AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000078.t1 MTR_2g438740 93.739 559 33 2 16 573 24 581 0.0 1073
MS.gene000078.t1 MTR_2g438720 52.641 568 256 6 16 572 140 705 0.0 598
MS.gene000078.t1 MTR_2g438700 51.585 568 262 6 16 572 138 703 0.0 586
MS.gene000078.t1 MTR_2g438760 52.753 563 248 5 12 572 29 575 0.0 582
MS.gene000078.t1 MTR_2g438400 51.792 558 258 5 23 572 4 558 0.0 581
MS.gene000078.t1 MTR_2g438440 51.056 568 264 6 16 572 135 699 0.0 575
MS.gene000078.t1 MTR_2g438640 49.912 567 272 5 16 572 140 704 0.0 565
MS.gene000078.t1 MTR_2g438640 48.148 567 256 6 16 572 140 678 0.0 531
MS.gene000078.t1 MTR_2g438470 41.799 378 178 5 75 446 157 498 3.43e-91 289
MS.gene000078.t1 MTR_5g028190 34.630 540 315 15 52 560 1 533 1.70e-89 286
MS.gene000078.t1 MTR_5g091220 32.815 579 326 13 35 559 33 602 2.75e-80 264
MS.gene000078.t1 MTR_2g438640 60.294 204 80 1 369 572 399 601 9.60e-74 246
MS.gene000078.t1 MTR_2g438640 40.230 261 145 4 16 266 140 399 1.26e-61 214
MS.gene000078.t1 MTR_3g055310 32.653 490 275 14 114 555 4 486 1.31e-66 225
MS.gene000078.t1 MTR_3g055310 37.846 325 196 5 233 555 23 343 1.24e-65 218
MS.gene000078.t1 MTR_3g055310 37.846 325 196 5 233 555 86 406 4.78e-65 218
MS.gene000078.t1 MTR_3g055310 37.846 325 196 5 233 555 138 458 2.43e-64 218
MS.gene000078.t1 MTR_3g055310 37.846 325 196 5 233 555 164 484 4.23e-64 218
MS.gene000078.t1 MTR_3g055310 37.846 325 196 5 233 555 191 511 5.91e-64 218
MS.gene000078.t1 MTR_5g028450 40.411 292 171 2 271 559 4 295 5.88e-63 209
MS.gene000078.t1 MTR_5g028130 39.726 292 169 3 271 557 45 334 2.67e-62 209
MS.gene000078.t1 MTR_3g455790 29.009 555 336 13 34 540 34 578 6.87e-61 212
MS.gene000078.t1 MTR_5g028930 30.756 582 335 17 8 546 45 601 1.61e-59 209
MS.gene000078.t1 MTR_3g452020 29.061 554 338 13 34 540 34 579 8.66e-58 204
MS.gene000078.t1 MTR_1g113820 28.918 536 347 9 39 566 59 568 3.11e-55 196
MS.gene000078.t1 MTR_2g020510 33.548 310 200 3 247 554 370 675 4.73e-48 178
MS.gene000078.t1 MTR_2g020510 29.891 184 117 4 40 213 13 194 2.60e-14 76.6
MS.gene000078.t1 MTR_1g113760 27.586 522 342 12 32 542 21 517 3.27e-46 171
MS.gene000078.t1 MTR_3g058570 35.135 296 182 3 269 557 85 377 1.15e-44 163
MS.gene000078.t1 MTR_2g020450 33.651 315 196 5 254 566 380 683 3.10e-43 164
MS.gene000078.t1 MTR_2g020450 30.601 183 117 3 40 213 13 194 1.02e-15 80.9
MS.gene000078.t1 MTR_2g020470 33.226 310 181 6 247 554 372 657 3.15e-42 161
MS.gene000078.t1 MTR_2g020470 29.787 188 120 4 36 213 9 194 6.32e-13 72.0
MS.gene000078.t1 MTR_5g085350 36.082 291 181 3 269 555 425 714 3.64e-41 159
MS.gene000078.t1 MTR_5g085350 36.082 291 181 3 269 555 438 727 5.02e-41 158
MS.gene000078.t1 MTR_5g085340 34.576 295 186 2 269 557 444 737 3.21e-39 153
MS.gene000078.t1 MTR_2g017930 34.333 300 187 5 253 551 347 637 3.58e-39 152
MS.gene000078.t1 MTR_3g452020 29.936 314 210 5 233 540 94 403 1.18e-38 147
MS.gene000078.t1 MTR_3g051060 30.573 314 209 5 247 555 416 725 7.26e-38 149
MS.gene000078.t1 MTR_6g017215 40.909 176 103 1 369 544 6 180 2.60e-37 138
MS.gene000078.t1 MTR_5g028690 44.444 153 85 0 364 516 36 188 7.02e-37 137
MS.gene000078.t1 MTR_5g085360 33.471 242 152 3 332 572 504 737 3.09e-35 141
MS.gene000078.t1 MTR_5g028110 36.598 194 100 4 369 560 2 174 2.44e-31 120
MS.gene000078.t1 MTR_3g050500 29.180 305 207 5 258 554 416 719 3.52e-31 129
MS.gene000078.t1 MTR_5g028900 42.466 146 72 3 371 516 4 137 1.15e-28 112
MS.gene000078.t1 MTR_5g028840 34.225 187 116 3 369 548 2 188 6.89e-28 111
MS.gene000078.t1 MTR_2g438580 55.952 84 36 1 382 465 1 83 1.65e-26 103
MS.gene000078.t1 MTR_3g055750 26.891 357 232 11 34 369 34 382 8.45e-23 100
MS.gene000078.t1 MTR_1g113730 31.132 212 138 3 271 479 49 255 3.27e-21 95.9
MS.gene000078.t1 MTR_3g455820 38.318 107 66 0 34 140 34 140 9.01e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000078.t1 AT3G18670 32.479 585 371 9 2 573 24 597 1.90e-96 306
MS.gene000078.t1 AT3G18670 30.818 636 369 10 2 573 24 652 9.25e-93 298
MS.gene000078.t1 AT5G35810 44.478 335 180 3 241 569 8 342 6.65e-87 273
MS.gene000078.t1 AT5G04700 32.418 546 317 10 65 559 112 656 7.93e-71 240
MS.gene000078.t1 AT5G04690 30.853 551 345 11 32 559 75 612 4.85e-67 229
MS.gene000078.t1 AT5G04690 29.412 578 352 12 32 559 75 646 2.43e-63 220
MS.gene000078.t1 AT5G04690 29.217 575 343 12 32 559 75 632 4.45e-63 219
MS.gene000078.t1 AT5G04680 31.660 518 297 10 98 559 12 528 1.52e-61 213
MS.gene000078.t1 AT5G04680 31.047 554 322 11 65 559 99 651 5.91e-61 214
MS.gene000078.t1 AT5G04730 29.525 569 342 13 57 569 34 599 7.94e-61 212
MS.gene000078.t1 AT5G04680 30.727 550 315 10 65 559 99 637 6.02e-59 208
MS.gene000078.t1 AT3G54065 46.320 231 118 1 349 573 2 232 5.29e-56 189
MS.gene000078.t1 AT5G04680 35.447 347 204 6 224 559 343 680 1.13e-50 186
MS.gene000078.t1 AT5G35830 37.297 185 111 3 34 216 89 270 3.70e-28 114

Find 105 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATAAACTCGGGACTTTA+TGG 0.155576 2.3:+52591905 MS.gene000078:CDS
TCAATTTGATACATGAAATA+AGG 0.181057 2.3:+52592649 MS.gene000078:CDS
ATGAATTGTTGCCATCAATT+AGG 0.186457 2.3:+52591756 MS.gene000078:CDS
TCGAGTATTTCTTTACATTT+AGG 0.190510 2.3:-52591851 None:intergenic
GCTGGTTTATCTAAATAATT+AGG 0.228180 2.3:-52593127 None:intergenic
GCTTTGAAAGATTGCATAAA+TGG 0.257637 2.3:+52592672 MS.gene000078:CDS
CTGAGTTCCCATAACAAATT+AGG 0.270857 2.3:-52592570 None:intergenic
TGAATTGTTGCCATCAATTA+GGG 0.271979 2.3:+52591757 MS.gene000078:CDS
CATATTATCATGGTTTGAAA+TGG 0.303488 2.3:+52593353 MS.gene000078:CDS
ACATTTGTAGTTCTTTATTT+AGG 0.305317 2.3:+52593470 MS.gene000078:CDS
CACTTATCCTAATTTGTTAT+GGG 0.313348 2.3:+52592563 MS.gene000078:CDS
GCACTTATCCTAATTTGTTA+TGG 0.313386 2.3:+52592562 MS.gene000078:CDS
GCAAGAACAGAAATAAAATT+AGG 0.316156 2.3:-52593379 None:intergenic
GATTTGCTCCCGCTGCAATA+TGG 0.321893 2.3:-52591595 None:intergenic
CTTCACAAAGCAGCACTAAA+AGG 0.335945 2.3:+52591488 MS.gene000078:CDS
TGTTCACTTTGTCGAGGAAT+TGG 0.345157 2.3:+52591619 MS.gene000078:CDS
CCATCATCTCTGAGTCATCT+AGG 0.345769 2.3:-52592461 None:intergenic
CAATTTGATACATGAAATAA+GGG 0.346894 2.3:+52592650 MS.gene000078:CDS
CACGCAGAATTGCTTCAAAA+AGG 0.357566 2.3:+52592986 MS.gene000078:CDS
ACTAATGCACCGTGATCATT+TGG 0.358694 2.3:+52591646 MS.gene000078:CDS
GAAGGGGAACACATTGGTTT+AGG 0.361388 2.3:-52591469 None:intergenic
TGTTCAACTTGCTGAGATAT+TGG 0.369153 2.3:+52591724 MS.gene000078:CDS
GTTTGTGGTTGTCAAAGTCT+TGG 0.400481 2.3:+52592175 MS.gene000078:CDS
TGAGACGGGTTTACATCTAT+TGG 0.400693 2.3:+52592138 MS.gene000078:CDS
GGTTGCCCAGCCATTTGTTA+TGG 0.404362 2.3:-52591567 None:intergenic
CCTTGTCCACCCCTAATTGA+TGG 0.405706 2.3:-52591767 None:intergenic
TTTGTGGTTGTCAAAGTCTT+GGG 0.416618 2.3:+52592176 MS.gene000078:CDS
GCTCGAAAACATTCGGTTTG+TGG 0.422912 2.3:+52592160 MS.gene000078:CDS
ACAATTATCGCTGCAGAAGT+TGG 0.426353 2.3:+52592510 MS.gene000078:CDS
CACAAATAACGCCACTAGTC+CGG 0.427785 2.3:-52593284 None:intergenic
AAATGATGCTCGAATTATCA+TGG 0.437423 2.3:+52592787 MS.gene000078:CDS
AGGTGTTACTCCTCTTTACT+TGG 0.437846 2.3:+52591787 MS.gene000078:CDS
ATATTATCATGGTTTGAAAT+GGG 0.443778 2.3:+52593354 MS.gene000078:CDS
CTCTGCAATGAAATTGATTG+AGG 0.445736 2.3:-52591429 None:intergenic
TTAAGCTTATACGACACATC+TGG 0.452772 2.3:+52592424 MS.gene000078:CDS
CTAAAAGGTGATTGGAAAGA+AGG 0.452948 2.3:+52591503 MS.gene000078:CDS
TCTATTGGCTCGAAAACATT+CGG 0.454999 2.3:+52592153 MS.gene000078:CDS
TTCTACATAACATATTATCA+TGG 0.459801 2.3:+52593343 MS.gene000078:CDS
AAGCAGCACTAAAAGGTGAT+TGG 0.463773 2.3:+52591495 MS.gene000078:CDS
TTGCCTTTGAAGTTGATATC+CGG 0.466565 2.3:+52593265 MS.gene000078:CDS
GTTTCGACTCTCATAGCTAC+AGG 0.467654 2.3:+52593049 MS.gene000078:CDS
CTGATTTCTGCCATAACAAA+TGG 0.468918 2.3:+52591557 MS.gene000078:CDS
CCTAGATGACTCAGAGATGA+TGG 0.470237 2.3:+52592461 MS.gene000078:CDS
GAGACTATATTGAGCCGATC+AGG 0.472006 2.3:-52592750 None:intergenic
GCAAACAGCGAATTCTTGTA+TGG 0.482111 2.3:+52593024 MS.gene000078:CDS
AAATCAGCAATGTTGGATCT+TGG 0.484030 2.3:-52591541 None:intergenic
TCTGCAATGAAATTGATTGA+GGG 0.490761 2.3:-52591428 None:intergenic
CAATGTTAGCACCGCCTGAT+CGG 0.494071 2.3:+52592736 MS.gene000078:CDS
TCAGCTGCATTTAGCTTACC+AGG 0.494468 2.3:+52593079 MS.gene000078:CDS
GCTCCGCATATCGCGAGATA+AGG 0.498008 2.3:-52593225 None:intergenic
TTTCTGCCATAACAAATGGC+TGG 0.499899 2.3:+52591561 MS.gene000078:CDS
AAAGCAAATACGAGGAATGC+TGG 0.502490 2.3:-52593145 None:intergenic
ACCGCACTCCATATTGCAGC+GGG 0.502589 2.3:+52591587 MS.gene000078:CDS
ATGGCAGAAATCAGCAATGT+TGG 0.503043 2.3:-52591548 None:intergenic
GCTCGAATTATCATGGTTTG+AGG 0.512843 2.3:+52592794 MS.gene000078:CDS
AAATAAAGAACTACAAATGT+AGG 0.513663 2.3:-52593467 None:intergenic
TTTGGAATTGCAAGATTGCT+CGG 0.517151 2.3:+52591664 MS.gene000078:CDS
CTCAATCAATTTCATTGCAG+AGG 0.521162 2.3:+52591430 MS.gene000078:CDS
TTCTGCCATAACAAATGGCT+GGG 0.532460 2.3:+52591562 MS.gene000078:CDS
TTGGAATTGCAAGATTGCTC+GGG 0.533926 2.3:+52591665 MS.gene000078:CDS
ATTTGCTTTATCCGACTCCA+TGG 0.541197 2.3:+52593159 MS.gene000078:CDS
GTGTTATCATTGTTTCCACC+TGG 0.542558 2.3:-52593097 None:intergenic
TGTAAAACAGCCAAGTAAAG+AGG 0.542761 2.3:-52591797 None:intergenic
TTTAGTGCTGCTTTGTGAAG+GGG 0.544540 2.3:-52591485 None:intergenic
CTTTGTGAAGGGGAACACAT+TGG 0.546773 2.3:-52591475 None:intergenic
TGATCGGCTCAATATAGTCT+CGG 0.546856 2.3:+52592752 MS.gene000078:CDS
CATCATCTCTGAGTCATCTA+GGG 0.550587 2.3:-52592460 None:intergenic
CCATCAATTAGGGGTGGACA+AGG 0.554840 2.3:+52591767 MS.gene000078:CDS
GATCGGCTCAATATAGTCTC+GGG 0.558296 2.3:+52592753 MS.gene000078:CDS
ATTTGAACTTACATAAATGC+AGG 0.558916 2.3:-52592213 None:intergenic
GTTCCTCACTTGTATAAACT+CGG 0.560727 2.3:+52591895 MS.gene000078:CDS
GCGATAATTGTTACTTGAGA+CGG 0.561513 2.3:-52592498 None:intergenic
AAATACTCGAGGAAAACGAT+TGG 0.569851 2.3:+52591864 MS.gene000078:CDS
TAGCGAATCATACGTTTACT+CGG 0.572760 2.3:-52593493 None:intergenic
CGAGATAAGTGCCATGGAGT+CGG 0.585094 2.3:-52593170 None:intergenic
CGCATATCGCGAGATAAGGA+TGG 0.586729 2.3:-52593221 None:intergenic
CATCCTTATCTCGCGATATG+CGG 0.590914 2.3:+52593222 MS.gene000078:CDS
GTTATGGGAACTCAGTAACA+AGG 0.591126 2.3:+52592578 MS.gene000078:CDS
AAGCAAACAGTGAGATGGCA+TGG 0.593244 2.3:+52591819 MS.gene000078:CDS
GAAGTTGATATCCGGACTAG+TGG 0.593266 2.3:+52593273 MS.gene000078:CDS
AGACATATAAACAACGGTAT+CGG 0.594156 2.3:-52593409 None:intergenic
TGTCGTATAAGCTTAAGCAT+TGG 0.594683 2.3:-52592417 None:intergenic
CGGAGGTGATAGCAATGAGA+CGG 0.603335 2.3:+52592123 MS.gene000078:CDS
AGTCCGGATATCAACTTCAA+AGG 0.603725 2.3:-52593268 None:intergenic
TAAGCTTATACGACACATCT+GGG 0.604184 2.3:+52592425 MS.gene000078:CDS
GGAGGTGATAGCAATGAGAC+GGG 0.612349 2.3:+52592124 MS.gene000078:CDS
TCAAATTGAAGATACTAGCA+TGG 0.613242 2.3:-52592635 None:intergenic
TGAAGACGAGATAAGTGCCA+TGG 0.615834 2.3:-52593176 None:intergenic
TTTACAAGCAAACAGTGAGA+TGG 0.616121 2.3:+52591814 MS.gene000078:CDS
TTGTTGCCATCAATTAGGGG+TGG 0.620541 2.3:+52591761 MS.gene000078:CDS
AACCGCACTCCATATTGCAG+CGG 0.625156 2.3:+52591586 MS.gene000078:CDS
AAATCATGTTCACTTTGTCG+AGG 0.626112 2.3:+52591613 MS.gene000078:CDS
ACTATATTGAGCCGATCAGG+CGG 0.628275 2.3:-52592747 None:intergenic
TTCCTCACTTGTATAAACTC+GGG 0.633269 2.3:+52591896 MS.gene000078:CDS
CTTGCAATTCCAAATGATCA+CGG 0.637982 2.3:-52591655 None:intergenic
GTCCCGAGTTTATACAAGTG+AGG 0.646956 2.3:-52591898 None:intergenic
TTATGGGAACTCAGTAACAA+GGG 0.656955 2.3:+52592579 MS.gene000078:CDS
GAATTGTTGCCATCAATTAG+GGG 0.658510 2.3:+52591758 MS.gene000078:CDS
AACTGTAGACATATAAACAA+CGG 0.659566 2.3:-52593415 None:intergenic
TCTTTCGTAAATAGTTCGCG+AGG 0.683898 2.3:-52592962 None:intergenic
GCTGCATTTAGCTTACCAGG+TGG 0.684232 2.3:+52593082 MS.gene000078:CDS
TAAATGTAAAGAAATACTCG+AGG 0.687289 2.3:+52591853 MS.gene000078:CDS
TCCCGCTGCAATATGGAGTG+CGG 0.708642 2.3:-52591588 None:intergenic
AGTCGGATAAAGCAAATACG+AGG 0.727881 2.3:-52593153 None:intergenic
AATTGAAGATACTAGCATGG+CGG 0.757307 2.3:-52592632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTATCAAACATAATT+TGG + chr2.3:52592037-52592056 MS.gene000078:intron 10.0%
!! GTAATATTAATTAAACATTC+AGG + chr2.3:52592381-52592400 MS.gene000078:intron 15.0%
!! AAATAAAGAACTACAAATGT+AGG - chr2.3:52593470-52593489 None:intergenic 20.0%
!! ATTGAAATGAAAAATTCTGA+AGG + chr2.3:52592932-52592951 MS.gene000078:CDS 20.0%
!! CAAACATAATTTGGATATTA+TGG + chr2.3:52592046-52592065 MS.gene000078:intron 20.0%
!! CAATTTGATACATGAAATAA+GGG + chr2.3:52592650-52592669 MS.gene000078:CDS 20.0%
!! TCAATTTGATACATGAAATA+AGG + chr2.3:52592649-52592668 MS.gene000078:CDS 20.0%
!! TTCTACATAACATATTATCA+TGG + chr2.3:52593343-52593362 MS.gene000078:CDS 20.0%
!!! ACATTTGTAGTTCTTTATTT+AGG + chr2.3:52593470-52593489 MS.gene000078:CDS 20.0%
!!! ATATTATCATGGTTTGAAAT+GGG + chr2.3:52593354-52593373 MS.gene000078:CDS 20.0%
!!! TTTTTCATTTCAATCATATG+TGG - chr2.3:52592926-52592945 None:intergenic 20.0%
! AACTGTAGACATATAAACAA+CGG - chr2.3:52593418-52593437 None:intergenic 25.0%
! ATTTGAACTTACATAAATGC+AGG - chr2.3:52592216-52592235 None:intergenic 25.0%
! CATATTATCATGGTTTGAAA+TGG + chr2.3:52593353-52593372 MS.gene000078:CDS 25.0%
! GCAAGAACAGAAATAAAATT+AGG - chr2.3:52593382-52593401 None:intergenic 25.0%
! TAAATGTAAAGAAATACTCG+AGG + chr2.3:52591853-52591872 MS.gene000078:CDS 25.0%
! TCGAGTATTTCTTTACATTT+AGG - chr2.3:52591854-52591873 None:intergenic 25.0%
!! GCTGGTTTATCTAAATAATT+AGG - chr2.3:52593130-52593149 None:intergenic 25.0%
!!! CACTTATCCTAATTTGTTAT+GGG + chr2.3:52592563-52592582 MS.gene000078:CDS 25.0%
AAATGATGCTCGAATTATCA+TGG + chr2.3:52592787-52592806 MS.gene000078:CDS 30.0%
AGACATATAAACAACGGTAT+CGG - chr2.3:52593412-52593431 None:intergenic 30.0%
ATGAATTGTTGCCATCAATT+AGG + chr2.3:52591756-52591775 MS.gene000078:CDS 30.0%
CTACTCTCTCTCAAATATAT+TGG - chr2.3:52592016-52592035 None:intergenic 30.0%
TCAAATTGAAGATACTAGCA+TGG - chr2.3:52592638-52592657 None:intergenic 30.0%
TCTGCAATGAAATTGATTGA+GGG - chr2.3:52591431-52591450 None:intergenic 30.0%
TGAATTGTTGCCATCAATTA+GGG + chr2.3:52591757-52591776 MS.gene000078:CDS 30.0%
TTGCAGAGGAACATAAAAAA+AGG + chr2.3:52591444-52591463 MS.gene000078:CDS 30.0%
! AGATTGCATAAATGGTTTTC+TGG + chr2.3:52592680-52592699 MS.gene000078:CDS 30.0%
! ATAAATGGTTTTCTGGATGA+TGG + chr2.3:52592687-52592706 MS.gene000078:CDS 30.0%
! TATGTCTACAGTTTTCTCTA+TGG + chr2.3:52593425-52593444 MS.gene000078:CDS 30.0%
!! AGTACTCACTTTAAAACAGA+TGG - chr2.3:52592268-52592287 None:intergenic 30.0%
!! GCACTTATCCTAATTTGTTA+TGG + chr2.3:52592562-52592581 MS.gene000078:CDS 30.0%
!! GCTTTGAAAGATTGCATAAA+TGG + chr2.3:52592672-52592691 MS.gene000078:CDS 30.0%
AAATACTCGAGGAAAACGAT+TGG + chr2.3:52591864-52591883 MS.gene000078:CDS 35.0%
AAATCAGCAATGTTGGATCT+TGG - chr2.3:52591544-52591563 None:intergenic 35.0%
AAATCATGTTCACTTTGTCG+AGG + chr2.3:52591613-52591632 MS.gene000078:CDS 35.0%
AATTGAAGATACTAGCATGG+CGG - chr2.3:52592635-52592654 None:intergenic 35.0%
ATCTCATCTCTCAGTCTATT+AGG - chr2.3:52592300-52592319 None:intergenic 35.0%
CTAAAAGGTGATTGGAAAGA+AGG + chr2.3:52591503-52591522 MS.gene000078:CDS 35.0%
CTCAATCAATTTCATTGCAG+AGG + chr2.3:52591430-52591449 MS.gene000078:CDS 35.0%
CTCTGCAATGAAATTGATTG+AGG - chr2.3:52591432-52591451 None:intergenic 35.0%
CTGAGTTCCCATAACAAATT+AGG - chr2.3:52592573-52592592 None:intergenic 35.0%
CTGATTTCTGCCATAACAAA+TGG + chr2.3:52591557-52591576 MS.gene000078:CDS 35.0%
CTTGCAATTCCAAATGATCA+CGG - chr2.3:52591658-52591677 None:intergenic 35.0%
GAATTGTTGCCATCAATTAG+GGG + chr2.3:52591758-52591777 MS.gene000078:CDS 35.0%
GTTCCTCACTTGTATAAACT+CGG + chr2.3:52591895-52591914 MS.gene000078:CDS 35.0%
TAAGCTTATACGACACATCT+GGG + chr2.3:52592425-52592444 MS.gene000078:CDS 35.0%
TAGCGAATCATACGTTTACT+CGG - chr2.3:52593496-52593515 None:intergenic 35.0%
TGCTTCAAAAAGGAGAATCA+TGG + chr2.3:52592996-52593015 MS.gene000078:CDS 35.0%
TGTAAAACAGCCAAGTAAAG+AGG - chr2.3:52591800-52591819 None:intergenic 35.0%
TGTATAAACTCGGGACTTTA+TGG + chr2.3:52591905-52591924 MS.gene000078:CDS 35.0%
TGTCGTATAAGCTTAAGCAT+TGG - chr2.3:52592420-52592439 None:intergenic 35.0%
TTAAGCTTATACGACACATC+TGG + chr2.3:52592424-52592443 MS.gene000078:CDS 35.0%
TTATGGGAACTCAGTAACAA+GGG + chr2.3:52592579-52592598 MS.gene000078:CDS 35.0%
TTCCTCACTTGTATAAACTC+GGG + chr2.3:52591896-52591915 MS.gene000078:CDS 35.0%
TTTACAAGCAAACAGTGAGA+TGG + chr2.3:52591814-52591833 MS.gene000078:CDS 35.0%
TTTGTGGTTGTCAAAGTCTT+GGG + chr2.3:52592176-52592195 MS.gene000078:CDS 35.0%
! GCGATAATTGTTACTTGAGA+CGG - chr2.3:52592501-52592520 None:intergenic 35.0%
! TTTGGAATTGCAAGATTGCT+CGG + chr2.3:52591664-52591683 MS.gene000078:CDS 35.0%
!! ACATATGTCATTGATTTCGC+AGG + chr2.3:52592880-52592899 MS.gene000078:intron 35.0%
!! TCTATTGGCTCGAAAACATT+CGG + chr2.3:52592153-52592172 MS.gene000078:CDS 35.0%
!! TGTTCAACTTGCTGAGATAT+TGG + chr2.3:52591724-52591743 MS.gene000078:CDS 35.0%
!! TTGCCTTTGAAGTTGATATC+CGG + chr2.3:52593265-52593284 MS.gene000078:CDS 35.0%
!!! TTTTAGTGCTGCTTTGTGAA+GGG - chr2.3:52591489-52591508 None:intergenic 35.0%
AAAGCAAATACGAGGAATGC+TGG - chr2.3:52593148-52593167 None:intergenic 40.0%
AAGCAGCACTAAAAGGTGAT+TGG + chr2.3:52591495-52591514 MS.gene000078:CDS 40.0%
ACAATTATCGCTGCAGAAGT+TGG + chr2.3:52592510-52592529 MS.gene000078:CDS 40.0%
ACTAATGCACCGTGATCATT+TGG + chr2.3:52591646-52591665 MS.gene000078:CDS 40.0%
AGCAGCATTTCAAGAACTAG+TGG - chr2.3:52591944-52591963 None:intergenic 40.0%
AGTCCGGATATCAACTTCAA+AGG - chr2.3:52593271-52593290 None:intergenic 40.0%
AGTCGGATAAAGCAAATACG+AGG - chr2.3:52593156-52593175 None:intergenic 40.0%
ATGGCAGAAATCAGCAATGT+TGG - chr2.3:52591551-52591570 None:intergenic 40.0%
ATTTGCTTTATCCGACTCCA+TGG + chr2.3:52593159-52593178 MS.gene000078:CDS 40.0%
CACGCAGAATTGCTTCAAAA+AGG + chr2.3:52592986-52593005 MS.gene000078:CDS 40.0%
CATCATCTCTGAGTCATCTA+GGG - chr2.3:52592463-52592482 None:intergenic 40.0%
CTTCACAAAGCAGCACTAAA+AGG + chr2.3:52591488-52591507 MS.gene000078:CDS 40.0%
GCAAACAGCGAATTCTTGTA+TGG + chr2.3:52593024-52593043 MS.gene000078:CDS 40.0%
GCTCGAATTATCATGGTTTG+AGG + chr2.3:52592794-52592813 MS.gene000078:CDS 40.0%
GTGTTATCATTGTTTCCACC+TGG - chr2.3:52593100-52593119 None:intergenic 40.0%
GTTATGGGAACTCAGTAACA+AGG + chr2.3:52592578-52592597 MS.gene000078:CDS 40.0%
GTTTGTGGTTGTCAAAGTCT+TGG + chr2.3:52592175-52592194 MS.gene000078:CDS 40.0%
TCTTTCGTAAATAGTTCGCG+AGG - chr2.3:52592965-52592984 None:intergenic 40.0%
TGTTCACTTTGTCGAGGAAT+TGG + chr2.3:52591619-52591638 MS.gene000078:CDS 40.0%
TTCTGCCATAACAAATGGCT+GGG + chr2.3:52591562-52591581 MS.gene000078:CDS 40.0%
TTGGAATTGCAAGATTGCTC+GGG + chr2.3:52591665-52591684 MS.gene000078:CDS 40.0%
TTTCTGCCATAACAAATGGC+TGG + chr2.3:52591561-52591580 MS.gene000078:CDS 40.0%
! TGAGACGGGTTTACATCTAT+TGG + chr2.3:52592138-52592157 MS.gene000078:CDS 40.0%
! TGATCGGCTCAATATAGTCT+CGG + chr2.3:52592752-52592771 MS.gene000078:CDS 40.0%
!! AGGTGTTACTCCTCTTTACT+TGG + chr2.3:52591787-52591806 MS.gene000078:CDS 40.0%
!! TATGTCATTGATTTCGCAGG+AGG + chr2.3:52592883-52592902 MS.gene000078:intron 40.0%
!! TTTAGTGCTGCTTTGTGAAG+GGG - chr2.3:52591488-52591507 None:intergenic 40.0%
!!! CTTTTAGTGCTGCTTTGTGA+AGG - chr2.3:52591490-52591509 None:intergenic 40.0%
AAGCAAACAGTGAGATGGCA+TGG + chr2.3:52591819-52591838 MS.gene000078:CDS 45.0%
ACTATATTGAGCCGATCAGG+CGG - chr2.3:52592750-52592769 None:intergenic 45.0%
CACAAATAACGCCACTAGTC+CGG - chr2.3:52593287-52593306 None:intergenic 45.0%
CATCCTTATCTCGCGATATG+CGG + chr2.3:52593222-52593241 MS.gene000078:CDS 45.0%
CCATCATCTCTGAGTCATCT+AGG - chr2.3:52592464-52592483 None:intergenic 45.0%
CCTAGATGACTCAGAGATGA+TGG + chr2.3:52592461-52592480 MS.gene000078:CDS 45.0%
CTTTGTGAAGGGGAACACAT+TGG - chr2.3:52591478-52591497 None:intergenic 45.0%
GAGACTATATTGAGCCGATC+AGG - chr2.3:52592753-52592772 None:intergenic 45.0%
GTCCCGAGTTTATACAAGTG+AGG - chr2.3:52591901-52591920 None:intergenic 45.0%
GTTTCGACTCTCATAGCTAC+AGG + chr2.3:52593049-52593068 MS.gene000078:CDS 45.0%
TGAAGACGAGATAAGTGCCA+TGG - chr2.3:52593179-52593198 None:intergenic 45.0%
TTGTTGCCATCAATTAGGGG+TGG + chr2.3:52591761-52591780 MS.gene000078:CDS 45.0%
! GATCGGCTCAATATAGTCTC+GGG + chr2.3:52592753-52592772 MS.gene000078:CDS 45.0%
! GCTCGAAAACATTCGGTTTG+TGG + chr2.3:52592160-52592179 MS.gene000078:CDS 45.0%
! TCAGCTGCATTTAGCTTACC+AGG + chr2.3:52593079-52593098 MS.gene000078:CDS 45.0%
! TTGTGTTTTGCTGCAGCAGT+TGG + chr2.3:52591698-52591717 MS.gene000078:CDS 45.0%
!! GAAGGGGAACACATTGGTTT+AGG - chr2.3:52591472-52591491 None:intergenic 45.0%
!! GAAGTTGATATCCGGACTAG+TGG + chr2.3:52593273-52593292 MS.gene000078:CDS 45.0%
AACCGCACTCCATATTGCAG+CGG + chr2.3:52591586-52591605 MS.gene000078:CDS 50.0%
CAATGTTAGCACCGCCTGAT+CGG + chr2.3:52592736-52592755 MS.gene000078:CDS 50.0%
CCATCAATTAGGGGTGGACA+AGG + chr2.3:52591767-52591786 MS.gene000078:CDS 50.0%
CCTTGTCCACCCCTAATTGA+TGG - chr2.3:52591770-52591789 None:intergenic 50.0%
CGAGATAAGTGCCATGGAGT+CGG - chr2.3:52593173-52593192 None:intergenic 50.0%
CGCATATCGCGAGATAAGGA+TGG - chr2.3:52593224-52593243 None:intergenic 50.0%
CGGAGGTGATAGCAATGAGA+CGG + chr2.3:52592123-52592142 MS.gene000078:CDS 50.0%
GGAGGTGATAGCAATGAGAC+GGG + chr2.3:52592124-52592143 MS.gene000078:CDS 50.0%
! GATTTGCTCCCGCTGCAATA+TGG - chr2.3:52591598-52591617 None:intergenic 50.0%
! GCTGCATTTAGCTTACCAGG+TGG + chr2.3:52593082-52593101 MS.gene000078:CDS 50.0%
! GGTTGCCCAGCCATTTGTTA+TGG - chr2.3:52591570-52591589 None:intergenic 50.0%
!! GACACACTTGCTTTTGCTCG+CGG + chr2.3:52592103-52592122 MS.gene000078:CDS 50.0%
ACCGCACTCCATATTGCAGC+GGG + chr2.3:52591587-52591606 MS.gene000078:CDS 55.0%
GCTCCGCATATCGCGAGATA+AGG - chr2.3:52593228-52593247 None:intergenic 55.0%
TCCCGCTGCAATATGGAGTG+CGG - chr2.3:52591591-52591610 None:intergenic 55.0%
!! ACACTTGCTTTTGCTCGCGG+AGG + chr2.3:52592106-52592125 MS.gene000078:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 52591383 52593516 52591383 ID=MS.gene000078
chr2.3 mRNA 52591383 52593516 52591383 ID=MS.gene000078.t1;Parent=MS.gene000078
chr2.3 exon 52591383 52591926 52591383 ID=MS.gene000078.t1.exon1;Parent=MS.gene000078.t1
chr2.3 CDS 52591383 52591926 52591383 ID=cds.MS.gene000078.t1;Parent=MS.gene000078.t1
chr2.3 exon 52592074 52592223 52592074 ID=MS.gene000078.t1.exon2;Parent=MS.gene000078.t1
chr2.3 CDS 52592074 52592223 52592074 ID=cds.MS.gene000078.t1;Parent=MS.gene000078.t1
chr2.3 exon 52592403 52592815 52592403 ID=MS.gene000078.t1.exon3;Parent=MS.gene000078.t1
chr2.3 CDS 52592403 52592815 52592403 ID=cds.MS.gene000078.t1;Parent=MS.gene000078.t1
chr2.3 exon 52592902 52593516 52592902 ID=MS.gene000078.t1.exon4;Parent=MS.gene000078.t1
chr2.3 CDS 52592902 52593516 52592902 ID=cds.MS.gene000078.t1;Parent=MS.gene000078.t1
Gene Sequence

>MS.gene000078

ATGAGTTTTCTTATCAATTGCATAGATATTGAAGAGTTAATCAATCCCTCAATCAATTTCATTGCAGAGGAACATAAAAAAAGGTACCTAAACCAATGTGTTCCCCTTCACAAAGCAGCACTAAAAGGTGATTGGAAAGAAGGTAAAAAAATAATAGACCAAGATCCAACATTGCTGATTTCTGCCATAACAAATGGCTGGGCAACCGCACTCCATATTGCAGCGGGAGCAAATCATGTTCACTTTGTCGAGGAATTGGTAAAACTAATGCACCGTGATCATTTGGAATTGCAAGATTGCTCGGGAAACACTGCTTTGTGTTTTGCTGCAGCAGTTGGAAATGTTCAACTTGCTGAGATATTGGTGAAAAAGAATGAATTGTTGCCATCAATTAGGGGTGGACAAGGTGTTACTCCTCTTTACTTGGCTGTTTTACAAGCAAACAGTGAGATGGCATGGTATTTGTTTCCTAAATGTAAAGAAATACTCGAGGAAAACGATTGGAGTATAGTGTTCCTCACTTGTATAAACTCGGGACTTTATGGTAAGCGTGCACGACCACTAGTTCTTGAAATGCTGCTAACAAAAATATTTACATATAAATAAAAGCGAAGAGAGTAATTATATTTGCCAATATATTTGAGAGAGAGTAGTAAATATTATCAAACATAATTTGGATATTATGGTGCAGATTTAGCTCTACAGATGTTAACAGAAAAAGACACACTTGCTTTTGCTCGCGGAGGTGATAGCAATGAGACGGGTTTACATCTATTGGCTCGAAAACATTCGGTTTGTGGTTGTCAAAGTCTTGGGCATCGAAAAAATCTCCTGCATTTATGTAAGTTCAAATGTACTCACTTTTTTGACTAAACATATTCTCCATCTGTTTTAAAGTGAGTACTAATTAATAACCTAATAGACTGAGAGATGAGATTATTTATTTTGCATCTGATCTTTGATTCAATTCTACTAATTTAACATCTTATTCAATTCATGTAATATTAATTAAACATTCAGGTATGAGAGATTCTCCAATGCTTAAGCTTATACGACACATCTGGGATAAGTTTCTTACCCTAGATGACTCAGAGATGATGGAAGTCATGAGATCACCGTCTCAAGTAACAATTATCGCTGCAGAAGTTGGAAATTTTGAGTTTCTATCTGTCATTATGAGCACTTATCCTAATTTGTTATGGGAACTCAGTAACAAGGGTCAGAGCATAATTCACATCGCTGTTTTCAACCGCCATGCTAGTATCTTCAATTTGATACATGAAATAAGGGCTTTGAAAGATTGCATAAATGGTTTTCTGGATGATGGCGAGAATAATTTATTGCATTCTGCAGCAATGTTAGCACCGCCTGATCGGCTCAATATAGTCTCGGGAGCAGCTTTACAAATGATGCTCGAATTATCATGGTTTGAGGTATATATAGTATACATATATGTTTTTCTATCTCATATAAAAAAATACAAATCATATAAATAATACATATGTCATTGATTTCGCAGGAGGTAAAGAAGAACATGCAACCACATATGATTGAAATGAAAAATTCTGAAGGAAAGACACCTCGCGAACTATTTACGAAAGAACACGCAGAATTGCTTCAAAAAGGAGAATCATGGATGAAGCAAACAGCGAATTCTTGTATGGTTGTTTCGACTCTCATAGCTACAGGAGTATTTTCAGCTGCATTTAGCTTACCAGGTGGAAACAATGATAACACAAAATCTCCTAATTATTTAGATAAACCAGCATTCCTCGTATTTGCTTTATCCGACTCCATGGCACTTATCTCGTCTTCAACTTCAATCTTGATCTTTCTATCCATCCTTATCTCGCGATATGCGGAGCAAGATTTTCTCAAGTCATTGCCTTTGAAGTTGATATCCGGACTAGTGGCGTTATTTGTGTCTATAATCAGCATGATGATAGCATTTAGTAGTTCTTTCTACATAACATATTATCATGGTTTGAAATGGGTTCCTAATTTTATTTCTGTTCTTGCATTTTTACCGATACCGTTGTTTATATGTCTACAGTTTTCTCTATGGTCTGATATAGTGTATTCTGCCTACATTTGTAGTTCTTTATTTAGGCCGAGTAAACGTATGATTCGCTAG
Protein sequence

>MS.gene000078.t1

MSFLINCIDIEELINPSINFIAEEHKKRYLNQCVPLHKAALKGDWKEGKKIIDQDPTLLISAITNGWATALHIAAGANHVHFVEELVKLMHRDHLELQDCSGNTALCFAAAVGNVQLAEILVKKNELLPSIRGGQGVTPLYLAVLQANSEMAWYLFPKCKEILEENDWSIVFLTCINSGLYDLALQMLTEKDTLAFARGGDSNETGLHLLARKHSVCGCQSLGHRKNLLHLCMRDSPMLKLIRHIWDKFLTLDDSEMMEVMRSPSQVTIIAAEVGNFEFLSVIMSTYPNLLWELSNKGQSIIHIAVFNRHASIFNLIHEIRALKDCINGFLDDGENNLLHSAAMLAPPDRLNIVSGAALQMMLELSWFEEVKKNMQPHMIEMKNSEGKTPRELFTKEHAELLQKGESWMKQTANSCMVVSTLIATGVFSAAFSLPGGNNDNTKSPNYLDKPAFLVFALSDSMALISSSTSILIFLSILISRYAEQDFLKSLPLKLISGLVALFVSIISMMIAFSSSFYITYYHGLKWVPNFISVLAFLPIPLFICLQFSLWSDIVYSAYICSSLFRPSKRMIR