Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462850 | PNX73058.1 | 85.307 | 456 | 67 | 0 | 1 | 456 | 1 | 456 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462850 | sp|Q9M0E1|FBL77_ARATH | 45.952 | 457 | 231 | 6 | 1 | 452 | 1 | 446 | 3.70e-133 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462850 | A0A2K3L3E2 | 85.307 | 456 | 67 | 0 | 1 | 456 | 1 | 456 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1169140 | Msa1462850 | 0.809006 | 2.341994e-50 | -8.615850e-47 |
| Msa0573360 | Msa1462850 | 0.985272 | 4.711607e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462850 | MtrunA17_Chr8g0389391 | 93.796 | 274 | 17 | 0 | 48 | 321 | 1 | 274 | 1.80e-176 | 495 |
| Msa1462850 | MtrunA17_Chr8g0389401 | 88.776 | 98 | 11 | 0 | 359 | 456 | 1 | 98 | 1.03e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462850 | AT4G29420.1 | 45.952 | 457 | 231 | 6 | 1 | 452 | 1 | 446 | 3.76e-134 | 394 |
Find 134 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTCTCTGTTTCTGATTTC+TGG | -0.102421 | tig0042682:-5145 | Msa1462850:CDS |
| CTTAAGGAACTTAATCTTAT+TGG | 0.148001 | tig0042682:-4052 | Msa1462850:CDS |
| TCTGAACATATGTATATTCT+TGG | 0.209320 | tig0042682:-2984 | Msa1462850:three_prime_UTR |
| GATGGCATCTAGTGTGTTTA+AGG | 0.212657 | tig0042682:-3293 | Msa1462850:exon |
| CGCAGGGTAAGTTTGGAAAA+TGG | 0.222783 | tig0042682:-3563 | Msa1462850:CDS |
| TTCAAATGCTCCTCTTTCTT+TGG | 0.250922 | tig0042682:-3966 | Msa1462850:CDS |
| TTAGATGGAGATGGGGAATA+TGG | 0.260868 | tig0042682:-3346 | Msa1462850:CDS |
| TTCTTTCCGCAGGGTAAGTT+TGG | 0.275948 | tig0042682:-3570 | Msa1462850:CDS |
| ATTTCTGGGTTCAATCTTGT+TGG | 0.315218 | tig0042682:-5130 | Msa1462850:CDS |
| GCTCTCTGTTTCTGATTTCT+GGG | 0.347427 | tig0042682:-5144 | Msa1462850:CDS |
| AACATAAGGTATCTAAGTTT+AGG | 0.356561 | tig0042682:-3620 | Msa1462850:CDS |
| AGGCTATGGTTTGGTGCAAT+TGG | 0.363155 | tig0042682:-4200 | Msa1462850:CDS |
| AGATTAAGTTCCTTAAGGTT+AGG | 0.364458 | tig0042682:+4058 | None:intergenic |
| ACAGAGAGAGTTGTAGAGGT+TGG | 0.367243 | tig0042682:-3695 | Msa1462850:CDS |
| TACAAACTCAAGAGTCAAAT+TGG | 0.367246 | tig0042682:+4123 | None:intergenic |
| TACTTGTTTCCCTAACCTTA+AGG | 0.368816 | tig0042682:-4068 | Msa1462850:CDS |
| AACGCCACTTCTAGTTAATC+TGG | 0.369392 | tig0042682:+3077 | None:intergenic |
| CAATAAGATTAAGTTCCTTA+AGG | 0.377361 | tig0042682:+4053 | None:intergenic |
| AGAGAGCGACTTAATCGAAT+TGG | 0.381163 | tig0042682:+5160 | None:intergenic |
| AAACTTAGATACCTTATGTT+GGG | 0.381371 | tig0042682:+3623 | None:intergenic |
| GTTTGGTGCAATTGGAGGTT+AGG | 0.383923 | tig0042682:-4192 | Msa1462850:CDS |
| ATTTCAATTTCATTCAAGAT+TGG | 0.385697 | tig0042682:-5196 | Msa1462850:CDS |
| GACTCTTGAGTTTGTAAGAT+TGG | 0.385958 | tig0042682:-4116 | Msa1462850:CDS |
| GTTGATCAAGTAGGAGAGTT+TGG | 0.393214 | tig0042682:-3671 | Msa1462850:CDS |
| GTGATGAGGTGCTTGGTATC+TGG | 0.398273 | tig0042682:+5356 | None:intergenic |
| GATTAAGTTCCTTAAGGTTA+GGG | 0.398337 | tig0042682:+4059 | None:intergenic |
| GATGCTGATCCTTGTGCTGC+TGG | 0.400589 | tig0042682:-3407 | Msa1462850:CDS |
| ATGGTGACGGATTCAAGATT+GGG | 0.404295 | tig0042682:+5293 | None:intergenic |
| ATCTAGTGTGTTTAAGGAAA+AGG | 0.413335 | tig0042682:-3287 | Msa1462850:exon |
| GTCGGTCTTTGAATTGTTGT+AGG | 0.416315 | tig0042682:-3260 | Msa1462850:three_prime_UTR |
| AGAAGGAATCAAGGATACTT+TGG | 0.419448 | tig0042682:-3321 | Msa1462850:CDS |
| GCAAATTCCCTGGAGTTAGA+TGG | 0.420453 | tig0042682:-3361 | Msa1462850:CDS |
| TGAATTATTTCCCCAACATA+AGG | 0.424575 | tig0042682:-3634 | Msa1462850:CDS |
| GGTGTTAGAAATTCCTTCAA+TGG | 0.424696 | tig0042682:-5543 | Msa1462850:exon |
| AGGTGTGAGAGATTAATCTT+AGG | 0.425607 | tig0042682:+4010 | None:intergenic |
| GTATCTAAGTTTAGGTTATG+AGG | 0.429251 | tig0042682:-3612 | Msa1462850:CDS |
| CCGACCATTGACAAGTTTGA+AGG | 0.432550 | tig0042682:+3990 | None:intergenic |
| TTACAGATTGTGTTACAGTT+AGG | 0.435675 | tig0042682:-3231 | Msa1462850:three_prime_UTR |
| GCAGGGTAAGTTTGGAAAAT+GGG | 0.438676 | tig0042682:-3562 | Msa1462850:CDS |
| GATGGTGACGGATTCAAGAT+TGG | 0.439228 | tig0042682:+5292 | None:intergenic |
| TTTGGATAAATGCACCCTCC+TGG | 0.440415 | tig0042682:-3456 | Msa1462850:CDS |
| TAAGTTTAGGTTATGAGGCT+TGG | 0.443271 | tig0042682:-3607 | Msa1462850:CDS |
| GAACTTAATCTTATTGGTGT+TGG | 0.446999 | tig0042682:-4046 | Msa1462850:CDS |
| CCCCATCTCCATCTAACTCC+AGG | 0.448635 | tig0042682:+3353 | None:intergenic |
| CTTAATCTTATTGGTGTTGG+AGG | 0.450290 | tig0042682:-4043 | Msa1462850:CDS |
| TCGTAAGTGTAGTTCAAACT+AGG | 0.452991 | tig0042682:-3103 | Msa1462850:three_prime_UTR |
| CAAGAGTAAACTCAATTTCA+AGG | 0.453685 | tig0042682:+3495 | None:intergenic |
| ATCTGATGATCTTCACCTTA+CGG | 0.465937 | tig0042682:-5219 | Msa1462850:CDS |
| TTGACAAAGAAGGTGCTTCA+AGG | 0.471175 | tig0042682:+3882 | None:intergenic |
| TTTGAACTACACTTACGAAA+AGG | 0.480585 | tig0042682:+3108 | None:intergenic |
| GAGGTTGGAGTTGATCAAGT+AGG | 0.483396 | tig0042682:-3680 | Msa1462850:CDS |
| TTGTGCTACAGGCTATGGTT+TGG | 0.489604 | tig0042682:-4209 | Msa1462850:intron |
| CCCTGGAGTTAGATGGAGAT+GGG | 0.491028 | tig0042682:-3354 | Msa1462850:CDS |
| CTATGGTTTGGTGCAATTGG+AGG | 0.491781 | tig0042682:-4197 | Msa1462850:CDS |
| TTCGGAGGAAGCGGAGTTGA+GGG | 0.493295 | tig0042682:+5433 | None:intergenic |
| TCTAGTGTGTTTAAGGAAAA+GGG | 0.495016 | tig0042682:-3286 | Msa1462850:exon |
| AAGAACAGAGAGAGTTGTAG+AGG | 0.501443 | tig0042682:-3699 | Msa1462850:CDS |
| GAGAAGGAGGTTCTTGAAAA+CGG | 0.503343 | tig0042682:+5322 | None:intergenic |
| TGATGGAGAGTTCTTTCCGC+AGG | 0.504774 | tig0042682:-3580 | Msa1462850:CDS |
| GAGGGTAGATTCTCCATTGA+AGG | 0.510419 | tig0042682:+5530 | None:intergenic |
| CGCATTCCGCTTCAAGCTGA+AGG | 0.511737 | tig0042682:+3795 | None:intergenic |
| AAGGATACTTTGGTTTCAGA+TGG | 0.512935 | tig0042682:-3311 | Msa1462850:CDS |
| TAAACTTAGATACCTTATGT+TGG | 0.515466 | tig0042682:+3622 | None:intergenic |
| CTTCGGAGGAAGCGGAGTTG+AGG | 0.516753 | tig0042682:+5432 | None:intergenic |
| TTGGATAAATGCACCCTCCT+GGG | 0.518672 | tig0042682:-3455 | Msa1462850:CDS |
| AACGCTTGGTTAGCTGTGGA+TGG | 0.519585 | tig0042682:-4169 | Msa1462850:CDS |
| CGAACGAACTTCGGAGGAAG+CGG | 0.523808 | tig0042682:+5424 | None:intergenic |
| AATATGGAAAGAAGGAATCA+AGG | 0.525029 | tig0042682:-3330 | Msa1462850:CDS |
| CACACCTTCAAACTTGTCAA+TGG | 0.525428 | tig0042682:-3994 | Msa1462850:CDS |
| ATTTCTACAACCAGCGGAGA+GGG | 0.527269 | tig0042682:+5512 | None:intergenic |
| TTCATCTTCAAAGTCGTCAA+AGG | 0.528968 | tig0042682:+5241 | None:intergenic |
| AGATGGAAATCAACAAGACT+TGG | 0.529529 | tig0042682:+3932 | None:intergenic |
| GAGGGTCAACGAACGAACTT+CGG | 0.530729 | tig0042682:+5415 | None:intergenic |
| ACGATCAACGCCGATGGTGA+CGG | 0.532340 | tig0042682:+5280 | None:intergenic |
| CCTTCAAACTTGTCAATGGT+CGG | 0.533893 | tig0042682:-3990 | Msa1462850:CDS |
| TGATTTGAGGTAACGAGAGA+TGG | 0.534176 | tig0042682:+5385 | None:intergenic |
| ATTGTGTTACAGTTAGGAGT+AGG | 0.538559 | tig0042682:-3225 | Msa1462850:three_prime_UTR |
| CTAACAAGTGGAAGAGATGA+GGG | 0.540516 | tig0042682:+5088 | None:intergenic |
| GAGTCTGCATCTTGCTAGAT+CGG | 0.541109 | tig0042682:+5466 | None:intergenic |
| TTATGAGGCTTGGCTTGTGA+TGG | 0.541430 | tig0042682:-3597 | Msa1462850:CDS |
| GGAGAATCTACCCTCTCCGC+TGG | 0.541471 | tig0042682:-5522 | Msa1462850:CDS |
| AGATGGGGAATATGGAAAGA+AGG | 0.543662 | tig0042682:-3338 | Msa1462850:CDS |
| GTGTGCAGAAGCAAATTCCC+TGG | 0.546248 | tig0042682:-3371 | Msa1462850:CDS |
| GCAGATATAACCAAAGAAAG+AGG | 0.547218 | tig0042682:+3956 | None:intergenic |
| TCATCTTCAAAGTCGTCAAA+GGG | 0.547953 | tig0042682:+5242 | None:intergenic |
| GAAAGGGGTGATGAGGTGCT+TGG | 0.550156 | tig0042682:+5349 | None:intergenic |
| GAAACCAGATTAACTAGAAG+TGG | 0.554823 | tig0042682:-3081 | Msa1462850:three_prime_UTR |
| AGATTAACTAGAAGTGGCGT+TGG | 0.555583 | tig0042682:-3075 | Msa1462850:three_prime_UTR |
| TTGTGTTACAGTTAGGAGTA+GGG | 0.557446 | tig0042682:-3224 | Msa1462850:three_prime_UTR |
| TCCCTGGAGTTAGATGGAGA+TGG | 0.559224 | tig0042682:-3355 | Msa1462850:CDS |
| AATTGGAGGTTAGGAACGCT+TGG | 0.559456 | tig0042682:-4183 | Msa1462850:CDS |
| GACGTTTCTCTGTTCATCCA+CGG | 0.559987 | tig0042682:-3431 | Msa1462850:CDS |
| ATATACAAATATATATGAAG+TGG | 0.562035 | tig0042682:+3043 | None:intergenic |
| TAGGCTTGACACACTTGAGA+TGG | 0.566419 | tig0042682:+3915 | None:intergenic |
| GTAAGTTTGGAAAATGGGAC+TGG | 0.568508 | tig0042682:-3557 | Msa1462850:CDS |
| TGAACAGAGAAACGTCTCCC+AGG | 0.569762 | tig0042682:+3438 | None:intergenic |
| ATCTCAAGTGTGTCAAGCCT+AGG | 0.572917 | tig0042682:-3913 | Msa1462850:CDS |
| TAGGAACGCTTGGTTAGCTG+TGG | 0.580545 | tig0042682:-4173 | Msa1462850:CDS |
| TATCTGGTGAACGTGATTTG+AGG | 0.581565 | tig0042682:+5372 | None:intergenic |
| ACGAGAGATGGAACAGATGA+GGG | 0.582688 | tig0042682:+5397 | None:intergenic |
| AATCTTGAATCCGTCACCAT+CGG | 0.590717 | tig0042682:-5290 | Msa1462850:CDS |
| GAATGAAATTGAAATCCGTA+AGG | 0.594296 | tig0042682:+5204 | None:intergenic |
| AACGAGAGATGGAACAGATG+AGG | 0.597347 | tig0042682:+5396 | None:intergenic |
| CCCATCTCCATCTAACTCCA+GGG | 0.598276 | tig0042682:+3354 | None:intergenic |
| AACTTAGATACCTTATGTTG+GGG | 0.600732 | tig0042682:+3624 | None:intergenic |
| AGACTGAAGTTTGACAAAGA+AGG | 0.601585 | tig0042682:+3872 | None:intergenic |
| ACTAACAAGTGGAAGAGATG+AGG | 0.602954 | tig0042682:+5087 | None:intergenic |
| AACAACACGCATCGTGATCG+TGG | 0.606110 | tig0042682:-5567 | Msa1462850:five_prime_UTR |
| TAAGTTTGGAAAATGGGACT+GGG | 0.606420 | tig0042682:-3556 | Msa1462850:CDS |
| GCTTCAAGGAAAAGCAACCT+AGG | 0.609348 | tig0042682:+3896 | None:intergenic |
| TGGTGACGGATTCAAGATTG+GGG | 0.614137 | tig0042682:+5294 | None:intergenic |
| ATGAGATTTCCAGCAGCACA+AGG | 0.623043 | tig0042682:+3398 | None:intergenic |
| CTAGATCGGTTGAGTCGTTG+AGG | 0.623467 | tig0042682:+5480 | None:intergenic |
| CAGAGAAACGTCTCCCAGGA+GGG | 0.629157 | tig0042682:+3442 | None:intergenic |
| CTTAGAATTTCTACAACCAG+CGG | 0.636022 | tig0042682:+5506 | None:intergenic |
| AGAGCTTGTTGCACATATCG+TGG | 0.636306 | tig0042682:-3519 | Msa1462850:CDS |
| GATGGAGAGTTCTTTCCGCA+GGG | 0.636451 | tig0042682:-3579 | Msa1462850:CDS |
| GTTTGTAAGATTGGATGATG+AGG | 0.640974 | tig0042682:-4107 | Msa1462850:CDS |
| GTTTAAGGAAAAGGGAGAGT+CGG | 0.642281 | tig0042682:-3278 | Msa1462850:three_prime_UTR |
| AAGAGAACGATCAACGCCGA+TGG | 0.643423 | tig0042682:+5274 | None:intergenic |
| ACAATGCCTTCAGCTTGAAG+CGG | 0.645681 | tig0042682:-3801 | Msa1462850:CDS |
| GATCGGTTGAGTCGTTGAGG+CGG | 0.655845 | tig0042682:+5483 | None:intergenic |
| GGTCAACGAACGAACTTCGG+AGG | 0.658236 | tig0042682:+5418 | None:intergenic |
| CCTGGAGTTAGATGGAGATG+GGG | 0.661275 | tig0042682:-3353 | Msa1462850:CDS |
| TTAATCGAATTGGAAAGCGA+AGG | 0.664500 | tig0042682:+5170 | None:intergenic |
| AATTTCTACAACCAGCGGAG+AGG | 0.665838 | tig0042682:+5511 | None:intergenic |
| GGTGACGGATTCAAGATTGG+GGG | 0.683900 | tig0042682:+5295 | None:intergenic |
| ACAGAGAAACGTCTCCCAGG+AGG | 0.695142 | tig0042682:+3441 | None:intergenic |
| CACAAGGATCAGCATCACCG+TGG | 0.702098 | tig0042682:+3414 | None:intergenic |
| TAACAAGTGGAAGAGATGAG+GGG | 0.706106 | tig0042682:+5089 | None:intergenic |
| AACACGCATCGTGATCGTGG+TGG | 0.711865 | tig0042682:-5564 | Msa1462850:five_prime_UTR |
| GTCTCTCTACAACAACACAA+TGG | 0.730203 | tig0042682:+3741 | None:intergenic |
| ATATGTTCAGAACAAGTGAG+CGG | 0.731446 | tig0042682:+2996 | None:intergenic |
| GAAAGAACAAGTGAACAACA+AGG | 0.767673 | tig0042682:+2952 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTAAAGATATTTT+AGG | - | tig0042682:3825-3844 | Msa1462850:CDS | 10.0% |
| !!! | TATCTTTAAAAATATCTACT+TGG | + | tig0042682:3821-3840 | None:intergenic | 15.0% |
| !! | TATTGTAGATGATTAAAAAT+AGG | + | tig0042682:4023-4042 | None:intergenic | 15.0% |
| !! | ATATACAAATATATATGAAG+TGG | + | tig0042682:5522-5541 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTCTGTCTTAAA+TGG | + | tig0042682:2913-2932 | None:intergenic | 20.0% |
| !! | ATTTCAATTTCATTCAAGAT+TGG | - | tig0042682:3366-3385 | Msa1462850:CDS | 20.0% |
| !! | AATGGACAATAAATAATCAA+AGG | + | tig0042682:3521-3540 | None:intergenic | 20.0% |
| !! | GTATAAACTCAATTCTAAAT+TGG | + | tig0042682:3643-3662 | None:intergenic | 20.0% |
| !! | TAATCATCTACAATAGTTAT+AGG | - | tig0042682:4028-4047 | Msa1462850:CDS | 20.0% |
| !! | AATCATCTACAATAGTTATA+GGG | - | tig0042682:4029-4048 | Msa1462850:CDS | 20.0% |
| !! | CATCAATCTATTATAACTAT+GGG | + | tig0042682:4224-4243 | None:intergenic | 20.0% |
| !!! | AGATTTTGAATAAATTGTGT+TGG | - | tig0042682:5369-5388 | Msa1462850:CDS | 20.0% |
| !! | CTCTATCATATCACATTTTT+AGG | + | tig0042682:3857-3876 | None:intergenic | 25.0% |
| ! | AAAATGTGATATGATAGAGT+CGG | - | tig0042682:3858-3877 | Msa1462850:CDS | 25.0% |
| ! | CAGCTATAATAGATAATTGA+CGG | - | tig0042682:3957-3976 | Msa1462850:CDS | 25.0% |
| ! | GCATCAATCTATTATAACTA+TGG | + | tig0042682:4225-4244 | None:intergenic | 25.0% |
| ! | GTAAAAAGACTTTACATTGA+TGG | - | tig0042682:4246-4265 | Msa1462850:intron | 25.0% |
| !!! | ATCCTTTAGAGTTATATTTG+TGG | - | tig0042682:4283-4302 | Msa1462850:intron | 25.0% |
| ! | GATATGAAACTATTAGCAAA+AGG | + | tig0042682:4331-4350 | None:intergenic | 25.0% |
| ! | CAATAAGATTAAGTTCCTTA+AGG | + | tig0042682:4512-4531 | None:intergenic | 25.0% |
| ! | CTTAAGGAACTTAATCTTAT+TGG | - | tig0042682:4510-4529 | Msa1462850:intron | 25.0% |
| ! | AAACTTAGATACCTTATGTT+GGG | + | tig0042682:4942-4961 | None:intergenic | 25.0% |
| ! | TAAACTTAGATACCTTATGT+TGG | + | tig0042682:4943-4962 | None:intergenic | 25.0% |
| !! | AACATAAGGTATCTAAGTTT+AGG | - | tig0042682:4942-4961 | Msa1462850:intron | 25.0% |
| !!! | TGCATTTATTTTCTCTGTTT+TGG | - | tig0042682:5088-5107 | Msa1462850:intron | 25.0% |
| ! | TCTGAACATATGTATATTCT+TGG | - | tig0042682:5578-5597 | Msa1462850:five_prime_UTR | 25.0% |
| !!! | TCTTGAAAACGGTTTTGAAA+GGG | + | tig0042682:3232-3251 | None:intergenic | 30.0% |
| !!! | TTCTTGAAAACGGTTTTGAA+AGG | + | tig0042682:3233-3252 | None:intergenic | 30.0% |
| GAATGAAATTGAAATCCGTA+AGG | + | tig0042682:3361-3380 | None:intergenic | 30.0% | |
| TAGCATAATTGCAACTACAA+TGG | + | tig0042682:3539-3558 | None:intergenic | 30.0% | |
| ! | ATTTCTAATTTTCTATGCCG+TGG | - | tig0042682:3753-3772 | Msa1462850:CDS | 30.0% |
| !! | TGTAAAGTTTTATACCTCCA+CGG | + | tig0042682:3773-3792 | None:intergenic | 30.0% |
| TTGGCATGATTAGATTTGAT+AGG | + | tig0042682:3802-3821 | None:intergenic | 30.0% | |
| ! | CAACAGTGTAAAACCTTTTT+AGG | + | tig0042682:3901-3920 | None:intergenic | 30.0% |
| ! | CTAAAAAGGTTTTACACTGT+TGG | - | tig0042682:3899-3918 | Msa1462850:CDS | 30.0% |
| ! | GCTGCTAGATGATTTAAAAT+AGG | + | tig0042682:3941-3960 | None:intergenic | 30.0% |
| AGATAATTGACGGTGTAAAA+AGG | - | tig0042682:3967-3986 | Msa1462850:CDS | 30.0% | |
| GTTTGTGTAATAAAGTGCAT+TGG | + | tig0042682:4139-4158 | None:intergenic | 30.0% | |
| TACAAACTCAAGAGTCAAAT+TGG | + | tig0042682:4442-4461 | None:intergenic | 30.0% | |
| GATTAAGTTCCTTAAGGTTA+GGG | + | tig0042682:4506-4525 | None:intergenic | 30.0% | |
| AGATTAAGTTCCTTAAGGTT+AGG | + | tig0042682:4507-4526 | None:intergenic | 30.0% | |
| GAACTTAATCTTATTGGTGT+TGG | - | tig0042682:4516-4535 | Msa1462850:intron | 30.0% | |
| TGAATTATTTCCCCAACATA+AGG | - | tig0042682:4928-4947 | Msa1462850:intron | 30.0% | |
| AACTTAGATACCTTATGTTG+GGG | + | tig0042682:4941-4960 | None:intergenic | 30.0% | |
| ! | GTATCTAAGTTTAGGTTATG+AGG | - | tig0042682:4950-4969 | Msa1462850:intron | 30.0% |
| CAAGAGTAAACTCAATTTCA+AGG | + | tig0042682:5070-5089 | None:intergenic | 30.0% | |
| AATATGGAAAGAAGGAATCA+AGG | - | tig0042682:5232-5251 | Msa1462850:CDS | 30.0% | |
| ATCTAGTGTGTTTAAGGAAA+AGG | - | tig0042682:5275-5294 | Msa1462850:CDS | 30.0% | |
| TCTAGTGTGTTTAAGGAAAA+GGG | - | tig0042682:5276-5295 | Msa1462850:CDS | 30.0% | |
| TTACAGATTGTGTTACAGTT+AGG | - | tig0042682:5331-5350 | Msa1462850:CDS | 30.0% | |
| TTTGAACTACACTTACGAAA+AGG | + | tig0042682:5457-5476 | None:intergenic | 30.0% | |
| GGTGTTAGAAATTCCTTCAA+TGG | - | tig0042682:3019-3038 | Msa1462850:three_prime_UTR | 35.0% | |
| CTTAGAATTTCTACAACCAG+CGG | + | tig0042682:3059-3078 | None:intergenic | 35.0% | |
| !!! | CTTGAAAACGGTTTTGAAAG+GGG | + | tig0042682:3231-3250 | None:intergenic | 35.0% |
| TCATCTTCAAAGTCGTCAAA+GGG | + | tig0042682:3323-3342 | None:intergenic | 35.0% | |
| TTCATCTTCAAAGTCGTCAA+AGG | + | tig0042682:3324-3343 | None:intergenic | 35.0% | |
| ATCTGATGATCTTCACCTTA+CGG | - | tig0042682:3343-3362 | Msa1462850:CDS | 35.0% | |
| TTAATCGAATTGGAAAGCGA+AGG | + | tig0042682:3395-3414 | None:intergenic | 35.0% | |
| ! | ATTTCTGGGTTCAATCTTGT+TGG | - | tig0042682:3432-3451 | Msa1462850:CDS | 35.0% |
| ATAAGAAGCTGACTAACAAG+TGG | + | tig0042682:3489-3508 | None:intergenic | 35.0% | |
| TCAAATGTTTCAGAAGTCTC+TGG | + | tig0042682:3587-3606 | None:intergenic | 35.0% | |
| ATATGATAGAGTCGGTTGAT+CGG | - | tig0042682:3866-3885 | Msa1462850:CDS | 35.0% | |
| CGCCACAAATATAACTCTAA+AGG | + | tig0042682:4288-4307 | None:intergenic | 35.0% | |
| TAGAGTTATATTTGTGGCGT+TGG | - | tig0042682:4289-4308 | Msa1462850:intron | 35.0% | |
| TTTCATATCCTTTGTGCTAC+AGG | - | tig0042682:4342-4361 | Msa1462850:intron | 35.0% | |
| GACTCTTGAGTTTGTAAGAT+TGG | - | tig0042682:4446-4465 | Msa1462850:intron | 35.0% | |
| GTTTGTAAGATTGGATGATG+AGG | - | tig0042682:4455-4474 | Msa1462850:intron | 35.0% | |
| TACTTGTTTCCCTAACCTTA+AGG | - | tig0042682:4494-4513 | Msa1462850:intron | 35.0% | |
| !! | CTTAATCTTATTGGTGTTGG+AGG | - | tig0042682:4519-4538 | Msa1462850:intron | 35.0% |
| AGGTGTGAGAGATTAATCTT+AGG | + | tig0042682:4555-4574 | None:intergenic | 35.0% | |
| TTCAAATGCTCCTCTTTCTT+TGG | - | tig0042682:4596-4615 | Msa1462850:intron | 35.0% | |
| GCAGATATAACCAAAGAAAG+AGG | + | tig0042682:4609-4628 | None:intergenic | 35.0% | |
| AGATGGAAATCAACAAGACT+TGG | + | tig0042682:4633-4652 | None:intergenic | 35.0% | |
| AGACTGAAGTTTGACAAAGA+AGG | + | tig0042682:4693-4712 | None:intergenic | 35.0% | |
| ! | GAGCTAGTGTTGAAAAATTG+TGG | - | tig0042682:4732-4751 | Msa1462850:intron | 35.0% |
| ! | TAAGTTTAGGTTATGAGGCT+TGG | - | tig0042682:4955-4974 | Msa1462850:intron | 35.0% |
| TAAGTTTGGAAAATGGGACT+GGG | - | tig0042682:5006-5025 | Msa1462850:intron | 35.0% | |
| AGAAGGAATCAAGGATACTT+TGG | - | tig0042682:5241-5260 | Msa1462850:CDS | 35.0% | |
| ! | AAGGATACTTTGGTTTCAGA+TGG | - | tig0042682:5251-5270 | Msa1462850:CDS | 35.0% |
| ATTGTGTTACAGTTAGGAGT+AGG | - | tig0042682:5337-5356 | Msa1462850:CDS | 35.0% | |
| TTGTGTTACAGTTAGGAGTA+GGG | - | tig0042682:5338-5357 | Msa1462850:CDS | 35.0% | |
| TCGTAAGTGTAGTTCAAACT+AGG | - | tig0042682:5459-5478 | Msa1462850:CDS | 35.0% | |
| GAAACCAGATTAACTAGAAG+TGG | - | tig0042682:5481-5500 | Msa1462850:CDS | 35.0% | |
| ATATGTTCAGAACAAGTGAG+CGG | + | tig0042682:5569-5588 | None:intergenic | 35.0% | |
| GAAAGAACAAGTGAACAACA+AGG | + | tig0042682:5613-5632 | None:intergenic | 35.0% | |
| ! | TGATTTGAGGTAACGAGAGA+TGG | + | tig0042682:3180-3199 | None:intergenic | 40.0% |
| TATCTGGTGAACGTGATTTG+AGG | + | tig0042682:3193-3212 | None:intergenic | 40.0% | |
| GAGAAGGAGGTTCTTGAAAA+CGG | + | tig0042682:3243-3262 | None:intergenic | 40.0% | |
| !! | ATGGTGACGGATTCAAGATT+GGG | + | tig0042682:3272-3291 | None:intergenic | 40.0% |
| AATCTTGAATCCGTCACCAT+CGG | - | tig0042682:3272-3291 | Msa1462850:three_prime_UTR | 40.0% | |
| AGAGAGCGACTTAATCGAAT+TGG | + | tig0042682:3405-3424 | None:intergenic | 40.0% | |
| !! | GCTCTCTGTTTCTGATTTCT+GGG | - | tig0042682:3418-3437 | Msa1462850:CDS | 40.0% |
| TAACAAGTGGAAGAGATGAG+GGG | + | tig0042682:3476-3495 | None:intergenic | 40.0% | |
| CTAACAAGTGGAAGAGATGA+GGG | + | tig0042682:3477-3496 | None:intergenic | 40.0% | |
| ACTAACAAGTGGAAGAGATG+AGG | + | tig0042682:3478-3497 | None:intergenic | 40.0% | |
| GAATTGAATTGTGACCGCAA+TGG | - | tig0042682:3605-3624 | Msa1462850:CDS | 40.0% | |
| ! | TCTAATTTTCTATGCCGTGG+AGG | - | tig0042682:3756-3775 | Msa1462850:CDS | 40.0% |
| TCGGATGCATATGCCTAAAA+AGG | - | tig0042682:3885-3904 | Msa1462850:CDS | 40.0% | |
| CACACCTTCAAACTTGTCAA+TGG | - | tig0042682:4568-4587 | Msa1462850:intron | 40.0% | |
| CCTTCAAACTTGTCAATGGT+CGG | - | tig0042682:4572-4591 | Msa1462850:intron | 40.0% | |
| !! | TTGACAAAGAAGGTGCTTCA+AGG | + | tig0042682:4683-4702 | None:intergenic | 40.0% |
| GTCTCTCTACAACAACACAA+TGG | + | tig0042682:4824-4843 | None:intergenic | 40.0% | |
| AAGAACAGAGAGAGTTGTAG+AGG | - | tig0042682:4863-4882 | Msa1462850:intron | 40.0% | |
| GTTGATCAAGTAGGAGAGTT+TGG | - | tig0042682:4891-4910 | Msa1462850:intron | 40.0% | |
| ! | CATTTTCCAAACTTACCCTG+CGG | + | tig0042682:5001-5020 | None:intergenic | 40.0% |
| GCAGGGTAAGTTTGGAAAAT+GGG | - | tig0042682:5000-5019 | Msa1462850:intron | 40.0% | |
| GTAAGTTTGGAAAATGGGAC+TGG | - | tig0042682:5005-5024 | Msa1462850:intron | 40.0% | |
| TTAGATGGAGATGGGGAATA+TGG | - | tig0042682:5216-5235 | Msa1462850:CDS | 40.0% | |
| AGATGGGGAATATGGAAAGA+AGG | - | tig0042682:5224-5243 | Msa1462850:CDS | 40.0% | |
| GATGGCATCTAGTGTGTTTA+AGG | - | tig0042682:5269-5288 | Msa1462850:CDS | 40.0% | |
| GTTTAAGGAAAAGGGAGAGT+CGG | - | tig0042682:5284-5303 | Msa1462850:CDS | 40.0% | |
| GTCGGTCTTTGAATTGTTGT+AGG | - | tig0042682:5302-5321 | Msa1462850:CDS | 40.0% | |
| ! | AACGCCACTTCTAGTTAATC+TGG | + | tig0042682:5488-5507 | None:intergenic | 40.0% |
| AGATTAACTAGAAGTGGCGT+TGG | - | tig0042682:5487-5506 | Msa1462850:CDS | 40.0% | |
| ! | TTGTTTGCGCATGTTTTGCG+TGG | + | tig0042682:2980-2999 | None:intergenic | 45.0% |
| GAGGGTAGATTCTCCATTGA+AGG | + | tig0042682:3035-3054 | None:intergenic | 45.0% | |
| ATTTCTACAACCAGCGGAGA+GGG | + | tig0042682:3053-3072 | None:intergenic | 45.0% | |
| AATTTCTACAACCAGCGGAG+AGG | + | tig0042682:3054-3073 | None:intergenic | 45.0% | |
| GAGTCTGCATCTTGCTAGAT+CGG | + | tig0042682:3099-3118 | None:intergenic | 45.0% | |
| ACGAGAGATGGAACAGATGA+GGG | + | tig0042682:3168-3187 | None:intergenic | 45.0% | |
| AACGAGAGATGGAACAGATG+AGG | + | tig0042682:3169-3188 | None:intergenic | 45.0% | |
| !! | TGGTGACGGATTCAAGATTG+GGG | + | tig0042682:3271-3290 | None:intergenic | 45.0% |
| !! | GATGGTGACGGATTCAAGAT+TGG | + | tig0042682:3273-3292 | None:intergenic | 45.0% |
| !! | CGCTCTCTGTTTCTGATTTC+TGG | - | tig0042682:3417-3436 | Msa1462850:CDS | 45.0% |
| !! | AGAAAGCTTAAAGAGTGCCC+CGG | + | tig0042682:4073-4092 | None:intergenic | 45.0% |
| AAATGTTAACGAGTGCCCCT+GGG | + | tig0042682:4201-4220 | None:intergenic | 45.0% | |
| ATCCTTTGTGCTACAGGCTA+TGG | - | tig0042682:4348-4367 | Msa1462850:intron | 45.0% | |
| AACCATAGCCTGTAGCACAA+AGG | + | tig0042682:4353-4372 | None:intergenic | 45.0% | |
| TTGTGCTACAGGCTATGGTT+TGG | - | tig0042682:4353-4372 | Msa1462850:intron | 45.0% | |
| !! | AGGCTATGGTTTGGTGCAAT+TGG | - | tig0042682:4362-4381 | Msa1462850:intron | 45.0% |
| !! | CTATGGTTTGGTGCAATTGG+AGG | - | tig0042682:4365-4384 | Msa1462850:intron | 45.0% |
| !! | GTTTGGTGCAATTGGAGGTT+AGG | - | tig0042682:4370-4389 | Msa1462850:intron | 45.0% |
| AATTGGAGGTTAGGAACGCT+TGG | - | tig0042682:4379-4398 | Msa1462850:intron | 45.0% | |
| CCGACCATTGACAAGTTTGA+AGG | + | tig0042682:4575-4594 | None:intergenic | 45.0% | |
| TAGGCTTGACACACTTGAGA+TGG | + | tig0042682:4650-4669 | None:intergenic | 45.0% | |
| ATCTCAAGTGTGTCAAGCCT+AGG | - | tig0042682:4649-4668 | Msa1462850:intron | 45.0% | |
| GCTTCAAGGAAAAGCAACCT+AGG | + | tig0042682:4669-4688 | None:intergenic | 45.0% | |
| ACAATGCCTTCAGCTTGAAG+CGG | - | tig0042682:4761-4780 | Msa1462850:intron | 45.0% | |
| ACAGAGAGAGTTGTAGAGGT+TGG | - | tig0042682:4867-4886 | Msa1462850:intron | 45.0% | |
| ! | GAGGTTGGAGTTGATCAAGT+AGG | - | tig0042682:4882-4901 | Msa1462850:intron | 45.0% |
| !! | TTATGAGGCTTGGCTTGTGA+TGG | - | tig0042682:4965-4984 | Msa1462850:intron | 45.0% |
| TTCTTTCCGCAGGGTAAGTT+TGG | - | tig0042682:4992-5011 | Msa1462850:intron | 45.0% | |
| CGCAGGGTAAGTTTGGAAAA+TGG | - | tig0042682:4999-5018 | Msa1462850:intron | 45.0% | |
| !! | AGAGCTTGTTGCACATATCG+TGG | - | tig0042682:5043-5062 | Msa1462850:intron | 45.0% |
| TTTGGATAAATGCACCCTCC+TGG | - | tig0042682:5106-5125 | Msa1462850:CDS | 45.0% | |
| TTGGATAAATGCACCCTCCT+GGG | - | tig0042682:5107-5126 | Msa1462850:CDS | 45.0% | |
| GACGTTTCTCTGTTCATCCA+CGG | - | tig0042682:5131-5150 | Msa1462850:CDS | 45.0% | |
| ATGAGATTTCCAGCAGCACA+AGG | + | tig0042682:5167-5186 | None:intergenic | 45.0% | |
| GCAAATTCCCTGGAGTTAGA+TGG | - | tig0042682:5201-5220 | Msa1462850:CDS | 45.0% | |
| AACAACACGCATCGTGATCG+TGG | - | tig0042682:2995-3014 | Msa1462850:three_prime_UTR | 50.0% | |
| CTAGATCGGTTGAGTCGTTG+AGG | + | tig0042682:3085-3104 | None:intergenic | 50.0% | |
| GAGGGTCAACGAACGAACTT+CGG | + | tig0042682:3150-3169 | None:intergenic | 50.0% | |
| ! | GTGATGAGGTGCTTGGTATC+TGG | + | tig0042682:3209-3228 | None:intergenic | 50.0% |
| !!! | CGGTTTTGAAAGGGGTGATG+AGG | + | tig0042682:3223-3242 | None:intergenic | 50.0% |
| CGGATTCAAGATTGGGGGAT+CGG | + | tig0042682:3265-3284 | None:intergenic | 50.0% | |
| !! | GGTGACGGATTCAAGATTGG+GGG | + | tig0042682:3270-3289 | None:intergenic | 50.0% |
| AAGAGAACGATCAACGCCGA+TGG | + | tig0042682:3291-3310 | None:intergenic | 50.0% | |
| GGTTTCTGCAACTGCCATTG+CGG | + | tig0042682:3622-3641 | None:intergenic | 50.0% | |
| !! | AAAGCTTAAAGAGTGCCCCG+GGG | + | tig0042682:4071-4090 | None:intergenic | 50.0% |
| !! | GAAAGCTTAAAGAGTGCCCC+GGG | + | tig0042682:4072-4091 | None:intergenic | 50.0% |
| AAGTGCTTAACCAGTGTCCC+AGG | - | tig0042682:4181-4200 | Msa1462850:CDS | 50.0% | |
| AGTGCTTAACCAGTGTCCCA+GGG | - | tig0042682:4182-4201 | Msa1462850:CDS | 50.0% | |
| GAAATGTTAACGAGTGCCCC+TGG | + | tig0042682:4202-4221 | None:intergenic | 50.0% | |
| ! | TAGGAACGCTTGGTTAGCTG+TGG | - | tig0042682:4389-4408 | Msa1462850:intron | 50.0% |
| ! | AACGCTTGGTTAGCTGTGGA+TGG | - | tig0042682:4393-4412 | Msa1462850:intron | 50.0% |
| TGATGGAGAGTTCTTTCCGC+AGG | - | tig0042682:4982-5001 | Msa1462850:intron | 50.0% | |
| GATGGAGAGTTCTTTCCGCA+GGG | - | tig0042682:4983-5002 | Msa1462850:intron | 50.0% | |
| TGAACAGAGAAACGTCTCCC+AGG | + | tig0042682:5127-5146 | None:intergenic | 50.0% | |
| GTGTGCAGAAGCAAATTCCC+TGG | - | tig0042682:5191-5210 | Msa1462850:CDS | 50.0% | |
| TCCCTGGAGTTAGATGGAGA+TGG | - | tig0042682:5207-5226 | Msa1462850:CDS | 50.0% | |
| CCCATCTCCATCTAACTCCA+GGG | + | tig0042682:5211-5230 | None:intergenic | 50.0% | |
| CCCTGGAGTTAGATGGAGAT+GGG | - | tig0042682:5208-5227 | Msa1462850:CDS | 50.0% | |
| CCTGGAGTTAGATGGAGATG+GGG | - | tig0042682:5209-5228 | Msa1462850:CDS | 50.0% | |
| AACACGCATCGTGATCGTGG+TGG | - | tig0042682:2998-3017 | Msa1462850:three_prime_UTR | 55.0% | |
| GATCGGTTGAGTCGTTGAGG+CGG | + | tig0042682:3082-3101 | None:intergenic | 55.0% | |
| TTCGGAGGAAGCGGAGTTGA+GGG | + | tig0042682:3132-3151 | None:intergenic | 55.0% | |
| CGAACGAACTTCGGAGGAAG+CGG | + | tig0042682:3141-3160 | None:intergenic | 55.0% | |
| GGTCAACGAACGAACTTCGG+AGG | + | tig0042682:3147-3166 | None:intergenic | 55.0% | |
| ! | GAAAGGGGTGATGAGGTGCT+TGG | + | tig0042682:3216-3235 | None:intergenic | 55.0% |
| CAAGATTGGGGGATCGGAGA+AGG | + | tig0042682:3259-3278 | None:intergenic | 55.0% | |
| ACGATCAACGCCGATGGTGA+CGG | + | tig0042682:3285-3304 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACGAGTGCCCC+CGG | - | tig0042682:4051-4070 | Msa1462850:CDS | 55.0% |
| TCTTGTTAACGAGTGCCCCC+GGG | - | tig0042682:4052-4071 | Msa1462850:CDS | 55.0% | |
| !! | AAGCTTAAAGAGTGCCCCGG+GGG | + | tig0042682:4070-4089 | None:intergenic | 55.0% |
| GTGCTTAACCAGTGTCCCAG+GGG | - | tig0042682:4183-4202 | Msa1462850:CDS | 55.0% | |
| CGCATTCCGCTTCAAGCTGA+AGG | + | tig0042682:4770-4789 | None:intergenic | 55.0% | |
| CAGAGAAACGTCTCCCAGGA+GGG | + | tig0042682:5123-5142 | None:intergenic | 55.0% | |
| ACAGAGAAACGTCTCCCAGG+AGG | + | tig0042682:5124-5143 | None:intergenic | 55.0% | |
| CACAAGGATCAGCATCACCG+TGG | + | tig0042682:5151-5170 | None:intergenic | 55.0% | |
| GATGCTGATCCTTGTGCTGC+TGG | - | tig0042682:5155-5174 | Msa1462850:CDS | 55.0% | |
| CCCCATCTCCATCTAACTCC+AGG | + | tig0042682:5212-5231 | None:intergenic | 55.0% | |
| GGAGAATCTACCCTCTCCGC+TGG | - | tig0042682:3040-3059 | Msa1462850:three_prime_UTR | 60.0% | |
| CTTCGGAGGAAGCGGAGTTG+AGG | + | tig0042682:3133-3152 | None:intergenic | 60.0% | |
| GATTGGGGGATCGGAGAAGG+AGG | + | tig0042682:3256-3275 | None:intergenic | 60.0% | |
| CTTGTTAACGAGTGCCCCCG+GGG | - | tig0042682:4053-4072 | Msa1462850:CDS | 60.0% | |
| AACGAGTGCCCCTGGGACAC+TGG | + | tig0042682:4194-4213 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042682 | gene | 2904 | 5680 | 2904 | ID=Msa1462850;Name=Msa1462850 |
| tig0042682 | mRNA | 2904 | 5680 | 2904 | ID=Msa1462850-mRNA-1;Parent=Msa1462850;Name=Msa1462850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=134|1|1|1|1|1|2|400|456 |
| tig0042682 | exon | 2904 | 4220 | 2904 | ID=Msa1462850-mRNA-1:exon:23814;Parent=Msa1462850-mRNA-1 |
| tig0042682 | exon | 5093 | 5680 | 5093 | ID=Msa1462850-mRNA-1:exon:23813;Parent=Msa1462850-mRNA-1 |
| tig0042682 | five_prime_UTR | 5547 | 5680 | 5547 | ID=Msa1462850-mRNA-1:five_prime_utr;Parent=Msa1462850-mRNA-1 |
| tig0042682 | CDS | 5093 | 5546 | 5093 | ID=Msa1462850-mRNA-1:cds;Parent=Msa1462850-mRNA-1 |
| tig0042682 | CDS | 3304 | 4220 | 3304 | ID=Msa1462850-mRNA-1:cds;Parent=Msa1462850-mRNA-1 |
| tig0042682 | three_prime_UTR | 2904 | 3303 | 2904 | ID=Msa1462850-mRNA-1:three_prime_utr;Parent=Msa1462850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
