AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001194

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001194.t1 MTR_6g051425 34.098 305 194 6 66 367 20 320 2.48e-49 177
MS.gene001194.t1 MTR_0402s0040 38.068 176 105 2 63 238 26 197 5.06e-30 125
MS.gene001194.t1 MTR_1g070355 31.224 237 157 5 68 304 79 309 6.46e-30 125
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 10 158 2.61e-28 114
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 10 158 2.64e-28 114
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 30 178 5.36e-28 114
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 30 178 5.42e-28 114
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 28 176 5.58e-28 114
MS.gene001194.t1 MTR_4g067290 44.156 154 74 5 24 170 70 218 7.63e-28 114
MS.gene001194.t1 MTR_4g035820 28.061 392 243 15 35 397 45 426 1.47e-27 119
MS.gene001194.t1 MTR_3g006370 52.778 108 48 2 62 169 49 153 1.66e-27 112
MS.gene001194.t1 MTR_7g446520 32.567 261 148 7 67 326 92 325 2.12e-27 114
MS.gene001194.t1 MTR_0558s0020 26.415 265 176 5 62 310 35 296 3.19e-26 110
MS.gene001194.t1 MTR_2g098920 54.128 109 45 3 62 170 79 182 1.49e-25 107
MS.gene001194.t1 MTR_2g098880 44.737 114 61 2 61 174 59 170 4.01e-25 105
MS.gene001194.t1 MTR_2g098880 44.737 114 61 2 61 174 71 182 5.85e-25 105
MS.gene001194.t1 MTR_7g446480 34.270 178 113 2 142 318 140 314 2.12e-24 105
MS.gene001194.t1 MTR_5g076070 26.718 262 181 6 38 298 31 282 6.82e-24 102
MS.gene001194.t1 MTR_7g446510 32.701 211 126 4 112 318 131 329 8.09e-24 103
MS.gene001194.t1 MTR_1g008290 34.459 148 89 4 117 263 4 144 8.42e-22 92.8
MS.gene001194.t1 MTR_8g446020 30.286 175 118 2 137 310 85 256 2.96e-21 94.4
MS.gene001194.t1 MTR_5g015480 41.129 124 70 2 63 186 56 176 1.73e-19 89.4
MS.gene001194.t1 MTR_6g090505 26.636 214 142 4 108 309 20 230 1.26e-18 89.0
MS.gene001194.t1 MTR_7g074790 31.638 177 98 2 60 236 7 160 2.16e-18 85.5
MS.gene001194.t1 MTR_1g083640 25.532 235 156 5 62 280 50 281 1.22e-17 84.7
MS.gene001194.t1 MTR_1g019850 30.357 168 104 3 32 199 42 196 2.11e-17 82.8
MS.gene001194.t1 MTR_2g070590 36.792 106 64 1 63 168 17 119 2.64e-16 76.3
MS.gene001194.t1 MTR_6g022070 24.519 208 143 3 364 562 1 203 7.24e-16 80.1
MS.gene001194.t1 MTR_1g013060 25.943 212 152 3 60 268 21 230 1.13e-15 77.4
MS.gene001194.t1 MTR_0853s0010 29.932 147 92 3 57 199 19 158 1.21e-15 75.9
MS.gene001194.t1 MTR_3g450850 25.357 280 184 7 37 298 14 286 1.93e-15 79.0
MS.gene001194.t1 MTR_5g039760 27.861 201 116 5 60 259 7 179 2.25e-15 75.5
MS.gene001194.t1 MTR_7g113010 35.537 121 61 2 63 183 457 560 1.17e-14 78.2
MS.gene001194.t1 MTR_6g017200 36.364 99 60 1 63 161 58 153 1.52e-14 72.4
MS.gene001194.t1 MTR_1g057920 38.710 93 54 1 63 155 34 123 4.67e-14 69.7
MS.gene001194.t1 MTR_6g022080 27.273 154 108 3 69 221 91 241 1.28e-13 72.0
MS.gene001194.t1 MTR_7g028855 30.244 205 131 4 9 208 66 263 1.90e-13 73.9
MS.gene001194.t1 MTR_2g101460 39.683 126 68 4 61 182 41 162 8.97e-13 68.6
MS.gene001194.t1 MTR_2g101460 40.164 122 65 4 61 178 51 168 1.26e-12 68.2
MS.gene001194.t1 MTR_8g465780 33.333 96 63 1 448 542 8 103 1.93e-11 63.9
MS.gene001194.t1 MTR_2g014100 24.651 215 144 5 50 248 33 245 4.82e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001194.t1 AT4G38180 70.581 809 196 8 1 789 2 788 0.0 1157
MS.gene001194.t1 AT2G27110 46.022 641 306 9 57 696 43 644 0.0 585
MS.gene001194.t1 AT2G27110 46.022 641 306 9 57 696 43 644 0.0 585
MS.gene001194.t1 AT4G38170 48.540 548 261 5 241 787 18 545 0.0 547
MS.gene001194.t1 AT2G27110 52.564 468 214 3 229 696 40 499 2.85e-176 523
MS.gene001194.t1 AT4G15090 35.928 668 412 9 50 715 38 691 4.29e-149 457
MS.gene001194.t1 AT4G15090 35.928 668 412 9 50 715 38 691 4.29e-149 457
MS.gene001194.t1 AT4G15090 35.928 668 412 9 50 715 38 691 4.29e-149 457
MS.gene001194.t1 AT4G15090 35.928 668 412 9 50 715 38 691 4.29e-149 457
MS.gene001194.t1 AT4G15090 35.928 668 412 9 50 715 38 691 4.29e-149 457
MS.gene001194.t1 AT3G22170 34.649 684 391 10 24 690 30 674 4.73e-142 439
MS.gene001194.t1 AT3G22170 34.649 684 391 10 24 690 30 674 4.73e-142 439
MS.gene001194.t1 AT1G76320 36.783 628 362 12 67 688 1 599 1.41e-132 409
MS.gene001194.t1 AT5G18960 36.984 630 338 12 62 687 210 784 4.00e-132 412
MS.gene001194.t1 AT5G18960 39.837 123 48 4 46 168 35 131 7.37e-17 85.9
MS.gene001194.t1 AT5G18960 36.984 630 338 12 62 687 210 784 4.00e-132 412
MS.gene001194.t1 AT5G18960 39.837 123 48 4 46 168 35 131 7.37e-17 85.9
MS.gene001194.t1 AT1G76320 36.783 628 362 12 67 688 1 599 7.99e-132 409
MS.gene001194.t1 AT1G76320 36.783 628 362 12 67 688 1 599 7.99e-132 409
MS.gene001194.t1 AT1G76320 36.783 628 362 12 67 688 1 599 8.23e-132 409
MS.gene001194.t1 AT3G06250 35.940 665 350 15 40 687 155 760 4.12e-131 409
MS.gene001194.t1 AT3G06250 41.667 108 46 3 61 168 26 116 1.10e-16 85.1
MS.gene001194.t1 AT3G06250 35.940 665 350 15 40 687 155 760 4.12e-131 409
MS.gene001194.t1 AT3G06250 41.667 108 46 3 61 168 26 116 1.10e-16 85.1
MS.gene001194.t1 AT3G06250 35.940 665 350 15 40 687 155 760 4.12e-131 409
MS.gene001194.t1 AT3G06250 41.667 108 46 3 61 168 26 116 1.10e-16 85.1
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 18 613 1.37e-117 373
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 18 613 1.37e-117 373
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 18 613 1.87e-117 372
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 32 627 2.89e-117 372
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 18 613 4.95e-117 372
MS.gene001194.t1 AT4G19990 34.992 643 355 15 60 686 18 613 4.95e-117 372
MS.gene001194.t1 AT2G32250 32.980 661 387 9 25 685 1 605 1.55e-114 365
MS.gene001194.t1 AT2G32250 33.434 661 384 9 25 685 1 605 3.66e-114 365
MS.gene001194.t1 AT2G32250 33.434 661 384 9 25 685 1 605 3.66e-114 365
MS.gene001194.t1 AT2G32250 32.980 661 387 9 25 685 1 605 3.80e-114 365
MS.gene001194.t1 AT2G32250 32.980 661 387 9 25 685 1 605 3.80e-114 365
MS.gene001194.t1 AT2G32250 32.980 661 387 9 25 685 1 605 3.80e-114 365
MS.gene001194.t1 AT2G32250 33.441 619 357 8 67 685 1 564 1.67e-112 360
MS.gene001194.t1 AT2G32250 33.441 619 357 8 67 685 1 564 1.78e-112 360
MS.gene001194.t1 AT4G19990 33.611 601 336 15 102 686 3 556 3.35e-102 330
MS.gene001194.t1 AT1G52520 31.019 677 420 19 35 694 56 702 3.42e-96 315
MS.gene001194.t1 AT1G80010 30.335 656 405 17 63 693 95 723 1.66e-90 300
MS.gene001194.t1 AT1G10240 27.937 698 463 17 18 705 3 670 1.92e-83 280
MS.gene001194.t1 AT1G10240 27.937 698 463 17 18 705 3 670 1.92e-83 280
MS.gene001194.t1 AT5G28530 31.229 586 362 15 63 627 55 620 2.20e-74 256
MS.gene001194.t1 AT5G28530 31.229 586 358 16 63 627 55 616 4.58e-74 254
MS.gene001194.t1 AT5G28530 31.229 586 358 16 63 627 55 616 4.58e-74 254
MS.gene001194.t1 AT5G28530 28.348 575 330 16 63 627 55 557 2.70e-52 193
MS.gene001194.t1 AT5G28530 28.348 575 326 17 63 627 55 553 5.06e-52 192
MS.gene001194.t1 AT3G59470 43.429 175 78 5 12 170 3 172 6.32e-30 119
MS.gene001194.t1 AT3G59470 43.429 175 78 5 12 170 3 172 6.32e-30 119
MS.gene001194.t1 AT3G59470 43.429 175 78 5 12 170 15 184 7.51e-30 119
MS.gene001194.t1 AT2G43280 45.455 143 68 4 37 177 1 135 9.31e-29 114
MS.gene001194.t1 AT3G07500 47.368 133 65 3 39 170 8 136 1.62e-27 111
MS.gene001194.t1 AT2G43280 48.039 102 48 3 78 177 2 100 4.35e-21 91.7
MS.gene001194.t1 AT4G12850 42.982 114 55 3 58 168 3 109 1.03e-20 89.4
MS.gene001194.t1 AT4G12850 42.982 114 55 3 58 168 3 109 2.54e-20 88.6
MS.gene001194.t1 AT4G12850 42.982 114 55 3 58 168 3 109 2.75e-20 89.7

Find 186 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCCCACCGTCAAATTTC+TGG 0.077594 5.1:-80956238 MS.gene001194:CDS
CAAAGAAGAAATTAGGATTT+TGG 0.123283 5.1:+80956011 None:intergenic
ACCTTTATCAACAAATTTAA+AGG 0.150987 5.1:+80954794 None:intergenic
TCATGTATATACTTACTATT+TGG 0.183092 5.1:-80954856 MS.gene001194:CDS
TTACCCTTTGCTCCCTTTAC+TGG 0.199899 5.1:-80955851 MS.gene001194:CDS
ACATATCATGTAGCTAAATT+TGG 0.219908 5.1:-80955089 MS.gene001194:CDS
CATGGTCAACCTGTTCTCTT+TGG 0.223496 5.1:-80955818 MS.gene001194:CDS
TGAACAGCAAAGAAGAAATT+AGG 0.236435 5.1:+80956004 None:intergenic
CCTTCTTTGCAGACATATTC+TGG 0.237940 5.1:-80954982 MS.gene001194:CDS
AGAAGAAGAAGATGATGATT+TGG 0.241377 5.1:-80956659 MS.gene001194:CDS
TTTGCAACATCATAAGTTTC+AGG 0.247657 5.1:+80954762 None:intergenic
GCCTTTAAATTTGTTGATAA+AGG 0.252707 5.1:-80954795 MS.gene001194:CDS
TGAAACTCGGCTTCAAAGTT+TGG 0.256048 5.1:+80955572 None:intergenic
CAGCCTGTAGAGTGTCAATT+AGG 0.261268 5.1:+80956203 None:intergenic
TTGCAAACTGACGTTGCTTT+TGG 0.278488 5.1:+80954890 None:intergenic
CACTCTACAGGCTGCTGGTA+TGG 0.289290 5.1:-80956194 MS.gene001194:CDS
TAATATCTTGCAGGATGATA+TGG 0.290977 5.1:-80951499 MS.gene001194:intron
AATTTCTTCTTTGCTGTTCA+AGG 0.292471 5.1:-80956001 MS.gene001194:CDS
TCTGCCAAGTGGATCGTATC+TGG 0.294800 5.1:-80956316 MS.gene001194:CDS
GTAGAATTTGATATTGGTTT+GGG 0.307344 5.1:-80956754 MS.gene001194:CDS
GGTAGAATTTGATATTGGTT+TGG 0.326592 5.1:-80956755 MS.gene001194:CDS
CTTAAAGAACTGATTTAAAC+TGG 0.329541 5.1:+80955325 None:intergenic
GCGTTTGATCTCTCTGTCTT+TGG 0.332960 5.1:+80956399 None:intergenic
AAGCAATACATTCCGCTTGC+AGG 0.336808 5.1:-80955454 MS.gene001194:CDS
TTGACGAATTTGAGTCTTGC+TGG 0.341126 5.1:-80955523 MS.gene001194:CDS
GTGTAATTCAACCTTGCCTT+GGG 0.343488 5.1:+80955929 None:intergenic
CTCCCCATCATCCTCAGCTT+TGG 0.350878 5.1:+80955118 None:intergenic
GAAGAAGAAGATGATGATTT+GGG 0.351944 5.1:-80956658 MS.gene001194:CDS
TACATTCCGCTTGCAGGCAC+TGG 0.358152 5.1:-80955448 MS.gene001194:CDS
AGCATGAACTCTTACTTTGA+TGG 0.369267 5.1:-80955365 MS.gene001194:CDS
CAGAAACGGTAACGAGTGTC+TGG 0.373000 5.1:+80955653 None:intergenic
GGAGATGGGGTCCTCAATAC+TGG 0.377437 5.1:+80955230 None:intergenic
AAACTGAAGCTTCCTTTGTC+TGG 0.378773 5.1:-80955775 MS.gene001194:CDS
GCTTTACTGAGGTTGATTGT+AGG 0.379314 5.1:-80956114 MS.gene001194:CDS
ACATGGCTTACCGCCATGTC+TGG 0.388564 5.1:-80955743 MS.gene001194:CDS
ACACTACTTACCGCTCTAAC+AGG 0.393642 5.1:-80955880 MS.gene001194:CDS
GAAACTCGGCTTCAAAGTTT+GGG 0.402169 5.1:+80955573 None:intergenic
CGGCTTCAAAGTTTGGGAAC+TGG 0.404355 5.1:+80955579 None:intergenic
AGAATCATGATCAGTGGTTA+TGG 0.407548 5.1:+80955706 None:intergenic
TCTGCACTCATCAAAGAGTA+TGG 0.412149 5.1:-80956154 MS.gene001194:CDS
GGTTGGCACGCTAACATTCA+TGG 0.415317 5.1:-80955144 MS.gene001194:CDS
AGCCTGTAGAGTGTCAATTA+GGG 0.418252 5.1:+80956204 None:intergenic
GCTTGCCTCTCCATCGGAGA+TGG 0.422404 5.1:+80955215 None:intergenic
CTTGCCTCTCCATCGGAGAT+GGG 0.427432 5.1:+80955216 None:intergenic
AGGTTCCAGATCTCCGGCCT+CGG 0.431500 5.1:+80956603 None:intergenic
TGGTTTGGGAGGAGAATATG+AGG 0.434179 5.1:-80956740 MS.gene001194:CDS
ATGAGCTTGAGTGTGCAAAT+AGG 0.437500 5.1:-80951452 MS.gene001194:CDS
GGCCTGAAAACTCAAACATT+TGG 0.440126 5.1:+80955003 None:intergenic
GAGGTGGTAGAATTTGATAT+TGG 0.442215 5.1:-80956760 MS.gene001194:CDS
CCATCAGCAATGGGAAGGTT+AGG 0.443830 5.1:-80954677 MS.gene001194:CDS
CGAAGGCAGTGAACCTGATC+GGG 0.445748 5.1:+80956259 None:intergenic
CCAGAATATGTCTGCAAAGA+AGG 0.449302 5.1:+80954982 None:intergenic
CCAACCCTTGTGACTGTTCG+TGG 0.450668 5.1:+80956376 None:intergenic
CGAACTTGTTCCACCCGATC+AGG 0.450679 5.1:-80956272 MS.gene001194:CDS
TGAGATGATGGACGAGGATG+AGG 0.456458 5.1:-80956701 MS.gene001194:CDS
CACTCGATTCCAAGAGGAGT+TGG 0.457309 5.1:-80955165 MS.gene001194:CDS
TTGGGAGAAAGCAGCGGCAG+CGG 0.460216 5.1:-80956640 MS.gene001194:CDS
TAATTACACTAGTGGCTGTC+AGG 0.463053 5.1:-80954625 MS.gene001194:CDS
ACTCTACAGGCTGCTGGTAT+GGG 0.465336 5.1:-80956193 MS.gene001194:CDS
CTCGTTACCGTTTCTGCAAG+TGG 0.468659 5.1:-80955646 MS.gene001194:CDS
GCGTGCCAACCAACTCCTCT+TGG 0.469006 5.1:+80955156 None:intergenic
TTGCAACATCATAAGTTTCA+GGG 0.472255 5.1:+80954763 None:intergenic
GGCTGTCAGGATGAAAGCTT+GGG 0.472435 5.1:-80954612 MS.gene001194:CDS
AATGTGTCTCGCAAATATAC+AGG 0.473103 5.1:+80955422 None:intergenic
GCATCCAAAGCTGAGGATGA+TGG 0.473156 5.1:-80955122 MS.gene001194:CDS
TCTGGAACCTTCTGAGGGTA+TGG 0.473420 5.1:-80956590 MS.gene001194:CDS
TGGCTGTCAGGATGAAAGCT+TGG 0.476969 5.1:-80954613 MS.gene001194:CDS
AGATATGCCACTTGCAGAAA+CGG 0.478647 5.1:+80955639 None:intergenic
AAAGCACAACCAAAGAGAAC+AGG 0.481412 5.1:+80955809 None:intergenic
TTGCAGATCCAGAAATTTGA+CGG 0.482877 5.1:+80956230 None:intergenic
CATCCAAAGCTGAGGATGAT+GGG 0.487357 5.1:-80955121 MS.gene001194:CDS
CCTAACCTTCCCATTGCTGA+TGG 0.492796 5.1:+80954677 None:intergenic
TATAATGAGATGGAAGAGTA+AGG 0.493011 5.1:+80954937 None:intergenic
TGATGGTTTACACCAGTAAA+GGG 0.493735 5.1:+80955839 None:intergenic
CGGAGATCTGGAACCTTCTG+AGG 0.494898 5.1:-80956596 MS.gene001194:CDS
TGAATACTTTGCCAGTATTG+AGG 0.495207 5.1:-80955241 MS.gene001194:CDS
CGAGTCTGAAGAGGCTGCTA+AGG 0.500073 5.1:-80956563 MS.gene001194:CDS
ATGATCTCAGGGACAATGAA+TGG 0.501996 5.1:-80955481 MS.gene001194:CDS
GGTTCCAGATCTCCGGCCTC+GGG 0.504308 5.1:+80956604 None:intergenic
AATTCCTATGCTCGTCGTGT+TGG 0.505166 5.1:-80956532 MS.gene001194:CDS
AACCCTAATTGACACTCTAC+AGG 0.506142 5.1:-80956206 MS.gene001194:CDS
GAATTTGATATTGGTTTGGG+AGG 0.506640 5.1:-80956751 MS.gene001194:CDS
TAAGCATATCACGAAACTTA+CGG 0.506729 5.1:-80951475 MS.gene001194:CDS
ATGATGGTTTACACCAGTAA+AGG 0.513575 5.1:+80955838 None:intergenic
AGTGTAATTCAACCTTGCCT+TGG 0.518295 5.1:+80955928 None:intergenic
CTCATTATATACTCAAACGC+TGG 0.519018 5.1:-80954923 MS.gene001194:CDS
AGCCCAGAAAACATTGGTGA+TGG 0.521427 5.1:+80955955 None:intergenic
AAATGTGAGACAACTTCTCC+TGG 0.528603 5.1:+80955606 None:intergenic
GGAGAACTCCCATCAGCAAT+GGG 0.531715 5.1:-80954686 MS.gene001194:CDS
GTTAGAGTTGTCAGTAAAGG+TGG 0.534829 5.1:-80951370 MS.gene001194:CDS
AGAGAACAGGTTGACCATGA+TGG 0.535460 5.1:+80955822 None:intergenic
CTCAGAAGGTTCCAGATCTC+CGG 0.537315 5.1:+80956597 None:intergenic
GAAACCAACACGACGAGCAT+AGG 0.538449 5.1:+80956528 None:intergenic
ACGAAGGCAGTGAACCTGAT+CGG 0.539597 5.1:+80956258 None:intergenic
TATGGTGGTATCAGCAAGGT+TGG 0.539841 5.1:-80956136 MS.gene001194:CDS
CAAGTTAGAGTTGTCAGTAA+AGG 0.539938 5.1:-80951373 MS.gene001194:CDS
TCTGGGCTGACCCCAAGGCA+AGG 0.540324 5.1:-80955940 MS.gene001194:CDS
TCTCGTCGTTCTCGCCGCGA+CGG 0.544434 5.1:-80956487 MS.gene001194:CDS
GGGAGAACTCCCATCAGCAA+TGG 0.547438 5.1:-80954687 MS.gene001194:CDS
AATCGCCATAAAAGTTTACA+AGG 0.550036 5.1:-80956076 MS.gene001194:CDS
GCCGCCGCATATTGAGATGA+TGG 0.551096 5.1:-80956713 MS.gene001194:CDS
ACACCAGTAAAGGGAGCAAA+GGG 0.551736 5.1:+80955848 None:intergenic
TGATCAGTGGTTATGGAGAG+TGG 0.552554 5.1:+80955713 None:intergenic
ATTGACACTCTACAGGCTGC+TGG 0.555898 5.1:-80956199 MS.gene001194:CDS
GTTAACACATTTGTGAAACT+CGG 0.558202 5.1:+80955559 None:intergenic
TCGGATGCTTGCCTCTCCAT+CGG 0.558570 5.1:+80955209 None:intergenic
GCGCAGGTAATGCGAAAGGA+GGG 0.559887 5.1:-80954708 MS.gene001194:CDS
GATCAGTGGTTATGGAGAGT+GGG 0.560314 5.1:+80955714 None:intergenic
GATGATGGACGAGGATGAGG+AGG 0.560621 5.1:-80956698 MS.gene001194:CDS
GCTATCACTTCGCTGAGTGA+TGG 0.562682 5.1:+80955385 None:intergenic
CAATTCGTCTGTGCTAAGGA+AGG 0.563839 5.1:-80956448 MS.gene001194:CDS
CGATTCCAAGAGGAGTTGGT+TGG 0.567024 5.1:-80955161 MS.gene001194:CDS
GAGACAATTCGTCTGTGCTA+AGG 0.568808 5.1:-80956452 MS.gene001194:CDS
GCATATCTTTAAGCAATGCC+AGG 0.569808 5.1:-80955624 MS.gene001194:CDS
TACACCAGTAAAGGGAGCAA+AGG 0.570161 5.1:+80955847 None:intergenic
CTAACCTTCCCATTGCTGAT+GGG 0.576542 5.1:+80954678 None:intergenic
ATAGGAAGTGTGAAATGTAC+CGG 0.577419 5.1:-80951434 MS.gene001194:CDS
GCCCAGAAAACATTGGTGAT+GGG 0.579481 5.1:+80955956 None:intergenic
TGCACGATTCTTCTGCCAAG+TGG 0.580316 5.1:-80956327 MS.gene001194:CDS
ACATTCCGCTTGCAGGCACT+GGG 0.581089 5.1:-80955447 MS.gene001194:CDS
ATTGAGGACCCCATCTCCGA+TGG 0.581233 5.1:-80955225 MS.gene001194:CDS
CCACGAACAGTCACAAGGGT+TGG 0.582221 5.1:-80956376 MS.gene001194:CDS
ATCATATCTGTCTAAAAGTG+TGG 0.585384 5.1:+80955499 None:intergenic
TTTACTGGTGTAAACCATCA+TGG 0.586662 5.1:-80955836 MS.gene001194:CDS
TGCAACATCATAAGTTTCAG+GGG 0.590648 5.1:+80954764 None:intergenic
AATTCGTCTGTGCTAAGGAA+GGG 0.592756 5.1:-80956447 MS.gene001194:CDS
ATCAGTGGTTATGGAGAGTG+GGG 0.594819 5.1:+80955715 None:intergenic
CTTCAAAGTTTGGGAACTGG+AGG 0.598863 5.1:+80955582 None:intergenic
AGATCCAGAAATTTGACGGT+GGG 0.599329 5.1:+80956234 None:intergenic
AGATGGAAGAGTAAGGACAT+TGG 0.600676 5.1:+80954944 None:intergenic
AAATTTGACGGTGGGAACGA+AGG 0.600886 5.1:+80956242 None:intergenic
CGTTTGAGTATATAATGAGA+TGG 0.602082 5.1:+80954927 None:intergenic
CGCAGGTAATGCGAAAGGAG+GGG 0.602168 5.1:-80954707 MS.gene001194:CDS
AACTCCCATCAGCAATGGGA+AGG 0.604290 5.1:-80954682 MS.gene001194:CDS
AAACAGAGAGCAAGTTAGAC+CGG 0.606350 5.1:+80951415 None:intergenic
CAGATCCAGAAATTTGACGG+TGG 0.607165 5.1:+80956233 None:intergenic
CAACCCTTGTGACTGTTCGT+GGG 0.608141 5.1:+80956377 None:intergenic
TGCGCAGGTAATGCGAAAGG+AGG 0.609788 5.1:-80954709 MS.gene001194:CDS
TTGCCTCTCCATCGGAGATG+GGG 0.612305 5.1:+80955217 None:intergenic
TGTGGTTTGGATGGAGAACG+AGG 0.614308 5.1:-80956779 None:intergenic
TTTAGACAGATATGATCTCA+GGG 0.617719 5.1:-80955492 MS.gene001194:CDS
AACGCCCACGAACAGTCACA+AGG 0.617810 5.1:-80956381 MS.gene001194:CDS
AACGACGAGAAGAACTGACT+CGG 0.618808 5.1:+80956500 None:intergenic
AATCATGCTAATTACACTAG+TGG 0.620695 5.1:-80954633 MS.gene001194:CDS
ATCCAAAGCTGAGGATGATG+GGG 0.622295 5.1:-80955120 MS.gene001194:CDS
ACGACGAGAAGAACTGACTC+GGG 0.622470 5.1:+80956501 None:intergenic
TATGGAATTCGAGTCTGAAG+AGG 0.624053 5.1:-80956572 MS.gene001194:CDS
CTTGGGAGAGCATATGAATG+AGG 0.624492 5.1:-80954595 MS.gene001194:intron
CAAATTTAAAGGCTTCATGT+CGG 0.625446 5.1:+80954805 None:intergenic
CAGCAAGGTTGGCTTTACTG+AGG 0.625913 5.1:-80956125 MS.gene001194:CDS
CAGTGGTTATGGAGAGTGGG+GGG 0.627461 5.1:+80955717 None:intergenic
TGTGTTGAAAAGCCAGACAA+AGG 0.628839 5.1:+80955763 None:intergenic
TCGAATTCCATACCCTCAGA+AGG 0.628976 5.1:+80956583 None:intergenic
GGACCCCATCTCCGATGGAG+AGG 0.629360 5.1:-80955220 MS.gene001194:CDS
ATTAAGATAAGCATGAAAGA+CGG 0.631649 5.1:-80951342 MS.gene001194:CDS
AGGCAGTGAACCTGATCGGG+TGG 0.632274 5.1:+80956262 None:intergenic
AGGTACCCAGTGCCTGCAAG+CGG 0.638903 5.1:+80955442 None:intergenic
TTTGGGAGGAGAATATGAGG+AGG 0.639911 5.1:-80956737 MS.gene001194:CDS
CAAAGCTGAGGATGATGGGG+AGG 0.640907 5.1:-80955117 MS.gene001194:CDS
GGGGTCAGCCCAGAAAACAT+TGG 0.643984 5.1:+80955949 None:intergenic
GGAGATCTGGAACCTTCTGA+GGG 0.646337 5.1:-80956595 MS.gene001194:CDS
TGGGAATACTTGCATTATAG+CGG 0.646366 5.1:+80955673 None:intergenic
GCATATTGAGATGATGGACG+AGG 0.650585 5.1:-80956707 MS.gene001194:CDS
TGAAACTTATGATGTTGCAA+AGG 0.650987 5.1:-80954760 MS.gene001194:CDS
AGAAACGGTAACGAGTGTCT+GGG 0.652405 5.1:+80955654 None:intergenic
AGCATGAAAGACGGCCTCTG+AGG 0.655501 5.1:-80951333 None:intergenic
TTGATTGTAGGAATTACATG+AGG 0.657971 5.1:-80956102 MS.gene001194:CDS
AGTTGCGCAGGTAATGCGAA+AGG 0.657991 5.1:-80954712 MS.gene001194:CDS
TCATGTAGCTAAATTTGGAG+AGG 0.661413 5.1:-80955084 MS.gene001194:CDS
AATGACAGAATCATGATCAG+TGG 0.665664 5.1:+80955700 None:intergenic
ATTCATGGCATCCAAAGCTG+AGG 0.668434 5.1:-80955129 MS.gene001194:CDS
GAAGCCAGATACGATCCACT+TGG 0.669193 5.1:+80956312 None:intergenic
TCGTCCATCATCTCAATATG+CGG 0.670750 5.1:+80956709 None:intergenic
TCAAGGTGATCTTGATGACG+AGG 0.673752 5.1:-80955984 MS.gene001194:CDS
AGAGTATGGTGGTATCAGCA+AGG 0.675333 5.1:-80956140 MS.gene001194:CDS
TCCATCATCTCAATATGCGG+CGG 0.677985 5.1:+80956712 None:intergenic
GTAATCGATACCTGTTAGAG+CGG 0.683465 5.1:+80955870 None:intergenic
GCACTCATCAAAGAGTATGG+TGG 0.683994 5.1:-80956151 MS.gene001194:CDS
CAATGAGAAAGAAGTAAGAG+CGG 0.684122 5.1:-80955276 MS.gene001194:CDS
GATGATTTGGGAGAAAGCAG+CGG 0.686560 5.1:-80956646 MS.gene001194:CDS
TGTAATTCAACCTTGCCTTG+GGG 0.693919 5.1:+80955930 None:intergenic
TCAGTGGTTATGGAGAGTGG+GGG 0.699327 5.1:+80955716 None:intergenic
ACGCCCACGAACAGTCACAA+GGG 0.715179 5.1:-80956380 MS.gene001194:CDS
GGTTTGGATGGAGAACGAGG+TGG 0.749123 5.1:-80956776 None:intergenic
TCTGAATGATAGCTCCGTCG+CGG 0.754566 5.1:+80956473 None:intergenic
AGTGCAGACATAATTCTGCG+AGG 0.756220 5.1:+80956169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCATTAGAAAAAAAAT+AGG + chr5.1:80956142-80956161 None:intergenic 10.0%
!! AAATCATTAGAAAAAAAATA+GGG + chr5.1:80956141-80956160 None:intergenic 10.0%
!! AATAATTTATTTACATCAAT+TGG - chr5.1:80954780-80954799 MS.gene001194:CDS 10.0%
!! AATGTTGAATAATAATGATA+TGG - chr5.1:80956368-80956387 MS.gene001194:CDS 15.0%
!! TATGATGATTATATATTAGT+AGG + chr5.1:80954452-80954471 None:intergenic 15.0%
!!! ACATTTTGTGTTTTAATATT+GGG - chr5.1:80955676-80955695 MS.gene001194:CDS 15.0%
!!! ATATGGTTTTGAATTAATTA+AGG - chr5.1:80955527-80955546 MS.gene001194:CDS 15.0%
!!! ATTTTATTTGTACATATTCA+GGG - chr5.1:80954658-80954677 MS.gene001194:CDS 15.0%
!!! TTTTGTCTAATAGATTATAT+CGG - chr5.1:80956513-80956532 MS.gene001194:CDS 15.0%
!! AACAATTAGAAAAGATTTAG+AGG - chr5.1:80953912-80953931 MS.gene001194:intron 20.0%
!! ACCTTTATCAACAAATTTAA+AGG + chr5.1:80953313-80953332 None:intergenic 20.0%
!! ATTGTATCACAATCAATATT+TGG + chr5.1:80954746-80954765 None:intergenic 20.0%
!! TAAGAAAATAAATCAGATTG+AGG + chr5.1:80956049-80956068 None:intergenic 20.0%
!! TAAGGAATTTATCTTTCAAA+AGG + chr5.1:80954983-80955002 None:intergenic 20.0%
!! TCATGTATATACTTACTATT+TGG - chr5.1:80953248-80953267 MS.gene001194:intron 20.0%
!! TTAATTTAATACCCATTGAT+TGG - chr5.1:80956228-80956247 MS.gene001194:CDS 20.0%
!!! AAAGAAGAAATTAGGATTTT+GGG + chr5.1:80952095-80952114 None:intergenic 20.0%
!!! AATCTGATTTATTTTCTTAC+TGG - chr5.1:80956050-80956069 MS.gene001194:CDS 20.0%
!!! AATGTTGTTAATGATGTTTT+TGG + chr5.1:80955876-80955895 None:intergenic 20.0%
!!! ATCTGATTTATTTTCTTACT+GGG - chr5.1:80956051-80956070 MS.gene001194:CDS 20.0%
!!! CACATTTTGTGTTTTAATAT+TGG - chr5.1:80955675-80955694 MS.gene001194:CDS 20.0%
!!! CATTTTATTTGTACATATTC+AGG - chr5.1:80954657-80954676 MS.gene001194:CDS 20.0%
!!! TCTTTTCTAATTGTTTTCTT+AGG + chr5.1:80953907-80953926 None:intergenic 20.0%
!!! TTAGTTTTCTTTTTTCTCTT+AGG - chr5.1:80955425-80955444 MS.gene001194:CDS 20.0%
!!! TTTTATTTGTACATATTCAG+GGG - chr5.1:80954659-80954678 MS.gene001194:CDS 20.0%
! AATAATGATATGGAAAGAGA+GGG - chr5.1:80956378-80956397 MS.gene001194:CDS 25.0%
! ACATATCATGTAGCTAAATT+TGG - chr5.1:80953015-80953034 MS.gene001194:intron 25.0%
! ATTAAGATAAGCATGAAAGA+CGG - chr5.1:80956762-80956781 MS.gene001194:CDS 25.0%
! CTTAATATCTAATATCTTGC+AGG - chr5.1:80956596-80956615 MS.gene001194:CDS 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr5.1:80953952-80953971 None:intergenic 25.0%
! TAATAATGATATGGAAAGAG+AGG - chr5.1:80956377-80956396 MS.gene001194:CDS 25.0%
! TACTCTATGATACCTTTATA+GGG - chr5.1:80956165-80956184 MS.gene001194:CDS 25.0%
! TTACTCTATGATACCTTTAT+AGG - chr5.1:80956164-80956183 MS.gene001194:CDS 25.0%
!! AATTTTTCTTGTGTAAAGCT+CGG + chr5.1:80952917-80952936 None:intergenic 25.0%
!! ATATTTTTCTTTATGCCCTA+AGG + chr5.1:80955596-80955615 None:intergenic 25.0%
!! CAAAGAAGAAATTAGGATTT+TGG + chr5.1:80952096-80952115 None:intergenic 25.0%
!! CTTAAAGAACTGATTTAAAC+TGG + chr5.1:80952782-80952801 None:intergenic 25.0%
!! TATTTTTCTTTATGCCCTAA+GGG + chr5.1:80955595-80955614 None:intergenic 25.0%
!! TTTCATTGATTGAACAAAGT+TGG - chr5.1:80954957-80954976 MS.gene001194:CDS 25.0%
!! TTTTCTACCAACTTTACTAT+AGG + chr5.1:80953781-80953800 None:intergenic 25.0%
!!! AGGTTGAATTACACTTTTTT+CGG - chr5.1:80952184-80952203 MS.gene001194:intron 25.0%
!!! ATATTTGTGAAAGCACTTTT+TGG + chr5.1:80956319-80956338 None:intergenic 25.0%
!!! GCCTTTAAATTTGTTGATAA+AGG - chr5.1:80953309-80953328 MS.gene001194:intron 25.0%
!!! GTAGAATTTGATATTGGTTT+GGG - chr5.1:80951350-80951369 MS.gene001194:CDS 25.0%
!!! TAGTAAAGTTGGTAGAAAAT+AGG - chr5.1:80953782-80953801 MS.gene001194:intron 25.0%
!!! TCATCTTTTAAGAACCAAAT+TGG - chr5.1:80954894-80954913 MS.gene001194:CDS 25.0%
AATCATGCTAATTACACTAG+TGG - chr5.1:80953471-80953490 MS.gene001194:intron 30.0%
AATCGCCATAAAAGTTTACA+AGG - chr5.1:80952028-80952047 MS.gene001194:intron 30.0%
ACAAGACTCATAACTCAAAA+TGG + chr5.1:80954526-80954545 None:intergenic 30.0%
ACATCAAAATGTGAAGTTCT+TGG + chr5.1:80955356-80955375 None:intergenic 30.0%
AGAAGAAGAAGATGATGATT+TGG - chr5.1:80951445-80951464 MS.gene001194:CDS 30.0%
ATAGCACTCAACAAAAATGA+AGG + chr5.1:80954402-80954421 None:intergenic 30.0%
ATCATATCTGTCTAAAAGTG+TGG + chr5.1:80952608-80952627 None:intergenic 30.0%
CAAATTTAAAGGCTTCATGT+CGG + chr5.1:80953302-80953321 None:intergenic 30.0%
CAACTTTATTGGAAGAATGA+TGG + chr5.1:80954180-80954199 None:intergenic 30.0%
CAGTTAGAACCTTAATGTTT+GGG - chr5.1:80955195-80955214 MS.gene001194:CDS 30.0%
CCAAACTATTAAAAGAGGTT+TGG + chr5.1:80956004-80956023 None:intergenic 30.0%
CGTTTGAGTATATAATGAGA+TGG + chr5.1:80953180-80953199 None:intergenic 30.0%
GAAGAAGAAGATGATGATTT+GGG - chr5.1:80951446-80951465 MS.gene001194:CDS 30.0%
GATCGAACTTATCATCAATT+AGG - chr5.1:80954846-80954865 MS.gene001194:CDS 30.0%
GGTTAAAAACAACCGTAAAA+TGG + chr5.1:80953543-80953562 None:intergenic 30.0%
GTTAACACATTTGTGAAACT+CGG + chr5.1:80952548-80952567 None:intergenic 30.0%
TAAGCATATCACGAAACTTA+CGG - chr5.1:80956629-80956648 MS.gene001194:CDS 30.0%
TAATATCTTGCAGGATGATA+TGG - chr5.1:80956605-80956624 MS.gene001194:CDS 30.0%
TATAATGAGATGGAAGAGTA+AGG + chr5.1:80953170-80953189 None:intergenic 30.0%
TATATCTCTATTCTCTAGCA+TGG + chr5.1:80953620-80953639 None:intergenic 30.0%
TCAAGCCAAACTATTAAAAG+AGG + chr5.1:80956009-80956028 None:intergenic 30.0%
TCAGACAATATCCAATCAAT+GGG + chr5.1:80956242-80956261 None:intergenic 30.0%
TCAGTTAGAACCTTAATGTT+TGG - chr5.1:80955194-80955213 MS.gene001194:CDS 30.0%
TGAAACTTATGATGTTGCAA+AGG - chr5.1:80953344-80953363 MS.gene001194:intron 30.0%
TGAACAGCAAAGAAGAAATT+AGG + chr5.1:80952103-80952122 None:intergenic 30.0%
TGGAAAGAATAACCCTATAA+AGG + chr5.1:80956180-80956199 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr5.1:80953849-80953868 MS.gene001194:intron 30.0%
TTACTTTACTCATCCTATCT+TGG + chr5.1:80953663-80953682 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr5.1:80953848-80953867 None:intergenic 30.0%
TTGATTGTAGGAATTACATG+AGG - chr5.1:80952002-80952021 MS.gene001194:intron 30.0%
TTGCAACATCATAAGTTTCA+GGG + chr5.1:80953344-80953363 None:intergenic 30.0%
TTTAGACAGATATGATCTCA+GGG - chr5.1:80952612-80952631 MS.gene001194:intron 30.0%
TTTGCAACATCATAAGTTTC+AGG + chr5.1:80953345-80953364 None:intergenic 30.0%
! ACAAATGCACAAAATTTTGG+TGG - chr5.1:80955794-80955813 MS.gene001194:CDS 30.0%
! AGCACAAATGCACAAAATTT+TGG - chr5.1:80955791-80955810 MS.gene001194:CDS 30.0%
! ATTTGCAATGTTTTTCCCTT+AGG - chr5.1:80955577-80955596 MS.gene001194:CDS 30.0%
! ATTTTGTTCTTACGTGCATT+TGG - chr5.1:80956339-80956358 MS.gene001194:CDS 30.0%
! CCAAACCTCTTTTAATAGTT+TGG - chr5.1:80956001-80956020 MS.gene001194:CDS 30.0%
! GGTAGAATTTGATATTGGTT+TGG - chr5.1:80951349-80951368 MS.gene001194:CDS 30.0%
! GTTCTACATTCTTTTCTACT+AGG - chr5.1:80956109-80956128 MS.gene001194:CDS 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr5.1:80953956-80953975 MS.gene001194:intron 30.0%
! TTTGCAATGTTTTTCCCTTA+GGG - chr5.1:80955578-80955597 MS.gene001194:CDS 30.0%
! TTTTAGACAGATATGATCTC+AGG - chr5.1:80952611-80952630 MS.gene001194:intron 30.0%
! TTTTATGTTCTCCGTTAACT+CGG - chr5.1:80955310-80955329 MS.gene001194:CDS 30.0%
!! AATTTCTTCTTTGCTGTTCA+AGG - chr5.1:80952103-80952122 MS.gene001194:intron 30.0%
!! GCTCTGAAATTCAACTTTAT+TGG + chr5.1:80954191-80954210 None:intergenic 30.0%
!!! GTTTGGCTTGAAGTTTTATT+TGG - chr5.1:80956018-80956037 MS.gene001194:CDS 30.0%
AAAATGTGAAGTTCTTGGTC+AGG + chr5.1:80955351-80955370 None:intergenic 35.0%
AAATGTGAAGTTCTTGGTCA+GGG + chr5.1:80955350-80955369 None:intergenic 35.0%
AAGAAAATGTGCAATTCCAG+AGG - chr5.1:80955151-80955170 MS.gene001194:CDS 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr5.1:80953852-80953871 MS.gene001194:intron 35.0%
AAGTTCGTTAGAGGGAAAAA+TGG - chr5.1:80955076-80955095 MS.gene001194:CDS 35.0%
AAGTTGAATTTCAGAGCACA+AGG - chr5.1:80954194-80954213 MS.gene001194:intron 35.0%
AATCTTCACCAAATAGCTTG+CGG - chr5.1:80954071-80954090 MS.gene001194:intron 35.0%
AATGACAGAATCATGATCAG+TGG + chr5.1:80952407-80952426 None:intergenic 35.0%
AATGTGTCTCGCAAATATAC+AGG + chr5.1:80952685-80952704 None:intergenic 35.0%
ACATATTCAGGGGAAGTTAA+AGG - chr5.1:80954669-80954688 MS.gene001194:CDS 35.0%
AGAAAATGTGCAATTCCAGA+GGG - chr5.1:80955152-80955171 MS.gene001194:CDS 35.0%
AGAATCATGATCAGTGGTTA+TGG + chr5.1:80952401-80952420 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr5.1:80953924-80953943 MS.gene001194:intron 35.0%
AGCATGAACTCTTACTTTGA+TGG - chr5.1:80952739-80952758 MS.gene001194:intron 35.0%
AGTTCGTTAGAGGGAAAAAT+GGG - chr5.1:80955077-80955096 MS.gene001194:CDS 35.0%
ATCTCAGTGCAATACCAATT+TGG + chr5.1:80954911-80954930 None:intergenic 35.0%
ATGATAAGTTCGATCTTCAG+AGG + chr5.1:80954841-80954860 None:intergenic 35.0%
ATGATGGTTTACACCAGTAA+AGG + chr5.1:80952269-80952288 None:intergenic 35.0%
ATTAAGGATGCATACTGTGT+TGG - chr5.1:80955543-80955562 MS.gene001194:CDS 35.0%
CAAGTTAGAGTTGTCAGTAA+AGG - chr5.1:80956731-80956750 MS.gene001194:CDS 35.0%
CAATGAGAAAGAAGTAAGAG+CGG - chr5.1:80952828-80952847 MS.gene001194:intron 35.0%
CTCATTATATACTCAAACGC+TGG - chr5.1:80953181-80953200 MS.gene001194:intron 35.0%
CTTACCTTGAGAGCTAAAAA+GGG + chr5.1:80954342-80954361 None:intergenic 35.0%
CTTTATTGGAAGAATGATGG+TGG + chr5.1:80954177-80954196 None:intergenic 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr5.1:80953796-80953815 MS.gene001194:intron 35.0%
GACACGCAGAATATATTAGA+AGG + chr5.1:80956409-80956428 None:intergenic 35.0%
GACTCATAACTCAAAATGGT+TGG + chr5.1:80954522-80954541 None:intergenic 35.0%
GAGGTGGTAGAATTTGATAT+TGG - chr5.1:80951344-80951363 MS.gene001194:CDS 35.0%
GGCAACAATTCAATGTGATA+TGG - chr5.1:80955815-80955834 MS.gene001194:CDS 35.0%
GTCAGACAATATCCAATCAA+TGG + chr5.1:80956243-80956262 None:intergenic 35.0%
GTGTTGAATGAGTGTTTCAT+AGG + chr5.1:80954589-80954608 None:intergenic 35.0%
TAAAACCGTAGACATGTAGA+AGG + chr5.1:80954486-80954505 None:intergenic 35.0%
TACTTTCAGTTGTACAGCTT+AGG - chr5.1:80954301-80954320 MS.gene001194:intron 35.0%
TCATGTAGCTAAATTTGGAG+AGG - chr5.1:80953020-80953039 MS.gene001194:intron 35.0%
TGAATACTTTGCCAGTATTG+AGG - chr5.1:80952863-80952882 MS.gene001194:intron 35.0%
TGATGGTTTACACCAGTAAA+GGG + chr5.1:80952268-80952287 None:intergenic 35.0%
TGCAACATCATAAGTTTCAG+GGG + chr5.1:80953343-80953362 None:intergenic 35.0%
TGCTAACCACTTTATCATAG+AGG + chr5.1:80954132-80954151 None:intergenic 35.0%
TGGGAATACTTGCATTATAG+CGG + chr5.1:80952434-80952453 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr5.1:80953791-80953810 MS.gene001194:intron 35.0%
TTAAGGATGCATACTGTGTT+GGG - chr5.1:80955544-80955563 MS.gene001194:CDS 35.0%
TTAGAGCCTCTATGATAAAG+TGG - chr5.1:80954123-80954142 MS.gene001194:intron 35.0%
TTCCTTATCCATTAACCCTT+AGG - chr5.1:80954996-80955015 MS.gene001194:CDS 35.0%
TTCTCTCTACCCAAACATTA+AGG + chr5.1:80955207-80955226 None:intergenic 35.0%
TTGCAGATCCAGAAATTTGA+CGG + chr5.1:80951877-80951896 None:intergenic 35.0%
TTTACTGGTGTAAACCATCA+TGG - chr5.1:80952268-80952287 MS.gene001194:intron 35.0%
! AAGAAATGAGAGAAAGCACA+TGG + chr5.1:80956468-80956487 None:intergenic 35.0%
! AATTTTCACTCGATTCCAAG+AGG - chr5.1:80952933-80952952 MS.gene001194:intron 35.0%
! AGAAATGAGAGAAAGCACAT+GGG + chr5.1:80956467-80956486 None:intergenic 35.0%
! ATAGGAAGTGTGAAATGTAC+CGG - chr5.1:80956670-80956689 MS.gene001194:CDS 35.0%
! ATGTGGTATGTTGTGGATTT+TGG - chr5.1:80955735-80955754 MS.gene001194:CDS 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr5.1:80953936-80953955 MS.gene001194:intron 35.0%
! GAGGTCAGAATTCCATTTTA+CGG - chr5.1:80953528-80953547 MS.gene001194:intron 35.0%
! GAGTAACTAGCTTCTCAATT+GGG + chr5.1:80954638-80954657 None:intergenic 35.0%
! GTTTTTAACCTGTTCTACGA+TGG - chr5.1:80953553-80953572 MS.gene001194:intron 35.0%
! TAAGCACATCATGATGATGA+TGG + chr5.1:80956200-80956219 None:intergenic 35.0%
! TGAGTAACTAGCTTCTCAAT+TGG + chr5.1:80954639-80954658 None:intergenic 35.0%
! TGTCGCCTTGTAAACTTTTA+TGG + chr5.1:80952036-80952055 None:intergenic 35.0%
!! ACTGAATTGACTTGTAGATG+TGG - chr5.1:80955718-80955737 MS.gene001194:CDS 35.0%
!! GAATTTGATATTGGTTTGGG+AGG - chr5.1:80951353-80951372 MS.gene001194:CDS 35.0%
!! GTGCATTTTGACAGATAAAG+AGG + chr5.1:80951762-80951781 None:intergenic 35.0%
!! TGCCAAATGTTTGAGTTTTC+AGG - chr5.1:80953099-80953118 MS.gene001194:intron 35.0%
AAACAGAGAGCAAGTTAGAC+CGG + chr5.1:80956692-80956711 None:intergenic 40.0%
AAACTGAAGCTTCCTTTGTC+TGG - chr5.1:80952329-80952348 MS.gene001194:intron 40.0%
AAAGCACAACCAAAGAGAAC+AGG + chr5.1:80952298-80952317 None:intergenic 40.0%
AAATGTGAGACAACTTCTCC+TGG + chr5.1:80952501-80952520 None:intergenic 40.0%
AACCCTAATTGACACTCTAC+AGG - chr5.1:80951898-80951917 MS.gene001194:intron 40.0%
AACTCACCTCTACTATCCAT+TGG + chr5.1:80955053-80955072 None:intergenic 40.0%
AATAGCCCAATGGATAGTAG+AGG - chr5.1:80955044-80955063 MS.gene001194:CDS 40.0%
AATGGATAGTAGAGGTGAGT+TGG - chr5.1:80955052-80955071 MS.gene001194:CDS 40.0%
AATGTGAAGTTCTTGGTCAG+GGG + chr5.1:80955349-80955368 None:intergenic 40.0%
AATTCGTCTGTGCTAAGGAA+GGG - chr5.1:80951657-80951676 MS.gene001194:intron 40.0%
ACTCACCTCTACTATCCATT+GGG + chr5.1:80955052-80955071 None:intergenic 40.0%
AGAATGTAGAACCTCGTCTT+AGG + chr5.1:80956101-80956120 None:intergenic 40.0%
AGACTAGACAGGATAGGATT+AGG - chr5.1:80953722-80953741 MS.gene001194:intron 40.0%
AGATCCAGAAATTTGACGGT+GGG + chr5.1:80951873-80951892 None:intergenic 40.0%
AGATGGAAGAGTAAGGACAT+TGG + chr5.1:80953163-80953182 None:intergenic 40.0%
AGGTTAAAAGAGGTAGAGGA+AGG - chr5.1:80953881-80953900 MS.gene001194:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr5.1:80953877-80953896 MS.gene001194:intron 40.0%
AGTGATAGGAACCGAGTTAA+CGG + chr5.1:80955324-80955343 None:intergenic 40.0%
AGTGTAATTCAACCTTGCCT+TGG + chr5.1:80952179-80952198 None:intergenic 40.0%
ATAACATGCCATCGTAGAAC+AGG + chr5.1:80953564-80953583 None:intergenic 40.0%
ATCCTATCAGAGAGACCTAA+GGG + chr5.1:80955014-80955033 None:intergenic 40.0%
ATCTCTATTCTCTAGCATGG+TGG + chr5.1:80953617-80953636 None:intergenic 40.0%
ATGAGCTTGAGTGTGCAAAT+AGG - chr5.1:80956652-80956671 MS.gene001194:CDS 40.0%
ATGATCTCAGGGACAATGAA+TGG - chr5.1:80952623-80952642 MS.gene001194:intron 40.0%
CATTGAATCTTCGCCAAGAT+AGG - chr5.1:80953647-80953666 MS.gene001194:intron 40.0%
CCAGAATATGTCTGCAAAGA+AGG + chr5.1:80953125-80953144 None:intergenic 40.0%
CCATAAAGAGAATAGCCCAA+TGG - chr5.1:80955034-80955053 MS.gene001194:CDS 40.0%
CCATTGGGCTATTCTCTTTA+TGG + chr5.1:80955037-80955056 None:intergenic 40.0%
CCTTACCTTGAGAGCTAAAA+AGG + chr5.1:80954343-80954362 None:intergenic 40.0%
CCTTCTTTGCAGACATATTC+TGG - chr5.1:80953122-80953141 MS.gene001194:intron 40.0%
CTTGTAGATGTGGTATGTTG+TGG - chr5.1:80955728-80955747 MS.gene001194:CDS 40.0%
GAAACTCGGCTTCAAAGTTT+GGG + chr5.1:80952534-80952553 None:intergenic 40.0%
GATGAGTAAAGTAAGCGTAG+CGG - chr5.1:80953669-80953688 MS.gene001194:intron 40.0%
GCATATCTTTAAGCAATGCC+AGG - chr5.1:80952480-80952499 MS.gene001194:intron 40.0%
GCTTGAAGTACACGTCAATT+TGG - chr5.1:80954802-80954821 MS.gene001194:CDS 40.0%
GGAAAAATGGGAAACACATG+TGG - chr5.1:80955089-80955108 MS.gene001194:CDS 40.0%
GGATATTGTCTGACAGTTGT+TGG - chr5.1:80956249-80956268 MS.gene001194:CDS 40.0%
GGCCTGAAAACTCAAACATT+TGG + chr5.1:80953104-80953123 None:intergenic 40.0%
GGTAGCACCTATAGTAAAGT+TGG - chr5.1:80953771-80953790 MS.gene001194:intron 40.0%
GTAATCGATACCTGTTAGAG+CGG + chr5.1:80952237-80952256 None:intergenic 40.0%
GTGTAATTCAACCTTGCCTT+GGG + chr5.1:80952178-80952197 None:intergenic 40.0%
GTTAGAGTTGTCAGTAAAGG+TGG - chr5.1:80956734-80956753 MS.gene001194:CDS 40.0%
TAATTACACTAGTGGCTGTC+AGG - chr5.1:80953479-80953498 MS.gene001194:intron 40.0%
TATGGAATTCGAGTCTGAAG+AGG - chr5.1:80951532-80951551 MS.gene001194:intron 40.0%
TCGTCCATCATCTCAATATG+CGG + chr5.1:80951398-80951417 None:intergenic 40.0%
TCTGCACTCATCAAAGAGTA+TGG - chr5.1:80951950-80951969 MS.gene001194:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr5.1:80953839-80953858 None:intergenic 40.0%
TGAAACTCGGCTTCAAAGTT+TGG + chr5.1:80952535-80952554 None:intergenic 40.0%
TGTAATTCAACCTTGCCTTG+GGG + chr5.1:80952177-80952196 None:intergenic 40.0%
TGTGTCCTTCTACATGTCTA+CGG - chr5.1:80954478-80954497 MS.gene001194:intron 40.0%
TGTGTTGAAAAGCCAGACAA+AGG + chr5.1:80952344-80952363 None:intergenic 40.0%
TTCTTACGTGCATTTGGTTG+AGG - chr5.1:80956345-80956364 MS.gene001194:CDS 40.0%
TTGACGAATTTGAGTCTTGC+TGG - chr5.1:80952581-80952600 MS.gene001194:intron 40.0%
! AGATATGCCACTTGCAGAAA+CGG + chr5.1:80952468-80952487 None:intergenic 40.0%
! AGCCTGTAGAGTGTCAATTA+GGG + chr5.1:80951903-80951922 None:intergenic 40.0%
! ATCCCATCACCAATGTTTTC+TGG - chr5.1:80952146-80952165 MS.gene001194:intron 40.0%
! GAAATGAGAGAAAGCACATG+GGG + chr5.1:80956466-80956485 None:intergenic 40.0%
! GACCTAAGGGTTAATGGATA+AGG + chr5.1:80955001-80955020 None:intergenic 40.0%
! GCTTTACTGAGGTTGATTGT+AGG - chr5.1:80951990-80952009 MS.gene001194:intron 40.0%
! TCCCATCACCAATGTTTTCT+GGG - chr5.1:80952147-80952166 MS.gene001194:intron 40.0%
! TGATCTAAGATAACTCCCTC+TGG + chr5.1:80955170-80955189 None:intergenic 40.0%
!! TCCAAAGGTTTTGTGGATGA+GGG - chr5.1:80954250-80954269 MS.gene001194:intron 40.0%
!! TTCTCTAGCATGGTGGATTA+AGG + chr5.1:80953610-80953629 None:intergenic 40.0%
!! TTGCAAACTGACGTTGCTTT+TGG + chr5.1:80953217-80953236 None:intergenic 40.0%
!!! CCTTTTTAGCTCTCAAGGTA+AGG - chr5.1:80954340-80954359 MS.gene001194:intron 40.0%
!!! CTCTGTTTTGAAAGCTGTTG+AGG - chr5.1:80956704-80956723 MS.gene001194:CDS 40.0%
!!! GGTAGTTTTGACTTGTGTGT+TGG - chr5.1:80954215-80954234 MS.gene001194:intron 40.0%
!!! TTGTCTGGCTTTTCAACACA+TGG - chr5.1:80952344-80952363 MS.gene001194:intron 40.0%
AAACCTTTGGACTTGAGGTG+TGG + chr5.1:80954241-80954260 None:intergenic 45.0%
AAATTTGACGGTGGGAACGA+AGG + chr5.1:80951865-80951884 None:intergenic 45.0%
AACCCTTAGGTCTCTCTGAT+AGG - chr5.1:80955009-80955028 MS.gene001194:CDS 45.0%
AACGACGAGAAGAACTGACT+CGG + chr5.1:80951607-80951626 None:intergenic 45.0%
AAGCAATACATTCCGCTTGC+AGG - chr5.1:80952650-80952669 MS.gene001194:intron 45.0%
AATTCCTATGCTCGTCGTGT+TGG - chr5.1:80951572-80951591 MS.gene001194:intron 45.0%
ACACCAGTAAAGGGAGCAAA+GGG + chr5.1:80952259-80952278 None:intergenic 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr5.1:80953749-80953768 MS.gene001194:intron 45.0%
ACACTACTTACCGCTCTAAC+AGG - chr5.1:80952224-80952243 MS.gene001194:intron 45.0%
AGAAACGGTAACGAGTGTCT+GGG + chr5.1:80952453-80952472 None:intergenic 45.0%
AGAGTATGGTGGTATCAGCA+AGG - chr5.1:80951964-80951983 MS.gene001194:intron 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr5.1:80953861-80953880 MS.gene001194:intron 45.0%
AGCCCAGAAAACATTGGTGA+TGG + chr5.1:80952152-80952171 None:intergenic 45.0%
AGTGCAGACATAATTCTGCG+AGG + chr5.1:80951938-80951957 None:intergenic 45.0%
ATCAGTGGTTATGGAGAGTG+GGG + chr5.1:80952392-80952411 None:intergenic 45.0%
ATCCAAAGCTGAGGATGATG+GGG - chr5.1:80952984-80953003 MS.gene001194:intron 45.0%
ATTCATGGCATCCAAAGCTG+AGG - chr5.1:80952975-80952994 MS.gene001194:intron 45.0%
CAATTCGTCTGTGCTAAGGA+AGG - chr5.1:80951656-80951675 MS.gene001194:intron 45.0%
CAGAGAGACCTAAGGGTTAA+TGG + chr5.1:80955007-80955026 None:intergenic 45.0%
CAGATCCAGAAATTTGACGG+TGG + chr5.1:80951874-80951893 None:intergenic 45.0%
CATCCAAAGCTGAGGATGAT+GGG - chr5.1:80952983-80953002 MS.gene001194:intron 45.0%
CATGGTCAACCTGTTCTCTT+TGG - chr5.1:80952286-80952305 MS.gene001194:intron 45.0%
CCACAAAACCTTTGGACTTG+AGG + chr5.1:80954246-80954265 None:intergenic 45.0%
CTAACCTTCCCATTGCTGAT+GGG + chr5.1:80953429-80953448 None:intergenic 45.0%
CTTCAAAGTTTGGGAACTGG+AGG + chr5.1:80952525-80952544 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr5.1:80953838-80953857 None:intergenic 45.0%
CTTGTAACTGATCCCACGTT+GGG + chr5.1:80955923-80955942 None:intergenic 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr5.1:80953748-80953767 MS.gene001194:intron 45.0%
GAGACAATTCGTCTGTGCTA+AGG - chr5.1:80951652-80951671 MS.gene001194:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr5.1:80953871-80953890 MS.gene001194:intron 45.0%
GAGTTGGCAAGTTCGTTAGA+GGG - chr5.1:80955068-80955087 MS.gene001194:CDS 45.0%
GATCAGTGGTTATGGAGAGT+GGG + chr5.1:80952393-80952412 None:intergenic 45.0%
GATCCTATCAGAGAGACCTA+AGG + chr5.1:80955015-80955034 None:intergenic 45.0%
GATGAGTGGTAAGACTAGAC+AGG - chr5.1:80953711-80953730 MS.gene001194:intron 45.0%
GCGTTTGATCTCTCTGTCTT+TGG + chr5.1:80951708-80951727 None:intergenic 45.0%
GGGTAGAGAGAAATGTCTCT+AGG - chr5.1:80955215-80955234 MS.gene001194:CDS 45.0%
GTGGTAAGACTAGACAGGAT+AGG - chr5.1:80953716-80953735 MS.gene001194:intron 45.0%
TACACCAGTAAAGGGAGCAA+AGG + chr5.1:80952260-80952279 None:intergenic 45.0%
TATGGTGGTATCAGCAAGGT+TGG - chr5.1:80951968-80951987 MS.gene001194:intron 45.0%
TCCATCATCTCAATATGCGG+CGG + chr5.1:80951395-80951414 None:intergenic 45.0%
TCCCTCATCCACAAAACCTT+TGG + chr5.1:80954254-80954273 None:intergenic 45.0%
TCCTAAGACCGCAAGCTATT+TGG + chr5.1:80954082-80954101 None:intergenic 45.0%
TCGAATTCCATACCCTCAGA+AGG + chr5.1:80951524-80951543 None:intergenic 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr5.1:80953747-80953766 MS.gene001194:intron 45.0%
TGATCAGTGGTTATGGAGAG+TGG + chr5.1:80952394-80952413 None:intergenic 45.0%
TTACCCTTTGCTCCCTTTAC+TGG - chr5.1:80952253-80952272 MS.gene001194:intron 45.0%
TTTGGGAGGAGAATATGAGG+AGG - chr5.1:80951367-80951386 MS.gene001194:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5.1:80954005-80954024 None:intergenic 45.0%
! ACCAAATAGCTTGCGGTCTT+AGG - chr5.1:80954078-80954097 MS.gene001194:intron 45.0%
! AGAGAACAGGTTGACCATGA+TGG + chr5.1:80952285-80952304 None:intergenic 45.0%
! ATGCGTTTTCTTCCCAACGT+GGG - chr5.1:80955908-80955927 MS.gene001194:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5.1:80954006-80954025 None:intergenic 45.0%
! CAGCCTGTAGAGTGTCAATT+AGG + chr5.1:80951904-80951923 None:intergenic 45.0%
! CCTCAAGTCCAAAGGTTTTG+TGG - chr5.1:80954243-80954262 MS.gene001194:intron 45.0%
! CTTGGGAGAGCATATGAATG+AGG - chr5.1:80953509-80953528 MS.gene001194:intron 45.0%
! GATGATTTGGGAGAAAGCAG+CGG - chr5.1:80951458-80951477 MS.gene001194:CDS 45.0%
! GCACTCATCAAAGAGTATGG+TGG - chr5.1:80951953-80951972 MS.gene001194:intron 45.0%
! GCCCAGAAAACATTGGTGAT+GGG + chr5.1:80952151-80952170 None:intergenic 45.0%
! TGAGTTGGCAAGTTCGTTAG+AGG - chr5.1:80955067-80955086 MS.gene001194:CDS 45.0%
! TGGTTTGGGAGGAGAATATG+AGG - chr5.1:80951364-80951383 MS.gene001194:CDS 45.0%
!! GCATATTGAGATGATGGACG+AGG - chr5.1:80951397-80951416 MS.gene001194:CDS 45.0%
!! GTCCAAAGGTTTTGTGGATG+AGG - chr5.1:80954249-80954268 MS.gene001194:intron 45.0%
!! TCAAGGTGATCTTGATGACG+AGG - chr5.1:80952120-80952139 MS.gene001194:intron 45.0%
!! TCTCTAGGAGCTTTTGCTCT+GGG - chr5.1:80955230-80955249 MS.gene001194:CDS 45.0%
!!! AGCTTTTGCTCTGGGATTAC+AGG - chr5.1:80955238-80955257 MS.gene001194:CDS 45.0%
!!! CACACCCTTTTTAGCTCTCA+AGG - chr5.1:80954335-80954354 MS.gene001194:intron 45.0%
!!! CTTTTGCTCTGGGATTACAG+GGG - chr5.1:80955240-80955259 MS.gene001194:CDS 45.0%
!!! GCTTTTGCTCTGGGATTACA+GGG - chr5.1:80955239-80955258 MS.gene001194:CDS 45.0%
!! AATTTATTAATAGAATTATA+TGG - chr5.1:80955510-80955529 MS.gene001194:CDS 5.0%
!! ATAATTCTATTAATAAATTT+GGG + chr5.1:80955509-80955528 None:intergenic 5.0%
!! TATAATTCTATTAATAAATT+TGG + chr5.1:80955510-80955529 None:intergenic 5.0%
!!! AATATCATAAATTTAAAATA+TGG + chr5.1:80956542-80956561 None:intergenic 5.0%
AACCTCGTCTTAGGTGCGTT+AGG + chr5.1:80956092-80956111 None:intergenic 50.0%
AACTCCCATCAGCAATGGGA+AGG - chr5.1:80953422-80953441 MS.gene001194:intron 50.0%
ACGAAGGCAGTGAACCTGAT+CGG + chr5.1:80951849-80951868 None:intergenic 50.0%
ACTCTACAGGCTGCTGGTAT+GGG - chr5.1:80951911-80951930 MS.gene001194:intron 50.0%
AGCTGCAAAAAGAGTTGCGC+AGG - chr5.1:80953380-80953399 MS.gene001194:intron 50.0%
AGTTGCGCAGGTAATGCGAA+AGG - chr5.1:80953392-80953411 MS.gene001194:intron 50.0%
ATTGACACTCTACAGGCTGC+TGG - chr5.1:80951905-80951924 MS.gene001194:intron 50.0%
CAACCCTTGTGACTGTTCGT+GGG + chr5.1:80951730-80951749 None:intergenic 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr5.1:80953750-80953769 MS.gene001194:intron 50.0%
CACTCGATTCCAAGAGGAGT+TGG - chr5.1:80952939-80952958 MS.gene001194:intron 50.0%
CAGAAACGGTAACGAGTGTC+TGG + chr5.1:80952454-80952473 None:intergenic 50.0%
CCAACGTGGGATCAGTTACA+AGG - chr5.1:80955921-80955940 MS.gene001194:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5.1:80954004-80954023 MS.gene001194:intron 50.0%
CCATCAGCAATGGGAAGGTT+AGG - chr5.1:80953427-80953446 MS.gene001194:intron 50.0%
CCTAACCTTCCCATTGCTGA+TGG + chr5.1:80953430-80953449 None:intergenic 50.0%
CCTTGTAACTGATCCCACGT+TGG + chr5.1:80955924-80955943 None:intergenic 50.0%
CGGCTTCAAAGTTTGGGAAC+TGG + chr5.1:80952528-80952547 None:intergenic 50.0%
CGTTCCCACCGTCAAATTTC+TGG - chr5.1:80951866-80951885 MS.gene001194:intron 50.0%
CTCAGAAGGTTCCAGATCTC+CGG + chr5.1:80951510-80951529 None:intergenic 50.0%
CTCGTTACCGTTTCTGCAAG+TGG - chr5.1:80952458-80952477 MS.gene001194:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5.1:80954001-80954020 None:intergenic 50.0%
GAAACACATGTGGCAGAGAG+TGG - chr5.1:80955099-80955118 MS.gene001194:CDS 50.0%
GAAACCAACACGACGAGCAT+AGG + chr5.1:80951579-80951598 None:intergenic 50.0%
GAAGCCAGATACGATCCACT+TGG + chr5.1:80951795-80951814 None:intergenic 50.0%
GCATCCAAAGCTGAGGATGA+TGG - chr5.1:80952982-80953001 MS.gene001194:intron 50.0%
GCTATCACTTCGCTGAGTGA+TGG + chr5.1:80952722-80952741 None:intergenic 50.0%
GCTCTCAAGGTAAGGCTAGT+TGG - chr5.1:80954348-80954367 MS.gene001194:intron 50.0%
GGAGAACTCCCATCAGCAAT+GGG - chr5.1:80953418-80953437 MS.gene001194:intron 50.0%
GGCTGTCAGGATGAAAGCTT+GGG - chr5.1:80953492-80953511 MS.gene001194:intron 50.0%
GGTTGGCACGCTAACATTCA+TGG - chr5.1:80952960-80952979 MS.gene001194:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr5.1:80953755-80953774 None:intergenic 50.0%
TACCTAACGCACCTAAGACG+AGG - chr5.1:80956087-80956106 MS.gene001194:CDS 50.0%
TCAGTGGTTATGGAGAGTGG+GGG + chr5.1:80952391-80952410 None:intergenic 50.0%
TCGTCTTAGGTGCGTTAGGT+AGG + chr5.1:80956088-80956107 None:intergenic 50.0%
TCTGAATGATAGCTCCGTCG+CGG + chr5.1:80951634-80951653 None:intergenic 50.0%
TCTGCCAAGTGGATCGTATC+TGG - chr5.1:80951788-80951807 MS.gene001194:intron 50.0%
TGCACGATTCTTCTGCCAAG+TGG - chr5.1:80951777-80951796 MS.gene001194:intron 50.0%
TGGCTGTCAGGATGAAAGCT+TGG - chr5.1:80953491-80953510 MS.gene001194:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+CGG - chr5.1:80953677-80953696 MS.gene001194:intron 50.0%
! ACGACGAGAAGAACTGACTC+GGG + chr5.1:80951606-80951625 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5.1:80954007-80954026 None:intergenic 50.0%
! CGATTCCAAGAGGAGTTGGT+TGG - chr5.1:80952943-80952962 MS.gene001194:intron 50.0%
! GATGCGTTTTCTTCCCAACG+TGG - chr5.1:80955907-80955926 MS.gene001194:CDS 50.0%
! GGAGATCTGGAACCTTCTGA+GGG - chr5.1:80951509-80951528 MS.gene001194:intron 50.0%
! TCTGGAACCTTCTGAGGGTA+TGG - chr5.1:80951514-80951533 MS.gene001194:intron 50.0%
!! CAGCAAGGTTGGCTTTACTG+AGG - chr5.1:80951979-80951998 MS.gene001194:intron 50.0%
!! GCTGTTTATTTTCCCGAGGC+CGG - chr5.1:80951488-80951507 MS.gene001194:CDS 50.0%
!! GTCTCTAGGAGCTTTTGCTC+TGG - chr5.1:80955229-80955248 MS.gene001194:CDS 50.0%
!! TGAGATGATGGACGAGGATG+AGG - chr5.1:80951403-80951422 MS.gene001194:CDS 50.0%
!!! CGGTGCTGTTTATTTTCCCG+AGG - chr5.1:80951484-80951503 MS.gene001194:CDS 50.0%
AACGCCCACGAACAGTCACA+AGG - chr5.1:80951723-80951742 MS.gene001194:intron 55.0%
ACACATGTGGCAGAGAGTGG+TGG - chr5.1:80955102-80955121 MS.gene001194:CDS 55.0%
ACATGGCTTACCGCCATGTC+TGG - chr5.1:80952361-80952380 MS.gene001194:intron 55.0%
ACATTCCGCTTGCAGGCACT+GGG - chr5.1:80952657-80952676 MS.gene001194:intron 55.0%
ACGCCCACGAACAGTCACAA+GGG - chr5.1:80951724-80951743 MS.gene001194:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5.1:80953993-80954012 None:intergenic 55.0%
AGGTGCGTTAGGTAGGTGTG+TGG + chr5.1:80956081-80956100 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5.1:80953992-80954011 MS.gene001194:intron 55.0%
ATTGAGGACCCCATCTCCGA+TGG - chr5.1:80952879-80952898 MS.gene001194:intron 55.0%
CACATGTGGCAGAGAGTGGT+GGG - chr5.1:80955103-80955122 MS.gene001194:CDS 55.0%
CACTCTACAGGCTGCTGGTA+TGG - chr5.1:80951910-80951929 MS.gene001194:intron 55.0%
CAGTGGTTATGGAGAGTGGG+GGG + chr5.1:80952390-80952409 None:intergenic 55.0%
CCAACCCTTGTGACTGTTCG+TGG + chr5.1:80951731-80951750 None:intergenic 55.0%
CCACGAACAGTCACAAGGGT+TGG - chr5.1:80951728-80951747 MS.gene001194:intron 55.0%
CGAAGGCAGTGAACCTGATC+GGG + chr5.1:80951848-80951867 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5.1:80953999-80954018 MS.gene001194:intron 55.0%
CGAGTCTGAAGAGGCTGCTA+AGG - chr5.1:80951541-80951560 MS.gene001194:intron 55.0%
CGCAGGTAATGCGAAAGGAG+GGG - chr5.1:80953397-80953416 MS.gene001194:intron 55.0%
CGGATGTTGCGTTGGATGAG+TGG - chr5.1:80953697-80953716 MS.gene001194:intron 55.0%
CTCCCCATCATCCTCAGCTT+TGG + chr5.1:80952989-80953008 None:intergenic 55.0%
CTTGCCTCTCCATCGGAGAT+GGG + chr5.1:80952891-80952910 None:intergenic 55.0%
CTTGGTCAGGGGAGAGTGAT+AGG + chr5.1:80955338-80955357 None:intergenic 55.0%
GCCGCCGCATATTGAGATGA+TGG - chr5.1:80951391-80951410 MS.gene001194:CDS 55.0%
GCGCAGGTAATGCGAAAGGA+GGG - chr5.1:80953396-80953415 MS.gene001194:intron 55.0%
GGAGATGGGGTCCTCAATAC+TGG + chr5.1:80952877-80952896 None:intergenic 55.0%
GGGAGAACTCCCATCAGCAA+TGG - chr5.1:80953417-80953436 MS.gene001194:intron 55.0%
GGGGTCAGCCCAGAAAACAT+TGG + chr5.1:80952158-80952177 None:intergenic 55.0%
TACATTCCGCTTGCAGGCAC+TGG - chr5.1:80952656-80952675 MS.gene001194:intron 55.0%
TCGGATGCTTGCCTCTCCAT+CGG + chr5.1:80952898-80952917 None:intergenic 55.0%
TGCGCAGGTAATGCGAAAGG+AGG - chr5.1:80953395-80953414 MS.gene001194:intron 55.0%
TGGCCACACCTCAAGTCCAA+AGG - chr5.1:80954235-80954254 MS.gene001194:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5.1:80953993-80954012 MS.gene001194:intron 55.0%
TTGCCTCTCCATCGGAGATG+GGG + chr5.1:80952890-80952909 None:intergenic 55.0%
! CGAACTTGTTCCACCCGATC+AGG - chr5.1:80951832-80951851 MS.gene001194:intron 55.0%
! CGGAGATCTGGAACCTTCTG+AGG - chr5.1:80951508-80951527 MS.gene001194:intron 55.0%
! TGTTTTCTGGGCTGACCCCA+AGG - chr5.1:80952159-80952178 MS.gene001194:intron 55.0%
!! CAAAGCTGAGGATGATGGGG+AGG - chr5.1:80952987-80953006 MS.gene001194:intron 55.0%
!! GATGATGGACGAGGATGAGG+AGG - chr5.1:80951406-80951425 MS.gene001194:CDS 55.0%
AGGCAGTGAACCTGATCGGG+TGG + chr5.1:80951845-80951864 None:intergenic 60.0%
AGGTACCCAGTGCCTGCAAG+CGG + chr5.1:80952665-80952684 None:intergenic 60.0%
AGGTTCCAGATCTCCGGCCT+CGG + chr5.1:80951504-80951523 None:intergenic 60.0%
CGGAGATGCGGATGTTGCGT+TGG - chr5.1:80953689-80953708 MS.gene001194:intron 60.0%
GCGTGCCAACCAACTCCTCT+TGG + chr5.1:80952951-80952970 None:intergenic 60.0%
GCTTGCCTCTCCATCGGAGA+TGG + chr5.1:80952892-80952911 None:intergenic 60.0%
TTGGGAGAAAGCAGCGGCAG+CGG - chr5.1:80951464-80951483 MS.gene001194:CDS 60.0%
! TTTTCCCGAGGCCGGAGATC+TGG - chr5.1:80951496-80951515 MS.gene001194:intron 60.0%
GGACCCCATCTCCGATGGAG+AGG - chr5.1:80952884-80952903 MS.gene001194:intron 65.0%
GGTTCCAGATCTCCGGCCTC+GGG + chr5.1:80951503-80951522 None:intergenic 65.0%
TCTCGTCGTTCTCGCCGCGA+CGG - chr5.1:80951617-80951636 MS.gene001194:intron 65.0%
TCTGGGCTGACCCCAAGGCA+AGG - chr5.1:80952164-80952183 MS.gene001194:intron 65.0%
!! GTGGCAGAGAGTGGTGGGTG+AGG - chr5.1:80955108-80955127 MS.gene001194:CDS 65.0%
!! GAGTGGGGGGCGTCCAGACA+TGG + chr5.1:80952377-80952396 None:intergenic 70.0%
!! TGGGGGGCGTCCAGACATGG+CGG + chr5.1:80952374-80952393 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 80951335 80956791 80951335 ID=MS.gene001194
chr5.1 mRNA 80951335 80956791 80951335 ID=MS.gene001194.t1;Parent=MS.gene001194
chr5.1 exon 80954596 80956791 80954596 ID=MS.gene001194.t1.exon1;Parent=MS.gene001194.t1
chr5.1 CDS 80954596 80956791 80954596 ID=cds.MS.gene001194.t1;Parent=MS.gene001194.t1
chr5.1 exon 80951335 80951508 80951335 ID=MS.gene001194.t1.exon2;Parent=MS.gene001194.t1
chr5.1 CDS 80951335 80951508 80951335 ID=cds.MS.gene001194.t1;Parent=MS.gene001194.t1
Gene Sequence

>MS.gene001194

ATGGAGAACGAGGTGGTAGAATTTGATATTGGTTTGGGAGGAGAATATGAGGAGGAGCCGCCGCATATTGAGATGATGGACGAGGATGAGGAGGAAGAATATGAAGAAGTAGAAGAAGAAGATGATGATTTGGGAGAAAGCAGCGGCAGCGGTGCTGTTTATTTTCCCGAGGCCGGAGATCTGGAACCTTCTGAGGGTATGGAATTCGAGTCTGAAGAGGCTGCTAAGGCTTTCTATAATTCCTATGCTCGTCGTGTTGGTTTCAGTACCCGAGTCAGTTCTTCTCGTCGTTCTCGCCGCGACGGAGCTATCATTCAGAGACAATTCGTCTGTGCTAAGGAAGGGTTTCGCAATTTGAACGAGAAACGTACCAAAGACAGAGAGATCAAACGCCCACGAACAGTCACAAGGGTTGGATGCAAAGCCTCTTTATCTGTCAAAATGCACGATTCTTCTGCCAAGTGGATCGTATCTGGCTTCGTCAGAGAACACAATCACGAACTTGTTCCACCCGATCAGGTTCACTGCCTTCGTTCCCACCGTCAAATTTCTGGATCTGCAAAAACCCTAATTGACACTCTACAGGCTGCTGGTATGGGTCCTCGCAGAATTATGTCTGCACTCATCAAAGAGTATGGTGGTATCAGCAAGGTTGGCTTTACTGAGGTTGATTGTAGGAATTACATGAGGAATAATCGCCATAAAAGTTTACAAGGCGACATTCAACTTGTTCTTGATTATTTGAGACAAATGCATGCCCAAAATCCTAATTTCTTCTTTGCTGTTCAAGGTGATCTTGATGACGAGGATCATCCCATCACCAATGTTTTCTGGGCTGACCCCAAGGCAAGGTTGAATTACACTTTTTTCGGAGATACTGTCACTTTTGACACTACTTACCGCTCTAACAGGTATCGATTACCCTTTGCTCCCTTTACTGGTGTAAACCATCATGGTCAACCTGTTCTCTTTGGTTGTGCTTTTCTAATTAATGAAACTGAAGCTTCCTTTGTCTGGCTTTTCAACACATGGCTTACCGCCATGTCTGGACGCCCCCCACTCTCCATAACCACTGATCATGATTCTGTCATTCAGTCCGCTATAATGCAAGTATTCCCAGACACTCGTTACCGTTTCTGCAAGTGGCATATCTTTAAGCAATGCCAGGAGAAGTTGTCTCACATTTTCCTCCAGTTCCCAAACTTTGAAGCCGAGTTTCACAAATGTGTTAACTTGACTGACTCAATTGACGAATTTGAGTCTTGCTGGTCCACACTTTTAGACAGATATGATCTCAGGGACAATGAATGGCTTCAAGCAATACATTCCGCTTGCAGGCACTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAGATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGCTATGTGAATGCTTCAACCAGTTTAAATCAGTTCTTTAAGCTTTATGAGAAAACGCTTGAAAGTCGCAATGAGAAAGAAGTAAGAGCGGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCGATGGAGAGGCAAGCATCCGAGCTTTACACAAGAAAAATTTTCACTCGATTCCAAGAGGAGTTGGTTGGCACGCTAACATTCATGGCATCCAAAGCTGAGGATGATGGGGAGGTCATTACATATCATGTAGCTAAATTTGGAGAGGATCATAAAGCATACAATGTTAGATTCAATGTTTTAGAGATGAAAGCGACTTGCAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATATTCTGGCAGTATTTAGAGTTACCAATGTCCTTACTCTTCCATCTCATTATATACTCAAACGCTGGACAAAAAATGCCAAAAGCAACGTCAGTTTGCAAGAACATTCTTCTCATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAATACTCTCCGACATGAAGCCTTTAAATTTGTTGATAAAGGTGCAAGCTCCCCTGAAACTTATGATGTTGCAAAGGATGCTTTACAAGAAGCTGCAAAAAGAGTTGCGCAGGTAATGCGAAAGGAGGGGAGAACTCCCATCAGCAATGGGAAGGTTAGGAGTCACTTGCTGAATGATGAAAATCATGCTAATTACACTAGTGGCTGTCAGGATGAAAGCTTGGGAGAGCATATGAATGAGGTCAGAATTCCATTTTACGGTTGTTTTTAACCTGTTCTACGATGGCATGTTATATGTATTTTTAATGTATTTTACTCCTTAATCCACCATGCTAGAGAATAGAGATATAAAACTAACATTGAATCTTCGCCAAGATAGGATGAGTAAAGTAAGCGTAGCGGAGATGCGGATGTTGCGTTGGATGAGTGGTAAGACTAGACAGGATAGGATTAGGAATGACACCATTAGAGAGAGAGTGGGGGTAGCACCTATAGTAAAGTTGGTAGAAAATAGGCTTAGATGGTTTGGACATGTAGAGAGAAGACCCGTAGATGCCGTTGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGGCCTAAGAAAACAATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTTTTTGATAGAACACTATGGCGTCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTATTGAATCTTCACCAAATAGCTTGCGGTCTTAGGATAATTGAATCTTGAAATGATATTAGAGCCTCTATGATAAAGTGGTTAGCAGTTTGATACTTGTCAGTTGTCACCACCATCATTCTTCCAATAAAGTTGAATTTCAGAGCACAAGGTAGTTTTGACTTGTGTGTTGGCCACACCTCAAGTCCAAAGGTTTTGTGGATGAGGGAATGTGCTAGAGATATAAAATCAATCTTTACTTTCAGTTGTACAGCTTAGGTTATTCAGCGACACACCCTTTTTAGCTCTCAAGGTAAGGCTAGTTGGCAATTGCTTCTCAATCTTAACTCTTTGACCTTCATTTTTGTTGAGTGCTATTGCATATGTTCTCTATATATTATAAGTCCTACTAATATATAATCATCATATGCTTTTGTGTCCTTCTACATGTCTACGGTTTTAATACTAAAATCTTCCAACCATTTTGAGTTATGAGTCTTGTGACTCAAAAGTATCTGAATGTTTGTTCAATTTGAGTAATACCTATGAAACACTCATTCAACACTTATTTATGCAGTTTATAGTCTAAAACCCAATTGAGAAGCTAGTTACTCATTTTATTTGTACATATTCAGGGGAAGTTAAAGGTAAACACGTAAGATATGTTTTTTTACATTATTTGTACGCATTTTATTTGCTCCAAATATTGATTGTGATACAATTTTTGTTGTAAAAAAATAATTTATTTACATCAATTGGCTTGAAGTACACGTCAATTTGGAAGAAAATTTAATCCTCTGAAGATCGAACTTATCATCAATTAGGATTTAATTTACTCAATTATTTTAAGTCATCTTTTAAGAACCAAATTGGTATTGCACTGAGATTTTTAGAGAATAAAGTAACATCTTGATTTCATTGATTGAACAAAGTTGGCCTTTTGAAAGATAAATTCCTTATCCATTAACCCTTAGGTCTCTCTGATAGGATCCATAAAGAGAATAGCCCAATGGATAGTAGAGGTGAGTTGGCAAGTTCGTTAGAGGGAAAAATGGGAAACACATGTGGCAGAGAGTGGTGGGTGAGGTGTGTGATCTATTTTGTTATAAGAAAATGTGCAATTCCAGAGGGAGTTATCTTAGATCATTATTCAGTTAGAACCTTAATGTTTGGGTAGAGAGAAATGTCTCTAGGAGCTTTTGCTCTGGGATTACAGGGGTTAATCTTCTGTAATGTAATATTTTCTTTTTCAATCAATAATACTAGTTTTATGTTCTCCGTTAACTCGGTTCCTATCACTCTCCCCTGACCAAGAACTTCACATTTTGATGTTTTAATCGTTACTTTACATAGATACATTACATGTGAATAGATTTAGTCATTAGTTTTCTTTTTTCTCTTAGGAATTTGTATTTCGTCAGTCTTGTTACTGCATTCAGTTGTCTGATGTTCATTGTTTTCACCCAAATTTATTAATAGAATTATATGGTTTTGAATTAATTAAGGATGCATACTGTGTTGGGTTTAGTTTTCATTTGCAATGTTTTTCCCTTAGGGCATAAAGAAAAATATTTGCATCATATATCATCTCAACATTTTATGATTCTGTTTTCATTAAAGCATTCTTTGAACACATTTTGTGTTTTAATATTGGGTTTTAAGCAATTAATGTTGACTGAATTGACTTGTAGATGTGGTATGTTGTGGATTTTGGTATTATCAACGAAGTTATGTTTACTGCATTGTAAGCACAAATGCACAAAATTTTGGTGGCAACAATTCAATGTGATATGGAGACAAGAAAAAACAGCAGTGTCAAATGCTATAAACCAAAAACATCATTAACAACATTAATCATTAATCGATGCGTTTTCTTCCCAACGTGGGATCAGTTACAAGGATCAAACAATGCATAATGTCTTGTTATAAATCACATTTAAAGAGAGACAATTTGACTCCAAACCTCTTTTAATAGTTTGGCTTGAAGTTTTATTTGGACTATCCTCAATCTGATTTATTTTCTTACTGGGCTTTCCACACACCTACCTAACGCACCTAAGACGAGGTTCTACATTCTTTTCTACTAGGAACTATCCCTATTTTTTTTCTAATGATTTTATTTACTCTATGATACCTTTATAGGGTTATTCTTTCCATCATCATCATGATGTGCTTAATTGTATATTAATTTAATACCCATTGATTGGATATTGTCTGACAGTTGTTGGAACAGAAGCATGTGATATTAGTGTTCTTTGTGAATTGCAATTAGCCAAAAAGTGCTTTCACAAATATATTTTGTTCTTACGTGCATTTGGTTGAGGAATGTTGAATAATAATGATATGGAAAGAGAGGGAACAACCTTCTAATATATTCTGCGTGTCTTTCATTTTTCTGTTTTAGTAGATTTGTTATTCTCCCCATGTGCTTTCTCTCATTTCTTTCAAATGCTGTTTTCTTGAATTTTCTTTTGTCTAATAGATTATATCGGATACCATATTTTAAATTTATGATATTTCATACTCAAATATGCTTTTGTTTATCTGAATTACTTAATATCTAATATCTTGCAGGATGATATGGATAAGCATATCACGAAACTTACGGATGAGCTTGAGTGTGCAAATAGGAAGTGTGAAATGTACCGGTCTAACTTGCTCTCTGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTGTCAGTAAAGGTGGAAAACATTAAGATAAGCATGAAAGACGGCCTCTGA
Protein sequence

>MS.gene001194.t1

MENEVVEFDIGLGGEYEEEPPHIEMMDEDEEEEYEEVEEEDDDLGESSGSGAVYFPEAGDLEPSEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTVTRVGCKASLSVKMHDSSAKWIVSGFVREHNHELVPPDQVHCLRSHRQISGSAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRHKSLQGDIQLVLDYLRQMHAQNPNFFFAVQGDLDDEDHPITNVFWADPKARLNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINETEASFVWLFNTWLTAMSGRPPLSITTDHDSVIQSAIMQVFPDTRYRFCKWHIFKQCQEKLSHIFLQFPNFEAEFHKCVNLTDSIDEFESCWSTLLDRYDLRDNEWLQAIHSACRHWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTSLNQFFKLYEKTLESRNEKEVRADYDTMNTLPVLRTPSPMERQASELYTRKIFTRFQEELVGTLTFMASKAEDDGEVITYHVAKFGEDHKAYNVRFNVLEMKATCSCQMFEFSGLLCRHILAVFRVTNVLTLPSHYILKRWTKNAKSNVSLQEHSSHVYTYYLESHTVRYNTLRHEAFKFVDKGASSPETYDVAKDALQEAAKRVAQVMRKEGRTPISNGKVRSHLLNDENHANYTSGCQDESLGEHMNEDDMDKHITKLTDELECANRKCEMYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGL