AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000079.t1 MTR_2g438700 92.938 708 50 0 1 708 1 708 0.0 1373
MS.gene000079.t1 MTR_2g438720 89.718 710 71 2 1 708 1 710 0.0 1316
MS.gene000079.t1 MTR_2g438640 86.338 710 94 2 1 708 1 709 0.0 1270
MS.gene000079.t1 MTR_2g438640 83.803 710 86 2 1 708 1 683 0.0 1217
MS.gene000079.t1 MTR_2g438440 79.858 705 140 2 5 708 1 704 0.0 1165
MS.gene000079.t1 MTR_2g438400 83.957 561 89 1 148 708 4 563 0.0 966
MS.gene000079.t1 MTR_2g438470 65.858 577 118 7 1 577 1 498 0.0 734
MS.gene000079.t1 MTR_2g438640 82.793 401 67 1 1 399 1 401 0.0 708
MS.gene000079.t1 MTR_2g438640 91.827 208 17 0 501 708 399 606 2.22e-123 381
MS.gene000079.t1 MTR_2g438740 50.348 574 274 5 131 703 17 580 0.0 581
MS.gene000079.t1 MTR_2g438760 47.711 568 270 8 138 703 33 575 1.61e-179 524
MS.gene000079.t1 MTR_5g028190 34.334 533 315 14 187 692 10 534 7.19e-73 246
MS.gene000079.t1 MTR_5g091220 31.196 577 344 11 160 690 33 602 1.40e-66 231
MS.gene000079.t1 MTR_3g055310 31.185 481 286 11 246 686 11 486 2.82e-57 202
MS.gene000079.t1 MTR_3g055310 31.330 466 275 11 261 686 24 484 2.31e-55 197
MS.gene000079.t1 MTR_3g055310 31.330 466 275 11 261 686 51 511 6.10e-55 197
MS.gene000079.t1 MTR_5g028130 36.137 321 194 6 374 689 21 335 2.22e-54 190
MS.gene000079.t1 MTR_3g055310 37.457 291 177 4 398 686 56 343 1.22e-53 189
MS.gene000079.t1 MTR_3g055310 37.457 291 177 4 398 686 119 406 2.28e-53 190
MS.gene000079.t1 MTR_3g055310 37.457 291 177 4 398 686 171 458 1.14e-52 189
MS.gene000079.t1 MTR_5g028930 28.030 528 341 8 194 689 95 615 7.24e-50 185
MS.gene000079.t1 MTR_5g028450 38.176 296 172 5 402 690 4 295 2.00e-47 170
MS.gene000079.t1 MTR_3g455790 25.719 556 375 9 159 679 34 586 2.70e-47 177
MS.gene000079.t1 MTR_1g113820 25.326 537 355 12 165 690 60 561 1.53e-41 160
MS.gene000079.t1 MTR_2g020510 34.286 315 190 7 389 690 378 688 2.15e-41 161
MS.gene000079.t1 MTR_1g113760 26.230 549 352 13 161 695 23 532 1.29e-40 157
MS.gene000079.t1 MTR_3g452020 24.590 549 375 11 159 671 34 579 1.19e-39 155
MS.gene000079.t1 MTR_5g085340 35.932 295 178 6 402 688 446 737 1.27e-39 156
MS.gene000079.t1 MTR_5g085350 35.517 290 180 3 402 686 427 714 6.39e-39 154
MS.gene000079.t1 MTR_5g085350 35.517 290 180 3 402 686 440 727 6.50e-39 154
MS.gene000079.t1 MTR_2g020450 35.333 300 184 5 399 690 393 690 2.48e-38 152
MS.gene000079.t1 MTR_2g438580 80.263 76 15 0 514 589 1 76 1.44e-36 132
MS.gene000079.t1 MTR_2g017930 35.316 269 161 4 418 682 378 637 2.77e-34 139
MS.gene000079.t1 MTR_3g051060 31.419 296 185 7 402 686 437 725 8.80e-34 138
MS.gene000079.t1 MTR_5g085360 33.188 229 149 4 464 690 504 730 3.09e-33 137
MS.gene000079.t1 MTR_3g058570 32.886 298 188 7 399 688 84 377 4.32e-33 132
MS.gene000079.t1 MTR_2g020470 31.023 303 174 8 399 690 392 670 1.88e-32 134
MS.gene000079.t1 MTR_3g050500 29.553 291 196 4 402 685 431 719 6.45e-30 126
MS.gene000079.t1 MTR_3g452020 30.800 250 169 3 396 644 130 376 5.18e-29 120
MS.gene000079.t1 MTR_6g017215 35.897 195 119 2 501 689 6 200 3.24e-28 114
MS.gene000079.t1 MTR_5g028110 36.316 190 101 3 501 689 2 172 4.77e-28 111
MS.gene000079.t1 MTR_5g028690 36.735 147 92 1 499 644 39 185 7.17e-23 98.6
MS.gene000079.t1 MTR_5g028840 32.308 195 123 4 501 688 2 194 2.13e-20 90.5
MS.gene000079.t1 MTR_5g028900 35.915 142 80 2 503 644 4 134 2.27e-19 85.9
MS.gene000079.t1 MTR_1g113730 24.775 222 155 5 394 610 41 255 9.02e-15 77.0
MS.gene000079.t1 MTR_3g055750 23.184 358 251 9 159 501 34 382 3.13e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000079.t1 AT3G18670 30.153 587 382 8 129 700 21 594 9.66e-81 269
MS.gene000079.t1 AT3G18670 29.199 637 378 10 129 700 21 649 1.55e-80 270
MS.gene000079.t1 AT5G35810 40.923 325 186 1 387 705 23 347 5.16e-76 248
MS.gene000079.t1 AT5G04700 31.330 549 325 13 190 690 112 656 4.15e-65 228
MS.gene000079.t1 AT5G04690 31.151 504 301 11 228 690 148 646 5.74e-65 228
MS.gene000079.t1 AT5G04690 30.539 501 294 11 228 690 148 632 1.77e-63 223
MS.gene000079.t1 AT5G04690 31.924 473 304 10 228 690 148 612 7.53e-63 221
MS.gene000079.t1 AT5G04680 30.466 558 326 15 190 690 99 651 2.00e-56 204
MS.gene000079.t1 AT5G04680 30.829 519 306 12 223 690 12 528 2.47e-56 201
MS.gene000079.t1 AT5G04730 30.019 533 304 16 228 704 76 595 9.24e-55 198
MS.gene000079.t1 AT5G04680 30.090 555 318 15 190 690 99 637 1.26e-54 199
MS.gene000079.t1 AT5G04680 35.880 301 179 5 402 690 382 680 8.74e-46 174
MS.gene000079.t1 AT3G54065 42.654 211 114 1 487 690 8 218 6.00e-45 161
MS.gene000079.t1 AT5G35830 43.624 149 83 1 159 306 89 237 5.77e-29 117
MS.gene000079.t1 AT5G04700 26.257 358 214 12 190 501 112 465 1.51e-16 83.6

Find 110 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGATCATCTGGATTTA+TGG 0.100523 2.3:-52599338 None:intergenic
GCTGCAGAAGTTGGAAATTT+TGG 0.142363 2.3:+52602436 MS.gene000079:CDS
AATCCACATATTAGCTTTAA+AGG 0.161265 2.3:-52603287 None:intergenic
AGTCAACTTGAATTGGTTTC+TGG 0.187623 2.3:+52602673 MS.gene000079:CDS
TCCAATTGGTTAAATTTCTT+TGG 0.210384 2.3:+52602332 MS.gene000079:CDS
AATCGAATGCCTTTGGATTC+TGG 0.211817 2.3:+52602159 MS.gene000079:CDS
TTTGAATAAAACATCATTCT+TGG 0.233931 2.3:+52603154 MS.gene000079:CDS
ACCCACTGTTACCTGTAAAA+AGG 0.245812 2.3:+52601083 MS.gene000079:CDS
GTGTTTATCCTAGCTTGATA+TGG 0.254743 2.3:+52602479 MS.gene000079:CDS
CCTTTATATGCCCTATTTGA+TGG 0.261228 2.3:-52602576 None:intergenic
TTTACCAGGATTGGTCATTA+TGG 0.270043 2.3:-52602211 None:intergenic
ATTCACAAGCATGCTCTAAA+TGG 0.276178 2.3:+52600815 MS.gene000079:CDS
TTCCATCTGGTCCATCAAAT+AGG 0.287291 2.3:+52602565 MS.gene000079:CDS
GCGGGTGCTTGTGGTGATAC+TGG 0.298679 2.3:-52599552 None:intergenic
TCATTTACTCAACCTACTAT+TGG 0.299582 2.3:+52603474 MS.gene000079:CDS
TCTATTCTTGTCTCGCGTTA+TGG 0.309263 2.3:+52603239 MS.gene000079:CDS
TGTATCTACACTGGCATCTA+TGG 0.319961 2.3:+52601232 MS.gene000079:CDS
AAATGTGCGTCGAGTTACTA+TGG 0.340402 2.3:+52602707 MS.gene000079:CDS
TCCAAAGAAATTTAACCAAT+TGG 0.347460 2.3:-52602333 None:intergenic
GGCTCAAAATCGAATGCCTT+TGG 0.350235 2.3:+52602152 MS.gene000079:CDS
GAAATTCTCTTAAGATCATC+TGG 0.353028 2.3:-52599346 None:intergenic
ACCACGAAGTCAACTTGAAT+TGG 0.364937 2.3:+52602666 MS.gene000079:CDS
CCATCAAATAGGGCATATAA+AGG 0.365171 2.3:+52602576 MS.gene000079:CDS
TTACCAGGATTGGTCATTAT+GGG 0.370620 2.3:-52602210 None:intergenic
TCCATCTGGTCCATCAAATA+GGG 0.399442 2.3:+52602566 MS.gene000079:CDS
ATGGGATTATGATCATGTTC+AGG 0.399531 2.3:-52602192 None:intergenic
AACCTATGTACAAAAGTATT+GGG 0.399981 2.3:-52603427 None:intergenic
AGAGACAGCTTTGCATCTCT+TGG 0.406984 2.3:+52602131 MS.gene000079:CDS
AGCATGCTCTAAATGGAAAC+TGG 0.416905 2.3:+52600822 MS.gene000079:CDS
TGTAGGCCACCCATTTGTTA+TGG 0.417839 2.3:-52600894 None:intergenic
TGTTTATCCTAGCTTGATAT+GGG 0.418566 2.3:+52602480 MS.gene000079:CDS
ATATTTGATGCTGCAGAAGT+TGG 0.423304 2.3:+52602427 MS.gene000079:CDS
ATGCAAGGGTTTACCAGGAT+TGG 0.425283 2.3:-52602220 None:intergenic
CAGTTTGTACCATCGAAGTA+TGG 0.429133 2.3:-52599118 None:intergenic
ATTTAGAGCATGCTTGTGAA+TGG 0.431297 2.3:-52600813 None:intergenic
TTTCTCATCTTTATCTGTGC+AGG 0.431900 2.3:-52602945 None:intergenic
AAACCTATGTACAAAAGTAT+TGG 0.433272 2.3:-52603428 None:intergenic
GAGAATTTCAAGTTGTCAAA+CGG 0.439198 2.3:+52599360 MS.gene000079:CDS
TCTAAGATGCGCTTGGCTGC+TGG 0.440589 2.3:-52600845 None:intergenic
GAAGTATGGTGGCTTTGAAA+TGG 0.449020 2.3:-52599104 None:intergenic
AATCAGTTGACTACAAACTT+TGG 0.451937 2.3:+52599176 MS.gene000079:CDS
CAGAAACACTTTATTGCACT+TGG 0.454500 2.3:+52602630 MS.gene000079:CDS
TGCTACCATCATGCTTGTTA+CGG 0.458985 2.3:-52603327 None:intergenic
GCTGCTGCAACTACTTTACC+AGG 0.466568 2.3:+52603101 MS.gene000079:CDS
TCCTAGCTTGATATGGGATG+TGG 0.473173 2.3:+52602486 MS.gene000079:CDS
TTTAAAGCTAATATGTGGAT+TGG 0.476951 2.3:+52603289 MS.gene000079:CDS
ACCAATTCAAGTTGACTTCG+TGG 0.480782 2.3:-52602667 None:intergenic
CGTCGAGTTACTATGGTTTG+AGG 0.481581 2.3:+52602714 MS.gene000079:CDS
GCATGCTAGTATATTCCATC+TGG 0.484064 2.3:+52602552 MS.gene000079:CDS
TGCAAAGCAGCATACTGAAT+AGG 0.493023 2.3:-52601124 None:intergenic
TTTAGAGCATGCTTGTGAAT+GGG 0.494360 2.3:-52600812 None:intergenic
ATGGACAATACCATCATTGA+AGG 0.496388 2.3:+52599076 MS.gene000079:CDS
AATGGATCTTCCTTCAATGA+TGG 0.496725 2.3:-52599086 None:intergenic
ATGGTACAAACTGTACTGAA+TGG 0.500357 2.3:+52599128 MS.gene000079:CDS
CTCTATGTCTAAGATGCGCT+TGG 0.501048 2.3:-52600852 None:intergenic
CTGCCTTTAAAGCTAATATG+TGG 0.505807 2.3:+52603284 MS.gene000079:CDS
ACACTATTGCATATTGCTGC+AGG 0.507047 2.3:+52600914 MS.gene000079:CDS
ATTTCAACTGTGATTGCTAC+CGG 0.507657 2.3:+52603071 MS.gene000079:CDS
GGAAATTGTTGACTTAATGT+TGG 0.507791 2.3:+52601054 MS.gene000079:CDS
TTGTTGACTTAATGTTGGAT+AGG 0.510612 2.3:+52601059 MS.gene000079:CDS
AGATAGAGTACTCCAATAGT+AGG 0.512344 2.3:-52603486 None:intergenic
AATCCCATAATGACCAATCC+TGG 0.518539 2.3:+52602207 MS.gene000079:CDS
CATCAAATAGGGCATATAAA+GGG 0.524642 2.3:+52602577 MS.gene000079:CDS
TTCAAGTTGTCAAACGGCAA+AGG 0.526647 2.3:+52599366 MS.gene000079:CDS
GTCAAACGGCAAAGGAAATG+TGG 0.527792 2.3:+52599374 MS.gene000079:CDS
AGAGCTGCTGCGGGTGCTTG+TGG 0.528314 2.3:-52599561 None:intergenic
GCCCTATTTGATGGACCAGA+TGG 0.528474 2.3:-52602567 None:intergenic
ACTCCTTCACAAAGTGGATG+TGG 0.531177 2.3:-52600943 None:intergenic
TGGAGTACTCTATCTAAGCC+TGG 0.538215 2.3:+52603494 MS.gene000079:CDS
TGCTGCTGCAGCTGGAAACA+TGG 0.539534 2.3:+52601033 MS.gene000079:CDS
GAGAATATTGAGATGAAACT+AGG 0.541523 2.3:-52603398 None:intergenic
TGAAATTAGCATGCAAGACT+CGG 0.543920 2.3:-52603054 None:intergenic
ATTCAGTATGCTGCTTTGCA+AGG 0.548505 2.3:+52601127 MS.gene000079:CDS
TGTGGTGATACTGGAGGTGT+AGG 0.552573 2.3:-52599543 None:intergenic
GCATCAAATATTAGTTGAGA+AGG 0.553049 2.3:-52602415 None:intergenic
TCAATAACTCCTTCACAAAG+TGG 0.554262 2.3:-52600949 None:intergenic
TTAATGATTTCATTTAACTC+CGG 0.556416 2.3:-52602388 None:intergenic
CCAGAGTCATCAGTACCACC+TGG 0.576963 2.3:-52603119 None:intergenic
TCAAAGCCACCATACTTCGA+TGG 0.580044 2.3:+52599109 MS.gene000079:CDS
TTTACGTACTAGAGAAGTAG+TGG 0.582109 2.3:+52603528 MS.gene000079:CDS
TCCACATCCCATATCAAGCT+AGG 0.582284 2.3:-52602487 None:intergenic
TACACATAGCTGTATTGCAT+CGG 0.583100 2.3:+52602530 MS.gene000079:CDS
TTCTTCGCTTGTATCTACAC+TGG 0.585964 2.3:+52601223 MS.gene000079:CDS
TAAGAGAACACGCAGAGTCG+TGG 0.587702 2.3:+52603018 MS.gene000079:CDS
TGATGAAGATATGAAGAACA+TGG 0.592847 2.3:+52599279 MS.gene000079:CDS
AAAATGCTGCCATAACAAAT+GGG 0.593942 2.3:+52600885 MS.gene000079:CDS
ATACTACCATGGTTCGACAT+TGG 0.601191 2.3:+52603373 MS.gene000079:CDS
TATCTCCGTAACAAGCATGA+TGG 0.602474 2.3:+52603322 MS.gene000079:CDS
GTGTCGTATAGAGCTGCTGC+GGG 0.603208 2.3:-52599570 None:intergenic
CCAGGTGGTACTGATGACTC+TGG 0.607373 2.3:+52603119 MS.gene000079:CDS
TCAAACGGCAAAGGAAATGT+GGG 0.610564 2.3:+52599375 MS.gene000079:CDS
AGTGTCGTATAGAGCTGCTG+CGG 0.631974 2.3:-52599571 None:intergenic
ACAGATAAAGATGAGAAACT+CGG 0.632292 2.3:+52602950 MS.gene000079:CDS
ATCGCATTGCAAGATGTCAA+CGG 0.632830 2.3:+52600992 MS.gene000079:CDS
GCAGCAATATGCAATAGTGT+AGG 0.635326 2.3:-52600911 None:intergenic
AAAACACTACTCATCAAAGC+CGG 0.635811 2.3:+52602369 MS.gene000079:CDS
TTCTTCATAGTATACTACCA+TGG 0.636479 2.3:+52603362 MS.gene000079:CDS
AAGGAAGATGCAAAATGACA+TGG 0.640102 2.3:+52601146 MS.gene000079:CDS
TTTGTACCATCGAAGTATGG+TGG 0.655271 2.3:-52599115 None:intergenic
ATAAAGATGAGAAACTCGGA+AGG 0.662531 2.3:+52602954 MS.gene000079:CDS
AGTTGCAGCAGCAAACACTC+CGG 0.666075 2.3:-52603090 None:intergenic
CAATGACAACCAGAATCCAA+AGG 0.669131 2.3:-52602168 None:intergenic
AAACCACATCCACTTTGTGA+AGG 0.674610 2.3:+52600940 MS.gene000079:CDS
ATGCTGCCATAACAAATGGG+TGG 0.675092 2.3:+52600888 MS.gene000079:CDS
AGACAAGAAAATCAATATCG+CGG 0.681208 2.3:-52603219 None:intergenic
CTATGTACAAAAGTATTGGG+AGG 0.681529 2.3:-52603424 None:intergenic
TAGGAACCAATGTCGAACCA+TGG 0.693129 2.3:-52603379 None:intergenic
GGTGCTTGTGGTGATACTGG+AGG 0.737175 2.3:-52599549 None:intergenic
GCTGCAACTACTTTACCAGG+TGG 0.760899 2.3:+52603104 MS.gene000079:CDS
GCTTGTGAATGGGAACACAA+AGG 0.763909 2.3:-52600802 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAAATTTAATGCA+AGG - chr2.3:52602238-52602257 None:intergenic 10.0%
!! AAATATAAAATTTAATGCAA+GGG - chr2.3:52602237-52602256 None:intergenic 10.0%
!! ATTAAAAATATTAATATACG+AGG + chr2.3:52600244-52600263 MS.gene000079:intron 10.0%
!! ATTCCAAAAAATTTAATAAA+TGG + chr2.3:52599223-52599242 MS.gene000079:CDS 10.0%
!! TATATAAATAAAACTCTTAA+TGG + chr2.3:52602814-52602833 MS.gene000079:intron 10.0%
!! TCAATAAAATGAATAAAAAA+GGG - chr2.3:52602754-52602773 None:intergenic 10.0%
!!! AAATTGTCTTTTTTTTTTTT+TGG + chr2.3:52600099-52600118 MS.gene000079:intron 10.0%
!!! ATTAAATTTTTTGGAATTTT+TGG - chr2.3:52599220-52599239 None:intergenic 10.0%
!!! TTGTATTTTATTTAATTTTG+TGG + chr2.3:52600036-52600055 MS.gene000079:intron 10.0%
!!! TTTTTTAAATTCTTTTACAT+TGG + chr2.3:52602254-52602273 MS.gene000079:intron 10.0%
!! AAATTAATAGTAATCACATT+AGG + chr2.3:52599904-52599923 MS.gene000079:intron 15.0%
!! CTCAATAAAATGAATAAAAA+AGG - chr2.3:52602755-52602774 None:intergenic 15.0%
!!! AAATATATATTTTCTTTGAC+AGG + chr2.3:52599496-52599515 MS.gene000079:intron 15.0%
!!! AATATATATTTTCTTTGACA+GGG + chr2.3:52599497-52599516 MS.gene000079:intron 15.0%
!!! AGGCAAATAATTTTTTTTTA+AGG + chr2.3:52601669-52601688 MS.gene000079:intron 15.0%
!!! CTTTTTTATTCATTTTATTG+AGG + chr2.3:52602753-52602772 MS.gene000079:intron 15.0%
!!! TAAGAGTTTTATTTATATAG+TGG - chr2.3:52602813-52602832 None:intergenic 15.0%
!!! TAATTATATTAAAAGTGCAA+TGG - chr2.3:52600073-52600092 None:intergenic 15.0%
!!! TGACCATTTATTAAATTTTT+TGG - chr2.3:52599229-52599248 None:intergenic 15.0%
!! AATTGTTGAAATCTTAATAG+TGG - chr2.3:52601462-52601481 None:intergenic 20.0%
!! ACTGGCTAAATAAAAAAAAT+TGG + chr2.3:52600512-52600531 MS.gene000079:intron 20.0%
!! AGAACATCCAAAAATATATA+CGG + chr2.3:52599875-52599894 MS.gene000079:intron 20.0%
!! ATTAATATTTGTTTGCGTTA+GGG - chr2.3:52601811-52601830 None:intergenic 20.0%
!! CATATATAAATAGATGTGTT+CGG - chr2.3:52600707-52600726 None:intergenic 20.0%
!! CTAATATAAGTTGTGTATTA+AGG - chr2.3:52601835-52601854 None:intergenic 20.0%
!! GGAATTAATAACATTTGAAA+TGG + chr2.3:52600571-52600590 MS.gene000079:intron 20.0%
!! TTAATGATTTCATTTAACTC+CGG - chr2.3:52602391-52602410 None:intergenic 20.0%
!! TTTGAATAAAACATCATTCT+TGG + chr2.3:52603154-52603173 MS.gene000079:CDS 20.0%
!!! AACTTATATTAGTTTCCTAT+TGG + chr2.3:52601843-52601862 MS.gene000079:intron 20.0%
!!! AATTTTTTTTATTTAGCCAG+TGG - chr2.3:52600513-52600532 None:intergenic 20.0%
!!! GTTTTATTTATATAGTGGAA+TGG - chr2.3:52602808-52602827 None:intergenic 20.0%
! AAATACAATTTAACAACGCT+TGG - chr2.3:52600197-52600216 None:intergenic 25.0%
! AATACAAAATCAAGTACGAA+TGG - chr2.3:52600023-52600042 None:intergenic 25.0%
! AATTGTCTTCACAAATGAAA+CGG + chr2.3:52601613-52601632 MS.gene000079:intron 25.0%
! AGAAGAATAGATGAAATTTG+TGG + chr2.3:52600669-52600688 MS.gene000079:intron 25.0%
! ATTTCCCAATATTATGTTAC+CGG + chr2.3:52599713-52599732 MS.gene000079:intron 25.0%
! CAAATTCATTATAGCTGAAA+CGG - chr2.3:52601897-52601916 None:intergenic 25.0%
! CAAGAAAATATGTACTATGT+TGG + chr2.3:52599955-52599974 MS.gene000079:intron 25.0%
! CATTAATATTTGTTTGCGTT+AGG - chr2.3:52601812-52601831 None:intergenic 25.0%
! GTCTCTAAACTTCTATTTAA+AGG + chr2.3:52601919-52601938 MS.gene000079:intron 25.0%
! TATTAAAACTTGCACTTGAA+AGG - chr2.3:52601591-52601610 None:intergenic 25.0%
! TCCAAAGAAATTTAACCAAT+TGG - chr2.3:52602336-52602355 None:intergenic 25.0%
! TCCAATTGGTTAAATTTCTT+TGG + chr2.3:52602332-52602351 MS.gene000079:CDS 25.0%
! TCTAAACTTCTATTTAAAGG+TGG + chr2.3:52601922-52601941 MS.gene000079:intron 25.0%
! TTAATATTTGTTTGCGTTAG+GGG - chr2.3:52601810-52601829 None:intergenic 25.0%
! TTTCAGCTATAATGAATTTG+AGG + chr2.3:52601897-52601916 MS.gene000079:intron 25.0%
!! AAACCTATGTACAAAAGTAT+TGG - chr2.3:52603431-52603450 None:intergenic 25.0%
!! AAACTATTAGTCTCTAATGT+TGG - chr2.3:52601328-52601347 None:intergenic 25.0%
!! ACAAATTAATTTGAGAGAGA+GGG - chr2.3:52599635-52599654 None:intergenic 25.0%
!! ATTAATAGGCTTTGTAGATT+TGG - chr2.3:52599747-52599766 None:intergenic 25.0%
!! TACAAATTAATTTGAGAGAG+AGG - chr2.3:52599636-52599655 None:intergenic 25.0%
!! TCTGGTTTCTATTCATTAAT+AGG - chr2.3:52599761-52599780 None:intergenic 25.0%
!! TTTAAAGCTAATATGTGGAT+TGG + chr2.3:52603289-52603308 MS.gene000079:CDS 25.0%
!!! AACCTATGTACAAAAGTATT+GGG - chr2.3:52603430-52603449 None:intergenic 25.0%
!!! AAGGTGTTGTGTATTTTATA+TGG - chr2.3:52600483-52600502 None:intergenic 25.0%
!!! AATCCACATATTAGCTTTAA+AGG - chr2.3:52603290-52603309 None:intergenic 25.0%
!!! AGAATTTTGAGTAGTTCATA+TGG + chr2.3:52601508-52601527 MS.gene000079:intron 25.0%
!!! GATGTTTTATTCAAATAGTG+TGG - chr2.3:52603149-52603168 None:intergenic 25.0%
!!! GTGAATTGAACTTTTGTTTT+AGG + chr2.3:52600752-52600771 MS.gene000079:intron 25.0%
AAAAATGCTGCCATAACAAA+TGG + chr2.3:52600884-52600903 MS.gene000079:CDS 30.0%
AAAATGCTGCCATAACAAAT+GGG + chr2.3:52600885-52600904 MS.gene000079:CDS 30.0%
AAAATTCTATAGTTAGAGCC+CGG - chr2.3:52601496-52601515 None:intergenic 30.0%
AACAAAGACATTATCAGAGT+TGG - chr2.3:52600551-52600570 None:intergenic 30.0%
AACAATTTGATCACTAAACC+GGG + chr2.3:52601475-52601494 MS.gene000079:intron 30.0%
AATCACATTAGGACAGAAAT+GGG + chr2.3:52599915-52599934 MS.gene000079:intron 30.0%
AATCAGTTGACTACAAACTT+TGG + chr2.3:52599176-52599195 MS.gene000079:CDS 30.0%
ACAGATAAAGATGAGAAACT+CGG + chr2.3:52602950-52602969 MS.gene000079:CDS 30.0%
AGACAAGAAAATCAATATCG+CGG - chr2.3:52603222-52603241 None:intergenic 30.0%
AGTAGTTCATATGGTCTATT+CGG + chr2.3:52601517-52601536 MS.gene000079:intron 30.0%
CAACAATTTGATCACTAAAC+CGG + chr2.3:52601474-52601493 MS.gene000079:intron 30.0%
CATCAAATAGGGCATATAAA+GGG + chr2.3:52602577-52602596 MS.gene000079:CDS 30.0%
CCTTAAAAATGGTAAGAGAT+AGG + chr2.3:52602076-52602095 MS.gene000079:CDS 30.0%
CTTAAGATCATCTGGATTTA+TGG - chr2.3:52599341-52599360 None:intergenic 30.0%
GAAATTCTCTTAAGATCATC+TGG - chr2.3:52599349-52599368 None:intergenic 30.0%
GAGAATATTGAGATGAAACT+AGG - chr2.3:52603401-52603420 None:intergenic 30.0%
GCATCAAATATTAGTTGAGA+AGG - chr2.3:52602418-52602437 None:intergenic 30.0%
TAATATTTGTTTGCGTTAGG+GGG - chr2.3:52601809-52601828 None:intergenic 30.0%
TAATCACATTAGGACAGAAA+TGG + chr2.3:52599914-52599933 MS.gene000079:intron 30.0%
TAGATGAAATTTGTGGATGA+TGG + chr2.3:52600676-52600695 MS.gene000079:intron 30.0%
TATATGCTGGAACTTAACTT+TGG + chr2.3:52600600-52600619 MS.gene000079:intron 30.0%
TCATTTACTCAACCTACTAT+TGG + chr2.3:52603474-52603493 MS.gene000079:CDS 30.0%
TGATGAAGATATGAAGAACA+TGG + chr2.3:52599279-52599298 MS.gene000079:CDS 30.0%
TGTTCAAGCAGAATAGATTA+TGG - chr2.3:52600368-52600387 None:intergenic 30.0%
TGTTTATCCTAGCTTGATAT+GGG + chr2.3:52602480-52602499 MS.gene000079:CDS 30.0%
TTCTTCATAGTATACTACCA+TGG + chr2.3:52603362-52603381 MS.gene000079:CDS 30.0%
TTTCTAACTAGTCCCTAAAT+CGG - chr2.3:52601421-52601440 None:intergenic 30.0%
! AACTCTGATAATGTCTTTGT+TGG + chr2.3:52600550-52600569 MS.gene000079:intron 30.0%
! ATCTTAATAGTGGTCGATTT+AGG - chr2.3:52601452-52601471 None:intergenic 30.0%
! GAAATCAATTTTGCAGAACA+TGG - chr2.3:52599698-52599717 None:intergenic 30.0%
! TCCTCTAAAAACTCAAGATT+AGG - chr2.3:52599597-52599616 None:intergenic 30.0%
! TCTTAATAGTGGTCGATTTA+GGG - chr2.3:52601451-52601470 None:intergenic 30.0%
! TTATATTGCTATTGAGACAG+TGG - chr2.3:52602852-52602871 None:intergenic 30.0%
! TTTTTGCAAATGAGAAGTTC+TGG - chr2.3:52602019-52602038 None:intergenic 30.0%
!! AAATCACGTTGTTTTCCAAT+TGG + chr2.3:52602318-52602337 MS.gene000079:CDS 30.0%
!! ACGTAAATCATATTTTTGCC+AGG - chr2.3:52603515-52603534 None:intergenic 30.0%
!! CCTATCTCTTACCATTTTTA+AGG - chr2.3:52602079-52602098 None:intergenic 30.0%
!! CTTTGGCTTGTGATTAAAAA+TGG + chr2.3:52599193-52599212 MS.gene000079:CDS 30.0%
!! GAGAATTTCAAGTTGTCAAA+CGG + chr2.3:52599360-52599379 MS.gene000079:CDS 30.0%
!! GGAAATTGTTGACTTAATGT+TGG + chr2.3:52601054-52601073 MS.gene000079:CDS 30.0%
!! TCCTAATCTTGAGTTTTTAG+AGG + chr2.3:52599593-52599612 MS.gene000079:CDS 30.0%
!! TTGTTGACTTAATGTTGGAT+AGG + chr2.3:52601059-52601078 MS.gene000079:CDS 30.0%
!!! AATACATCGTTTTGAAGATG+AGG + chr2.3:52601186-52601205 MS.gene000079:CDS 30.0%
!!! CATTTTTTGTGAAAATGACC+CGG - chr2.3:52599985-52600004 None:intergenic 30.0%
AAAACACTACTCATCAAAGC+CGG + chr2.3:52602369-52602388 MS.gene000079:CDS 35.0%
AAACGCAGACAAAAGAGTAA+AGG - chr2.3:52601731-52601750 None:intergenic 35.0%
AAAGACATTATCAGAGTTGG+AGG - chr2.3:52600548-52600567 None:intergenic 35.0%
AACGCAGACAAAAGAGTAAA+GGG - chr2.3:52601730-52601749 None:intergenic 35.0%
AAGGAAGATGCAAAATGACA+TGG + chr2.3:52601146-52601165 MS.gene000079:CDS 35.0%
AATATTATGTTACCGGACAC+CGG + chr2.3:52599720-52599739 MS.gene000079:intron 35.0%
AATGGATCTTCCTTCAATGA+TGG - chr2.3:52599089-52599108 None:intergenic 35.0%
ACAAAATCAAGTACGAATGG+TGG - chr2.3:52600020-52600039 None:intergenic 35.0%
ATAAAGATGAGAAACTCGGA+AGG + chr2.3:52602954-52602973 MS.gene000079:CDS 35.0%
ATATTTGATGCTGCAGAAGT+TGG + chr2.3:52602427-52602446 MS.gene000079:CDS 35.0%
ATCAAGAAGCTTAAGATGCA+AGG + chr2.3:52600453-52600472 MS.gene000079:intron 35.0%
ATGATTCAGTTAGAAGAAGG+TGG - chr2.3:52600412-52600431 None:intergenic 35.0%
ATGGACAATACCATCATTGA+AGG + chr2.3:52599076-52599095 MS.gene000079:CDS 35.0%
ATGGGATTATGATCATGTTC+AGG - chr2.3:52602195-52602214 None:intergenic 35.0%
ATGGTACAAACTGTACTGAA+TGG + chr2.3:52599128-52599147 MS.gene000079:CDS 35.0%
ATTTAATGCAAGGGTTTACC+AGG - chr2.3:52602228-52602247 None:intergenic 35.0%
CAAAATCAAGTACGAATGGT+GGG - chr2.3:52600019-52600038 None:intergenic 35.0%
CAGAAACACTTTATTGCACT+TGG + chr2.3:52602630-52602649 MS.gene000079:CDS 35.0%
CCATCAAATAGGGCATATAA+AGG + chr2.3:52602576-52602595 MS.gene000079:CDS 35.0%
CCTTTATATGCCCTATTTGA+TGG - chr2.3:52602579-52602598 None:intergenic 35.0%
GAAATATCCCATGTTGTCTA+TGG - chr2.3:52601997-52602016 None:intergenic 35.0%
GAAATGGCTTCTTTATATGC+TGG + chr2.3:52600587-52600606 MS.gene000079:intron 35.0%
GACATGATTCAGTTAGAAGA+AGG - chr2.3:52600415-52600434 None:intergenic 35.0%
GGTGACAATGCTTAAGAAAA+AGG + chr2.3:52601538-52601557 MS.gene000079:intron 35.0%
GTAACCATATTTCGTATTGC+AGG + chr2.3:52602289-52602308 MS.gene000079:intron 35.0%
GTGTCCGGTAACATAATATT+GGG - chr2.3:52599720-52599739 None:intergenic 35.0%
GTGTTTATCCTAGCTTGATA+TGG + chr2.3:52602479-52602498 MS.gene000079:CDS 35.0%
TACACATAGCTGTATTGCAT+CGG + chr2.3:52602530-52602549 MS.gene000079:CDS 35.0%
TCAAGAAGCTTAAGATGCAA+GGG + chr2.3:52600454-52600473 MS.gene000079:intron 35.0%
TCAATAACTCCTTCACAAAG+TGG - chr2.3:52600952-52600971 None:intergenic 35.0%
TGAGCTAAATGTTAAGGAGT+TGG - chr2.3:52601767-52601786 None:intergenic 35.0%
TGATTCAGTTAGAAGAAGGT+GGG - chr2.3:52600411-52600430 None:intergenic 35.0%
TTTCTCATCTTTATCTGTGC+AGG - chr2.3:52602948-52602967 None:intergenic 35.0%
! ACTAATTGAGAGACCGATTT+AGG + chr2.3:52601405-52601424 MS.gene000079:intron 35.0%
! AGATAGAGTACTCCAATAGT+AGG - chr2.3:52603489-52603508 None:intergenic 35.0%
! AGTCAACTTGAATTGGTTTC+TGG + chr2.3:52602673-52602692 MS.gene000079:CDS 35.0%
! ATCAATTTTGCAGAACATGG+TGG - chr2.3:52599695-52599714 None:intergenic 35.0%
! ATTCACAAGCATGCTCTAAA+TGG + chr2.3:52600815-52600834 MS.gene000079:CDS 35.0%
! ATTTAGAGCATGCTTGTGAA+TGG - chr2.3:52600816-52600835 None:intergenic 35.0%
! CTAATTGAGAGACCGATTTA+GGG + chr2.3:52601406-52601425 MS.gene000079:intron 35.0%
! CTCCCAATACTTTTGTACAT+AGG + chr2.3:52603425-52603444 MS.gene000079:CDS 35.0%
! CTGGTTTGAGCTAAATGTTA+AGG - chr2.3:52601773-52601792 None:intergenic 35.0%
! TATAGTGGAATGGATAAGTG+TGG - chr2.3:52602798-52602817 None:intergenic 35.0%
! TATGAGCGATTTTCCATCAT+CGG + chr2.3:52601967-52601986 MS.gene000079:intron 35.0%
! TGAGACGCCGTATATATTTT+TGG - chr2.3:52599885-52599904 None:intergenic 35.0%
! TTTAAGGCTAAGTCTGCAAT+TGG - chr2.3:52602063-52602082 None:intergenic 35.0%
! TTTAGAGCATGCTTGTGAAT+GGG - chr2.3:52600815-52600834 None:intergenic 35.0%
!! CTATGTACAAAAGTATTGGG+AGG - chr2.3:52603427-52603446 None:intergenic 35.0%
!! CTGCCTTTAAAGCTAATATG+TGG + chr2.3:52603284-52603303 MS.gene000079:CDS 35.0%
!! CTTGAGTTTTTAGAGGAAAC+AGG + chr2.3:52599600-52599619 MS.gene000079:CDS 35.0%
!! GTTTTTAGAGGAAACAGGTA+TGG + chr2.3:52599605-52599624 MS.gene000079:intron 35.0%
!! TGCAGACTTAGCCTTAAAAA+TGG + chr2.3:52602065-52602084 MS.gene000079:intron 35.0%
!! TTACCAGGATTGGTCATTAT+GGG - chr2.3:52602213-52602232 None:intergenic 35.0%
!! TTTACCAGGATTGGTCATTA+TGG - chr2.3:52602214-52602233 None:intergenic 35.0%
!!! CTTGTTTTTTAACCCTTCTC+CGG - chr2.3:52601651-52601670 None:intergenic 35.0%
!!! GTAGTGTTTTTCAAGAATCG+TGG - chr2.3:52602359-52602378 None:intergenic 35.0%
!!! TTTTTTTTTGGCTTTCGCAC+CGG + chr2.3:52600111-52600130 MS.gene000079:intron 35.0%
AAACCACATCCACTTTGTGA+AGG + chr2.3:52600940-52600959 MS.gene000079:CDS 40.0%
AAATGTGCGTCGAGTTACTA+TGG + chr2.3:52602707-52602726 MS.gene000079:CDS 40.0%
AATCCCATAATGACCAATCC+TGG + chr2.3:52602207-52602226 MS.gene000079:CDS 40.0%
AATCGAATGCCTTTGGATTC+TGG + chr2.3:52602159-52602178 MS.gene000079:CDS 40.0%
ACACTATTGCATATTGCTGC+AGG + chr2.3:52600914-52600933 MS.gene000079:CDS 40.0%
ACCACGAAGTCAACTTGAAT+TGG + chr2.3:52602666-52602685 MS.gene000079:CDS 40.0%
ACCCACTGTTACCTGTAAAA+AGG + chr2.3:52601083-52601102 MS.gene000079:CDS 40.0%
AGCTGAAACGGTGATCAAAT+CGG - chr2.3:52601885-52601904 None:intergenic 40.0%
ATACTACCATGGTTCGACAT+TGG + chr2.3:52603373-52603392 MS.gene000079:CDS 40.0%
ATATCCCATGTTGTCTATGG+TGG - chr2.3:52601994-52602013 None:intergenic 40.0%
ATCGCATTGCAAGATGTCAA+CGG + chr2.3:52600992-52601011 MS.gene000079:CDS 40.0%
CAATGACAACCAGAATCCAA+AGG - chr2.3:52602171-52602190 None:intergenic 40.0%
CAGTTTGTACCATCGAAGTA+TGG - chr2.3:52599121-52599140 None:intergenic 40.0%
CATGCCTGCAATACGAAATA+TGG - chr2.3:52602296-52602315 None:intergenic 40.0%
CCACTGTTACCTGTAAAAAG+GGG + chr2.3:52601085-52601104 MS.gene000079:CDS 40.0%
CCCACTGTTACCTGTAAAAA+GGG + chr2.3:52601084-52601103 MS.gene000079:CDS 40.0%
CGGAGAAGGGTTAAAAAACA+AGG + chr2.3:52601649-52601668 MS.gene000079:intron 40.0%
GAGACATAGAAGAACTCTTC+TGG - chr2.3:52599779-52599798 None:intergenic 40.0%
GCAGCAATATGCAATAGTGT+AGG - chr2.3:52600914-52600933 None:intergenic 40.0%
GCATGCTAGTATATTCCATC+TGG + chr2.3:52602552-52602571 MS.gene000079:CDS 40.0%
GCTAAATGTTAAGGAGTTGG+AGG - chr2.3:52601764-52601783 None:intergenic 40.0%
GGTGTCCGGTAACATAATAT+TGG - chr2.3:52599721-52599740 None:intergenic 40.0%
GTTGATTGGACAAAGCCAAT+AGG - chr2.3:52601861-52601880 None:intergenic 40.0%
TATCTCCGTAACAAGCATGA+TGG + chr2.3:52603322-52603341 MS.gene000079:CDS 40.0%
TCAAACGGCAAAGGAAATGT+GGG + chr2.3:52599375-52599394 MS.gene000079:CDS 40.0%
TCCATCTGGTCCATCAAATA+GGG + chr2.3:52602566-52602585 MS.gene000079:CDS 40.0%
TCTATTCTTGTCTCGCGTTA+TGG + chr2.3:52603239-52603258 MS.gene000079:CDS 40.0%
TGCAAAGCAGCATACTGAAT+AGG - chr2.3:52601127-52601146 None:intergenic 40.0%
TGTATCTACACTGGCATCTA+TGG + chr2.3:52601232-52601251 MS.gene000079:CDS 40.0%
TTCCATCTGGTCCATCAAAT+AGG + chr2.3:52602565-52602584 MS.gene000079:CDS 40.0%
TTCTTCGCTTGTATCTACAC+TGG + chr2.3:52601223-52601242 MS.gene000079:CDS 40.0%
TTTGTACCATCGAAGTATGG+TGG - chr2.3:52599118-52599137 None:intergenic 40.0%
! AGCATGCTCTAAATGGAAAC+TGG + chr2.3:52600822-52600841 MS.gene000079:CDS 40.0%
! CCCTTTTTACAGGTAACAGT+GGG - chr2.3:52601087-52601106 None:intergenic 40.0%
! GCTGCAGAAGTTGGAAATTT+TGG + chr2.3:52602436-52602455 MS.gene000079:CDS 40.0%
! TAGGCTTTGTAGATTTGGAC+CGG - chr2.3:52599742-52599761 None:intergenic 40.0%
! TGCTACCATCATGCTTGTTA+CGG - chr2.3:52603330-52603349 None:intergenic 40.0%
!! ACCAATTCAAGTTGACTTCG+TGG - chr2.3:52602670-52602689 None:intergenic 40.0%
!! ATTCAGTATGCTGCTTTGCA+AGG + chr2.3:52601127-52601146 MS.gene000079:CDS 40.0%
!! GAAGTATGGTGGCTTTGAAA+TGG - chr2.3:52599107-52599126 None:intergenic 40.0%
!! GTGATCAAATCGGTGTTGAT+TGG - chr2.3:52601875-52601894 None:intergenic 40.0%
!! TATGTACTATGTTGGCTCAC+CGG + chr2.3:52599963-52599982 MS.gene000079:intron 40.0%
!! TTCAAGTTGTCAAACGGCAA+AGG + chr2.3:52599366-52599385 MS.gene000079:CDS 40.0%
!!! ATCGTTTTGAAGATGAGGAC+TGG + chr2.3:52601191-52601210 MS.gene000079:CDS 40.0%
!!! TCGTTTTGAAGATGAGGACT+GGG + chr2.3:52601192-52601211 MS.gene000079:CDS 40.0%
ACCTGTAAAAAGGGGTGGAA+AGG + chr2.3:52601093-52601112 MS.gene000079:CDS 45.0%
ACTCCTTCACAAAGTGGATG+TGG - chr2.3:52600946-52600965 None:intergenic 45.0%
AGAGACAGCTTTGCATCTCT+TGG + chr2.3:52602131-52602150 MS.gene000079:CDS 45.0%
ATGCAAGGGTTTACCAGGAT+TGG - chr2.3:52602223-52602242 None:intergenic 45.0%
ATGCTGCCATAACAAATGGG+TGG + chr2.3:52600888-52600907 MS.gene000079:CDS 45.0%
ATTAGTCGTCCACCTTTGGT+GGG - chr2.3:52600144-52600163 None:intergenic 45.0%
CAGTTAGAAGAAGGTGGGAA+AGG - chr2.3:52600406-52600425 None:intergenic 45.0%
CCTGTAAAAAGGGGTGGAAA+GGG + chr2.3:52601094-52601113 MS.gene000079:CDS 45.0%
CGTCGAGTTACTATGGTTTG+AGG + chr2.3:52602714-52602733 MS.gene000079:CDS 45.0%
CTGTTACCTGTAAAAAGGGG+TGG + chr2.3:52601088-52601107 MS.gene000079:CDS 45.0%
GCGTACTAGAGTAGACATGA+AGG + chr2.3:52600624-52600643 MS.gene000079:intron 45.0%
GCTTGAACAATCAGCCACAT+CGG + chr2.3:52600379-52600398 MS.gene000079:intron 45.0%
GCTTGTGAATGGGAACACAA+AGG - chr2.3:52600805-52600824 None:intergenic 45.0%
GGCTCAAAATCGAATGCCTT+TGG + chr2.3:52602152-52602171 MS.gene000079:CDS 45.0%
GTCAAACGGCAAAGGAAATG+TGG + chr2.3:52599374-52599393 MS.gene000079:CDS 45.0%
TAACCCTTCTCCGGTCAATT+GGG - chr2.3:52601642-52601661 None:intergenic 45.0%
TAGGAACCAATGTCGAACCA+TGG - chr2.3:52603382-52603401 None:intergenic 45.0%
TCAAAGCCACCATACTTCGA+TGG + chr2.3:52599109-52599128 MS.gene000079:CDS 45.0%
TCCACATCCCATATCAAGCT+AGG - chr2.3:52602490-52602509 None:intergenic 45.0%
TCCTAGCTTGATATGGGATG+TGG + chr2.3:52602486-52602505 MS.gene000079:CDS 45.0%
TGCAGCAGCAAAGCAAAAAG+CGG - chr2.3:52601023-52601042 None:intergenic 45.0%
TTAACCCTTCTCCGGTCAAT+TGG - chr2.3:52601643-52601662 None:intergenic 45.0%
TTTGTTTGCGTTAGGGGGTT+TGG - chr2.3:52601804-52601823 None:intergenic 45.0%
! CCCCTTTTTACAGGTAACAG+TGG - chr2.3:52601088-52601107 None:intergenic 45.0%
! CTCTATGTCTAAGATGCGCT+TGG - chr2.3:52600855-52600874 None:intergenic 45.0%
! TGGAGTACTCTATCTAAGCC+TGG + chr2.3:52603494-52603513 MS.gene000079:CDS 45.0%
! TGTAGGCCACCCATTTGTTA+TGG - chr2.3:52600897-52600916 None:intergenic 45.0%
!! ATGTACTATGTTGGCTCACC+GGG + chr2.3:52599964-52599983 MS.gene000079:intron 45.0%
ACATGCCTCTATGCATGAGC+CGG - chr2.3:52600167-52600186 None:intergenic 50.0%
AGTGTCGTATAGAGCTGCTG+CGG - chr2.3:52599574-52599593 None:intergenic 50.0%
AGTTGCAGCAGCAAACACTC+CGG - chr2.3:52603093-52603112 None:intergenic 50.0%
CCAAAGGTGGACGACTAATC+CGG + chr2.3:52600145-52600164 MS.gene000079:intron 50.0%
CGGTCCACCATAGACAACAT+GGG + chr2.3:52601987-52602006 MS.gene000079:intron 50.0%
CTAATCCGGCTCATGCATAG+AGG + chr2.3:52600159-52600178 MS.gene000079:intron 50.0%
GAAACGGTAGCCCAATTGAC+CGG + chr2.3:52601629-52601648 MS.gene000079:intron 50.0%
GCTGCAACTACTTTACCAGG+TGG + chr2.3:52603104-52603123 MS.gene000079:CDS 50.0%
GCTGCTGCAACTACTTTACC+AGG + chr2.3:52603101-52603120 MS.gene000079:CDS 50.0%
TAAGAGAACACGCAGAGTCG+TGG + chr2.3:52603018-52603037 MS.gene000079:CDS 50.0%
TAGCCCAATTGACCGGAGAA+GGG + chr2.3:52601636-52601655 MS.gene000079:intron 50.0%
TCGGTCCACCATAGACAACA+TGG + chr2.3:52601986-52602005 MS.gene000079:intron 50.0%
TGTAGATTTGGACCGGTGTC+CGG - chr2.3:52599735-52599754 None:intergenic 50.0%
TTTAGCCAGTGGCACTCGAA+AGG - chr2.3:52600502-52600521 None:intergenic 50.0%
! ATGCATAGAGGCATGTGCAC+TGG + chr2.3:52600171-52600190 MS.gene000079:intron 50.0%
! CCCTTTCCACCCCTTTTTAC+AGG - chr2.3:52601097-52601116 None:intergenic 50.0%
! GATTAGTCGTCCACCTTTGG+TGG - chr2.3:52600145-52600164 None:intergenic 50.0%
! GCCCTATTTGATGGACCAGA+TGG - chr2.3:52602570-52602589 None:intergenic 50.0%
! TGTGGTGATACTGGAGGTGT+AGG - chr2.3:52599546-52599565 None:intergenic 50.0%
! TTTTGCTTTGCTGCTGCAGC+TGG + chr2.3:52601025-52601044 MS.gene000079:CDS 50.0%
!! TGTCTATGGTGGACCGATGA+TGG - chr2.3:52601983-52602002 None:intergenic 50.0%
AAGGTGGGAAAGGACCGATG+TGG - chr2.3:52600396-52600415 None:intergenic 55.0%
CCAGAGTCATCAGTACCACC+TGG - chr2.3:52603122-52603141 None:intergenic 55.0%
GGTGCTTGTGGTGATACTGG+AGG - chr2.3:52599552-52599571 None:intergenic 55.0%
GTAGCCCAATTGACCGGAGA+AGG + chr2.3:52601635-52601654 MS.gene000079:intron 55.0%
GTGTCGTATAGAGCTGCTGC+GGG - chr2.3:52599573-52599592 None:intergenic 55.0%
TGCTGCTGCAGCTGGAAACA+TGG + chr2.3:52601033-52601052 MS.gene000079:CDS 55.0%
! ACCTTTGGTGGGTCGGAAAC+CGG - chr2.3:52600133-52600152 None:intergenic 55.0%
! AGGGGGTTTGGTAGCTCAAC+TGG - chr2.3:52601792-52601811 None:intergenic 55.0%
! CAACACCTTTCGAGTGCCAC+TGG + chr2.3:52600494-52600513 MS.gene000079:intron 55.0%
! TCTAAGATGCGCTTGGCTGC+TGG - chr2.3:52600848-52600867 None:intergenic 55.0%
!! CCAGGTGGTACTGATGACTC+TGG + chr2.3:52603119-52603138 MS.gene000079:CDS 55.0%
!! CCGGATTAGTCGTCCACCTT+TGG - chr2.3:52600148-52600167 None:intergenic 55.0%
GCGGGTGCTTGTGGTGATAC+TGG - chr2.3:52599555-52599574 None:intergenic 60.0%
GGTTTCCGACCCACCAAAGG+TGG + chr2.3:52600132-52600151 MS.gene000079:intron 60.0%
! ACCGGTTTCCGACCCACCAA+AGG + chr2.3:52600129-52600148 MS.gene000079:intron 60.0%
! GTCGTCCACCTTTGGTGGGT+CGG - chr2.3:52600140-52600159 None:intergenic 60.0%
AGAGCTGCTGCGGGTGCTTG+TGG - chr2.3:52599564-52599583 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 52599076 52603547 52599076 ID=MS.gene000079
chr2.3 mRNA 52599076 52603547 52599076 ID=MS.gene000079.t1;Parent=MS.gene000079
chr2.3 exon 52599076 52599410 52599076 ID=MS.gene000079.t1.exon1;Parent=MS.gene000079.t1
chr2.3 CDS 52599076 52599410 52599076 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
chr2.3 exon 52599518 52599621 52599518 ID=MS.gene000079.t1.exon2;Parent=MS.gene000079.t1
chr2.3 CDS 52599518 52599621 52599518 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
chr2.3 exon 52600774 52601253 52600774 ID=MS.gene000079.t1.exon3;Parent=MS.gene000079.t1
chr2.3 CDS 52600774 52601253 52600774 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
chr2.3 exon 52602070 52602228 52602070 ID=MS.gene000079.t1.exon4;Parent=MS.gene000079.t1
chr2.3 CDS 52602070 52602228 52602070 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
chr2.3 exon 52602311 52602735 52602311 ID=MS.gene000079.t1.exon5;Parent=MS.gene000079.t1
chr2.3 CDS 52602311 52602735 52602311 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
chr2.3 exon 52602924 52603547 52602924 ID=MS.gene000079.t1.exon6;Parent=MS.gene000079.t1
chr2.3 CDS 52602924 52603547 52602924 ID=cds.MS.gene000079.t1;Parent=MS.gene000079.t1
Gene Sequence

>MS.gene000079

ATGGACAATACCATCATTGAAGGAAGATCCATTTCAAAGCCACCATACTTCGATGGTACAAACTGTACTGAATGGAAAGAGCGTACAAAGATATTTATACAATCAGTTGACTACAAACTTTGGCTTGTGATTAAAAATGGACCAAAAATTCCAAAAAATTTAATAAATGGTCAAGAAGAGTTGAAATCTGAAGATGAATTCAATGATGAAGATATGAAGAACATGGAACAAGAAGCAAAAGCAAAATATATATTATGTTGTGCCATAAATCCAGATGATCTTAAGAGAATTTCAAGTTGTCAAACGGCAAAGGAAATGTGGGATGAGCTTGACAAGTTAAGTATTTTCATACATTCAATTTTGTTCAAAAAACTGATTTATGTTTTCTTAGTTGAAATATTTTATTGATTAAAAATTGCAAAATATATATTTTCTTTGACAGGGAAGTGACAACATCTAATGTGAATCCTACACCTCCAGTATCACCACAAGCACCCGCAGCAGCTCTATACGACACTCCTAATCTTGAGTTTTTAGAGGAAACAGGTATGGTTCTCCCTCTCTCTCAAATTAATTTGTACTTATGCAAAATTAGCATATCTGCATTTCTCTTCTTCCACCATGTTCTGCAAAATTGATTTCCCAATATTATGTTACCGGACACCGGTCCAAATCTACAAAGCCTATTAATGAATAGAAACCAGAAGAGTTCTTCTATGTCTCTTTTTTAACAAATCAACTAAGTTTATTAATCAAGTTATTTTTATCAATCACAAATCATAAGACACTATATATAGACAGAACATCCAAAAATATATACGGCGTCTCAAATTAATAGTAATCACATTAGGACAGAAATGGGTGATGTTGAAAAAGTGTCAAGAAAATATGTACTATGTTGGCTCACCGGGTCATTTTCACAAAAAATGTGCTAATGTTGCCCACCATTCGTACTTGATTTTGTATTTTATTTAATTTTGTGGACACTGTATTACCATTGCACTTTTAATATAATTAACTGTTAAATTGTCTTTTTTTTTTTTTGGCTTTCGCACCGGTTTCCGACCCACCAAAGGTGGACGACTAATCCGGCTCATGCATAGAGGCATGTGCACTGGCCAAGCGTTGTTAAATTGTATTTTTATTATTATTGTTTATTTGTAAATTAATTAAAAATATTAATATACGAGGCAAAACAAATTCGAAATGTAATTTATTCAGAAAAAACACGATAAATCATAAAAAGAATACTCAAGTAAAATCACATCAACTTAGATAAACAAACATAACCATAATCTATTCTGCTTGAACAATCAGCCACATCGGTCCTTTCCCACCTTCTTCTAACTGAATCATGTCTTGTACATCAATGTCATTATCAAGAAGCTTAAGATGCAAGGGTCGCCATATAAAATACACAACACCTTTCGAGTGCCACTGGCTAAATAAAAAAAATTGGTTGAGCTACTCCTCCAACTCTGATAATGTCTTTGTTGGAATTAATAACATTTGAAATGGCTTCTTTATATGCTGGAACTTAACTTTGGTGCGTACTAGAGTAGACATGAAGGAAATGAGATGAGAGAAATTGTAAGAAGAATAGATGAAATTTGTGGATGATGGAGAAACCGAACACATCTATTTATATATGATTATGTAAATTTCTTTGTTTTCTTGTGAATTGAACTTTTGTTTTAGGTGATGATCAAAAGAAAAAGTTTCTCAACCTTTGTGTTCCCATTCACAAGCATGCTCTAAATGGAAACTGGCCAGCAGCCAAGCGCATCTTAGACATAGAGAATAAGCTGAAAAATGCTGCCATAACAAATGGGTGGCCTACACTATTGCATATTGCTGCAGGTGCAAACCACATCCACTTTGTGAAGGAGTTATTGAATATGCTTGATGACAGTGATATCGCATTGCAAGATGTCAACGGAAACACCGCTTTTTGCTTTGCTGCTGCAGCTGGAAACATGGAAATTGTTGACTTAATGTTGGATAGGAACCCACTGTTACCTGTAAAAAGGGGTGGAAAGGGATATACTCCTATTCAGTATGCTGCTTTGCAAGGAAGATGCAAAATGACATGGCATCTATATGATAAAACAATACATCGTTTTGAAGATGAGGACTGGGAATTATTGTTCTTCGCTTGTATCTACACTGGCATCTATGGTAAGTATTACTGAAAGTTGAAATTCAATTAAAGTGACTAATTTAGAGAGATTGAAATTGTCATTTGTTTGCCAACATTAGAGACTAATAGTTTAGCAACATTATTATGCAAATCAGTCTTTAAATTGATCACAAATTAATTAGTTTAGCGACTAATTGAGAGACCGATTTAGGGACTAGTTAGAAAATCTGATCCCTAAATCGACCACTATTAAGATTTCAACAATTTGATCACTAAACCGGGCTCTAACTATAGAATTTTGAGTAGTTCATATGGTCTATTCGGTGACAATGCTTAAGAAAAAGGTTTGAAAATCTAACAACAAATGATAATCCTTTCAAGTGCAAGTTTTAATATTAATTGTCTTCACAAATGAAACGGTAGCCCAATTGACCGGAGAAGGGTTAAAAAACAAGGCAAATAATTTTTTTTTAAGGAGAATGTTAGTAGTTAGTTGTTAGATTAATATTAACCCTTTACTCTTTTGTCTGCGTTTGAACTCAGTACCTCCAACTCCTTAACATTTAGCTCAAACCAGTTGAGCTACCAAACCCCCTAACGCAAACAAATATTAATGCCTTAATACACAACTTATATTAGTTTCCTATTGGCTTTGTCCAATCAACACCGATTTGATCACCGTTTCAGCTATAATGAATTTGAGGTCTCTAAACTTCTATTTAAAGGTGGCAACTTCATTTTTTGTCTAAGTTATGAGCGATTTTCCATCATCGGTCCACCATAGACAACATGGGATATTTCCAGAACTTCTCATTTGCAAAAATATTGATCAATATAATGTTCTCCAATTGCAGACTTAGCCTTAAAAATGGTAAGAGATAGGAATGCACTAGCTTTTGCACGTGATGTGAATGAAGAGACAGCTTTGCATCTCTTGGCTCAAAATCGAATGCCTTTGGATTCTGGTTGTCATTGTCCTGAACATGATCATAATCCCATAATGACCAATCCTGGTAAACCCTTGCATTAAATTTTATATTTTTTAAATTCTTTTACATTGGTTTCATTAACAAGTAACCATATTTCGTATTGCAGGCATGAAAAATCACGTTGTTTTCCAATTGGTTAAATTTCTTTGGACCACGATTCTTGAAAAACACTACTCATCAAAGCCGGAGTTAAATGAAATCATTAATCAACCTTCTCAACTAATATTTGATGCTGCAGAAGTTGGAAATTTTGGATTCTTATCAGAGCTTATTAGTGTTTATCCTAGCTTGATATGGGATGTGGATAGCAAAAATCGTACTATATTACACATAGCTGTATTGCATCGGCATGCTAGTATATTCCATCTGGTCCATCAAATAGGGCATATAAAGGGTATCATTGTGACATATGAAAATGATGATGACAGAAACACTTTATTGCACTTGGCTGCAAAATTAGCACCACGAAGTCAACTTGAATTGGTTTCTGGAGCTGCTTTTCAAATGTGCGTCGAGTTACTATGGTTTGAGGTACATGCAATGCAACCCTTTTTTATTCATTTTATTGAGGAATTAAAAGCGAGCTACTTCCACACTTATCCATTCCACTATATAAATAAAACTCTTAATGGAATATGTGTTTGCCACTGTCTCAATAGCAATATAAAATATTTACGTATCTGTATTTTACTTAACATATATACATTTTCATGTGACAGAAAGTAAAGAAGATAATGTTGCCTGCACAGATAAAGATGAGAAACTCGGAAGGCTTTACTGCACAAGAGCTATTCTCAATTGAGCATGAAACACTAAGAGAACACGCAGAGTCGTGGATGAAAAAAACTGCCGAGTCTTGCATGCTAATTTCAACTGTGATTGCTACCGGAGTGTTTGCTGCTGCAACTACTTTACCAGGTGGTACTGATGACTCTGGAAAACCACACTATTTGAATAAAACATCATTCTTGGTGTTTGCAATATCAGATGCATCTGCATTCATCTCATCTGCGACCGCGATATTGATTTTCTTGTCTATTCTTGTCTCGCGTTATGGAGAGTATGACTTCTATAAATCACTGCCTTTAAAGCTAATATGTGGATTGGTCACATTATTTATCTCCGTAACAAGCATGATGGTAGCATTAATTACTAACTTCTTCATAGTATACTACCATGGTTCGACATTGGTTCCTAGTTTCATCTCAATATTCTCTTTCCTCCCAATACTTTTGTACATAGGTTTGCAATATTCTTTGTTTTCAGATATCATTTACTCAACCTACTATTGGAGTACTCTATCTAAGCCTGGCAAAAATATGATTTACGTACTAGAGAAGTAG
Protein sequence

>MS.gene000079.t1

MDNTIIEGRSISKPPYFDGTNCTEWKERTKIFIQSVDYKLWLVIKNGPKIPKNLINGQEELKSEDEFNDEDMKNMEQEAKAKYILCCAINPDDLKRISSCQTAKEMWDELDKEVTTSNVNPTPPVSPQAPAAALYDTPNLEFLEETGDDQKKKFLNLCVPIHKHALNGNWPAAKRILDIENKLKNAAITNGWPTLLHIAAGANHIHFVKELLNMLDDSDIALQDVNGNTAFCFAAAAGNMEIVDLMLDRNPLLPVKRGGKGYTPIQYAALQGRCKMTWHLYDKTIHRFEDEDWELLFFACIYTGIYDLALKMVRDRNALAFARDVNEETALHLLAQNRMPLDSGCHCPEHDHNPIMTNPGMKNHVVFQLVKFLWTTILEKHYSSKPELNEIINQPSQLIFDAAEVGNFGFLSELISVYPSLIWDVDSKNRTILHIAVLHRHASIFHLVHQIGHIKGIIVTYENDDDRNTLLHLAAKLAPRSQLELVSGAAFQMCVELLWFEKVKKIMLPAQIKMRNSEGFTAQELFSIEHETLREHAESWMKKTAESCMLISTVIATGVFAAATTLPGGTDDSGKPHYLNKTSFLVFAISDASAFISSATAILIFLSILVSRYGEYDFYKSLPLKLICGLVTLFISVTSMMVALITNFFIVYYHGSTLVPSFISIFSFLPILLYIGLQYSLFSDIIYSTYYWSTLSKPGKNMIYVLEK