Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466420 | XP_003621390.2 | 100.000 | 285 | 0 | 0 | 1 | 285 | 585 | 869 | 0.0 | 589 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466420 | sp|Q9LF37|CLPB3_ARATH | 89.825 | 285 | 28 | 1 | 1 | 285 | 579 | 862 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466420 | G7L491 | 100.000 | 285 | 0 | 0 | 1 | 285 | 585 | 869 | 0.0 | 589 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1008020 | Msa1466420 | 0.870894 | 1.033312e-66 | -8.615850e-47 |
| Msa1008090 | Msa1466420 | 0.850859 | 1.293281e-60 | -8.615850e-47 |
| Msa1049480 | Msa1466420 | 0.858054 | 1.071912e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466420 | MtrunA17_Chr7g0218421 | 100.000 | 285 | 0 | 0 | 1 | 285 | 585 | 869 | 0.0 | 589 |
| Msa1466420 | MtrunA17_Chr6g0454071 | 94.035 | 285 | 17 | 0 | 1 | 285 | 581 | 865 | 0.0 | 559 |
| Msa1466420 | MtrunA17_Chr3g0137071 | 75.874 | 286 | 68 | 1 | 1 | 285 | 593 | 878 | 2.93e-156 | 460 |
| Msa1466420 | MtrunA17_Chr4g0061371 | 56.993 | 286 | 116 | 3 | 1 | 285 | 504 | 783 | 1.96e-111 | 342 |
| Msa1466420 | MtrunA17_Chr3g0131711 | 60.784 | 255 | 94 | 1 | 33 | 281 | 569 | 823 | 4.02e-106 | 328 |
| Msa1466420 | MtrunA17_Chr3g0134631 | 61.176 | 255 | 93 | 1 | 33 | 281 | 574 | 828 | 7.18e-106 | 328 |
| Msa1466420 | MtrunA17_Chr8g0385811 | 60.000 | 255 | 96 | 1 | 33 | 281 | 573 | 827 | 1.41e-104 | 325 |
| Msa1466420 | MtrunA17_Chr7g0225161 | 55.594 | 286 | 120 | 3 | 1 | 285 | 504 | 783 | 6.75e-104 | 322 |
| Msa1466420 | MtrunA17_Chr3g0102771 | 52.778 | 252 | 116 | 1 | 33 | 284 | 454 | 702 | 1.88e-94 | 296 |
| Msa1466420 | MtrunA17_Chr3g0131351 | 50.877 | 285 | 123 | 4 | 12 | 284 | 594 | 873 | 5.83e-94 | 297 |
| Msa1466420 | MtrunA17_Chr2g0329561 | 47.368 | 285 | 136 | 3 | 1 | 285 | 108 | 378 | 4.97e-83 | 257 |
| Msa1466420 | MtrunA17_Chr2g0277781 | 50.612 | 245 | 112 | 2 | 41 | 285 | 2 | 237 | 7.56e-81 | 246 |
| Msa1466420 | MtrunA17_Chr1g0188061 | 58.763 | 97 | 40 | 0 | 118 | 214 | 221 | 317 | 3.60e-33 | 124 |
| Msa1466420 | MtrunA17_Chr7g0260931 | 55.319 | 94 | 42 | 0 | 28 | 121 | 1 | 94 | 5.36e-30 | 108 |
| Msa1466420 | MtrunA17_Chr3g0135231 | 44.554 | 101 | 52 | 1 | 175 | 275 | 546 | 642 | 6.06e-18 | 83.6 |
| Msa1466420 | MtrunA17_Chr3g0105051 | 26.852 | 216 | 125 | 7 | 64 | 257 | 680 | 884 | 1.04e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466420 | AT5G15450.1 | 89.825 | 285 | 28 | 1 | 1 | 285 | 579 | 862 | 0.0 | 528 |
| Msa1466420 | AT2G25140.1 | 74.476 | 286 | 72 | 1 | 1 | 285 | 584 | 869 | 5.62e-152 | 449 |
| Msa1466420 | AT1G74310.2 | 58.947 | 285 | 109 | 2 | 1 | 285 | 504 | 780 | 2.53e-112 | 343 |
| Msa1466420 | AT1G74310.1 | 58.947 | 285 | 109 | 2 | 1 | 285 | 504 | 780 | 2.26e-111 | 342 |
| Msa1466420 | AT5G50920.1 | 61.569 | 255 | 92 | 1 | 33 | 281 | 571 | 825 | 6.15e-108 | 334 |
| Msa1466420 | AT3G48870.2 | 57.244 | 283 | 109 | 3 | 5 | 281 | 539 | 815 | 9.74e-106 | 328 |
| Msa1466420 | AT3G48870.1 | 57.244 | 283 | 109 | 3 | 5 | 281 | 570 | 846 | 2.37e-105 | 327 |
| Msa1466420 | AT3G48870.4 | 57.244 | 283 | 109 | 3 | 5 | 281 | 570 | 846 | 2.37e-105 | 327 |
| Msa1466420 | AT3G48870.3 | 57.244 | 283 | 109 | 3 | 5 | 281 | 570 | 846 | 2.37e-105 | 327 |
| Msa1466420 | AT5G51070.1 | 54.054 | 259 | 104 | 2 | 37 | 284 | 594 | 848 | 3.37e-95 | 300 |
| Msa1466420 | AT4G14670.1 | 53.797 | 158 | 68 | 1 | 1 | 158 | 470 | 622 | 1.19e-50 | 176 |
| Msa1466420 | AT4G30350.1 | 30.178 | 169 | 106 | 3 | 68 | 234 | 577 | 735 | 8.21e-13 | 68.9 |
| Msa1466420 | AT5G57710.1 | 25.294 | 170 | 109 | 4 | 103 | 269 | 655 | 809 | 7.74e-12 | 66.2 |
Find 68 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGCTAGCTTCATGTTTA+TGG | 0.140008 | tig0046901:+317 | Msa1466420:CDS |
| ATCCATTACCCGCTGCTTTA+TGG | 0.149238 | tig0046901:-748 | Msa1466420:intergenic |
| GGAGAAGTTGTTGTATTTAG+AGG | 0.254015 | tig0046901:+194 | Msa1466420:CDS |
| TAGTAGCATTGTCCGGTTAC+AGG | 0.286464 | tig0046901:+854 | Msa1466420:CDS |
| CATGCAGTTTCAAGATTGAT+TGG | 0.304691 | tig0046901:+447 | Msa1466420:CDS |
| ATTGCTAGCTTCATGTTTAT+GGG | 0.310962 | tig0046901:+318 | Msa1466420:CDS |
| CCGCTGCTTTATGGTTTCAT+AGG | 0.325986 | tig0046901:-739 | Msa1466420:intergenic |
| TTCCATCATCTAAAATTTGA+AGG | 0.372126 | tig0046901:-596 | Msa1466420:intergenic |
| GTTTCATAGGCTAATTCCTT+AGG | 0.399438 | tig0046901:-726 | Msa1466420:intergenic |
| ATGCAGTTTCAAGATTGATT+GGG | 0.406838 | tig0046901:+448 | Msa1466420:CDS |
| ATGCTAAGAGAAGAAGTAAC+CGG | 0.410050 | tig0046901:+102 | Msa1466420:CDS |
| TTTGATCACGGTCGAGAGGC+TGG | 0.435919 | tig0046901:-830 | Msa1466420:intergenic |
| TTCATGTTTATGGGGCCTAC+AGG | 0.444724 | tig0046901:+327 | Msa1466420:CDS |
| AACCATAAAGCAGCGGGTAA+TGG | 0.450765 | tig0046901:+746 | Msa1466420:CDS |
| TCAAACAAAATAACAGCATA+AGG | 0.456649 | tig0046901:-534 | Msa1466420:intergenic |
| CATAAACTCGGGGCGAAAGA+TGG | 0.462970 | tig0046901:-781 | Msa1466420:intergenic |
| ATAAACATGAAGCTAGCAAT+TGG | 0.464537 | tig0046901:-315 | Msa1466420:intergenic |
| GTACTTCATAAGCGTGTTGT+AGG | 0.464753 | tig0046901:+219 | Msa1466420:CDS |
| AGCCTCGGCTACTGCTTTAA+CGG | 0.470021 | tig0046901:-253 | Msa1466420:intergenic |
| TTAGATGAATATATGAACTC+TGG | 0.478286 | tig0046901:+72 | Msa1466420:CDS |
| GGAGTGAAGTTACCTGTAAC+CGG | 0.483592 | tig0046901:-866 | Msa1466420:intergenic |
| AAATAACAGCATAAGGTCTT+CGG | 0.488546 | tig0046901:-527 | Msa1466420:intergenic |
| ATCATTATGACCTCAAATGT+TGG | 0.489004 | tig0046901:+666 | Msa1466420:CDS |
| AGATTGATTGGGGCACCACC+TGG | 0.490582 | tig0046901:+459 | Msa1466420:CDS |
| AGGTCTTCGGCGAACTGTCT+CGG | 0.491652 | tig0046901:-514 | Msa1466420:intergenic |
| GGGGCACCACCTGGATATGT+TGG | 0.499520 | tig0046901:+468 | Msa1466420:CDS |
| TCTTCGTACCCAACATATCC+AGG | 0.500478 | tig0046901:-477 | Msa1466420:intergenic |
| GTTGTCGTTGCAATGAGTTA+AGG | 0.500716 | tig0046901:-29 | Msa1466420:intergenic |
| AATTGATATGAGTGAGTACA+TGG | 0.507053 | tig0046901:+419 | Msa1466420:CDS |
| GCTATCCAACGTTCAAGAGC+AGG | 0.508885 | tig0046901:+273 | Msa1466420:CDS |
| ATCAAATTAGTAGCATTGTC+CGG | 0.508919 | tig0046901:+847 | Msa1466420:CDS |
| GGGCACCACCTGGATATGTT+GGG | 0.512796 | tig0046901:+469 | Msa1466420:CDS |
| TTGCTAGCTTCATGTTTATG+GGG | 0.518821 | tig0046901:+319 | Msa1466420:CDS |
| GGTCATAATGATAACAGTAT+TGG | 0.522391 | tig0046901:-655 | Msa1466420:intergenic |
| TCGGCTACTGCTTTAACGGC+AGG | 0.531031 | tig0046901:-249 | Msa1466420:intergenic |
| AATTTCAGCAATATCACTCC+CGG | 0.532200 | tig0046901:-121 | Msa1466420:intergenic |
| TCAACTCTATTCATAAACTC+GGG | 0.537745 | tig0046901:-792 | Msa1466420:intergenic |
| TGGAAGAGTAACTGACTCAC+AGG | 0.542940 | tig0046901:+614 | Msa1466420:CDS |
| GGATGATGACACAGCACCTA+AGG | 0.546384 | tig0046901:+710 | Msa1466420:CDS |
| TTGCTGAAATTGTAAGCAAG+TGG | 0.546977 | tig0046901:+133 | Msa1466420:CDS |
| TAGATGAATATATGAACTCT+GGG | 0.548569 | tig0046901:+73 | Msa1466420:CDS |
| CTATGAAACCATAAAGCAGC+GGG | 0.552881 | tig0046901:+740 | Msa1466420:CDS |
| TCTTGAACGTTGGATAGCCT+CGG | 0.554206 | tig0046901:-268 | Msa1466420:intergenic |
| TGCAGTTTCAAGATTGATTG+GGG | 0.555464 | tig0046901:+449 | Msa1466420:CDS |
| TTTATGGGGCCTACAGGTGT+AGG | 0.558111 | tig0046901:+333 | Msa1466420:CDS |
| AAAGACCTGCTCTTGAACGT+TGG | 0.563977 | tig0046901:-278 | Msa1466420:intergenic |
| CAAAACTTCAACAATCAGAG+AGG | 0.565499 | tig0046901:+172 | Msa1466420:CDS |
| ATCAACTCTATTCATAAACT+CGG | 0.565760 | tig0046901:-793 | Msa1466420:intergenic |
| GTACTGCGATCCAACATTTG+AGG | 0.565812 | tig0046901:-676 | Msa1466420:intergenic |
| TTTGTTTGATGAGATTGAGA+AGG | 0.567295 | tig0046901:+548 | Msa1466420:CDS |
| AAAACTTCAACAATCAGAGA+GGG | 0.591945 | tig0046901:+173 | Msa1466420:CDS |
| GGATATGTTGGGTACGAAGA+GGG | 0.597925 | tig0046901:+480 | Msa1466420:CDS |
| CTAATTTGATCACGGTCGAG+AGG | 0.615964 | tig0046901:-834 | Msa1466420:intergenic |
| GAAATTGTAAGCAAGTGGAC+CGG | 0.621826 | tig0046901:+138 | Msa1466420:CDS |
| TGCTAAGAGAAGAAGTAACC+GGG | 0.623358 | tig0046901:+103 | Msa1466420:CDS |
| TGGATATGTTGGGTACGAAG+AGG | 0.643408 | tig0046901:+479 | Msa1466420:CDS |
| TTCTTCTGTATTGAACATGT+AGG | 0.647488 | tig0046901:-385 | Msa1466420:intergenic |
| ACATGAAGCTAGCAATTGGA+CGG | 0.647724 | tig0046901:-311 | Msa1466420:intergenic |
| CAATGCTACTAATTTGATCA+CGG | 0.650855 | tig0046901:-842 | Msa1466420:intergenic |
| CAACTCTATTCATAAACTCG+GGG | 0.656776 | tig0046901:-791 | Msa1466420:intergenic |
| AAGCTAGCAATTGGACGGTG+AGG | 0.661577 | tig0046901:-306 | Msa1466420:intergenic |
| TGCCGTTAAAGCAGTAGCCG+AGG | 0.661781 | tig0046901:+251 | Msa1466420:CDS |
| GCAACGACAACTTGAGAGTG+CGG | 0.664276 | tig0046901:+41 | Msa1466420:CDS |
| TATGTTGGGTACGAAGAGGG+AGG | 0.694237 | tig0046901:+483 | Msa1466420:CDS |
| ATCGCAGTACATTCTAAACA+CGG | 0.699680 | tig0046901:+689 | Msa1466420:CDS |
| CCTATGAAACCATAAAGCAG+CGG | 0.709298 | tig0046901:+739 | Msa1466420:CDS |
| GGAAGAGTAACTGACTCACA+GGG | 0.729785 | tig0046901:+615 | Msa1466420:CDS |
| TCGTACCCAACATATCCAGG+TGG | 0.765588 | tig0046901:-474 | Msa1466400:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTAGATGAATATATGAACTC+TGG | + | tig0046901:72-91 | Msa1466420:CDS | 25.0% |
| ! | TAGATGAATATATGAACTCT+GGG | + | tig0046901:73-92 | Msa1466420:CDS | 25.0% |
| ! | TCAAACAAAATAACAGCATA+AGG | - | tig0046901:537-556 | Msa1466420:intergenic | 25.0% |
| !! | TTCCTTCAAATTTTAGATGA+TGG | + | tig0046901:594-613 | Msa1466420:CDS | 25.0% |
| !! | TTCCATCATCTAAAATTTGA+AGG | - | tig0046901:599-618 | Msa1466420:intergenic | 25.0% |
| ! | ATCAACTCTATTCATAAACT+CGG | - | tig0046901:796-815 | Msa1466420:intergenic | 25.0% |
| ! | TTAGATGAATATATGAACTC+TGG | + | tig0046901:72-91 | Msa1466420:CDS | 25.0% |
| ! | TAGATGAATATATGAACTCT+GGG | + | tig0046901:73-92 | Msa1466420:CDS | 25.0% |
| ! | TCAAACAAAATAACAGCATA+AGG | - | tig0046901:537-556 | Msa1466420:intergenic | 25.0% |
| !! | TTCCTTCAAATTTTAGATGA+TGG | + | tig0046901:594-613 | Msa1466420:CDS | 25.0% |
| !! | TTCCATCATCTAAAATTTGA+AGG | - | tig0046901:599-618 | Msa1466420:intergenic | 25.0% |
| ! | ATCAACTCTATTCATAAACT+CGG | - | tig0046901:796-815 | Msa1466420:intergenic | 25.0% |
| !!! | GATTGTTGAAGTTTTGAAAC+AGG | - | tig0046901:168-187 | Msa1466420:intergenic | 30.0% |
| AAAACTTCAACAATCAGAGA+GGG | + | tig0046901:173-192 | Msa1466420:CDS | 30.0% | |
| ATAAACATGAAGCTAGCAAT+TGG | - | tig0046901:318-337 | Msa1466420:intergenic | 30.0% | |
| ! | AATTGCTAGCTTCATGTTTA+TGG | + | tig0046901:317-336 | Msa1466420:CDS | 30.0% |
| ! | ATTGCTAGCTTCATGTTTAT+GGG | + | tig0046901:318-337 | Msa1466420:CDS | 30.0% |
| TTCTTCTGTATTGAACATGT+AGG | - | tig0046901:388-407 | Msa1466420:intergenic | 30.0% | |
| AATTGATATGAGTGAGTACA+TGG | + | tig0046901:419-438 | Msa1466420:CDS | 30.0% | |
| ATGCAGTTTCAAGATTGATT+GGG | + | tig0046901:448-467 | Msa1466420:CDS | 30.0% | |
| AAATAACAGCATAAGGTCTT+CGG | - | tig0046901:530-549 | Msa1466420:intergenic | 30.0% | |
| TTTGTTTGATGAGATTGAGA+AGG | + | tig0046901:548-567 | Msa1466420:CDS | 30.0% | |
| GGTCATAATGATAACAGTAT+TGG | - | tig0046901:658-677 | Msa1466420:intergenic | 30.0% | |
| ATCATTATGACCTCAAATGT+TGG | + | tig0046901:666-685 | Msa1466420:CDS | 30.0% | |
| TCAACTCTATTCATAAACTC+GGG | - | tig0046901:795-814 | Msa1466420:intergenic | 30.0% | |
| CAATGCTACTAATTTGATCA+CGG | - | tig0046901:845-864 | Msa1466420:intergenic | 30.0% | |
| ATCAAATTAGTAGCATTGTC+CGG | + | tig0046901:847-866 | Msa1466420:CDS | 30.0% | |
| !!! | GATTGTTGAAGTTTTGAAAC+AGG | - | tig0046901:168-187 | Msa1466420:intergenic | 30.0% |
| AAAACTTCAACAATCAGAGA+GGG | + | tig0046901:173-192 | Msa1466420:CDS | 30.0% | |
| ATAAACATGAAGCTAGCAAT+TGG | - | tig0046901:318-337 | Msa1466420:intergenic | 30.0% | |
| ! | AATTGCTAGCTTCATGTTTA+TGG | + | tig0046901:317-336 | Msa1466420:CDS | 30.0% |
| ! | ATTGCTAGCTTCATGTTTAT+GGG | + | tig0046901:318-337 | Msa1466420:CDS | 30.0% |
| TTCTTCTGTATTGAACATGT+AGG | - | tig0046901:388-407 | Msa1466420:intergenic | 30.0% | |
| AATTGATATGAGTGAGTACA+TGG | + | tig0046901:419-438 | Msa1466420:CDS | 30.0% | |
| ATGCAGTTTCAAGATTGATT+GGG | + | tig0046901:448-467 | Msa1466420:CDS | 30.0% | |
| AAATAACAGCATAAGGTCTT+CGG | - | tig0046901:530-549 | Msa1466420:intergenic | 30.0% | |
| TTTGTTTGATGAGATTGAGA+AGG | + | tig0046901:548-567 | Msa1466420:CDS | 30.0% | |
| GGTCATAATGATAACAGTAT+TGG | - | tig0046901:658-677 | Msa1466420:intergenic | 30.0% | |
| ATCATTATGACCTCAAATGT+TGG | + | tig0046901:666-685 | Msa1466420:CDS | 30.0% | |
| TCAACTCTATTCATAAACTC+GGG | - | tig0046901:795-814 | Msa1466420:intergenic | 30.0% | |
| CAATGCTACTAATTTGATCA+CGG | - | tig0046901:845-864 | Msa1466420:intergenic | 30.0% | |
| ATCAAATTAGTAGCATTGTC+CGG | + | tig0046901:847-866 | Msa1466420:CDS | 30.0% | |
| ATGCTAAGAGAAGAAGTAAC+CGG | + | tig0046901:102-121 | Msa1466420:CDS | 35.0% | |
| AATTTCAGCAATATCACTCC+CGG | - | tig0046901:124-143 | Msa1466420:intergenic | 35.0% | |
| TTGCTGAAATTGTAAGCAAG+TGG | + | tig0046901:133-152 | Msa1466420:CDS | 35.0% | |
| !!! | AAGTTTTGAAACAGGAATGC+CGG | - | tig0046901:160-179 | Msa1466420:intergenic | 35.0% |
| CAAAACTTCAACAATCAGAG+AGG | + | tig0046901:172-191 | Msa1466420:CDS | 35.0% | |
| GGAGAAGTTGTTGTATTTAG+AGG | + | tig0046901:194-213 | Msa1466420:CDS | 35.0% | |
| ! | TTGCTAGCTTCATGTTTATG+GGG | + | tig0046901:319-338 | Msa1466420:CDS | 35.0% |
| CATGCAGTTTCAAGATTGAT+TGG | + | tig0046901:447-466 | Msa1466420:CDS | 35.0% | |
| TGCAGTTTCAAGATTGATTG+GGG | + | tig0046901:449-468 | Msa1466420:CDS | 35.0% | |
| ATCGCAGTACATTCTAAACA+CGG | + | tig0046901:689-708 | Msa1466420:CDS | 35.0% | |
| GTTTCATAGGCTAATTCCTT+AGG | - | tig0046901:729-748 | Msa1466420:intergenic | 35.0% | |
| CAACTCTATTCATAAACTCG+GGG | - | tig0046901:794-813 | Msa1466420:intergenic | 35.0% | |
| ATGCTAAGAGAAGAAGTAAC+CGG | + | tig0046901:102-121 | Msa1466420:CDS | 35.0% | |
| AATTTCAGCAATATCACTCC+CGG | - | tig0046901:124-143 | Msa1466420:intergenic | 35.0% | |
| TTGCTGAAATTGTAAGCAAG+TGG | + | tig0046901:133-152 | Msa1466420:CDS | 35.0% | |
| !!! | AAGTTTTGAAACAGGAATGC+CGG | - | tig0046901:160-179 | Msa1466420:intergenic | 35.0% |
| CAAAACTTCAACAATCAGAG+AGG | + | tig0046901:172-191 | Msa1466420:CDS | 35.0% | |
| GGAGAAGTTGTTGTATTTAG+AGG | + | tig0046901:194-213 | Msa1466420:CDS | 35.0% | |
| ! | TTGCTAGCTTCATGTTTATG+GGG | + | tig0046901:319-338 | Msa1466420:CDS | 35.0% |
| CATGCAGTTTCAAGATTGAT+TGG | + | tig0046901:447-466 | Msa1466420:CDS | 35.0% | |
| TGCAGTTTCAAGATTGATTG+GGG | + | tig0046901:449-468 | Msa1466420:CDS | 35.0% | |
| ATCGCAGTACATTCTAAACA+CGG | + | tig0046901:689-708 | Msa1466420:CDS | 35.0% | |
| GTTTCATAGGCTAATTCCTT+AGG | - | tig0046901:729-748 | Msa1466420:intergenic | 35.0% | |
| CAACTCTATTCATAAACTCG+GGG | - | tig0046901:794-813 | Msa1466420:intergenic | 35.0% | |
| GTTGTCGTTGCAATGAGTTA+AGG | - | tig0046901:32-51 | Msa0550850:intergenic | 40.0% | |
| TGCTAAGAGAAGAAGTAACC+GGG | + | tig0046901:103-122 | Msa1466420:CDS | 40.0% | |
| GAAATTGTAAGCAAGTGGAC+CGG | + | tig0046901:138-157 | Msa1466420:CDS | 40.0% | |
| GTACTTCATAAGCGTGTTGT+AGG | + | tig0046901:219-238 | Msa1466420:CDS | 40.0% | |
| ACATGAAGCTAGCAATTGGA+CGG | - | tig0046901:314-333 | Msa1466420:intergenic | 40.0% | |
| ! | TCAGTTTTTCCTACACCTGT+AGG | - | tig0046901:345-364 | Msa1466420:intergenic | 40.0% |
| AGGTGTAGGAAAAACTGAGT+TGG | + | tig0046901:347-366 | Msa1466420:CDS | 40.0% | |
| CCTATGAAACCATAAAGCAG+CGG | + | tig0046901:739-758 | Msa1466420:CDS | 40.0% | |
| CTATGAAACCATAAAGCAGC+GGG | + | tig0046901:740-759 | Msa1466420:CDS | 40.0% | |
| GTTGTCGTTGCAATGAGTTA+AGG | - | tig0046901:32-51 | Msa1466420:intergenic | 40.0% | |
| TGCTAAGAGAAGAAGTAACC+GGG | + | tig0046901:103-122 | Msa1466420:CDS | 40.0% | |
| GAAATTGTAAGCAAGTGGAC+CGG | + | tig0046901:138-157 | Msa1466420:CDS | 40.0% | |
| GTACTTCATAAGCGTGTTGT+AGG | + | tig0046901:219-238 | Msa1466420:CDS | 40.0% | |
| ACATGAAGCTAGCAATTGGA+CGG | - | tig0046901:314-333 | Msa1466420:intergenic | 40.0% | |
| ! | TCAGTTTTTCCTACACCTGT+AGG | - | tig0046901:345-364 | Msa1466420:intergenic | 40.0% |
| AGGTGTAGGAAAAACTGAGT+TGG | + | tig0046901:347-366 | Msa1466420:CDS | 40.0% | |
| CCTATGAAACCATAAAGCAG+CGG | + | tig0046901:739-758 | Msa1466420:CDS | 40.0% | |
| CTATGAAACCATAAAGCAGC+GGG | + | tig0046901:740-759 | Msa1466420:CDS | 40.0% | |
| TCTTGAACGTTGGATAGCCT+CGG | - | tig0046901:271-290 | Msa1466420:intergenic | 45.0% | |
| AAAGACCTGCTCTTGAACGT+TGG | - | tig0046901:281-300 | Msa1466420:intergenic | 45.0% | |
| TTCATGTTTATGGGGCCTAC+AGG | + | tig0046901:327-346 | Msa1466420:CDS | 45.0% | |
| TCTTCGTACCCAACATATCC+AGG | - | tig0046901:480-499 | Msa1466420:intergenic | 45.0% | |
| TGGATATGTTGGGTACGAAG+AGG | + | tig0046901:479-498 | Msa1466420:CDS | 45.0% | |
| GGATATGTTGGGTACGAAGA+GGG | + | tig0046901:480-499 | Msa1466420:CDS | 45.0% | |
| ! | TGGAAGAGTAACTGACTCAC+AGG | + | tig0046901:614-633 | Msa1466420:CDS | 45.0% |
| ! | GGAAGAGTAACTGACTCACA+GGG | + | tig0046901:615-634 | Msa1466420:CDS | 45.0% |
| GTACTGCGATCCAACATTTG+AGG | - | tig0046901:679-698 | Msa1466420:intergenic | 45.0% | |
| ! | CCGCTGCTTTATGGTTTCAT+AGG | - | tig0046901:742-761 | Msa1466420:intergenic | 45.0% |
| AACCATAAAGCAGCGGGTAA+TGG | + | tig0046901:746-765 | Msa1466420:CDS | 45.0% | |
| ! | ATCCATTACCCGCTGCTTTA+TGG | - | tig0046901:751-770 | Msa1466420:intergenic | 45.0% |
| CTAATTTGATCACGGTCGAG+AGG | - | tig0046901:837-856 | Msa1466420:intergenic | 45.0% | |
| TCTTGAACGTTGGATAGCCT+CGG | - | tig0046901:271-290 | Msa1466420:intergenic | 45.0% | |
| AAAGACCTGCTCTTGAACGT+TGG | - | tig0046901:281-300 | Msa1466420:intergenic | 45.0% | |
| TTCATGTTTATGGGGCCTAC+AGG | + | tig0046901:327-346 | Msa1466420:CDS | 45.0% | |
| TCTTCGTACCCAACATATCC+AGG | - | tig0046901:480-499 | Msa1466420:intergenic | 45.0% | |
| TGGATATGTTGGGTACGAAG+AGG | + | tig0046901:479-498 | Msa1466420:CDS | 45.0% | |
| GGATATGTTGGGTACGAAGA+GGG | + | tig0046901:480-499 | Msa1466420:CDS | 45.0% | |
| ! | TGGAAGAGTAACTGACTCAC+AGG | + | tig0046901:614-633 | Msa1466420:CDS | 45.0% |
| ! | GGAAGAGTAACTGACTCACA+GGG | + | tig0046901:615-634 | Msa1466420:CDS | 45.0% |
| GTACTGCGATCCAACATTTG+AGG | - | tig0046901:679-698 | Msa1466420:intergenic | 45.0% | |
| ! | CCGCTGCTTTATGGTTTCAT+AGG | - | tig0046901:742-761 | Msa1466420:intergenic | 45.0% |
| AACCATAAAGCAGCGGGTAA+TGG | + | tig0046901:746-765 | Msa1466420:CDS | 45.0% | |
| ! | ATCCATTACCCGCTGCTTTA+TGG | - | tig0046901:751-770 | Msa1466420:intergenic | 45.0% |
| CTAATTTGATCACGGTCGAG+AGG | - | tig0046901:837-856 | Msa1466420:intergenic | 45.0% | |
| GCAACGACAACTTGAGAGTG+CGG | + | tig0046901:41-60 | Msa1466420:CDS | 50.0% | |
| AGCCTCGGCTACTGCTTTAA+CGG | - | tig0046901:256-275 | Msa1466420:intergenic | 50.0% | |
| GCTATCCAACGTTCAAGAGC+AGG | + | tig0046901:273-292 | Msa1466420:CDS | 50.0% | |
| AAGCTAGCAATTGGACGGTG+AGG | - | tig0046901:309-328 | Msa1466420:intergenic | 50.0% | |
| TTTATGGGGCCTACAGGTGT+AGG | + | tig0046901:333-352 | Msa1466420:CDS | 50.0% | |
| TCGTACCCAACATATCCAGG+TGG | - | tig0046901:477-496 | Msa1466420:intergenic | 50.0% | |
| TATGTTGGGTACGAAGAGGG+AGG | + | tig0046901:483-502 | Msa1466420:CDS | 50.0% | |
| GGATGATGACACAGCACCTA+AGG | + | tig0046901:710-729 | Msa1466420:CDS | 50.0% | |
| CATAAACTCGGGGCGAAAGA+TGG | - | tig0046901:784-803 | Msa1466420:intergenic | 50.0% | |
| GCAACGACAACTTGAGAGTG+CGG | + | tig0046901:41-60 | Msa1466420:CDS | 50.0% | |
| AGCCTCGGCTACTGCTTTAA+CGG | - | tig0046901:256-275 | Msa1466420:intergenic | 50.0% | |
| GCTATCCAACGTTCAAGAGC+AGG | + | tig0046901:273-292 | Msa1466420:CDS | 50.0% | |
| AAGCTAGCAATTGGACGGTG+AGG | - | tig0046901:309-328 | Msa1466420:intergenic | 50.0% | |
| TTTATGGGGCCTACAGGTGT+AGG | + | tig0046901:333-352 | Msa1466420:CDS | 50.0% | |
| TCGTACCCAACATATCCAGG+TGG | - | tig0046901:477-496 | Msa1466420:intergenic | 50.0% | |
| TATGTTGGGTACGAAGAGGG+AGG | + | tig0046901:483-502 | Msa1466420:CDS | 50.0% | |
| GGATGATGACACAGCACCTA+AGG | + | tig0046901:710-729 | Msa1466420:CDS | 50.0% | |
| CATAAACTCGGGGCGAAAGA+TGG | - | tig0046901:784-803 | Msa1466420:intergenic | 50.0% | |
| TCGGCTACTGCTTTAACGGC+AGG | - | tig0046901:252-271 | Msa1466420:intergenic | 55.0% | |
| TGCCGTTAAAGCAGTAGCCG+AGG | + | tig0046901:251-270 | Msa1466420:CDS | 55.0% | |
| ! | AGATTGATTGGGGCACCACC+TGG | + | tig0046901:459-478 | Msa1466420:CDS | 55.0% |
| GGGCACCACCTGGATATGTT+GGG | + | tig0046901:469-488 | Msa1466420:CDS | 55.0% | |
| AGGTCTTCGGCGAACTGTCT+CGG | - | tig0046901:517-536 | Msa1466420:intergenic | 55.0% | |
| TTTGATCACGGTCGAGAGGC+TGG | - | tig0046901:833-852 | Msa1466420:intergenic | 55.0% | |
| TCGGCTACTGCTTTAACGGC+AGG | - | tig0046901:252-271 | Msa1466420:intergenic | 55.0% | |
| TGCCGTTAAAGCAGTAGCCG+AGG | + | tig0046901:251-270 | Msa1466420:CDS | 55.0% | |
| ! | AGATTGATTGGGGCACCACC+TGG | + | tig0046901:459-478 | Msa1466420:CDS | 55.0% |
| GGGCACCACCTGGATATGTT+GGG | + | tig0046901:469-488 | Msa1466420:CDS | 55.0% | |
| AGGTCTTCGGCGAACTGTCT+CGG | - | tig0046901:517-536 | Msa1466420:intergenic | 55.0% | |
| TTTGATCACGGTCGAGAGGC+TGG | - | tig0046901:833-852 | Msa1466420:intergenic | 55.0% | |
| ! | GGGGCACCACCTGGATATGT+TGG | + | tig0046901:468-487 | Msa1466420:CDS | 60.0% |
| ! | GGGGCACCACCTGGATATGT+TGG | + | tig0046901:468-487 | Msa1466420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046901 | gene | 21 | 875 | 21 | ID=Msa1466420;Name=Msa1466420 |
| tig0046901 | mRNA | 21 | 875 | 21 | ID=Msa1466420-mRNA-1;Parent=Msa1466420;Name=Msa1466420-mRNA-1;_AED=0.01;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|285 |
| tig0046901 | exon | 21 | 875 | 21 | ID=Msa1466420-mRNA-1:exon:25068;Parent=Msa1466420-mRNA-1 |
| tig0046901 | CDS | 21 | 875 | 21 | ID=Msa1466420-mRNA-1:cds;Parent=Msa1466420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
