Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000646.t1 | XP_024639676.1 | 57.7 | 822 | 231 | 13 | 1 | 727 | 2 | 801 | 5.40E-233 | 817.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000646.t1 | A0A396HN29 | 51.0 | 743 | 333 | 12 | 1 | 725 | 1 | 730 | 2.0e-176 | 629.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene000646 | MS.gene76530 | PPI |
MS.gene000646 | MS.gene069865 | PPI |
MS.gene85145 | MS.gene000646 | PPI |
MS.gene000646 | MS.gene85146 | PPI |
MS.gene36347 | MS.gene000646 | PPI |
MS.gene36348 | MS.gene000646 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000646.t1 | MTR_5g028450 | 80.176 | 227 | 45 | 0 | 495 | 721 | 1 | 227 | 2.47e-128 | 383 |
MS.gene000646.t1 | MTR_5g028190 | 66.058 | 274 | 91 | 1 | 454 | 725 | 199 | 472 | 6.52e-119 | 367 |
MS.gene000646.t1 | MTR_5g028190 | 49.510 | 204 | 73 | 5 | 182 | 374 | 12 | 196 | 6.98e-45 | 169 |
MS.gene000646.t1 | MTR_5g028510 | 63.245 | 302 | 99 | 4 | 84 | 375 | 28 | 327 | 8.76e-116 | 352 |
MS.gene000646.t1 | MTR_5g028130 | 58.571 | 280 | 104 | 3 | 454 | 725 | 1 | 276 | 7.12e-103 | 319 |
MS.gene000646.t1 | MTR_5g028930 | 57.565 | 271 | 113 | 2 | 456 | 725 | 282 | 551 | 6.32e-94 | 305 |
MS.gene000646.t1 | MTR_5g028930 | 46.021 | 289 | 137 | 7 | 93 | 374 | 1 | 277 | 4.99e-53 | 194 |
MS.gene000646.t1 | MTR_5g091220 | 32.007 | 553 | 288 | 13 | 185 | 725 | 65 | 541 | 1.89e-62 | 220 |
MS.gene000646.t1 | MTR_3g055310 | 29.350 | 477 | 255 | 9 | 252 | 725 | 3 | 400 | 2.78e-54 | 194 |
MS.gene000646.t1 | MTR_5g028830 | 42.907 | 289 | 121 | 7 | 329 | 595 | 22 | 288 | 3.12e-54 | 188 |
MS.gene000646.t1 | MTR_3g055310 | 28.916 | 498 | 268 | 11 | 237 | 725 | 8 | 428 | 3.54e-54 | 194 |
MS.gene000646.t1 | MTR_3g055310 | 29.828 | 466 | 243 | 9 | 267 | 725 | 38 | 426 | 5.93e-54 | 194 |
MS.gene000646.t1 | MTR_3g055310 | 30.043 | 466 | 242 | 9 | 267 | 725 | 65 | 453 | 1.24e-53 | 193 |
MS.gene000646.t1 | MTR_3g055310 | 37.778 | 270 | 165 | 2 | 457 | 725 | 18 | 285 | 2.33e-52 | 185 |
MS.gene000646.t1 | MTR_3g055310 | 36.426 | 291 | 182 | 2 | 436 | 725 | 60 | 348 | 2.39e-52 | 187 |
MS.gene000646.t1 | MTR_2g438740 | 43.421 | 228 | 129 | 0 | 498 | 725 | 279 | 506 | 1.38e-49 | 183 |
MS.gene000646.t1 | MTR_5g028690 | 61.481 | 135 | 52 | 0 | 591 | 725 | 36 | 170 | 1.27e-48 | 171 |
MS.gene000646.t1 | MTR_3g455790 | 28.131 | 551 | 305 | 15 | 185 | 725 | 67 | 536 | 2.37e-46 | 174 |
MS.gene000646.t1 | MTR_6g017215 | 61.538 | 130 | 50 | 0 | 596 | 725 | 6 | 135 | 1.30e-44 | 160 |
MS.gene000646.t1 | MTR_2g438440 | 38.281 | 256 | 154 | 2 | 470 | 725 | 374 | 625 | 8.06e-43 | 166 |
MS.gene000646.t1 | MTR_2g438760 | 39.130 | 230 | 140 | 0 | 496 | 725 | 271 | 500 | 1.15e-42 | 164 |
MS.gene000646.t1 | MTR_2g438400 | 37.662 | 231 | 143 | 1 | 495 | 725 | 255 | 484 | 2.57e-41 | 159 |
MS.gene000646.t1 | MTR_2g020450 | 27.107 | 605 | 342 | 18 | 187 | 721 | 42 | 617 | 5.81e-41 | 160 |
MS.gene000646.t1 | MTR_5g028110 | 58.594 | 128 | 35 | 1 | 598 | 725 | 4 | 113 | 1.15e-40 | 147 |
MS.gene000646.t1 | MTR_2g438720 | 38.793 | 232 | 140 | 2 | 495 | 725 | 401 | 631 | 6.89e-40 | 157 |
MS.gene000646.t1 | MTR_2g438700 | 38.362 | 232 | 141 | 2 | 495 | 725 | 399 | 629 | 2.31e-39 | 155 |
MS.gene000646.t1 | MTR_2g438700 | 29.278 | 263 | 142 | 12 | 86 | 316 | 69 | 319 | 5.15e-12 | 69.7 |
MS.gene000646.t1 | MTR_3g452020 | 35.249 | 261 | 166 | 2 | 440 | 699 | 77 | 335 | 1.01e-38 | 149 |
MS.gene000646.t1 | MTR_2g438640 | 37.662 | 231 | 143 | 1 | 495 | 725 | 401 | 630 | 1.59e-38 | 153 |
MS.gene000646.t1 | MTR_5g028900 | 57.364 | 129 | 43 | 2 | 597 | 725 | 3 | 119 | 3.30e-38 | 139 |
MS.gene000646.t1 | MTR_3g452020 | 35.249 | 261 | 166 | 2 | 440 | 699 | 253 | 511 | 6.79e-38 | 150 |
MS.gene000646.t1 | MTR_2g020510 | 36.797 | 231 | 145 | 1 | 495 | 725 | 390 | 619 | 3.01e-37 | 149 |
MS.gene000646.t1 | MTR_5g028840 | 53.077 | 130 | 61 | 0 | 596 | 725 | 2 | 131 | 4.95e-37 | 138 |
MS.gene000646.t1 | MTR_3g058570 | 36.596 | 235 | 139 | 3 | 494 | 721 | 83 | 314 | 2.92e-36 | 141 |
MS.gene000646.t1 | MTR_2g020470 | 24.838 | 616 | 330 | 19 | 187 | 725 | 42 | 601 | 4.83e-34 | 139 |
MS.gene000646.t1 | MTR_2g438640 | 35.931 | 231 | 121 | 2 | 495 | 725 | 401 | 604 | 6.88e-34 | 139 |
MS.gene000646.t1 | MTR_2g017930 | 27.365 | 592 | 333 | 18 | 179 | 725 | 44 | 583 | 8.43e-34 | 138 |
MS.gene000646.t1 | MTR_5g028920 | 47.917 | 144 | 71 | 2 | 456 | 598 | 87 | 227 | 1.10e-31 | 124 |
MS.gene000646.t1 | MTR_5g085350 | 32.589 | 224 | 146 | 3 | 495 | 714 | 424 | 646 | 8.30e-29 | 123 |
MS.gene000646.t1 | MTR_5g085350 | 32.589 | 224 | 146 | 3 | 495 | 714 | 437 | 659 | 9.15e-29 | 123 |
MS.gene000646.t1 | MTR_5g085340 | 31.579 | 228 | 149 | 3 | 495 | 716 | 443 | 669 | 9.20e-28 | 120 |
MS.gene000646.t1 | MTR_3g050500 | 31.933 | 238 | 151 | 5 | 494 | 724 | 427 | 660 | 4.71e-27 | 117 |
MS.gene000646.t1 | MTR_5g085360 | 28.866 | 291 | 163 | 7 | 476 | 725 | 382 | 669 | 1.35e-25 | 113 |
MS.gene000646.t1 | MTR_3g051060 | 30.901 | 233 | 157 | 3 | 496 | 725 | 435 | 666 | 4.98e-24 | 108 |
MS.gene000646.t1 | MTR_2g438640 | 28.571 | 315 | 157 | 7 | 477 | 725 | 215 | 527 | 1.37e-23 | 106 |
MS.gene000646.t1 | MTR_1g113820 | 32.093 | 215 | 138 | 3 | 494 | 705 | 275 | 484 | 7.05e-23 | 103 |
MS.gene000646.t1 | MTR_2g438470 | 38.346 | 133 | 81 | 1 | 540 | 672 | 366 | 497 | 2.49e-18 | 89.4 |
MS.gene000646.t1 | MTR_1g113760 | 30.942 | 223 | 147 | 5 | 494 | 712 | 239 | 458 | 2.32e-16 | 83.2 |
MS.gene000646.t1 | MTR_1g113730 | 28.241 | 216 | 141 | 6 | 494 | 700 | 45 | 255 | 7.59e-13 | 71.2 |
MS.gene000646.t1 | MTR_2g438580 | 39.024 | 82 | 49 | 1 | 610 | 691 | 2 | 82 | 2.33e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene000646.t1 | AT3G18670 | 35.420 | 559 | 293 | 13 | 180 | 727 | 79 | 580 | 9.83e-94 | 305 |
MS.gene000646.t1 | AT3G18670 | 32.616 | 558 | 255 | 19 | 180 | 727 | 79 | 525 | 6.62e-68 | 234 |
MS.gene000646.t1 | AT5G04700 | 31.638 | 531 | 289 | 12 | 202 | 725 | 132 | 595 | 2.31e-61 | 218 |
MS.gene000646.t1 | AT5G04690 | 30.965 | 549 | 297 | 14 | 187 | 725 | 111 | 587 | 4.11e-59 | 212 |
MS.gene000646.t1 | AT5G04730 | 30.769 | 546 | 290 | 14 | 199 | 726 | 55 | 530 | 2.00e-57 | 206 |
MS.gene000646.t1 | AT5G04690 | 30.601 | 549 | 285 | 15 | 187 | 725 | 111 | 573 | 3.37e-56 | 203 |
MS.gene000646.t1 | AT5G04680 | 30.534 | 524 | 312 | 11 | 216 | 725 | 135 | 620 | 1.69e-53 | 197 |
MS.gene000646.t1 | AT5G04680 | 30.153 | 524 | 285 | 12 | 216 | 725 | 12 | 468 | 2.05e-53 | 193 |
MS.gene000646.t1 | AT5G04680 | 30.153 | 524 | 285 | 12 | 216 | 725 | 135 | 591 | 6.52e-53 | 194 |
MS.gene000646.t1 | AT5G35810 | 41.423 | 239 | 134 | 2 | 495 | 727 | 35 | 273 | 6.63e-51 | 181 |
MS.gene000646.t1 | AT5G04680 | 29.580 | 524 | 274 | 13 | 216 | 725 | 135 | 577 | 1.15e-49 | 185 |
MS.gene000646.t1 | AT5G04690 | 38.947 | 285 | 159 | 6 | 448 | 725 | 277 | 553 | 9.91e-47 | 176 |
MS.gene000646.t1 | AT3G54065 | 46.667 | 150 | 74 | 1 | 582 | 725 | 8 | 157 | 5.57e-38 | 142 |
MS.gene000646.t1 | AT5G04700 | 26.119 | 402 | 224 | 11 | 202 | 597 | 132 | 466 | 6.21e-23 | 103 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGGACTAATTTCAAAATTT+TGG | 0.065840 | 5.1:+19460684 | None:intergenic |
TTGTCAAAGGTGAGCACTTC+TGG | 0.227767 | 5.1:+19470038 | None:intergenic |
TGATTCTGCTGAGGCTTTCT+TGG | 0.227956 | 5.1:-19469946 | MS.gene000646:CDS |
AAGAGAAATTCAATGGTTTA+AGG | 0.238103 | 5.1:-19459573 | MS.gene000646:intron |
TGCATCAATGCTGAAATATT+TGG | 0.240596 | 5.1:-19463494 | MS.gene000646:intron |
TTAATATCTCCTTCCGTTCA+TGG | 0.279585 | 5.1:+19459699 | None:intergenic |
GTTGAGAGTGGTAATTATAT+TGG | 0.289169 | 5.1:-19463925 | MS.gene000646:CDS |
TATACGCATTGTGAAGTTAT+AGG | 0.297422 | 5.1:-19459956 | MS.gene000646:CDS |
ACTAAGCTTGAGAATTTATC+AGG | 0.302998 | 5.1:+19462550 | None:intergenic |
TTCACGGGACACCTGGGAAT+TGG | 0.311993 | 5.1:+19463672 | None:intergenic |
TTGCACCTGGCAGCACATTT+AGG | 0.312784 | 5.1:-19459644 | MS.gene000646:CDS |
GCTCTTGTTGCTCGTTATAC+TGG | 0.317566 | 5.1:-19463739 | MS.gene000646:CDS |
GTAAATTACAGCTGTACTAT+TGG | 0.323674 | 5.1:-19463992 | MS.gene000646:intron |
TCTCAGTTCCTAACTTGCTT+AGG | 0.338213 | 5.1:-19462603 | MS.gene000646:CDS |
ATTCTTCTAGCTGCTGCTAA+TGG | 0.346856 | 5.1:-19463611 | MS.gene000646:CDS |
TTGCAACAGTTGTTACATTT+CGG | 0.359265 | 5.1:+19460611 | None:intergenic |
TTGCCTTGGAAGTTATTGTT+AGG | 0.361528 | 5.1:-19458913 | MS.gene000646:intron |
CTTCATGTTGCAGTAATTGC+TGG | 0.370624 | 5.1:-19463847 | MS.gene000646:CDS |
ATTATCATTACCTAGTGATA+TGG | 0.373842 | 5.1:-19462575 | MS.gene000646:CDS |
AAAGTTTGATAATGATTCCT+TGG | 0.374093 | 5.1:+19462630 | None:intergenic |
AATGATTCCCTAAGCAAGTT+AGG | 0.376247 | 5.1:+19462595 | None:intergenic |
TCTGATTCTGATAGCAAATC+TGG | 0.378054 | 5.1:-19459614 | MS.gene000646:CDS |
TTTCTTTGTATAAAGTTTGC+AGG | 0.379251 | 5.1:-19460517 | MS.gene000646:intron |
ATCATGTGGACAGCAGATTC+AGG | 0.382139 | 5.1:-19464601 | MS.gene000646:CDS |
TTAGCAGCAGCTAGAAGAAT+AGG | 0.383138 | 5.1:+19463614 | None:intergenic |
CTCAGTTCCTAACTTGCTTA+GGG | 0.384524 | 5.1:-19462602 | MS.gene000646:CDS |
GGAGATATTAAGATCTTCTA+AGG | 0.388498 | 5.1:-19459687 | MS.gene000646:CDS |
TAGTGAAACTTGGAGAGAAA+TGG | 0.395190 | 5.1:-19459182 | MS.gene000646:CDS |
CATTTCTGCCGAAGCTAGAC+TGG | 0.403144 | 5.1:+19460548 | None:intergenic |
AATGTGCTGCCAGGTGCAAC+AGG | 0.404340 | 5.1:+19459648 | None:intergenic |
TGGCCTGCGGAAGAAGTCTT+TGG | 0.407484 | 5.1:+19460568 | None:intergenic |
CACTCTCAACCTTCGTGAAT+AGG | 0.409917 | 5.1:+19463938 | None:intergenic |
CACAATGAGCTAGTGAAACT+TGG | 0.415466 | 5.1:-19459192 | MS.gene000646:CDS |
GATCTGCTTAAAGTTGTAGA+TGG | 0.419203 | 5.1:-19459794 | MS.gene000646:CDS |
AGGAAATTCAAAGATGACTA+TGG | 0.419582 | 5.1:-19460712 | MS.gene000646:CDS |
TCTCTTTCAACTTCATAAGA+AGG | 0.421034 | 5.1:+19464672 | None:intergenic |
GTAAATATGCAAGACAATAA+TGG | 0.429935 | 5.1:-19463775 | MS.gene000646:CDS |
GATCTCGATTATTCCATGTT+GGG | 0.430800 | 5.1:+19459844 | None:intergenic |
CCGTAGCTGATCTTAGCATT+TGG | 0.431301 | 5.1:-19460642 | MS.gene000646:CDS |
CGATCTCGATTATTCCATGT+TGG | 0.434750 | 5.1:+19459843 | None:intergenic |
GGTGGAAACAATCAAGAAAC+TGG | 0.435986 | 5.1:-19459078 | MS.gene000646:CDS |
ATTCTCAAGCTTAGTTGCAT+TGG | 0.442953 | 5.1:-19462542 | MS.gene000646:CDS |
AAGTTTGATAATGATTCCTT+GGG | 0.450119 | 5.1:+19462631 | None:intergenic |
CAAGTGTTCCCATGCCGATC+GGG | 0.452226 | 5.1:+19464554 | None:intergenic |
GTTTCTTGATTGTTTCCACC+TGG | 0.457687 | 5.1:+19459081 | None:intergenic |
CTCAAAGAGGCTTCGGCGTA+TGG | 0.458440 | 5.1:-19459884 | MS.gene000646:CDS |
TCTACAACTTTAAGCAGATC+AGG | 0.462720 | 5.1:+19459797 | None:intergenic |
AGTGAAACTTGGAGAGAAAT+GGG | 0.464174 | 5.1:-19459181 | MS.gene000646:CDS |
TACGATGTTGATCAAGCCTA+TGG | 0.464907 | 5.1:+19463965 | None:intergenic |
TTCCCAAGTGGTACTCGACT+TGG | 0.465920 | 5.1:-19462502 | MS.gene000646:CDS |
TTATATTGGAAACATCATTA+CGG | 0.471882 | 5.1:-19463911 | MS.gene000646:CDS |
GCTGCAGCGTTTACAGTCCC+AGG | 0.476532 | 5.1:-19459099 | MS.gene000646:CDS |
ATGTTGTCATGCAAGAAGAT+AGG | 0.481126 | 5.1:+19459051 | None:intergenic |
TTCACAACTCAAAGAGGCTT+CGG | 0.484165 | 5.1:-19459891 | MS.gene000646:CDS |
TAGCAGCAGCTAGAAGAATA+GGG | 0.484571 | 5.1:+19463615 | None:intergenic |
AAATTACTCAAGGGTTTCCA+TGG | 0.484960 | 5.1:-19462658 | MS.gene000646:CDS |
TTTCATATGCTATTCTGTAT+CGG | 0.485203 | 5.1:-19459754 | MS.gene000646:CDS |
TCCGCAGGCCAGTCTAGCTT+CGG | 0.485913 | 5.1:-19460556 | MS.gene000646:CDS |
CCGATCGGCATGGGAACACT+TGG | 0.495245 | 5.1:-19464553 | MS.gene000646:CDS |
ATCTGATGGGGCAAGGTCTG+TGG | 0.496442 | 5.1:-19469983 | MS.gene000646:CDS |
GTACATATAACATCCCCTTC+AGG | 0.498913 | 5.1:-19463880 | MS.gene000646:CDS |
AAATGCAAAGAGAAATTCAA+TGG | 0.499653 | 5.1:-19459580 | MS.gene000646:CDS |
AGCAGCATCTTATACAATTG+TGG | 0.501568 | 5.1:-19459148 | MS.gene000646:CDS |
CCAAGTGTTCCCATGCCGAT+CGG | 0.504360 | 5.1:+19464553 | None:intergenic |
AACTAAGCGGTCCAATTCCC+AGG | 0.506629 | 5.1:-19463683 | MS.gene000646:CDS |
ACGAGTGTTGCCTCCTCCGT+TGG | 0.508233 | 5.1:-19470068 | MS.gene000646:CDS |
CTCTTTCAACTTCATAAGAA+GGG | 0.511399 | 5.1:+19464673 | None:intergenic |
ACTTTCTCAAGAGCTTGCCT+TGG | 0.512356 | 5.1:-19458927 | MS.gene000646:CDS |
TTTCTTGATTGTTTCCACCT+GGG | 0.517151 | 5.1:+19459082 | None:intergenic |
TCCATCAAACACTTCGGAGG+GGG | 0.518439 | 5.1:+19463553 | None:intergenic |
GACAAACTAGATGGATTGCC+AGG | 0.519484 | 5.1:-19464504 | MS.gene000646:intron |
TAATGATTCACAACTCAAAG+AGG | 0.531887 | 5.1:-19459897 | MS.gene000646:CDS |
ATGATTCCTTGGGCAGTCCA+TGG | 0.535830 | 5.1:+19462641 | None:intergenic |
TTGAAACAGCCCGATCGGCA+TGG | 0.536799 | 5.1:-19464563 | MS.gene000646:CDS |
TCGGCATGGGAACACTTGGC+TGG | 0.537875 | 5.1:-19464549 | MS.gene000646:CDS |
TGAAACAGCCCGATCGGCAT+GGG | 0.538622 | 5.1:-19464562 | MS.gene000646:CDS |
ATGCAGATTTGAACGTGGAA+AGG | 0.539577 | 5.1:-19460732 | MS.gene000646:intron |
AATCCAAGTCGAGTACCACT+TGG | 0.540556 | 5.1:+19462499 | None:intergenic |
CCACCTTTCGTAGTTGTCAA+AGG | 0.541238 | 5.1:+19470025 | None:intergenic |
CCTGCGGAAGAAGTCTTTGG+TGG | 0.541480 | 5.1:+19460571 | None:intergenic |
GCAGCATCTTATACAATTGT+GGG | 0.543510 | 5.1:-19459147 | MS.gene000646:CDS |
TGACAATAGCCTGTTGCACC+TGG | 0.545256 | 5.1:-19459657 | MS.gene000646:CDS |
GTTGTAGATGGTTACAATAG+AGG | 0.545720 | 5.1:-19459782 | MS.gene000646:CDS |
TGTGGCTTTGAAATTACTCA+AGG | 0.546767 | 5.1:-19462668 | MS.gene000646:CDS |
CCAAATGCTAAGATCAGCTA+CGG | 0.551285 | 5.1:+19460642 | None:intergenic |
TAAACTTGAAACAGCCCGAT+CGG | 0.555527 | 5.1:-19464568 | MS.gene000646:CDS |
TCTGATGGGGCAAGGTCTGT+GGG | 0.558174 | 5.1:-19469982 | MS.gene000646:CDS |
TCTCCATCAAACACTTCGGA+GGG | 0.558727 | 5.1:+19463551 | None:intergenic |
CTGTACTATTGGACTACCAT+AGG | 0.560994 | 5.1:-19463981 | MS.gene000646:CDS |
TCATAGATTGTCTCCATGAA+CGG | 0.565673 | 5.1:-19459712 | MS.gene000646:CDS |
TGAAGAAGCGTCCTACCTGA+AGG | 0.568009 | 5.1:+19463865 | None:intergenic |
GAAGAAGCGTCCTACCTGAA+GGG | 0.568201 | 5.1:+19463866 | None:intergenic |
TGGAACTATTCCAACGGAGG+AGG | 0.568324 | 5.1:+19470058 | None:intergenic |
GGGTTTCCATGGACTGCCCA+AGG | 0.586695 | 5.1:-19462647 | MS.gene000646:CDS |
CATATCATTCAAATATCATG+TGG | 0.590012 | 5.1:-19464615 | MS.gene000646:CDS |
CAAGTTTCACTAGCTCATTG+TGG | 0.590946 | 5.1:+19459193 | None:intergenic |
ACCTTGCTCAATATCTGATG+TGG | 0.592003 | 5.1:+19469866 | None:intergenic |
AAGAAGCGTCCTACCTGAAG+GGG | 0.594099 | 5.1:+19463867 | None:intergenic |
GTACCACTTGGGAAAGCTGA+AGG | 0.594573 | 5.1:+19462511 | None:intergenic |
AGACCTAACAATAACTTCCA+AGG | 0.597560 | 5.1:+19458910 | None:intergenic |
AATGAAAATCAAGACAGAAG+TGG | 0.598205 | 5.1:+19458981 | None:intergenic |
ATGCCTTCAGCTTTCCCAAG+TGG | 0.603248 | 5.1:-19462514 | MS.gene000646:CDS |
ATGTTGGGCTGCATTCAACA+TGG | 0.610111 | 5.1:+19459859 | None:intergenic |
CACTTCTGGAACTATTCCAA+CGG | 0.610588 | 5.1:+19470052 | None:intergenic |
GTGGCTTTGAAATTACTCAA+GGG | 0.610802 | 5.1:-19462667 | MS.gene000646:CDS |
CCTTTGACAACTACGAAAGG+TGG | 0.613323 | 5.1:-19470025 | MS.gene000646:CDS |
ATCCAAGTCGAGTACCACTT+GGG | 0.616796 | 5.1:+19462500 | None:intergenic |
TCCACATCAGATATTGAGCA+AGG | 0.618230 | 5.1:-19469867 | MS.gene000646:intron |
AAACGCTGCAGCAAACATGA+TGG | 0.620609 | 5.1:+19459110 | None:intergenic |
ATCGTCTCCATCAAACACTT+CGG | 0.622560 | 5.1:+19463547 | None:intergenic |
GTCTCCATCAAACACTTCGG+AGG | 0.623857 | 5.1:+19463550 | None:intergenic |
AGATTGTCTCCATGAACGGA+AGG | 0.625661 | 5.1:-19459708 | MS.gene000646:CDS |
ATGTTGAATGCAGCCCAACA+TGG | 0.628886 | 5.1:-19459857 | MS.gene000646:CDS |
TTATCAGGTACCATATCACT+AGG | 0.629896 | 5.1:+19462565 | None:intergenic |
AAGAACCTAAATGTGCTGCC+AGG | 0.631007 | 5.1:+19459639 | None:intergenic |
TATCAGTGGTGATTCTGCTG+AGG | 0.634312 | 5.1:-19469955 | MS.gene000646:CDS |
CTCCATCAAACACTTCGGAG+GGG | 0.636380 | 5.1:+19463552 | None:intergenic |
CCACCAAAGACTTCTTCCGC+AGG | 0.636939 | 5.1:-19460571 | MS.gene000646:CDS |
AACGGAGGAGGCAACACTCG+TGG | 0.638499 | 5.1:+19470070 | None:intergenic |
GATCGTAAATGCTATGAGAG+AGG | 0.638925 | 5.1:-19459825 | MS.gene000646:CDS |
TCACCTTTGACAACTACGAA+AGG | 0.649577 | 5.1:-19470028 | MS.gene000646:CDS |
CTATTCACGAAGGTTGAGAG+TGG | 0.675317 | 5.1:-19463937 | MS.gene000646:CDS |
TTCTGGAACTATTCCAACGG+AGG | 0.675899 | 5.1:+19470055 | None:intergenic |
GCCGAAGCTAGACTGGCCTG+CGG | 0.691002 | 5.1:+19460555 | None:intergenic |
ATATAACATCCCCTTCAGGT+AGG | 0.699224 | 5.1:-19463876 | MS.gene000646:CDS |
ATTGTATGCAGATTTGAACG+TGG | 0.711195 | 5.1:-19460737 | MS.gene000646:intron |
GCAGCGTTTACAGTCCCAGG+TGG | 0.715649 | 5.1:-19459096 | MS.gene000646:CDS |
GGAATATTGAGACACTTCTG+CGG | 0.716527 | 5.1:-19459935 | MS.gene000646:CDS |
GGTCTGTGGGATGTTATCAG+TGG | 0.717154 | 5.1:-19469969 | MS.gene000646:CDS |
TCGTAAAGACCTATTCACGA+AGG | 0.722721 | 5.1:-19463947 | MS.gene000646:CDS |
GCATGATAGAGAAAACTAAG+CGG | 0.754347 | 5.1:-19463696 | MS.gene000646:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 19458736 | 19470099 | 19458736 | ID=MS.gene000646 |
chr5.1 | mRNA | 19458736 | 19470099 | 19458736 | ID=MS.gene000646.t1;Parent=MS.gene000646 |
chr5.1 | exon | 19469868 | 19470099 | 19469868 | ID=MS.gene000646.t1.exon1;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19469868 | 19470099 | 19469868 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19464505 | 19464702 | 19464505 | ID=MS.gene000646.t1.exon2;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19464505 | 19464702 | 19464505 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19463677 | 19464003 | 19463677 | ID=MS.gene000646.t1.exon3;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19463677 | 19464003 | 19463677 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19463495 | 19463647 | 19463495 | ID=MS.gene000646.t1.exon4;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19463495 | 19463647 | 19463495 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19462476 | 19462691 | 19462476 | ID=MS.gene000646.t1.exon5;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19462476 | 19462691 | 19462476 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19460518 | 19460748 | 19460518 | ID=MS.gene000646.t1.exon6;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19460518 | 19460748 | 19460518 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19459574 | 19460004 | 19459574 | ID=MS.gene000646.t1.exon7;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19459574 | 19460004 | 19459574 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19458914 | 19459298 | 19458914 | ID=MS.gene000646.t1.exon8;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19458914 | 19459298 | 19458914 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
chr5.1 | exon | 19458736 | 19458752 | 19458736 | ID=MS.gene000646.t1.exon9;Parent=MS.gene000646.t1 |
chr5.1 | CDS | 19458736 | 19458752 | 19458736 | ID=cds.MS.gene000646.t1;Parent=MS.gene000646.t1 |
Gene Sequence |
Protein sequence |