Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000732.t1 | XP_003616384.1 | 92.5 | 212 | 5 | 2 | 1 | 202 | 1 | 211 | 1.70E-99 | 372.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000732.t1 | Q6NLC8 | 50.7 | 211 | 91 | 7 | 1 | 200 | 1 | 209 | 1.7e-44 | 180.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000732.t1 | G7KBN9 | 92.5 | 212 | 5 | 2 | 1 | 202 | 1 | 211 | 1.2e-99 | 372.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000732 | MS.gene83133 | PPI |
| MS.gene000732 | MS.gene006970 | PPI |
| MS.gene026608 | MS.gene000732 | PPI |
| MS.gene000732 | MS.gene62991 | PPI |
| MS.gene59144 | MS.gene000732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000732.t1 | MTR_5g079610 | 92.453 | 212 | 5 | 2 | 1 | 202 | 1 | 211 | 2.08e-138 | 385 |
| MS.gene000732.t1 | MTR_3g067730 | 60.811 | 222 | 59 | 7 | 1 | 200 | 1 | 216 | 3.87e-77 | 230 |
| MS.gene000732.t1 | MTR_1g030740 | 53.409 | 176 | 73 | 3 | 1 | 175 | 1 | 168 | 7.76e-57 | 179 |
| MS.gene000732.t1 | MTR_4g085100 | 46.377 | 207 | 84 | 5 | 1 | 189 | 1 | 198 | 1.83e-50 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000732.t1 | AT1G66480 | 56.497 | 177 | 68 | 6 | 1 | 170 | 1 | 175 | 1.82e-59 | 186 |
| MS.gene000732.t1 | AT5G37840 | 53.261 | 184 | 78 | 4 | 1 | 182 | 1 | 178 | 1.21e-55 | 176 |
| MS.gene000732.t1 | AT2G01340 | 52.907 | 172 | 69 | 5 | 1 | 171 | 1 | 161 | 1.93e-52 | 167 |
| MS.gene000732.t1 | AT1G71015 | 50.588 | 170 | 75 | 5 | 1 | 170 | 1 | 161 | 2.31e-39 | 134 |
| MS.gene000732.t1 | AT1G71015 | 50.588 | 170 | 75 | 5 | 1 | 170 | 1 | 161 | 2.31e-39 | 134 |
Find 53 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACCACCATCATCAAATT+TGG | 0.171380 | 5.2:-60003493 | MS.gene000732:CDS |
| GAAGATTATGAGTTTGTATA+TGG | 0.227289 | 5.2:-60003364 | MS.gene000732:CDS |
| TCATCTTGGGGCTCAATCTT+AGG | 0.230505 | 5.2:+60003630 | None:intergenic |
| CCACTAGAACGTACCCTTCT+AGG | 0.234144 | 5.2:+60003594 | None:intergenic |
| CATCAAATTTGGGCTTTGAT+AGG | 0.291266 | 5.2:-60003482 | MS.gene000732:CDS |
| GGCTTTGATAGGCCCTTTGA+TGG | 0.319942 | 5.2:-60003471 | MS.gene000732:CDS |
| GAGTTCTTGATTTGGCTCTA+AGG | 0.329180 | 5.2:+60003686 | None:intergenic |
| CAGTAAAACACTTCGGGCTT+AGG | 0.335787 | 5.2:-60003716 | MS.gene000732:CDS |
| GCTAAGATTATGAAGATAGA+TGG | 0.365523 | 5.2:-60003822 | MS.gene000732:CDS |
| CTCAAGCAGTAAAACACTTC+GGG | 0.366167 | 5.2:-60003722 | MS.gene000732:CDS |
| TTGGGCTTGAGTTCTTGATT+TGG | 0.367392 | 5.2:+60003678 | None:intergenic |
| GGGTACGTTCTAGTGGAATA+AGG | 0.370431 | 5.2:-60003587 | MS.gene000732:CDS |
| ACAACTTCGTTTGATGTTGT+TGG | 0.390472 | 5.2:+60003777 | None:intergenic |
| AAACCACCATCATCAAATTT+GGG | 0.402951 | 5.2:-60003492 | MS.gene000732:CDS |
| GGAGTTTCTTCAATCTCCAT+TGG | 0.424574 | 5.2:+60001077 | None:intergenic |
| AGTTCTTGATTTGGCTCTAA+GGG | 0.425177 | 5.2:+60003687 | None:intergenic |
| AGCCCAGTTGGAAAAGTTGA+TGG | 0.431835 | 5.2:-60003418 | MS.gene000732:CDS |
| CAATCTTAGGTAAATCTACT+AGG | 0.436236 | 5.2:+60003643 | None:intergenic |
| TATTGAGGAGCTGCTTCAAC+AGG | 0.453932 | 5.2:+60001056 | None:intergenic |
| TTGATGGAAGAAAGTAATGA+TGG | 0.458160 | 5.2:-60003402 | MS.gene000732:CDS |
| AGTAAAACACTTCGGGCTTA+GGG | 0.459315 | 5.2:-60003715 | MS.gene000732:CDS |
| CACTAACGAAATATCTGAAA+CGG | 0.473609 | 5.2:+60003515 | None:intergenic |
| GAGTTTCTTCAATCTCCATT+GGG | 0.475580 | 5.2:+60001078 | None:intergenic |
| AAGATTATGAGTTTGTATAT+GGG | 0.479738 | 5.2:-60003363 | MS.gene000732:CDS |
| TAATGATGGGTCTGAGGTCG+CGG | 0.497077 | 5.2:-60003388 | MS.gene000732:CDS |
| CACCCTCATGGACCCATCAA+AGG | 0.503885 | 5.2:+60003458 | None:intergenic |
| AATAAGGAACGTGGATGCTA+AGG | 0.505115 | 5.2:-60003571 | MS.gene000732:CDS |
| AGAATCTAAGAGAACATGGT+TGG | 0.514582 | 5.2:+60003743 | None:intergenic |
| AAGCCTCATCTTCACCCTCA+TGG | 0.515255 | 5.2:+60003446 | None:intergenic |
| ACCCTCATGGACCCATCAAA+GGG | 0.521258 | 5.2:+60003459 | None:intergenic |
| GCTTTGATAGGCCCTTTGAT+GGG | 0.524979 | 5.2:-60003470 | MS.gene000732:CDS |
| CCTAGAAGGGTACGTTCTAG+TGG | 0.534238 | 5.2:-60003594 | MS.gene000732:CDS |
| TATGGGTGGCGGTGGTGATG+CGG | 0.535186 | 5.2:-60003346 | MS.gene000732:CDS |
| GAATCTAAGAGAACATGGTT+GGG | 0.536739 | 5.2:+60003744 | None:intergenic |
| AAGCCCAAATTTGATGATGG+TGG | 0.537750 | 5.2:+60003489 | None:intergenic |
| GGGTGGCGGTGGTGATGCGG+CGG | 0.547156 | 5.2:-60003343 | MS.gene000732:CDS |
| CCTAAGAGGAAATACTATTG+AGG | 0.556467 | 5.2:+60001041 | None:intergenic |
| ATTATGAGTTTGTATATGGG+TGG | 0.558604 | 5.2:-60003360 | MS.gene000732:CDS |
| GAGGCTTCCTAAAGCCCAGT+TGG | 0.560896 | 5.2:-60003430 | MS.gene000732:CDS |
| TCAAAGCCCAAATTTGATGA+TGG | 0.561669 | 5.2:+60003486 | None:intergenic |
| TCTCAAGCAGTAAAACACTT+CGG | 0.563644 | 5.2:-60003723 | MS.gene000732:CDS |
| CTTGAGAATCTAAGAGAACA+TGG | 0.563823 | 5.2:+60003739 | None:intergenic |
| CCAATCATGGGAAACACCAT+AGG | 0.564589 | 5.2:-60003858 | None:intergenic |
| ATGAGTTTGTATATGGGTGG+CGG | 0.586739 | 5.2:-60003357 | MS.gene000732:CDS |
| ATAAGGAACGTGGATGCTAA+GGG | 0.588791 | 5.2:-60003570 | MS.gene000732:CDS |
| GGCCCTTTGATGGGTCCATG+AGG | 0.590646 | 5.2:-60003461 | MS.gene000732:CDS |
| GGTCCATGAGGGTGAAGATG+AGG | 0.594224 | 5.2:-60003449 | MS.gene000732:CDS |
| TGATGGAAGAAAGTAATGAT+GGG | 0.598253 | 5.2:-60003401 | MS.gene000732:CDS |
| GCCCTTTGATGGGTCCATGA+GGG | 0.621686 | 5.2:-60003460 | MS.gene000732:CDS |
| GGTGATGCGGCGGAGCATGA+CGG | 0.634118 | 5.2:-60003333 | MS.gene000732:CDS |
| AGTTTGTATATGGGTGGCGG+TGG | 0.641348 | 5.2:-60003354 | MS.gene000732:CDS |
| AGAAAGTAATGATGGGTCTG+AGG | 0.641587 | 5.2:-60003394 | MS.gene000732:CDS |
| TTCTAGTGGAATAAGGAACG+TGG | 0.683798 | 5.2:-60003580 | MS.gene000732:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTAAAAAAAATTATTGA+AGG | - | chr5.2:60002698-60002717 | MS.gene000732:intron | 10.0% |
| !! | TTGTAAAAAAAATTATTGAA+GGG | - | chr5.2:60002699-60002718 | MS.gene000732:intron | 10.0% |
| !!! | AAAGTATTATAAAAAATTAG+AGG | + | chr5.2:60002437-60002456 | None:intergenic | 10.0% |
| !!! | ATGATTTTATTTTTTTTGAA+AGG | + | chr5.2:60002209-60002228 | None:intergenic | 10.0% |
| !!! | TCTATATTTTAATACTTAAT+TGG | - | chr5.2:60002882-60002901 | MS.gene000732:intron | 10.0% |
| !!! | TTTAATAAAGGTTTTATTTT+TGG | - | chr5.2:60002979-60002998 | MS.gene000732:intron | 10.0% |
| !! | AAAATATAAGAAAAAAAGAG+AGG | - | chr5.2:60003489-60003508 | MS.gene000732:CDS | 15.0% |
| !! | AAGGTTTAAAAATAAGAATA+GGG | + | chr5.2:60001996-60002015 | None:intergenic | 15.0% |
| !!! | AATAACATTTAGATTTTGTT+TGG | - | chr5.2:60003521-60003540 | MS.gene000732:CDS | 15.0% |
| !!! | AATTCATTAACATAATTTTG+TGG | + | chr5.2:60003765-60003784 | None:intergenic | 15.0% |
| !!! | CAATTTTTTTTTCTTCAAAT+AGG | - | chr5.2:60002145-60002164 | MS.gene000732:intron | 15.0% |
| !!! | TTTTGTTGTTATTATTATCT+TGG | - | chr5.2:60001663-60001682 | MS.gene000732:intron | 15.0% |
| !! | AAAATAACATTCTTTCAAAG+TGG | - | chr5.2:60001763-60001782 | MS.gene000732:intron | 20.0% |
| !! | AACTACCCATTATATATTTA+AGG | + | chr5.2:60003022-60003041 | None:intergenic | 20.0% |
| !! | AAGATTATGAGTTTGTATAT+GGG | - | chr5.2:60001544-60001563 | MS.gene000732:intron | 20.0% |
| !! | AATAACTTAGTACCTAAAAT+AGG | + | chr5.2:60003739-60003758 | None:intergenic | 20.0% |
| !! | ACAACTATATAATAGACTTT+AGG | - | chr5.2:60002229-60002248 | MS.gene000732:intron | 20.0% |
| !! | ACTACCCATTATATATTTAA+GGG | + | chr5.2:60003021-60003040 | None:intergenic | 20.0% |
| !! | AGGTTTAAAAATAAGAATAG+GGG | + | chr5.2:60001995-60002014 | None:intergenic | 20.0% |
| !! | AGTAAGAAGAGTAAATTAAA+TGG | + | chr5.2:60002511-60002530 | None:intergenic | 20.0% |
| !! | ATCATTACTTAAAAAAGTGA+AGG | + | chr5.2:60002015-60002034 | None:intergenic | 20.0% |
| !! | GAAGGTTTAAAAATAAGAAT+AGG | + | chr5.2:60001997-60002016 | None:intergenic | 20.0% |
| !! | GAGAACATATTTAAATGATT+TGG | + | chr5.2:60002564-60002583 | None:intergenic | 20.0% |
| !! | TAATTTCGCTACATTAAAAT+TGG | - | chr5.2:60003070-60003089 | MS.gene000732:intron | 20.0% |
| !! | TGTTCGGTAAAAAAAAAAAA+GGG | + | chr5.2:60002483-60002502 | None:intergenic | 20.0% |
| !! | TTAAGCTTAAAAATTTGAGA+AGG | - | chr5.2:60002107-60002126 | MS.gene000732:intron | 20.0% |
| !! | TTCTCCCTTAAATATATAAT+GGG | - | chr5.2:60003014-60003033 | MS.gene000732:intron | 20.0% |
| !! | TTTCTCCCTTAAATATATAA+TGG | - | chr5.2:60003013-60003032 | MS.gene000732:intron | 20.0% |
| !!! | AAACTTATTAAAGGAGATTT+TGG | - | chr5.2:60003431-60003450 | MS.gene000732:CDS | 20.0% |
| !!! | AAGACTTTGGATTTTAATAA+AGG | - | chr5.2:60002967-60002986 | MS.gene000732:intron | 20.0% |
| !!! | ACTTAATTTTTTGTTGTACT+TGG | + | chr5.2:60002345-60002364 | None:intergenic | 20.0% |
| !!! | CATATATTGATTGCATTTTA+AGG | + | chr5.2:60003141-60003160 | None:intergenic | 20.0% |
| ! | AAAAAAAAAAGGGAAGACTT+AGG | + | chr5.2:60002473-60002492 | None:intergenic | 25.0% |
| ! | AGCACATATAGTAGAAAAAT+TGG | + | chr5.2:60002589-60002608 | None:intergenic | 25.0% |
| ! | GAAGATTATGAGTTTGTATA+TGG | - | chr5.2:60001543-60001562 | MS.gene000732:intron | 25.0% |
| ! | GGCACAATAAAACTTATTAA+AGG | - | chr5.2:60003422-60003441 | MS.gene000732:CDS | 25.0% |
| ! | GTGTTCGGTAAAAAAAAAAA+AGG | + | chr5.2:60002484-60002503 | None:intergenic | 25.0% |
| ! | TCATGTTAGAATTCGAATTT+GGG | - | chr5.2:60002743-60002762 | MS.gene000732:intron | 25.0% |
| ! | TTCATGTTAGAATTCGAATT+TGG | - | chr5.2:60002742-60002761 | MS.gene000732:intron | 25.0% |
| !! | ACTAGGAAGTAAATTTTCTT+GGG | + | chr5.2:60001250-60001269 | None:intergenic | 25.0% |
| !! | ATTCGATAGTTTCCTATTTT+AGG | - | chr5.2:60003724-60003743 | MS.gene000732:CDS | 25.0% |
| !! | ATTTTACTTGCTTCAATGTT+AGG | + | chr5.2:60003217-60003236 | None:intergenic | 25.0% |
| !! | TACTAGGAAGTAAATTTTCT+TGG | + | chr5.2:60001251-60001270 | None:intergenic | 25.0% |
| !! | TCCACTATAAACTTTTACAT+GGG | - | chr5.2:60002047-60002066 | MS.gene000732:intron | 25.0% |
| !! | TTCCACTATAAACTTTTACA+TGG | - | chr5.2:60002046-60002065 | MS.gene000732:intron | 25.0% |
| !!! | AAATTAAATGGAGAAGTGTT+CGG | + | chr5.2:60002499-60002518 | None:intergenic | 25.0% |
| !!! | ACCATAAAAGTATCTATATG+GGG | - | chr5.2:60002071-60002090 | MS.gene000732:intron | 25.0% |
| !!! | ATTTTTTGTTGTACTTGGAA+TGG | + | chr5.2:60002340-60002359 | None:intergenic | 25.0% |
| !!! | GACCATAAAAGTATCTATAT+GGG | - | chr5.2:60002070-60002089 | MS.gene000732:intron | 25.0% |
| !!! | TTTTTTGTTGTACTTGGAAT+GGG | + | chr5.2:60002339-60002358 | None:intergenic | 25.0% |
| AAACAATTTAAGTGCGTGTT+TGG | + | chr5.2:60003670-60003689 | None:intergenic | 30.0% | |
| AAACCACCATCATCAAATTT+GGG | - | chr5.2:60001415-60001434 | MS.gene000732:intron | 30.0% | |
| AAACTGTAAATGTTCTCTAG+CGG | + | chr5.2:60003312-60003331 | None:intergenic | 30.0% | |
| AATATGAGGAAAAGATAAGG+TGG | + | chr5.2:60002286-60002305 | None:intergenic | 30.0% | |
| AATTATTGAAGGGTAACACT+TGG | - | chr5.2:60002709-60002728 | MS.gene000732:intron | 30.0% | |
| ATTATGAGTTTGTATATGGG+TGG | - | chr5.2:60001547-60001566 | MS.gene000732:intron | 30.0% | |
| CAATCTTAGGTAAATCTACT+AGG | + | chr5.2:60001267-60001286 | None:intergenic | 30.0% | |
| CACTAACGAAATATCTGAAA+CGG | + | chr5.2:60001395-60001414 | None:intergenic | 30.0% | |
| GAGAATATGAGGAAAAGATA+AGG | + | chr5.2:60002289-60002308 | None:intergenic | 30.0% | |
| GCAATCAATATATGAAGTAG+AGG | - | chr5.2:60003147-60003166 | MS.gene000732:intron | 30.0% | |
| GCTAAGATTATGAAGATAGA+TGG | - | chr5.2:60001085-60001104 | MS.gene000732:CDS | 30.0% | |
| GGGATTTGAACTTAATTACT+TGG | - | chr5.2:60002825-60002844 | MS.gene000732:intron | 30.0% | |
| GTAACTTCTGCAAAAAATCA+CGG | - | chr5.2:60003609-60003628 | MS.gene000732:CDS | 30.0% | |
| TACCTTCATTCTCTTTCTAA+TGG | - | chr5.2:60002608-60002627 | MS.gene000732:intron | 30.0% | |
| TAGTGTTTGTGTAAGAATCA+CGG | + | chr5.2:60003642-60003661 | None:intergenic | 30.0% | |
| TCAAATACCCAATTTAGCAA+GGG | - | chr5.2:60003459-60003478 | MS.gene000732:CDS | 30.0% | |
| TCAAATAGGTCAAATATTGC+AGG | - | chr5.2:60002159-60002178 | MS.gene000732:intron | 30.0% | |
| TGATGGAAGAAAGTAATGAT+GGG | - | chr5.2:60001506-60001525 | MS.gene000732:intron | 30.0% | |
| TTCAAATACCCAATTTAGCA+AGG | - | chr5.2:60003458-60003477 | MS.gene000732:CDS | 30.0% | |
| TTGATGGAAGAAAGTAATGA+TGG | - | chr5.2:60001505-60001524 | MS.gene000732:intron | 30.0% | |
| ! | ACCCCATATAGATACTTTTA+TGG | + | chr5.2:60002075-60002094 | None:intergenic | 30.0% |
| ! | ATAGAAGCATAACAAGACTT+TGG | - | chr5.2:60002954-60002973 | MS.gene000732:intron | 30.0% |
| ! | ATGCTATGTGAAAAGGATTT+TGG | - | chr5.2:60003266-60003285 | MS.gene000732:intron | 30.0% |
| ! | CCACTATAAACTTTTACATG+GGG | - | chr5.2:60002048-60002067 | MS.gene000732:intron | 30.0% |
| ! | TGTTGGAGTTTTTACTTTGA+AGG | + | chr5.2:60001116-60001135 | None:intergenic | 30.0% |
| !! | GGACCATAAAAGTATCTATA+TGG | - | chr5.2:60002069-60002088 | MS.gene000732:intron | 30.0% |
| !! | TTTTTGTTGTACTTGGAATG+GGG | + | chr5.2:60002338-60002357 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTGCTTTTTCCTA+TGG | + | chr5.2:60001068-60001087 | None:intergenic | 30.0% |
| !!! | TAACGACGTTTTTTCATCTT+GGG | + | chr5.2:60001293-60001312 | None:intergenic | 30.0% |
| AAAAAACGTCGTTACCTAGA+AGG | - | chr5.2:60001299-60001318 | MS.gene000732:intron | 35.0% | |
| AAAAACGTCGTTACCTAGAA+GGG | - | chr5.2:60001300-60001319 | MS.gene000732:intron | 35.0% | |
| AATACTCGTCGTTTACTTGT+TGG | - | chr5.2:60003396-60003415 | MS.gene000732:CDS | 35.0% | |
| ACAACTTCGTTTGATGTTGT+TGG | + | chr5.2:60001133-60001152 | None:intergenic | 35.0% | |
| AGAATCTAAGAGAACATGGT+TGG | + | chr5.2:60001167-60001186 | None:intergenic | 35.0% | |
| ATAGGTCAAATATTGCAGGA+CGG | - | chr5.2:60002163-60002182 | MS.gene000732:intron | 35.0% | |
| ATCACGTAGGTCAAATATTG+TGG | + | chr5.2:60001908-60001927 | None:intergenic | 35.0% | |
| CAAATACCCAATTTAGCAAG+GGG | - | chr5.2:60003460-60003479 | MS.gene000732:CDS | 35.0% | |
| CACCATTAGAAAGAGAATGA+AGG | + | chr5.2:60002613-60002632 | None:intergenic | 35.0% | |
| CCCCATGTAAAAGTTTATAG+TGG | + | chr5.2:60002051-60002070 | None:intergenic | 35.0% | |
| CTTGAGAATCTAAGAGAACA+TGG | + | chr5.2:60001171-60001190 | None:intergenic | 35.0% | |
| GAAACCACCATCATCAAATT+TGG | - | chr5.2:60001414-60001433 | MS.gene000732:intron | 35.0% | |
| GAATCTAAGAGAACATGGTT+GGG | + | chr5.2:60001166-60001185 | None:intergenic | 35.0% | |
| GAGTTTCTTCAATCTCCATT+GGG | + | chr5.2:60003832-60003851 | None:intergenic | 35.0% | |
| GTCAAACATGCTATGTGAAA+AGG | - | chr5.2:60003259-60003278 | MS.gene000732:intron | 35.0% | |
| GTGATAAGACTAGACATGAT+AGG | + | chr5.2:60002647-60002666 | None:intergenic | 35.0% | |
| TCAAAGCCCAAATTTGATGA+TGG | + | chr5.2:60001424-60001443 | None:intergenic | 35.0% | |
| TCACGTAGGTCAAATATTGT+GGG | + | chr5.2:60001907-60001926 | None:intergenic | 35.0% | |
| TCTCAAGCAGTAAAACACTT+CGG | - | chr5.2:60001184-60001203 | MS.gene000732:intron | 35.0% | |
| TGAGCTCTTACTTTCTTGTA+GGG | - | chr5.2:60002804-60002823 | MS.gene000732:intron | 35.0% | |
| TGTTTGGTATCACATTGAGT+AGG | - | chr5.2:60003537-60003556 | MS.gene000732:CDS | 35.0% | |
| TTGAAATCCGCAACAAGAAA+AGG | + | chr5.2:60001865-60001884 | None:intergenic | 35.0% | |
| TTGAGCTCTTACTTTCTTGT+AGG | - | chr5.2:60002803-60002822 | MS.gene000732:intron | 35.0% | |
| ! | ATCTTTTCCTCATATTCTCG+TGG | - | chr5.2:60002290-60002309 | MS.gene000732:intron | 35.0% |
| ! | ATTTTGCCCCTTGCTAAATT+GGG | + | chr5.2:60003469-60003488 | None:intergenic | 35.0% |
| ! | CATCAAATTTGGGCTTTGAT+AGG | - | chr5.2:60001425-60001444 | MS.gene000732:intron | 35.0% |
| ! | CTATGTGAAAAGGATTTTGG+AGG | - | chr5.2:60003269-60003288 | MS.gene000732:intron | 35.0% |
| ! | TATTTTGCCCCTTGCTAAAT+TGG | + | chr5.2:60003470-60003489 | None:intergenic | 35.0% |
| ! | TTCCATCAACTTTTCCAACT+GGG | + | chr5.2:60001494-60001513 | None:intergenic | 35.0% |
| ! | TTGAGAAGGTCAAGTATTGT+GGG | - | chr5.2:60002121-60002140 | MS.gene000732:intron | 35.0% |
| ! | TTTGAGAAGGTCAAGTATTG+TGG | - | chr5.2:60002120-60002139 | MS.gene000732:intron | 35.0% |
| !! | AGTTCTTGATTTGGCTCTAA+GGG | + | chr5.2:60001223-60001242 | None:intergenic | 35.0% |
| !!! | AACGACGTTTTTTCATCTTG+GGG | + | chr5.2:60001292-60001311 | None:intergenic | 35.0% |
| !!! | GTAACGACGTTTTTTCATCT+TGG | + | chr5.2:60001294-60001313 | None:intergenic | 35.0% |
| AATAAGGAACGTGGATGCTA+AGG | - | chr5.2:60001336-60001355 | MS.gene000732:intron | 40.0% | |
| AGTAAAACACTTCGGGCTTA+GGG | - | chr5.2:60001192-60001211 | MS.gene000732:intron | 40.0% | |
| ATAAGGAACGTGGATGCTAA+GGG | - | chr5.2:60001337-60001356 | MS.gene000732:intron | 40.0% | |
| ATACTTATACATACCCCACG+AGG | + | chr5.2:60001625-60001644 | None:intergenic | 40.0% | |
| ATGAGTTTGTATATGGGTGG+CGG | - | chr5.2:60001550-60001569 | MS.gene000732:intron | 40.0% | |
| CTCAAGCAGTAAAACACTTC+GGG | - | chr5.2:60001185-60001204 | MS.gene000732:intron | 40.0% | |
| GAGCTCTTACTTTCTTGTAG+GGG | - | chr5.2:60002805-60002824 | MS.gene000732:intron | 40.0% | |
| GGAGTTTCTTCAATCTCCAT+TGG | + | chr5.2:60003833-60003852 | None:intergenic | 40.0% | |
| GTAGGTCAAATATTGTGGGA+CGG | + | chr5.2:60001903-60001922 | None:intergenic | 40.0% | |
| TCTGTGTGAAATGATCACGT+AGG | + | chr5.2:60001921-60001940 | None:intergenic | 40.0% | |
| TTCGTTGTGGCGTTTCATAA+TGG | - | chr5.2:60001794-60001813 | MS.gene000732:intron | 40.0% | |
| TTCTAGTGGAATAAGGAACG+TGG | - | chr5.2:60001327-60001346 | MS.gene000732:intron | 40.0% | |
| TTGGGCTTGAGTTCTTGATT+TGG | + | chr5.2:60001232-60001251 | None:intergenic | 40.0% | |
| ! | AACTTTTCCAACTGGGCTTT+AGG | + | chr5.2:60001487-60001506 | None:intergenic | 40.0% |
| ! | CTTCCATCAACTTTTCCAAC+TGG | + | chr5.2:60001495-60001514 | None:intergenic | 40.0% |
| !! | AAGCCCAAATTTGATGATGG+TGG | + | chr5.2:60001421-60001440 | None:intergenic | 40.0% |
| !! | AGAAAGTAATGATGGGTCTG+AGG | - | chr5.2:60001513-60001532 | MS.gene000732:intron | 40.0% |
| !! | GAGTTCTTGATTTGGCTCTA+AGG | + | chr5.2:60001224-60001243 | None:intergenic | 40.0% |
| AGCCCAGTTGGAAAAGTTGA+TGG | - | chr5.2:60001489-60001508 | MS.gene000732:intron | 45.0% | |
| AGTGGCTTGAAGTTTCGTTG+TGG | - | chr5.2:60001781-60001800 | MS.gene000732:intron | 45.0% | |
| ATTCTCGTGGCAATTGGCAA+AGG | - | chr5.2:60002303-60002322 | MS.gene000732:intron | 45.0% | |
| CAGTAAAACACTTCGGGCTT+AGG | - | chr5.2:60001191-60001210 | MS.gene000732:intron | 45.0% | |
| CCAATTGCCACGAGAATATG+AGG | + | chr5.2:60002300-60002319 | None:intergenic | 45.0% | |
| CCTCATATTCTCGTGGCAAT+TGG | - | chr5.2:60002297-60002316 | MS.gene000732:intron | 45.0% | |
| GACTTGCGTGAAATTGCATG+TGG | - | chr5.2:60001824-60001843 | MS.gene000732:intron | 45.0% | |
| GCTTTGATAGGCCCTTTGAT+GGG | - | chr5.2:60001437-60001456 | MS.gene000732:intron | 45.0% | |
| GGGTACGTTCTAGTGGAATA+AGG | - | chr5.2:60001320-60001339 | MS.gene000732:intron | 45.0% | |
| GTCAAATATTGCAGGACGGA+GGG | - | chr5.2:60002167-60002186 | MS.gene000732:intron | 45.0% | |
| TATTGAGGAGCTGCTTCAAC+AGG | + | chr5.2:60003854-60003873 | None:intergenic | 45.0% | |
| TCATCTTGGGGCTCAATCTT+AGG | + | chr5.2:60001280-60001299 | None:intergenic | 45.0% | |
| TGCATGTGGTTGCAAAGACA+GGG | - | chr5.2:60001838-60001857 | MS.gene000732:intron | 45.0% | |
| TTGCATGTGGTTGCAAAGAC+AGG | - | chr5.2:60001837-60001856 | MS.gene000732:intron | 45.0% | |
| ! | ACAGGGTCCTTTTCTTGTTG+CGG | - | chr5.2:60001855-60001874 | MS.gene000732:intron | 45.0% |
| ! | AGCATGACGGTGATGTTTTG+CGG | - | chr5.2:60001587-60001606 | MS.gene000732:intron | 45.0% |
| ! | TCGTCGTTTACTTGTTGGTC+TGG | - | chr5.2:60003401-60003420 | MS.gene000732:CDS | 45.0% |
| !! | ACGAGTGAGTTTTAGCCCAA+TGG | - | chr5.2:60003814-60003833 | MS.gene000732:CDS | 45.0% |
| !!! | ATAAAAAATAAATAAACTTT+TGG | - | chr5.2:60002260-60002279 | MS.gene000732:intron | 5.0% |
| AAGCCTCATCTTCACCCTCA+TGG | + | chr5.2:60001464-60001483 | None:intergenic | 50.0% | |
| ACCCTCATGGACCCATCAAA+GGG | + | chr5.2:60001451-60001470 | None:intergenic | 50.0% | |
| CCACTAGAACGTACCCTTCT+AGG | + | chr5.2:60001316-60001335 | None:intergenic | 50.0% | |
| GGTCAAATATTGCAGGACGG+AGG | - | chr5.2:60002166-60002185 | MS.gene000732:intron | 50.0% | |
| GGTCAAATATTGTGGGACGG+AGG | + | chr5.2:60001900-60001919 | None:intergenic | 50.0% | |
| TACATACCCCACGAGGCTTT+CGG | + | chr5.2:60001618-60001637 | None:intergenic | 50.0% | |
| ! | AGTTTGTATATGGGTGGCGG+TGG | - | chr5.2:60001553-60001572 | MS.gene000732:intron | 50.0% |
| ! | CCTAGAAGGGTACGTTCTAG+TGG | - | chr5.2:60001313-60001332 | MS.gene000732:intron | 50.0% |
| ! | GGCTTTGATAGGCCCTTTGA+TGG | - | chr5.2:60001436-60001455 | MS.gene000732:intron | 50.0% |
| !! | TAATGATGGGTCTGAGGTCG+CGG | - | chr5.2:60001519-60001538 | MS.gene000732:intron | 50.0% |
| CACCCTCATGGACCCATCAA+AGG | + | chr5.2:60001452-60001471 | None:intergenic | 55.0% | |
| GAGGCTTCCTAAAGCCCAGT+TGG | - | chr5.2:60001477-60001496 | MS.gene000732:intron | 55.0% | |
| GCTAAACCGAAAGCCTCGTG+GGG | - | chr5.2:60001609-60001628 | MS.gene000732:intron | 55.0% | |
| GGCTAAACCGAAAGCCTCGT+GGG | - | chr5.2:60001608-60001627 | MS.gene000732:intron | 55.0% | |
| GGTCCATGAGGGTGAAGATG+AGG | - | chr5.2:60001458-60001477 | MS.gene000732:intron | 55.0% | |
| ! | GCCCTTTGATGGGTCCATGA+GGG | - | chr5.2:60001447-60001466 | MS.gene000732:intron | 55.0% |
| CGGCTAAACCGAAAGCCTCG+TGG | - | chr5.2:60001607-60001626 | MS.gene000732:intron | 60.0% | |
| ! | GGCCCTTTGATGGGTCCATG+AGG | - | chr5.2:60001446-60001465 | MS.gene000732:intron | 60.0% |
| ! | TATGGGTGGCGGTGGTGATG+CGG | - | chr5.2:60001561-60001580 | MS.gene000732:intron | 60.0% |
| GGTGATGCGGCGGAGCATGA+CGG | - | chr5.2:60001574-60001593 | MS.gene000732:intron | 65.0% | |
| ! | GGGTGGCGGTGGTGATGCGG+CGG | - | chr5.2:60001564-60001583 | MS.gene000732:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 60001055 | 60003874 | 60001055 | ID=MS.gene000732 |
| chr5.2 | mRNA | 60001055 | 60003874 | 60001055 | ID=MS.gene000732.t1;Parent=MS.gene000732 |
| chr5.2 | exon | 60003329 | 60003874 | 60003329 | ID=MS.gene000732.t1.exon1;Parent=MS.gene000732.t1 |
| chr5.2 | CDS | 60003329 | 60003874 | 60003329 | ID=cds.MS.gene000732.t1;Parent=MS.gene000732.t1 |
| chr5.2 | exon | 60001055 | 60001117 | 60001055 | ID=MS.gene000732.t1.exon2;Parent=MS.gene000732.t1 |
| chr5.2 | CDS | 60001055 | 60001117 | 60001055 | ID=cds.MS.gene000732.t1;Parent=MS.gene000732.t1 |
| Gene Sequence |
| Protein sequence |
