGGAGAAGGTTTA+TGG | 0.195433 | 1_1:+63034900 | Msa0035020:three_prime_UTR |
| AAATTTGGTGTTAAATTAAT+AGG | 0.197359 | 1_1:+63034881 | Msa0035020:three_prime_UTR |
| GATTGCACTGGGATTCCTTT+TGG | 0.198367 | 1_1:+63031683 | Msa0035020:CDS |
| GGTGGAATTGGGACTGTTCT+TGG | 0.249819 | 1_1:+63031828 | Msa0035020:CDS |
| AATGGAATGAATATGGAAAA+AGG | 0.252792 | 1_1:-63031021 | None:intergenic |
| GTGTTTGGGCGTGGGTTAAA+TGG | 0.262462 | 1_1:+63034301 | Msa0035020:CDS |
| ATTAATTAGTATAATAATTA+GGG | 0.280736 | 1_1:-63030896 | None:intergenic |
| TATGCGGCTGCTGGTGGAAT+TGG | 0.288454 | 1_1:+63031816 | Msa0035020:CDS |
| AGGAATCAATGGAATGAATA+TGG | 0.294878 | 1_1:-63031028 | None:intergenic |
| TCCCATCTTTGAATCAATAA+AGG | 0.295109 | 1_1:-63034657 | None:intergenic |
| CATTATTTACTGCGGCTATC+AGG | 0.296862 | 1_1:+63033211 | Msa0035020:CDS |
| CTGGAACTTGTGCTGGTGTT+TGG | 0.300120 | 1_1:+63034286 | Msa0035020:CDS |
| CATGCTCATGGGTATGGTTT+TGG | 0.306935 | 1_1:+63034356 | Msa0035020:CDS |
| TGACTTCGCTTCCGCCATTC+AGG | 0.310826 | 1_1:+63031137 | Msa0035020:CDS |
| CACTTACAGATAGCTGTTAA+TGG | 0.312347 | 1_1:+63034135 | Msa0035020:intron |
| TGCAGAACCAGCATCGTAAA+TGG | 0.317444 | 1_1:-63032724 | None:intergenic |
| ATGGACTTGGTTGTTGTTGT+TGG | 0.342035 | 1_1:+63031851 | Msa0035020:CDS |
| GGTTAACCCGGCATGATTCC+CGG | 0.344297 | 1_1:-63031775 | None:intergenic |
| TGGATGGCCTTATGGTCATT+TGG | 0.345668 | 1_1:+63032823 | Msa0035020:CDS |
| TGGGAGTTATTCCAATCAAC+TGG | 0.349178 | 1_1:+63034189 | Msa0035020:CDS |
| AAGTACACTCCTGGTCTTAC+CGG | 0.351688 | 1_1:+63031756 | Msa0035020:CDS |
| TCACATCCTCACCACTTATC+TGG | 0.355225 | 1_1:+63031908 | Msa0035020:CDS |
| TATGCTTTAACAACATCTTT+TGG | 0.365686 | 1_1:+63033171 | Msa0035020:CDS |
| GGTGTTAAATTAATAGGAAT+AGG | 0.366858 | 1_1:+63034887 | Msa0035020:three_prime_UTR |
| AATGTTGCTAACTGTAATAA+TGG | 0.368509 | 1_1:-63035093 | None:intergenic |
| TGGAACTTGTGCTGGTGTTT+GGG | 0.373882 | 1_1:+63034287 | Msa0035020:CDS |
| CTTGTGCTGGTGTTTGGGCG+TGG | 0.385820 | 1_1:+63034292 | Msa0035020:CDS |
| TGATTTCCTCTTTCATCTTG+TGG | 0.389585 | 1_1:+63033404 | Msa0035020:CDS |
| TGTTTCTCCATTCCCAATGA+TGG | 0.391255 | 1_1:+63031086 | Msa0035020:exon |
| CGCCGCCACTTCTCCTACTC+CGG | 0.391425 | 1_1:-63031578 | None:intergenic |
| TGGCCGCTTTATGCGGCTGC+TGG | 0.391745 | 1_1:+63031807 | Msa0035020:CDS |
| ATTAGAGAGGAGAAGGTCAA+TGG | 0.392843 | 1_1:-63030956 | None:intergenic |
| CTTTCATCATTTGAGTAGCC+TGG | 0.393996 | 1_1:-63031878 | None:intergenic |
| ATGCGGCTGCTGGTGGAATT+GGG | 0.395736 | 1_1:+63031817 | Msa0035020:CDS |
| GGTTGGATTGGCAATGGTTG+TGG | 0.400792 | 1_1:+63034590 | Msa0035020:intron |
| TGGTAAAAGCTTCAACAATT+CGG | 0.402401 | 1_1:+63034155 | Msa0035020:CDS |
| ATACTGCAAAGATTTCATTA+AGG | 0.403891 | 1_1:-63033151 | None:intergenic |
| TGGACTTGGTTGTTGTTGTT+GGG | 0.404889 | 1_1:+63031852 | Msa0035020:CDS |
| CACATCCATGCTCATGGGTA+TGG | 0.406680 | 1_1:+63034350 | Msa0035020:CDS |
| GCTTGGTGTGTAGGGATGGA+TGG | 0.409259 | 1_1:+63034981 | Msa0035020:three_prime_UTR |
| ACCCTTTATTGATTCAAAGA+TGG | 0.412790 | 1_1:+63034655 | Msa0035020:CDS |
| GTTGTTGTTGTTGGGTTCCC+AGG | 0.413364 | 1_1:+63031860 | Msa0035020:CDS |
| TAACAAATATGCCTATGTTC+AGG | 0.414206 | 1_1:+63033446 | Msa0035020:CDS |
| CCCTTTATTGATTCAAAGAT+GGG | 0.419622 | 1_1:+63034656 | Msa0035020:CDS |
| GGACTGTTCTTGGATGGACT+TGG | 0.421193 | 1_1:+63031838 | Msa0035020:CDS |
| AGTGATAGAGTTATTATGAT+TGG | 0.422509 | 1_1:+63034324 | Msa0035020:CDS |
| CTTGTGGCATATGATTGTTC+AGG | 0.424285 | 1_1:+63034222 | Msa0035020:CDS |
| GTGCCTCAACCCCAGTTGAT+TGG | 0.426924 | 1_1:-63034200 | None:intergenic |
| TGTAATCAACAATGTAGAAT+TGG | 0.428062 | 1_1:+63034929 | Msa0035020:three_prime_UTR |
| AATATAGGAGTGCTCGAGCC+AGG | 0.436736 | 1_1:+63034727 | Msa0035020:CDS |
| CCGCTTTATGCGGCTGCTGG+TGG | 0.442048 | 1_1:+63031810 | Msa0035020:CDS |
| TGTGATTCATTTGATTGCAC+TGG | 0.442197 | 1_1:+63031671 | Msa0035020:CDS |
| ACTGTGCATGTTATAGTGTC+TGG | 0.442564 | 1_1:+63033069 | Msa0035020:CDS |
| ACCTCATGGCTTGGTGTGTA+GGG | 0.442923 | 1_1:+63034973 | Msa0035020:three_prime_UTR |
| AAAGAGGGAGAATCCATCAT+TGG | 0.446656 | 1_1:-63031099 | None:intergenic |
| CAGACTTCCATTTACGATGC+TGG | 0.447339 | 1_1:+63032717 | Msa0035020:intron |
| TGGCGGCGGCAGCAGTGAAA+TGG | 0.448408 | 1_1:+63031593 | Msa0035020:CDS |
| CCCATCTTTGAATCAATAAA+GGG | 0.449353 | 1_1:-63034656 | None:intergenic |
| TCTTTCAGATACGTGGACTT+AGG | 0.451037 | 1_1:+63033343 | Msa0035020:intron |
| TTATGGTCATTTGGAGCAGC+AGG | 0.454748 | 1_1:+63032832 | Msa0035020:CDS |
| AAGGTCAATGGGTTATGTTA+TGG | 0.456254 | 1_1:-63030944 | None:intergenic |
| TTAGAGAGGAGAAGGTCAAT+GGG | 0.457053 | 1_1:-63030955 | None:intergenic |
| TTATGGTAGGGTGATGGTGG+TGG | 0.460666 | 1_1:-63030927 | None:intergenic |
| TACATCACCGACTTCAATAT+AGG | 0.460955 | 1_1:+63034712 | Msa0035020:CDS |
| ATAAAGCGGCCAATAAGTTT+CGG | 0.462577 | 1_1:-63031796 | None:intergenic |
| GAATTGGGACTGTTCTTGGA+TGG | 0.462942 | 1_1:+63031832 | Msa0035020:CDS |
| GATTTCATTAAGGAGTTAGC+AGG | 0.469510 | 1_1:-63033141 | None:intergenic |
| CGGCAGAACAATCGCGGCGG+TGG | 0.470242 | 1_1:+63031622 | Msa0035020:CDS |
| TTGTGCTGGTGTTTGGGCGT+GGG | 0.472291 | 1_1:+63034293 | Msa0035020:CDS |
| GGTCTTACCGGGAATCATGC+CGG | 0.474937 | 1_1:+63031768 | Msa0035020:CDS |
| TGCTGCTCCAAATGACCATA+AGG | 0.477819 | 1_1:-63032830 | None:intergenic |
| TAGGAGAAGGTTTATGGTGG+TGG | 0.483513 | 1_1:+63034906 | Msa0035020:three_prime_UTR |
| AACTTATTGGCCGCTTTATG+CGG | 0.485649 | 1_1:+63031800 | Msa0035020:CDS |
| CGAGAAAACGCCTCTATATG+AGG | 0.486880 | 1_1:+63034777 | Msa0035020:CDS |
| TCAATGGGTTATGTTATGGT+AGG | 0.487787 | 1_1:-63030940 | None:intergenic |
| AAGAGGGAGAATCCATCATT+GGG | 0.488839 | 1_1:-63031098 | None:intergenic |
| ATGTTATGGTAGGGTGATGG+TGG | 0.494396 | 1_1:-63030930 | None:intergenic |
| ATTCCAATCAACTGGGGTTG+AGG | 0.495610 | 1_1:+63034197 | Msa0035020:CDS |
| GCCGCCACTTCTCCTACTCC+GGG | 0.498850 | 1_1:-63031577 | None:intergenic |
| CTTGGTGTGTAGGGATGGAT+GGG | 0.502460 | 1_1:+63034982 | Msa0035020:three_prime_UTR |
| TAGTAATAGAGAGGAATCAA+TGG | 0.502514 | 1_1:-63031039 | None:intergenic |
| TGGCTCCACATCCATGCTCA+TGG | 0.509273 | 1_1:+63034344 | Msa0035020:CDS |
| TACCTCATGGCTTGGTGTGT+AGG | 0.511019 | 1_1:+63034972 | Msa0035020:three_prime_UTR |
| GTGGCTTCAAACTTGAGTGA+TGG | 0.511129 | 1_1:+63032859 | Msa0035020:CDS |
| ATAAAAGATTAGAGAGGAGA+AGG | 0.511987 | 1_1:-63030963 | None:intergenic |
| GGCTATCAGGACACTGCGAT+GGG | 0.512972 | 1_1:+63033224 | Msa0035020:CDS |
| CGTGGACTTAGGTCAAAGAT+TGG | 0.513470 | 1_1:+63033354 | Msa0035020:CDS |
| ATTTGGAGCAGCAGGTGTTG+TGG | 0.514073 | 1_1:+63032840 | Msa0035020:CDS |
| TGGCTTCAAACTTGAGTGAT+GGG | 0.514253 | 1_1:+63032860 | Msa0035020:CDS |
| TTGATAACTGGAACTTGTGC+TGG | 0.515273 | 1_1:+63034279 | Msa0035020:CDS |
| CACGACACTCTCATGACCTC+GGG | 0.515499 | 1_1:-63032775 | None:intergenic |
| CAGCAGTGAAATGGTGGTGG+CGG | 0.515947 | 1_1:+63031602 | Msa0035020:CDS |
| ACATGTGAATCCTCATATAG+AGG | 0.516243 | 1_1:-63034787 | None:intergenic |
| AACTGGGGTTGAGGCACTTG+TGG | 0.518075 | 1_1:+63034206 | Msa0035020:CDS |
| GTCATGTTTACCTCATGGCT+TGG | 0.521177 | 1_1:+63034964 | Msa0035020:three_prime_UTR |
| CATGGCTTGGTGTGTAGGGA+TGG | 0.523508 | 1_1:+63034977 | Msa0035020:three_prime_UTR |
| GATGTAGTGTCTCAGACATC+TGG | 0.524115 | 1_1:-63034695 | None:intergenic |
| GGCTCCACATCCATGCTCAT+GGG | 0.527680 | 1_1:+63034345 | Msa0035020:CDS |
| GGGACGCTGGTGGCTTCTTG+TGG | 0.527891 | 1_1:+63032882 | Msa0035020:CDS |
| CCAATAAGTTTCGGTTAACC+CGG | 0.528188 | 1_1:-63031787 | None:intergenic |
| TTTCATCATTTGAGTAGCCT+GGG | 0.528321 | 1_1:-63031877 | None:intergenic |
| GGAGAATCCATCATTGGGAA+TGG | 0.529623 | 1_1:-63031093 | None:intergenic |
| GTAGAATTGGATGAGTGAAA+AGG | 0.529818 | 1_1:+63034942 | Msa0035020:three_prime_UTR |
| GTCTTACCGGGAATCATGCC+GGG | 0.530497 | 1_1:+63031769 | Msa0035020:CDS |
| ATGATGATTCATAACCTGAA+TGG | 0.532760 | 1_1:-63031151 | None:intergenic |
| TGGATTGGCAATGGTTGTGG+TGG | 0.533456 | 1_1:+63034593 | Msa0035020:CDS |
| ATGTTATATCCGTCATAGAC+AGG | 0.534896 | 1_1:+63032015 | Msa0035020:CDS |
| CGGCTATCAGGACACTGCGA+TGG | 0.536707 | 1_1:+63033223 | Msa0035020:CDS |
| CGGCAGCAGTGAAATGGTGG+TGG | 0.537136 | 1_1:+63031599 | Msa0035020:CDS |
| AGCGAAGTCAGAGGAAGAAG+AGG | 0.539083 | 1_1:-63031124 | None:intergenic |
| GAGTCTCCACAAGATGAAAG+AGG | 0.544256 | 1_1:-63033410 | None:intergenic |
| CATACCCATGAGCATGGATG+TGG | 0.547051 | 1_1:-63034349 | None:intergenic |
| GATAGAGTGCATCCCGGAGT+AGG | 0.552108 | 1_1:+63031565 | Msa0035020:intron |
| GAATAATAATAGTAATAGAG+AGG | 0.555871 | 1_1:-63031048 | None:intergenic |
| GTGATTCATTTGATTGCACT+GGG | 0.557586 | 1_1:+63031672 | Msa0035020:CDS |
| AAAAGGTCATGTTTACCTCA+TGG | 0.558043 | 1_1:+63034959 | Msa0035020:three_prime_UTR |
| GTTATGTTATGGTAGGGTGA+TGG | 0.561053 | 1_1:-63030933 | None:intergenic |
| TTTCTCGTATAGGGTCATCA+TGG | 0.563735 | 1_1:-63034761 | None:intergenic |
| AGTACACTCCTGGTCTTACC+GGG | 0.564946 | 1_1:+63031757 | Msa0035020:CDS |
| ACTTATGACAGCCAGATAAG+TGG | 0.565648 | 1_1:-63031919 | None:intergenic |
| ATCATGGAATCGATAGTCCC+TGG | 0.566285 | 1_1:-63034745 | None:intergenic |
| GCATGATTCCCGGTAAGACC+AGG | 0.566292 | 1_1:-63031765 | None:intergenic |
| CCACCAGCAGCCGCATAAAG+CGG | 0.568080 | 1_1:-63031810 | None:intergenic |
| AACATTGATAAGTACACTCC+TGG | 0.568478 | 1_1:+63031747 | Msa0035020:CDS |
| CAATGGGTTATGTTATGGTA+GGG | 0.573109 | 1_1:-63030939 | None:intergenic |
| CAATTCGGCTAGAGATGCAT+GGG | 0.574864 | 1_1:+63034170 | Msa0035020:CDS |
| CGGCGGCAGCAGTGAAATGG+TGG | 0.576587 | 1_1:+63031596 | Msa0035020:CDS |
| TCTTCTTCATGGTGGTAGAG+AGG | 0.577354 | 1_1:+63033107 | Msa0035020:CDS |
| ATATAGGAGTGCTCGAGCCA+GGG | 0.586115 | 1_1:+63034728 | Msa0035020:CDS |
| GGGAGTTATTCCAATCAACT+GGG | 0.587121 | 1_1:+63034190 | Msa0035020:CDS |
| ACAATTCGGCTAGAGATGCA+TGG | 0.589439 | 1_1:+63034169 | Msa0035020:CDS |
| ACAATCTGGTACCTGAACAT+AGG | 0.589676 | 1_1:-63033457 | None:intergenic |
| CTGTGCATGTTATAGTGTCT+GGG | 0.592316 | 1_1:+63033070 | Msa0035020:CDS |
| CAAAACCATACCCATGAGCA+TGG | 0.598545 | 1_1:-63034355 | None:intergenic |
| TTATGGCTCATTATTTACTG+CGG | 0.599332 | 1_1:+63033203 | Msa0035020:CDS |
| AAATTAATAGGAATAGGAGA+AGG | 0.602610 | 1_1:+63034893 | Msa0035020:three_prime_UTR |
| ACACGACACTCTCATGACCT+CGG | 0.602868 | 1_1:-63032776 | None:intergenic |
| TATGGTGATAGAGTGCATCC+CGG | 0.611166 | 1_1:+63031559 | Msa0035020:intron |
| GAATAGGAGAAGGTTTATGG+TGG | 0.613836 | 1_1:+63034903 | Msa0035020:three_prime_UTR |
| TTTCTTGTTCTTCTTCATGG+TGG | 0.614678 | 1_1:+63033099 | Msa0035020:CDS |
| GGGCAAATACCTGTCTATGA+CGG | 0.619121 | 1_1:-63032024 | None:intergenic |
| CGGAGTAGGAGAAGTGGCGG+CGG | 0.622097 | 1_1:+63031579 | Msa0035020:CDS |
| TCCCGGAGTAGGAGAAGTGG+CGG | 0.626510 | 1_1:+63031576 | Msa0035020:CDS |
| GGCTTCAAACTTGAGTGATG+GGG | 0.633313 | 1_1:+63032861 | Msa0035020:CDS |
| TATCAGGACACTGCGATGGG+AGG | 0.638311 | 1_1:+63033227 | Msa0035020:CDS |
| GAGCACTCCTATATTGAAGT+CGG | 0.639960 | 1_1:-63034719 | None:intergenic |
| GCATCCCGGAGTAGGAGAAG+TGG | 0.641070 | 1_1:+63031573 | Msa0035020:CDS |
| GCATGTTATAGTGTCTGGGA+TGG | 0.645145 | 1_1:+63033074 | Msa0035020:CDS |
| TGGTGGCGGCAGAACAATCG+CGG | 0.651883 | 1_1:+63031616 | Msa0035020:CDS |
| ATGATTCATAACCTGAATGG+CGG | 0.655806 | 1_1:-63031148 | None:intergenic |
| AGGCGAATAAAAGATTAGAG+AGG | 0.661694 | 1_1:-63030969 | None:intergenic |
| TGACAGCCAGATAAGTGGTG+AGG | 0.678207 | 1_1:-63031914 | None:intergenic |
| AATGGCGGAAGCGAAGTCAG+AGG | 0.682812 | 1_1:-63031133 | None:intergenic |
| GATGGTTTGGAATCTTCCCG+AGG | 0.685332 | 1_1:+63032759 | Msa0035020:CDS |
| GAAGGAAAACGTAAGAACCA+AGG | 0.689997 | 1_1:-63030989 | None:intergenic |
| TATAGATACGATCTACACAA+TGG | 0.703534 | 1_1:-63034844 | None:intergenic |
| GGAGTTATTCCAATCAACTG+GGG | 0.706705 | 1_1:+63034191 | Msa0035020:CDS |
| GCTTCAAACTTGAGTGATGG+GGG | 0.710727 | 1_1:+63032862 | Msa0035020:CDS |
| TCCCTACACACCAAGCCATG+AGG | 0.713135 | 1_1:-63034974 | None:intergenic |
| TGGCGGCAGAACAATCGCGG+CGG | 0.757815 | 1_1:+63031619 | Msa0035020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACATAAACAAATATTATT+GGG | - | chr1_1:63031206-63031225 | None:intergenic | 10.0% |
| !! | ATAACATAAACAAATATTAT+TGG | - | chr1_1:63031207-63031226 | None:intergenic | 10.0% |
| !!! | TATAATTTTTACAAAAATCA+TGG | - | chr1_1:63034446-63034465 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032459-63032478 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032459-63032478 | None:intergenic | 100.0% |
| !!! | TTTTCATTCTAAAAAAACAA+GGG | - | chr1_1:63031260-63031279 | None:intergenic | 15.0% |
| !!! | TTTTTCATTCTAAAAAAACA+AGG | - | chr1_1:63031261-63031280 | None:intergenic | 15.0% |
| !! | GAAGTTAAAATTTCTAAATT+TGG | + | chr1_1:63031528-63031547 | Msa0035020:intron | 15.0% |
| !! | AGTGAATAATATTATTTGAT+CGG | + | chr1_1:63032101-63032120 | Msa0035020:intron | 15.0% |
| !!! | TATTGACTTTTATAAATGTT+TGG | - | chr1_1:63032330-63032349 | None:intergenic | 15.0% |
| !! | ATATAAAAAAATCAACAATC+TGG | - | chr1_1:63033474-63033493 | None:intergenic | 15.0% |
| !! | TATACAAACATAAATGTATT+TGG | - | chr1_1:63033747-63033766 | None:intergenic | 15.0% |
| !! | GAATAGTCTAATAATTAAAA+AGG | + | chr1_1:63033865-63033884 | Msa0035020:intron | 15.0% |
| !!! | AGCATATTTTCATATAAATT+TGG | + | chr1_1:63034866-63034885 | Msa0035020:three_prime_UTR | 15.0% |
| !!! | AAATTTGGTGTTAAATTAAT+AGG | + | chr1_1:63034881-63034900 | Msa0035020:three_prime_UTR | 15.0% |
| !! | GAATAATAATAGTAATAGAG+AGG | - | chr1_1:63031051-63031070 | None:intergenic | 20.0% |
| !! | TAAACAAATATTATTGGGTA+CGG | - | chr1_1:63031201-63031220 | None:intergenic | 20.0% |
| !!! | ATCATTTTAATTGCTTTATC+TGG | + | chr1_1:63031231-63031250 | Msa0035020:intron | 20.0% |
| !!! | TCATTTTAATTGCTTTATCT+GGG | + | chr1_1:63031232-63031251 | Msa0035020:intron | 20.0% |
| !!! | GTAAAGTTAGTATTTTTATG+TGG | + | chr1_1:63031286-63031305 | Msa0035020:intron | 20.0% |
| !!! | TAAACAGATTTTTATTCGTT+TGG | + | chr1_1:63031410-63031429 | Msa0035020:intron | 20.0% |
| !!! | AAACAGATTTTTATTCGTTT+GGG | + | chr1_1:63031411-63031430 | Msa0035020:intron | 20.0% |
| !!! | ATAACTTTTTTGCTATTCAA+GGG | - | chr1_1:63031451-63031470 | None:intergenic | 20.0% |
| !!! | TTTATAAATGTTTGGATTAG+CGG | - | chr1_1:63032322-63032341 | None:intergenic | 20.0% |
| !! | TTTAATATAAGATGATGAAG+TGG | + | chr1_1:63032374-63032393 | Msa0035020:intron | 20.0% |
| !! | TTAATATAAGATGATGAAGT+GGG | + | chr1_1:63032375-63032394 | Msa0035020:intron | 20.0% |
| !!! | ACTACTAAAACTTCAATTTT+GGG | - | chr1_1:63032483-63032502 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAGAAAAAAAAC+GGG | - | chr1_1:63032646-63032665 | None:intergenic | 20.0% |
| !! | GAAAGAAAGAAGAAAAAAAA+CGG | - | chr1_1:63032647-63032666 | None:intergenic | 20.0% |
| !!! | CGTTAAACATGATTTTTAAT+AGG | + | chr1_1:63034040-63034059 | Msa0035020:intron | 20.0% |
| !!! | ATTTTTACAAAAATCATGGT+GGG | - | chr1_1:63034442-63034461 | None:intergenic | 20.0% |
| !!! | AATTTTTACAAAAATCATGG+TGG | - | chr1_1:63034443-63034462 | None:intergenic | 20.0% |
| !!! | AAATATGTAACTTTGTTTTC+AGG | + | chr1_1:63034569-63034588 | Msa0035020:intron | 20.0% |
| ! | ATGGAATGAATATGGAAAAA+GGG | - | chr1_1:63031023-63031042 | None:intergenic | 25.0% |
| ! | AATGGAATGAATATGGAAAA+AGG | - | chr1_1:63031024-63031043 | None:intergenic | 25.0% |
| !! | TTTTCACTCTTTTTCTCTAT+TGG | + | chr1_1:63031173-63031192 | Msa0035020:intron | 25.0% |
| !! | TTTCACTCTTTTTCTCTATT+GGG | + | chr1_1:63031174-63031193 | Msa0035020:intron | 25.0% |
| !! | AACAGATTTTTATTCGTTTG+GGG | + | chr1_1:63031412-63031431 | Msa0035020:intron | 25.0% |
| !!! | GATAACTTTTTTGCTATTCA+AGG | - | chr1_1:63031452-63031471 | None:intergenic | 25.0% |
| !!! | CTAAATTTGGTTGCTTTTTA+TGG | + | chr1_1:63031541-63031560 | Msa0035020:intron | 25.0% |
| ! | AACACAAACATATGATTTCA+GGG | - | chr1_1:63032047-63032066 | None:intergenic | 25.0% |
| ! | TATTCACTCTAACATATTCA+GGG | - | chr1_1:63032089-63032108 | None:intergenic | 25.0% |
| ! | TTATTCACTCTAACATATTC+AGG | - | chr1_1:63032090-63032109 | None:intergenic | 25.0% |
| !!! | TTTTGTGTTCTAAAAGAACA+GGG | - | chr1_1:63032162-63032181 | None:intergenic | 25.0% |
| !!! | ATTTTGTGTTCTAAAAGAAC+AGG | - | chr1_1:63032163-63032182 | None:intergenic | 25.0% |
| ! | CATTGCAACTTGAAATTTAT+TGG | - | chr1_1:63032205-63032224 | None:intergenic | 25.0% |
| !!! | AAATTTCAAGTTGCAATGTT+TGG | + | chr1_1:63032207-63032226 | Msa0035020:intron | 25.0% |
| ! | CAATAATGTACTTCTTGATA+CGG | + | chr1_1:63032345-63032364 | Msa0035020:intron | 25.0% |
| ! | AATAATGTACTTCTTGATAC+GGG | + | chr1_1:63032346-63032365 | Msa0035020:intron | 25.0% |
| !! | TACTAAAACTTCAATTTTGG+GGG | - | chr1_1:63032481-63032500 | None:intergenic | 25.0% |
| !! | CTACTAAAACTTCAATTTTG+GGG | - | chr1_1:63032482-63032501 | None:intergenic | 25.0% |
| !! | GACTACTAAAACTTCAATTT+TGG | - | chr1_1:63032484-63032503 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTTTGTCTACGA+TGG | + | chr1_1:63032665-63032684 | Msa0035020:intron | 25.0% |
| ! | TCATTCTGTATGTTCTTATT+TGG | + | chr1_1:63032926-63032945 | Msa0035020:intron | 25.0% |
| ! | TTATTACATTTCATGCTTAC+AGG | + | chr1_1:63033002-63033021 | Msa0035020:intron | 25.0% |
| !! | TTTTCTCTGTAAGCTTATTT+TGG | + | chr1_1:63033025-63033044 | Msa0035020:CDS | 25.0% |
| ! | ATACTGCAAAGATTTCATTA+AGG | - | chr1_1:63033154-63033173 | None:intergenic | 25.0% |
| !! | TATGCTTTAACAACATCTTT+TGG | + | chr1_1:63033171-63033190 | Msa0035020:CDS | 25.0% |
| ! | AAAGGAGATCAAGAATATAT+AGG | + | chr1_1:63033883-63033902 | Msa0035020:intron | 25.0% |
| ! | AGTGATAGAGTTATTATGAT+TGG | + | chr1_1:63034324-63034343 | Msa0035020:CDS | 25.0% |
| ! | GTTTAAAGATTTAAGGAGAT+TGG | - | chr1_1:63034388-63034407 | None:intergenic | 25.0% |
| ! | CAAACGTGTTTAAAGATTTA+AGG | - | chr1_1:63034395-63034414 | None:intergenic | 25.0% |
| !! | TTAATGCATGTTTGAAATCA+CGG | - | chr1_1:63034517-63034536 | None:intergenic | 25.0% |
| ! | GGTGTTAAATTAATAGGAAT+AGG | + | chr1_1:63034887-63034906 | Msa0035020:three_prime_UTR | 25.0% |
| ! | AAATTAATAGGAATAGGAGA+AGG | + | chr1_1:63034893-63034912 | Msa0035020:three_prime_UTR | 25.0% |
| ! | TGTAATCAACAATGTAGAAT+TGG | + | chr1_1:63034929-63034948 | Msa0035020:three_prime_UTR | 25.0% |
| ATAAAAGATTAGAGAGGAGA+AGG | - | chr1_1:63030966-63030985 | None:intergenic | 30.0% | |
| AGGAATCAATGGAATGAATA+TGG | - | chr1_1:63031031-63031050 | None:intergenic | 30.0% | |
| TAGTAATAGAGAGGAATCAA+TGG | - | chr1_1:63031042-63031061 | None:intergenic | 30.0% | |
| ATGATGATTCATAACCTGAA+TGG | - | chr1_1:63031154-63031173 | None:intergenic | 30.0% | |
| !! | TTTGCTATTCAAGGGAAATT+GGG | - | chr1_1:63031443-63031462 | None:intergenic | 30.0% |
| !!! | TTTTGCTATTCAAGGGAAAT+TGG | - | chr1_1:63031444-63031463 | None:intergenic | 30.0% |
| ! | TCATAAGTGTTTTGTGTTTC+TGG | + | chr1_1:63031934-63031953 | Msa0035020:CDS | 30.0% |
| CAACACAAACATATGATTTC+AGG | - | chr1_1:63032048-63032067 | None:intergenic | 30.0% | |
| CTGAAATCATATGTTTGTGT+TGG | + | chr1_1:63032046-63032065 | Msa0035020:intron | 30.0% | |
| TCTATGTTTACTGCATCAAA+TGG | + | chr1_1:63032405-63032424 | Msa0035020:intron | 30.0% | |
| ! | ACTAAAACTTCAATTTTGGG+GGG | - | chr1_1:63032480-63032499 | None:intergenic | 30.0% |
| !! | TCTTTTGGTAGCATTTGTTA+TGG | + | chr1_1:63033186-63033205 | Msa0035020:CDS | 30.0% |
| TTATGGCTCATTATTTACTG+CGG | + | chr1_1:63033203-63033222 | Msa0035020:CDS | 30.0% | |
| TAACAAATATGCCTATGTTC+AGG | + | chr1_1:63033446-63033465 | Msa0035020:CDS | 30.0% | |
| ACTACTGATAATTACTGAGA+AGG | + | chr1_1:63033500-63033519 | Msa0035020:intron | 30.0% | |
| AGGAATGTGTAAGAATTTGT+CGG | + | chr1_1:63033520-63033539 | Msa0035020:intron | 30.0% | |
| TTCCTTACTCCTTACTATAA+AGG | + | chr1_1:63033596-63033615 | Msa0035020:intron | 30.0% | |
| ATGTTTGTATAGTCAGTTGT+AGG | + | chr1_1:63033756-63033775 | Msa0035020:intron | 30.0% | |
| !! | AATCTCACCTAAGTTGATTT+GGG | + | chr1_1:63033789-63033808 | Msa0035020:intron | 30.0% |
| ! | CTCTTTATTAAGGCTTTTAC+AGG | - | chr1_1:63033830-63033849 | None:intergenic | 30.0% |
| CCTTAATAAAGAGAGTAGAT+CGG | + | chr1_1:63033837-63033856 | Msa0035020:intron | 30.0% | |
| GTGTAAGTTTACCAATTACA+CGG | - | chr1_1:63034084-63034103 | None:intergenic | 30.0% | |
| AAACTTACACAACAATGACA+TGG | + | chr1_1:63034094-63034113 | Msa0035020:intron | 30.0% | |
| TGGTAAAAGCTTCAACAATT+CGG | + | chr1_1:63034155-63034174 | Msa0035020:CDS | 30.0% | |
| AGTTATCAATCCACCAAAAA+TGG | - | chr1_1:63034268-63034287 | None:intergenic | 30.0% | |
| !!! | ATTTTTGGTGGATTGATAAC+TGG | + | chr1_1:63034267-63034286 | Msa0035020:CDS | 30.0% |
| !!! | ATGTAACTTTGTTTTCAGGT+TGG | + | chr1_1:63034573-63034592 | Msa0035020:intron | 30.0% |
| !! | ACCCTTTATTGATTCAAAGA+TGG | + | chr1_1:63034655-63034674 | Msa0035020:CDS | 30.0% |
| CCCATCTTTGAATCAATAAA+GGG | - | chr1_1:63034659-63034678 | None:intergenic | 30.0% | |
| !! | CCCTTTATTGATTCAAAGAT+GGG | + | chr1_1:63034656-63034675 | Msa0035020:CDS | 30.0% |
| TCCCATCTTTGAATCAATAA+AGG | - | chr1_1:63034660-63034679 | None:intergenic | 30.0% | |
| TATAGATACGATCTACACAA+TGG | - | chr1_1:63034847-63034866 | None:intergenic | 30.0% | |
| !! | CAATGGGTTATGTTATGGTA+GGG | - | chr1_1:63030942-63030961 | None:intergenic | 35.0% |
| !! | TCAATGGGTTATGTTATGGT+AGG | - | chr1_1:63030943-63030962 | None:intergenic | 35.0% |
| !! | AAGGTCAATGGGTTATGTTA+TGG | - | chr1_1:63030947-63030966 | None:intergenic | 35.0% |
| AGGCGAATAAAAGATTAGAG+AGG | - | chr1_1:63030972-63030991 | None:intergenic | 35.0% | |
| ! | CTCTAATCTTTTATTCGCCT+TGG | + | chr1_1:63030972-63030991 | Msa0035020:five_prime_UTR | 35.0% |
| GAATGAATATGGAAAAAGGG+TGG | - | chr1_1:63031020-63031039 | None:intergenic | 35.0% | |
| ATGATTCATAACCTGAATGG+CGG | - | chr1_1:63031151-63031170 | None:intergenic | 35.0% | |
| TGTGATTCATTTGATTGCAC+TGG | + | chr1_1:63031671-63031690 | Msa0035020:CDS | 35.0% | |
| GTGATTCATTTGATTGCACT+GGG | + | chr1_1:63031672-63031691 | Msa0035020:CDS | 35.0% | |
| AACATTGATAAGTACACTCC+TGG | + | chr1_1:63031747-63031766 | Msa0035020:CDS | 35.0% | |
| ATAAAGCGGCCAATAAGTTT+CGG | - | chr1_1:63031799-63031818 | None:intergenic | 35.0% | |
| TTTCATCATTTGAGTAGCCT+GGG | - | chr1_1:63031880-63031899 | None:intergenic | 35.0% | |
| ATGTTATATCCGTCATAGAC+AGG | + | chr1_1:63032015-63032034 | Msa0035020:CDS | 35.0% | |
| ! | TCAAGTTGCAATGTTTGGAT+TGG | + | chr1_1:63032212-63032231 | Msa0035020:intron | 35.0% |
| !! | TAAAACTTCAATTTTGGGGG+GGG | - | chr1_1:63032478-63032497 | None:intergenic | 35.0% |
| !! | CTAAAACTTCAATTTTGGGG+GGG | - | chr1_1:63032479-63032498 | None:intergenic | 35.0% |
| CTGTTTATTTGCATTTCCGT+TGG | - | chr1_1:63032512-63032531 | None:intergenic | 35.0% | |
| ACGGAAATGCAAATAAACAG+CGG | + | chr1_1:63032512-63032531 | Msa0035020:intron | 35.0% | |
| ! | ATGAGAAAGTATGCATAGAG+CGG | - | chr1_1:63032564-63032583 | None:intergenic | 35.0% |
| AGTTTGTAGATGAATGTTGC+AGG | + | chr1_1:63032591-63032610 | Msa0035020:intron | 35.0% | |
| ! | TTGCAGGTTCCTAATTTTTG+TGG | + | chr1_1:63032607-63032626 | Msa0035020:intron | 35.0% |
| GAAACCAAGCCACAAAAATT+AGG | - | chr1_1:63032619-63032638 | None:intergenic | 35.0% | |
| AAAAAGCTGTGAAGATGGTT+TGG | + | chr1_1:63032746-63032765 | Msa0035020:CDS | 35.0% | |
| !!! | TCATGTTTGCTGTGCTTTTA+TGG | + | chr1_1:63032803-63032822 | Msa0035020:CDS | 35.0% |
| ! | CTGTATGTTCTTATTTGGAC+TGG | + | chr1_1:63032931-63032950 | Msa0035020:intron | 35.0% |
| !! | GTTCTTATTTGGACTGGTTA+TGG | + | chr1_1:63032937-63032956 | Msa0035020:intron | 35.0% |
| !!! | TCTGTAAGCTTATTTTGGAC+AGG | + | chr1_1:63033030-63033049 | Msa0035020:CDS | 35.0% |
| GTGTTTCTTGTTCTTCTTCA+TGG | + | chr1_1:63033096-63033115 | Msa0035020:CDS | 35.0% | |
| TTTCTTGTTCTTCTTCATGG+TGG | + | chr1_1:63033099-63033118 | Msa0035020:CDS | 35.0% | |
| GATTTCATTAAGGAGTTAGC+AGG | - | chr1_1:63033144-63033163 | None:intergenic | 35.0% | |
| !! | TCGTTTTTCTTTCAGATACG+TGG | + | chr1_1:63033336-63033355 | Msa0035020:intron | 35.0% |
| TGATTTCCTCTTTCATCTTG+TGG | + | chr1_1:63033404-63033423 | Msa0035020:CDS | 35.0% | |
| GGAATGTGTAAGAATTTGTC+GGG | + | chr1_1:63033521-63033540 | Msa0035020:intron | 35.0% | |
| AATTTGTCGGGTAAAGTTCT+TGG | + | chr1_1:63033533-63033552 | Msa0035020:intron | 35.0% | |
| CTCCTTTATAGTAAGGAGTA+AGG | - | chr1_1:63033601-63033620 | None:intergenic | 35.0% | |
| CTTACTCCTTACTATAAAGG+AGG | + | chr1_1:63033599-63033618 | Msa0035020:intron | 35.0% | |
| ACAGTACCTCCTTTATAGTA+AGG | - | chr1_1:63033608-63033627 | None:intergenic | 35.0% | |
| !! | TTACTATAAAGGAGGTACTG+TGG | + | chr1_1:63033607-63033626 | Msa0035020:intron | 35.0% |
| TGTGGAAAATACGAGTTAAG+TGG | + | chr1_1:63033625-63033644 | Msa0035020:intron | 35.0% | |
| ACAACTCATTTGCTTTCCAT+AGG | - | chr1_1:63033693-63033712 | None:intergenic | 35.0% | |
| !! | GAATCTCACCTAAGTTGATT+TGG | + | chr1_1:63033788-63033807 | Msa0035020:intron | 35.0% |
| CCGATCTACTCTCTTTATTA+AGG | - | chr1_1:63033840-63033859 | None:intergenic | 35.0% | |
| TTACACGGATCATGCAATAT+CGG | - | chr1_1:63034069-63034088 | None:intergenic | 35.0% | |
| TATTGCATGATCCGTGTAAT+TGG | + | chr1_1:63034070-63034089 | Msa0035020:intron | 35.0% | |
| CACAACAATGACATGGTTAA+TGG | + | chr1_1:63034101-63034120 | Msa0035020:intron | 35.0% | |
| CACTTACAGATAGCTGTTAA+TGG | + | chr1_1:63034135-63034154 | Msa0035020:intron | 35.0% | |
| !!! | ACTTTGTTTTCAGGTTGGAT+TGG | + | chr1_1:63034578-63034597 | Msa0035020:intron | 35.0% |
| !! | TACATCACCGACTTCAATAT+AGG | + | chr1_1:63034712-63034731 | Msa0035020:CDS | 35.0% |
| ACATGTGAATCCTCATATAG+AGG | - | chr1_1:63034790-63034809 | None:intergenic | 35.0% | |
| TAGGAATAGGAGAAGGTTTA+TGG | + | chr1_1:63034900-63034919 | Msa0035020:three_prime_UTR | 35.0% | |
| GTAGAATTGGATGAGTGAAA+AGG | + | chr1_1:63034942-63034961 | Msa0035020:three_prime_UTR | 35.0% | |
| AAAAGGTCATGTTTACCTCA+TGG | + | chr1_1:63034959-63034978 | Msa0035020:three_prime_UTR | 35.0% | |
| GTTATGTTATGGTAGGGTGA+TGG | - | chr1_1:63030936-63030955 | None:intergenic | 40.0% | |
| TTAGAGAGGAGAAGGTCAAT+GGG | - | chr1_1:63030958-63030977 | None:intergenic | 40.0% | |
| ATTAGAGAGGAGAAGGTCAA+TGG | - | chr1_1:63030959-63030978 | None:intergenic | 40.0% | |
| GAAGGAAAACGTAAGAACCA+AGG | - | chr1_1:63030992-63031011 | None:intergenic | 40.0% | |
| GGAAAAAGGGTGGAAAATGA+AGG | - | chr1_1:63031010-63031029 | None:intergenic | 40.0% | |
| TGTTTCTCCATTCCCAATGA+TGG | + | chr1_1:63031086-63031105 | Msa0035020:exon | 40.0% | |
| AAGAGGGAGAATCCATCATT+GGG | - | chr1_1:63031101-63031120 | None:intergenic | 40.0% | |
| AAAGAGGGAGAATCCATCAT+TGG | - | chr1_1:63031102-63031121 | None:intergenic | 40.0% | |
| GAGGAAGAAGAGGAAAAAGA+GGG | - | chr1_1:63031117-63031136 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAGGAAAAAG+AGG | - | chr1_1:63031118-63031137 | None:intergenic | 40.0% | |
| !! | GTCATTGACTTTCTTTGACC+TGG | + | chr1_1:63031485-63031504 | Msa0035020:intron | 40.0% |
| TTCTGACTCTTCAAGAAACC+AGG | - | chr1_1:63031506-63031525 | None:intergenic | 40.0% | |
| !!! | TGGCATGATGTTTTCTGGTT+AGG | + | chr1_1:63031642-63031661 | Msa0035020:CDS | 40.0% |
| ! | ATTGCACTGGGATTCCTTTT+GGG | + | chr1_1:63031684-63031703 | Msa0035020:CDS | 40.0% |
| CCAATAAGTTTCGGTTAACC+CGG | - | chr1_1:63031790-63031809 | None:intergenic | 40.0% | |
| ! | AACTTATTGGCCGCTTTATG+CGG | + | chr1_1:63031800-63031819 | Msa0035020:CDS | 40.0% |
| ! | ATGGACTTGGTTGTTGTTGT+TGG | + | chr1_1:63031851-63031870 | Msa0035020:CDS | 40.0% |
| ! | TGGACTTGGTTGTTGTTGTT+GGG | + | chr1_1:63031852-63031871 | Msa0035020:CDS | 40.0% |
| CTTTCATCATTTGAGTAGCC+TGG | - | chr1_1:63031881-63031900 | None:intergenic | 40.0% | |
| ACTTATGACAGCCAGATAAG+TGG | - | chr1_1:63031922-63031941 | None:intergenic | 40.0% | |
| ! | TCTGGACTAACCAGATTTTC+TGG | + | chr1_1:63031952-63031971 | Msa0035020:CDS | 40.0% |
| ! | CTGGACTAACCAGATTTTCT+GGG | + | chr1_1:63031953-63031972 | Msa0035020:CDS | 40.0% |
| ! | TGGACTAACCAGATTTTCTG+GGG | + | chr1_1:63031954-63031973 | Msa0035020:CDS | 40.0% |
| ! | AGTTGCAATGTTTGGATTGG+CGG | + | chr1_1:63032215-63032234 | Msa0035020:intron | 40.0% |
| CGGCGAGATTGATAGAATTA+TGG | + | chr1_1:63032235-63032254 | Msa0035020:intron | 40.0% | |
| !! | AAAACTTCAATTTTGGGGGG+GGG | - | chr1_1:63032477-63032496 | None:intergenic | 40.0% |
| ! | TTTTAGTAGTCTCCTGCCAA+CGG | + | chr1_1:63032493-63032512 | Msa0035020:intron | 40.0% |
| TTATTTGCATTTCCGTTGGC+AGG | - | chr1_1:63032508-63032527 | None:intergenic | 40.0% | |
| ! | GCGGTTAGTTCAGTTTCTTA+AGG | + | chr1_1:63032531-63032550 | Msa0035020:intron | 40.0% |
| ! | TGAGAAAGTATGCATAGAGC+GGG | - | chr1_1:63032563-63032582 | None:intergenic | 40.0% |
| ! | GGTTCCTAATTTTTGTGGCT+TGG | + | chr1_1:63032612-63032631 | Msa0035020:intron | 40.0% |
| AGAAAAGAAGCCATGAGGAT+TGG | - | chr1_1:63032693-63032712 | None:intergenic | 40.0% | |
| TCTGCAAAAAGCTGTGAAGA+TGG | + | chr1_1:63032741-63032760 | Msa0035020:CDS | 40.0% | |
| !!! | GTTTGCTGTGCTTTTATGGA+TGG | + | chr1_1:63032807-63032826 | Msa0035020:CDS | 40.0% |
| !! | TGCTTTTATGGATGGCCTTA+TGG | + | chr1_1:63032815-63032834 | Msa0035020:CDS | 40.0% |
| TGGCTTCAAACTTGAGTGAT+GGG | + | chr1_1:63032860-63032879 | Msa0035020:CDS | 40.0% | |
| AATAACAGCGTCATCAGATG+AGG | - | chr1_1:63032987-63033006 | None:intergenic | 40.0% | |
| ACTGTGCATGTTATAGTGTC+TGG | + | chr1_1:63033069-63033088 | Msa0035020:CDS | 40.0% | |
| CTGTGCATGTTATAGTGTCT+GGG | + | chr1_1:63033070-63033089 | Msa0035020:CDS | 40.0% | |
| CATTATTTACTGCGGCTATC+AGG | + | chr1_1:63033211-63033230 | Msa0035020:CDS | 40.0% | |
| TCTTTCAGATACGTGGACTT+AGG | + | chr1_1:63033343-63033362 | Msa0035020:intron | 40.0% | |
| ACAATCTGGTACCTGAACAT+AGG | - | chr1_1:63033460-63033479 | None:intergenic | 40.0% | |
| GTTCTTGGCAGCATCATATT+TGG | + | chr1_1:63033548-63033567 | Msa0035020:intron | 40.0% | |
| !! | TGGTTTCAGCCATTTTCACT+TGG | + | chr1_1:63033568-63033587 | Msa0035020:intron | 40.0% |
| !! | GGTTTCAGCCATTTTCACTT+GGG | + | chr1_1:63033569-63033588 | Msa0035020:intron | 40.0% |
| GGAATACACCCAAGTGAAAA+TGG | - | chr1_1:63033580-63033599 | None:intergenic | 40.0% | |
| GTGGTTGTTGAGACTAATTG+AGG | + | chr1_1:63033644-63033663 | Msa0035020:intron | 40.0% | |
| ATGACTTCAAGTGCTACCTA+TGG | + | chr1_1:63033674-63033693 | Msa0035020:intron | 40.0% | |
| ACACAAGCCCAAATCAACTT+AGG | - | chr1_1:63033799-63033818 | None:intergenic | 40.0% | |
| !! | TAAGTTGATTTGGGCTTGTG+TGG | + | chr1_1:63033798-63033817 | Msa0035020:intron | 40.0% |
| !! | AAGTTGATTTGGGCTTGTGT+GGG | + | chr1_1:63033799-63033818 | Msa0035020:intron | 40.0% |
| TGGGAGTTATTCCAATCAAC+TGG | + | chr1_1:63034189-63034208 | Msa0035020:CDS | 40.0% | |
| GGGAGTTATTCCAATCAACT+GGG | + | chr1_1:63034190-63034209 | Msa0035020:CDS | 40.0% | |
| GGAGTTATTCCAATCAACTG+GGG | + | chr1_1:63034191-63034210 | Msa0035020:CDS | 40.0% | |
| CTTGTGGCATATGATTGTTC+AGG | + | chr1_1:63034222-63034241 | Msa0035020:CDS | 40.0% | |
| !!! | TTCAGGTGCTGTTTTGCTAA+TGG | + | chr1_1:63034239-63034258 | Msa0035020:CDS | 40.0% |
| !!! | TCAGGTGCTGTTTTGCTAAT+GGG | + | chr1_1:63034240-63034259 | Msa0035020:CDS | 40.0% |
| !! | TTGCTAATGGGCACCATTTT+TGG | + | chr1_1:63034252-63034271 | Msa0035020:CDS | 40.0% |
| ! | TTGATAACTGGAACTTGTGC+TGG | + | chr1_1:63034279-63034298 | Msa0035020:CDS | 40.0% |
| CTTCAACGAAATCAGTGTCA+CGG | + | chr1_1:63034474-63034493 | Msa0035020:intron | 40.0% | |
| !!! | TTTTCAGGTTGGATTGGCAA+TGG | + | chr1_1:63034584-63034603 | Msa0035020:intron | 40.0% |
| GAGCACTCCTATATTGAAGT+CGG | - | chr1_1:63034722-63034741 | None:intergenic | 40.0% | |
| TTTCTCGTATAGGGTCATCA+TGG | - | chr1_1:63034764-63034783 | None:intergenic | 40.0% | |
| !!! | TAGAGGCGTTTTCTCGTATA+GGG | - | chr1_1:63034773-63034792 | None:intergenic | 40.0% |
| !!! | ATAGAGGCGTTTTCTCGTAT+AGG | - | chr1_1:63034774-63034793 | None:intergenic | 40.0% |
| GAATAGGAGAAGGTTTATGG+TGG | + | chr1_1:63034903-63034922 | Msa0035020:three_prime_UTR | 40.0% | |
| ! | ATGTTATGGTAGGGTGATGG+TGG | - | chr1_1:63030933-63030952 | None:intergenic | 45.0% |
| GGAGAATCCATCATTGGGAA+TGG | - | chr1_1:63031096-63031115 | None:intergenic | 45.0% | |
| TATGGTGATAGAGTGCATCC+CGG | + | chr1_1:63031559-63031578 | Msa0035020:intron | 45.0% | |
| ! | GATTGCACTGGGATTCCTTT+TGG | + | chr1_1:63031683-63031702 | Msa0035020:CDS | 45.0% |
| ! | TTGCACTGGGATTCCTTTTG+GGG | + | chr1_1:63031685-63031704 | Msa0035020:CDS | 45.0% |
| !! | AAGTACACTCCTGGTCTTAC+CGG | + | chr1_1:63031756-63031775 | Msa0035020:CDS | 45.0% |
| CCGGGTTAACCGAAACTTAT+TGG | + | chr1_1:63031787-63031806 | Msa0035020:CDS | 45.0% | |
| GAATTGGGACTGTTCTTGGA+TGG | + | chr1_1:63031832-63031851 | Msa0035020:CDS | 45.0% | |
| TCACATCCTCACCACTTATC+TGG | + | chr1_1:63031908-63031927 | Msa0035020:CDS | 45.0% | |
| ! | GGACTAACCAGATTTTCTGG+GGG | + | chr1_1:63031955-63031974 | Msa0035020:CDS | 45.0% |
| ! | GACTAACCAGATTTTCTGGG+GGG | + | chr1_1:63031956-63031975 | Msa0035020:CDS | 45.0% |
| GGGCAAATACCTGTCTATGA+CGG | - | chr1_1:63032027-63032046 | None:intergenic | 45.0% | |
| TGTTGGATTGCAGAAGCGAT+TGG | + | chr1_1:63032063-63032082 | Msa0035020:intron | 45.0% | |
| !! | GTTTGGATTAGCGGTGAGTT+TGG | - | chr1_1:63032313-63032332 | None:intergenic | 45.0% |
| !! | AAACTTCAATTTTGGGGGGG+GGG | - | chr1_1:63032476-63032495 | None:intergenic | 45.0% |
| TACGATGGTTCCAATCCTCA+TGG | + | chr1_1:63032680-63032699 | Msa0035020:intron | 45.0% | |
| GGAGAAGAAAAGAAGCCATG+AGG | - | chr1_1:63032698-63032717 | None:intergenic | 45.0% | |
| CAGCATCGTAAATGGAAGTC+TGG | - | chr1_1:63032719-63032738 | None:intergenic | 45.0% | |
| CAGACTTCCATTTACGATGC+TGG | + | chr1_1:63032717-63032736 | Msa0035020:intron | 45.0% | |
| TGCAGAACCAGCATCGTAAA+TGG | - | chr1_1:63032727-63032746 | None:intergenic | 45.0% | |
| !! | TGGATGGCCTTATGGTCATT+TGG | + | chr1_1:63032823-63032842 | Msa0035020:CDS | 45.0% |
| TGCTGCTCCAAATGACCATA+AGG | - | chr1_1:63032833-63032852 | None:intergenic | 45.0% | |
| ! | TTATGGTCATTTGGAGCAGC+AGG | + | chr1_1:63032832-63032851 | Msa0035020:CDS | 45.0% |
| GTGGCTTCAAACTTGAGTGA+TGG | + | chr1_1:63032859-63032878 | Msa0035020:CDS | 45.0% | |
| GGCTTCAAACTTGAGTGATG+GGG | + | chr1_1:63032861-63032880 | Msa0035020:CDS | 45.0% | |
| GCTTCAAACTTGAGTGATGG+GGG | + | chr1_1:63032862-63032881 | Msa0035020:CDS | 45.0% | |
| GCATGTTATAGTGTCTGGGA+TGG | + | chr1_1:63033074-63033093 | Msa0035020:CDS | 45.0% | |
| TCTTCTTCATGGTGGTAGAG+AGG | + | chr1_1:63033107-63033126 | Msa0035020:CDS | 45.0% | |
| CGTGGACTTAGGTCAAAGAT+TGG | + | chr1_1:63033354-63033373 | Msa0035020:CDS | 45.0% | |
| GAGTCTCCACAAGATGAAAG+AGG | - | chr1_1:63033413-63033432 | None:intergenic | 45.0% | |
| ACAATTCGGCTAGAGATGCA+TGG | + | chr1_1:63034169-63034188 | Msa0035020:CDS | 45.0% | |
| CAATTCGGCTAGAGATGCAT+GGG | + | chr1_1:63034170-63034189 | Msa0035020:CDS | 45.0% | |
| ATTCCAATCAACTGGGGTTG+AGG | + | chr1_1:63034197-63034216 | Msa0035020:CDS | 45.0% | |
| !! | CTAATGGGCACCATTTTTGG+TGG | + | chr1_1:63034255-63034274 | Msa0035020:CDS | 45.0% |
| ! | TGGAACTTGTGCTGGTGTTT+GGG | + | chr1_1:63034287-63034306 | Msa0035020:CDS | 45.0% |
| CAAAACCATACCCATGAGCA+TGG | - | chr1_1:63034358-63034377 | None:intergenic | 45.0% | |
| ! | CATGCTCATGGGTATGGTTT+TGG | + | chr1_1:63034356-63034375 | Msa0035020:CDS | 45.0% |
| GATGTAGTGTCTCAGACATC+TGG | - | chr1_1:63034698-63034717 | None:intergenic | 45.0% | |
| ATCATGGAATCGATAGTCCC+TGG | - | chr1_1:63034748-63034767 | None:intergenic | 45.0% | |
| CGAGAAAACGCCTCTATATG+AGG | + | chr1_1:63034777-63034796 | Msa0035020:CDS | 45.0% | |
| TAGGAGAAGGTTTATGGTGG+TGG | + | chr1_1:63034906-63034925 | Msa0035020:three_prime_UTR | 45.0% | |
| GTCATGTTTACCTCATGGCT+TGG | + | chr1_1:63034964-63034983 | Msa0035020:three_prime_UTR | 45.0% | |
| !! | ATTAATTAGTATAATAATTA+GGG | - | chr1_1:63030899-63030918 | None:intergenic | 5.0% |
| !! | TATTAATTAGTATAATAATT+AGG | - | chr1_1:63030900-63030919 | None:intergenic | 5.0% |
| !!! | TATTAAAATTTAGATTTTAA+TGG | + | chr1_1:63034012-63034031 | Msa0035020:intron | 5.0% |
| !! | TTATGGTAGGGTGATGGTGG+TGG | - | chr1_1:63030930-63030949 | None:intergenic | 50.0% |
| AGCGAAGTCAGAGGAAGAAG+AGG | - | chr1_1:63031127-63031146 | None:intergenic | 50.0% | |
| CACGCAGTGAAGTGATGAGA+AGG | - | chr1_1:63031327-63031346 | None:intergenic | 50.0% | |
| ! | TGCACTGGGATTCCTTTTGG+GGG | + | chr1_1:63031686-63031705 | Msa0035020:CDS | 50.0% |
| !! | GGATTCCTTTTGGGGGTTCT+TGG | + | chr1_1:63031693-63031712 | Msa0035020:CDS | 50.0% |
| TGAGACCAAGAACCCCCAAA+AGG | - | chr1_1:63031701-63031720 | None:intergenic | 50.0% | |
| TGGGGGTTCTTGGTCTCAAT+AGG | + | chr1_1:63031703-63031722 | Msa0035020:CDS | 50.0% | |
| !! | AGTACACTCCTGGTCTTACC+GGG | + | chr1_1:63031757-63031776 | Msa0035020:CDS | 50.0% |
| GGTGGAATTGGGACTGTTCT+TGG | + | chr1_1:63031828-63031847 | Msa0035020:CDS | 50.0% | |
| ! | GGACTGTTCTTGGATGGACT+TGG | + | chr1_1:63031838-63031857 | Msa0035020:CDS | 50.0% |
| ! | GTTGTTGTTGTTGGGTTCCC+AGG | + | chr1_1:63031860-63031879 | Msa0035020:CDS | 50.0% |
| TGACAGCCAGATAAGTGGTG+AGG | - | chr1_1:63031917-63031936 | None:intergenic | 50.0% | |
| AAGCAACCCCCCAGAAAATC+TGG | - | chr1_1:63031965-63031984 | None:intergenic | 50.0% | |
| !! | AACTTCAATTTTGGGGGGGG+GGG | - | chr1_1:63032475-63032494 | None:intergenic | 50.0% |
| ! | GATGGTTTGGAATCTTCCCG+AGG | + | chr1_1:63032759-63032778 | Msa0035020:CDS | 50.0% |
| ACACGACACTCTCATGACCT+CGG | - | chr1_1:63032779-63032798 | None:intergenic | 50.0% | |
| ! | ATTTGGAGCAGCAGGTGTTG+TGG | + | chr1_1:63032840-63032859 | Msa0035020:CDS | 50.0% |
| ! | CTGGAACTTGTGCTGGTGTT+TGG | + | chr1_1:63034286-63034305 | Msa0035020:CDS | 50.0% |
| ! | GTGTTTGGGCGTGGGTTAAA+TGG | + | chr1_1:63034301-63034320 | Msa0035020:CDS | 50.0% |
| CATACCCATGAGCATGGATG+TGG | - | chr1_1:63034352-63034371 | None:intergenic | 50.0% | |
| CACATCCATGCTCATGGGTA+TGG | + | chr1_1:63034350-63034369 | Msa0035020:CDS | 50.0% | |
| !! | GGTTGGATTGGCAATGGTTG+TGG | + | chr1_1:63034590-63034609 | Msa0035020:intron | 50.0% |
| !! | TGGATTGGCAATGGTTGTGG+TGG | + | chr1_1:63034593-63034612 | Msa0035020:CDS | 50.0% |
| !! | AATATAGGAGTGCTCGAGCC+AGG | + | chr1_1:63034727-63034746 | Msa0035020:CDS | 50.0% |
| !! | ATATAGGAGTGCTCGAGCCA+GGG | + | chr1_1:63034728-63034747 | Msa0035020:CDS | 50.0% |
| !! | TACCTCATGGCTTGGTGTGT+AGG | + | chr1_1:63034972-63034991 | Msa0035020:three_prime_UTR | 50.0% |
| !! | ACCTCATGGCTTGGTGTGTA+GGG | + | chr1_1:63034973-63034992 | Msa0035020:three_prime_UTR | 50.0% |
| ! | CTTGGTGTGTAGGGATGGAT+GGG | + | chr1_1:63034982-63035001 | Msa0035020:three_prime_UTR | 50.0% |
| ! | AATGGCGGAAGCGAAGTCAG+AGG | - | chr1_1:63031136-63031155 | None:intergenic | 55.0% |
| TGACTTCGCTTCCGCCATTC+AGG | + | chr1_1:63031137-63031156 | Msa0035020:CDS | 55.0% | |
| GATAGAGTGCATCCCGGAGT+AGG | + | chr1_1:63031565-63031584 | Msa0035020:intron | 55.0% | |
| !! | CAGCAGTGAAATGGTGGTGG+CGG | + | chr1_1:63031602-63031621 | Msa0035020:CDS | 55.0% |
| ! | GGCGGTGGCATGATGTTTTC+TGG | + | chr1_1:63031637-63031656 | Msa0035020:CDS | 55.0% |
| GCATGATTCCCGGTAAGACC+AGG | - | chr1_1:63031768-63031787 | None:intergenic | 55.0% | |
| GGTCTTACCGGGAATCATGC+CGG | + | chr1_1:63031768-63031787 | Msa0035020:CDS | 55.0% | |
| GTCTTACCGGGAATCATGCC+GGG | + | chr1_1:63031769-63031788 | Msa0035020:CDS | 55.0% | |
| GGTTAACCCGGCATGATTCC+CGG | - | chr1_1:63031778-63031797 | None:intergenic | 55.0% | |
| TATGCGGCTGCTGGTGGAAT+TGG | + | chr1_1:63031816-63031835 | Msa0035020:CDS | 55.0% | |
| ATGCGGCTGCTGGTGGAATT+GGG | + | chr1_1:63031817-63031836 | Msa0035020:CDS | 55.0% | |
| !! | ACTTCAATTTTGGGGGGGGG+GGG | - | chr1_1:63032474-63032493 | None:intergenic | 55.0% |
| CACGACACTCTCATGACCTC+GGG | - | chr1_1:63032778-63032797 | None:intergenic | 55.0% | |
| GGCTATCAGGACACTGCGAT+GGG | + | chr1_1:63033224-63033243 | Msa0035020:CDS | 55.0% | |
| TATCAGGACACTGCGATGGG+AGG | + | chr1_1:63033227-63033246 | Msa0035020:CDS | 55.0% | |
| GTGCCTCAACCCCAGTTGAT+TGG | - | chr1_1:63034203-63034222 | None:intergenic | 55.0% | |
| ! | AACTGGGGTTGAGGCACTTG+TGG | + | chr1_1:63034206-63034225 | Msa0035020:CDS | 55.0% |
| ! | TTGTGCTGGTGTTTGGGCGT+GGG | + | chr1_1:63034293-63034312 | Msa0035020:CDS | 55.0% |
| TGGCTCCACATCCATGCTCA+TGG | + | chr1_1:63034344-63034363 | Msa0035020:CDS | 55.0% | |
| GGCTCCACATCCATGCTCAT+GGG | + | chr1_1:63034345-63034364 | Msa0035020:CDS | 55.0% | |
| TCCCTACACACCAAGCCATG+AGG | - | chr1_1:63034977-63034996 | None:intergenic | 55.0% | |
| !! | CATGGCTTGGTGTGTAGGGA+TGG | + | chr1_1:63034977-63034996 | Msa0035020:three_prime_UTR | 55.0% |
| !! | GCTTGGTGTGTAGGGATGGA+TGG | + | chr1_1:63034981-63035000 | Msa0035020:three_prime_UTR | 55.0% |
| GCATCCCGGAGTAGGAGAAG+TGG | + | chr1_1:63031573-63031592 | Msa0035020:CDS | 60.0% | |
| TCCCGGAGTAGGAGAAGTGG+CGG | + | chr1_1:63031576-63031595 | Msa0035020:CDS | 60.0% | |
| CGGCAGCAGTGAAATGGTGG+TGG | + | chr1_1:63031599-63031618 | Msa0035020:CDS | 60.0% | |
| !! | TGGTGGCGGCAGAACAATCG+CGG | + | chr1_1:63031616-63031635 | Msa0035020:CDS | 60.0% |
| CCACCAGCAGCCGCATAAAG+CGG | - | chr1_1:63031813-63031832 | None:intergenic | 60.0% | |
| ! | TGGGGGGTTGCTTTCGCTGT+TGG | + | chr1_1:63031972-63031991 | Msa0035020:CDS | 60.0% |
| !! | TTCAATTTTGGGGGGGGGGG+GGG | - | chr1_1:63032472-63032491 | None:intergenic | 60.0% |
| !! | CTTCAATTTTGGGGGGGGGG+GGG | - | chr1_1:63032473-63032492 | None:intergenic | 60.0% |
| ! | ACTTGAGTGATGGGGGACGC+TGG | + | chr1_1:63032869-63032888 | Msa0035020:CDS | 60.0% |
| GCTGGTGGCTTCTTGTGGTG+AGG | + | chr1_1:63032887-63032906 | Msa0035020:intron | 60.0% | |
| GGTGGCTTCTTGTGGTGAGG+TGG | + | chr1_1:63032890-63032909 | Msa0035020:intron | 60.0% | |
| CGGCTATCAGGACACTGCGA+TGG | + | chr1_1:63033223-63033242 | Msa0035020:CDS | 60.0% | |
| ! | CTTGTGCTGGTGTTTGGGCG+TGG | + | chr1_1:63034292-63034311 | Msa0035020:CDS | 60.0% |
| GCCGCCACTTCTCCTACTCC+GGG | - | chr1_1:63031580-63031599 | None:intergenic | 65.0% | |
| CGCCGCCACTTCTCCTACTC+CGG | - | chr1_1:63031581-63031600 | None:intergenic | 65.0% | |
| CGGAGTAGGAGAAGTGGCGG+CGG | + | chr1_1:63031579-63031598 | Msa0035020:CDS | 65.0% | |
| TGGCGGCGGCAGCAGTGAAA+TGG | + | chr1_1:63031593-63031612 | Msa0035020:CDS | 65.0% | |
| CGGCGGCAGCAGTGAAATGG+TGG | + | chr1_1:63031596-63031615 | Msa0035020:CDS | 65.0% | |
| TGGCGGCAGAACAATCGCGG+CGG | + | chr1_1:63031619-63031638 | Msa0035020:CDS | 65.0% | |
| ! | TGGCCGCTTTATGCGGCTGC+TGG | + | chr1_1:63031807-63031826 | Msa0035020:CDS | 65.0% |
| CCGCTTTATGCGGCTGCTGG+TGG | + | chr1_1:63031810-63031829 | Msa0035020:CDS | 65.0% | |
| !! | TCAATTTTGGGGGGGGGGGG+GGG | - | chr1_1:63032471-63032490 | None:intergenic | 65.0% |
| ! | TGAGTGATGGGGGACGCTGG+TGG | + | chr1_1:63032872-63032891 | Msa0035020:CDS | 65.0% |
| GGGACGCTGGTGGCTTCTTG+TGG | + | chr1_1:63032882-63032901 | Msa0035020:CDS | 65.0% | |
| CGGCAGAACAATCGCGGCGG+TGG | + | chr1_1:63031622-63031641 | Msa0035020:CDS | 70.0% | |
| !! | AATTTTGGGGGGGGGGGGGG+GGG | - | chr1_1:63032469-63032488 | None:intergenic | 70.0% |
| !! | CAATTTTGGGGGGGGGGGGG+GGG | - | chr1_1:63032470-63032489 | None:intergenic | 70.0% |
| !! | ATTTTGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032468-63032487 | None:intergenic | 75.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032467-63032486 | None:intergenic | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032466-63032485 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032465-63032484 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr1_1:63032464-63032483 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63030840 | 63035102 | 63030840 | ID=Msa0035020;Name=Msa0035020 |
| chr1_1 | mRNA | 63030840 | 63035102 | 63030840 | ID=Msa0035020-mRNA-1;Parent=Msa0035020;Name=Msa0035020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=262|1|1|1|1|1|7|305|496 |
| chr1_1 | exon | 63030840 | 63031158 | 63030840 | ID=Msa0035020-mRNA-1:exon:20006;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63031570 | 63032036 | 63031570 | ID=Msa0035020-mRNA-1:exon:20007;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63032720 | 63032903 | 63032720 | ID=Msa0035020-mRNA-1:exon:20008;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63033024 | 63033248 | 63033024 | ID=Msa0035020-mRNA-1:exon:20009;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63033351 | 63033467 | 63033351 | ID=Msa0035020-mRNA-1:exon:20010;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63034144 | 63034377 | 63034144 | ID=Msa0035020-mRNA-1:exon:20011;Parent=Msa0035020-mRNA-1 |
| chr1_1 | exon | 63034591 | 63035102 | 63034591 | ID=Msa0035020-mRNA-1:exon:20012;Parent=Msa0035020-mRNA-1 |
| chr1_1 | five_prime_UTR | 63030840 | 63031101 | 63030840 | ID=Msa0035020-mRNA-1:five_prime_utr;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63031102 | 63031158 | 63031102 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63031570 | 63032036 | 63031570 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63032720 | 63032903 | 63032720 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63033024 | 63033248 | 63033024 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63033351 | 63033467 | 63033351 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63034144 | 63034377 | 63034144 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | CDS | 63034591 | 63034797 | 63034591 | ID=Msa0035020-mRNA-1:cds;Parent=Msa0035020-mRNA-1 |
| chr1_1 | three_prime_UTR | 63034798 | 63035102 | 63034798 | ID=Msa0035020-mRNA-1:three_prime_utr;Parent=Msa0035020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
