AlfalfaGEDB | MS.gene00932

M. sativa cultivar XinJiangDaYe / MS.gene00932

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00932.t1	XP_024632090.1	97.9	761	13	1	1	758	1	761	0.00E+00	1526.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00932.t1	Q9M8J3	59.8	771	290	8	1	758	1	764	3.6e-273	942.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00932.t1	A0A396J512	97.9	761	13	1	1	758	1	761	0.0e+00	1526.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene00932.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00932	MS.gene65386	PPI
MS.gene00932	MS.gene75807	PPI
MS.gene00932	MS.gene074504	PPI
MS.gene00932	MS.gene001194	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00932.t1	MTR_6g051425	28.521	284	161	6	170	412	7	289	1.31e-30	124
MS.gene00932.t1	MTR_4g067290	43.119	109	50	1	179	275	55	163	4.66e-23	99.4
MS.gene00932.t1	MTR_4g067290	33.333	150	70	3	28	150	55	201	2.02e-16	79.7
MS.gene00932.t1	MTR_4g067290	43.119	109	50	1	179	275	55	163	4.76e-23	99.0
MS.gene00932.t1	MTR_4g067290	33.784	148	70	3	28	150	55	199	2.14e-16	79.7
MS.gene00932.t1	MTR_4g067290	43.119	109	50	1	179	275	73	181	6.86e-23	99.0
MS.gene00932.t1	MTR_4g067290	33.784	148	70	3	28	150	73	217	3.65e-16	79.3
MS.gene00932.t1	MTR_4g067290	43.119	109	50	1	179	275	75	183	7.30e-23	99.0
MS.gene00932.t1	MTR_4g067290	33.784	148	70	3	28	150	75	219	3.67e-16	79.3
MS.gene00932.t1	MTR_4g067290	43.119	109	50	1	179	275	75	183	7.33e-23	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene00932.t1	AT3G06250	59.922	771	289	9	1	758	1	764	0.0	931
MS.gene00932.t1	AT3G06250	59.922	771	289	9	1	758	1	764	0.0	931
MS.gene00932.t1	AT3G06250	59.922	771	289	9	1	758	1	764	0.0	931
MS.gene00932.t1	AT5G18960	57.106	781	306	10	1	758	14	788	0.0	890
MS.gene00932.t1	AT5G18960	57.106	781	306	10	1	758	14	788	0.0	890
MS.gene00932.t1	AT4G38180	36.480	625	347	11	178	754	71	693	5.24e-130	405
MS.gene00932.t1	AT4G38180	33.974	156	78	4	20	158	63	210	3.03e-14	77.4
MS.gene00932.t1	AT2G27110	37.261	628	364	12	149	754	16	635	1.10e-121	385
MS.gene00932.t1	AT2G27110	37.261	628	364	12	149	754	16	635	1.10e-121	385
MS.gene00932.t1	AT2G27110	40.652	460	258	6	308	754	33	490	8.67e-108	345

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Find 152 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGAACTTGAAGTAC+AGG	0.474189	2.3:-66283571	MS.gene00932:CDS
AAAAGATCATAATCATGATC+TGG	0.383971	2.3:-66283292	MS.gene00932:CDS
AAAATCACATTAGAAGTGAT+TGG	0.484311	2.3:-66283140	MS.gene00932:CDS
AAAATGCTTGAAGTAGGGAA+TGG	0.612218	2.3:-66283639	MS.gene00932:CDS
AAAGATCATAATCATGATCT+GGG	0.502626	2.3:-66283291	MS.gene00932:CDS
AACTGAACCCTTATGAATGC+TGG	0.443026	2.3:+66283804	None:intergenic
AAGAACTTGAAGTACAGGCC+AGG	0.583073	2.3:-66283566	MS.gene00932:CDS
AAGATTTGTGTGTTCGAAGG+AGG	0.548897	2.3:-66283856	MS.gene00932:CDS
AATCTGAAGAATCTTTCACT+TGG	0.577117	2.3:-66282855	MS.gene00932:CDS
AATGAGTAATGCAATTGGGG+AGG	0.656176	2.3:-66284036	MS.gene00932:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTCTAACCCTATGTA+TGG	+	chr2.3:66281907-66281926	None:intergenic	30.0%
AAAAGAAGAACTTGAAGTAC+AGG	-	chr2.3:66282323-66282342	MS.gene00932:CDS	30.0%
AATCTGAAGAATCTTTCACT+TGG	-	chr2.3:66283039-66283058	MS.gene00932:CDS	30.0%
AATGTGCCCTTTAAATAGAA+CGG	+	chr2.3:66283386-66283405	None:intergenic	30.0%
AATTCCTATGAAAGAAAGCA+TGG	-	chr2.3:66283415-66283434	MS.gene00932:CDS	30.0%
ATTACCATTATCAACTTCCA+TGG	+	chr2.3:66282841-66282860	None:intergenic	30.0%
ATTCCAACAAAAGTAGCAAA+TGG	+	chr2.3:66282969-66282988	None:intergenic	30.0%
TAAAATTGGTAGGCTTCATT+AGG	+	chr2.3:66282387-66282406	None:intergenic	30.0%
TAAGTGTGGAAATGATGATA+TGG	-	chr2.3:66283721-66283740	MS.gene00932:CDS	30.0%
TATATGATGTATCTACAACG+AGG	+	chr2.3:66282926-66282945	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	66281820	66284096	66281820	ID=MS.gene00932
chr2.3	mRNA	66281820	66284096	66281820	ID=MS.gene00932.t1;Parent=MS.gene00932
chr2.3	exon	66281820	66284096	66281820	ID=MS.gene00932.t1.exon1;Parent=MS.gene00932.t1
chr2.3	CDS	66281820	66284096	66281820	ID=cds.MS.gene00932.t1;Parent=MS.gene00932.t1

Gene Sequence

>MS.gene00932

ATGATTGTAAAGGAGCATCCTGTTGGTACTGAACTGGTAATGAGTAATGCAATTGGGGAGGAGGAAATTGATTTTTCTTGTGATCCATACATAGGGTTAGAGTTTTTTAATGCGGATGACGCACTTAAGTTTTATATATCTTATGGTAATCGAATGGGATTTAAAGTTCGGATTGGTCAACTTTATCGATCGAGAACTAATGGGTCTGTTTCTTCTAGAAGATTTGTGTGTTCGAAGGAGGGACATCAGCTCAGTTCAAGAACTGGTTGTCCAGCATTCATAAGGGTTCAGTTAAATGATTCTGGAAAGTGGGTTGTTGATCATTTTCATAAGGATCATAACCACACTCTTGAAAATGAAAGTGAAAGTTTCGCTCCAACATTGCAGCCAAAAGCTATCGAGTCTTCTACTGAAGTCACTCGCAAGCCAAGGAAGAAAATGCTTGAAGTAGGGAATGGTGAACCTATTTCTCCCTTTGGTGTTATTAATTTCAAGCGTATGAGAAAAGAAGAACTTGAAGTACAGGCCAGGATCGAACCATATGTTGGTCAAGAGTTCAGTACTCCTAATGAAGCCTACCAATTTTACCATGCTCATGCAGCATACTTGGGTTTTGGAATTCGAGTCGGTCAATTGTTTCGTTCTAAAAATGACGGATCAATTACATCTCGACGCTTTGTGTGCTCAAAAGAAGGGTTCCAGCACCCTTCAAGAGTTGGCTGTAAGGCTTATTTGAGGATTAAGAATCAACCATCAGGAAAGTGGGTAGTCGACCGTCTTGAAAAAGATCATAATCATGATCTGGGCCTTGGAACGGAACGTAAGACAAAAAGTCTTCCTGCTTCCAACATTTTGACCGAGGAGGTAAACACTGAATTGGTGAATGGCGACATATTTAGGATAGATAACTACCCTGTCCTAAGAGGAGCTAGACAAAATCACATTAGAAGTGATTGGTACAACATGCTTTTAGAGTATTTTCAGTCAAGGCAAGCAGAAGATACAGGATTCTTTTATGCCATGGAAGTTGATAATGGTAATTGCATGAGCATATTTTGGGCTGACGGAAGATCTAGATACTCATGTAGTCAGTTTGGCGATGTCCTCGTTGTAGATACATCATATAGAAAGAGTGTTTATATGGTACCATTTGCTACTTTTGTTGGAATTAACCACCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGGTAAGAGCAATGTCAGGCCGGCAGCCTTTGTCAGTAATAGCTGATCAAGATGTTTCAATCCAGAGGGCAATAGCAAAAGTCTTTCCGGTAACCAATCATCGCTTTTCGTTGTGGCAAATTAATGCAAAGGAACAAGAGCTCGCCGGTCTGATGGGTAATGGGTTCACTAAAGATTATGAAAAGTGTGTTTACCAGAGCCAGACAGTCGATGAATTTGACGCCTCGTGGAGTGCTTTACTCGTCAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAAATGTATGAGAAGCGTGCATCCTGGGTTCCGTTCTATTTAAAGGGCACATTTTCTGCTGGAATTCCTATGAAAGAAAGCATGGAATCATTCTTTGGTGGAAGTTTAAATGGCCAAACACCTCTCACAGAGTTCATTCCGCGTTATGAAAGAGGTCTCGAGCGACGTCGTGAAGAAGAAAGAAAAGAGGATTTTAATACTTCCAATTTTCAAACTTTTTTGCAAACAAAAGAGCCAGTAGAAGAACAGTGCAGAAGACTTTACACTCTTGCAGTATTCAAAGTATTTCAGAAAGAGCTTTTGCAGTGCTTTAGTTATCTTGGATTTAAAATCTATGAAGAAGGGTCCCTCAGCAGATATTTGGTGCGTAAGTGTGGAAATGATGATATGGTGAAGCATGTAGTTACATTCAATGCATCCAATCTTGACATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTTCAAATATTGGAAGTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCTGAGGATGGTGTTTTTCCTGACATAGGATCATGGAGTAGCTCTCAGGAGTTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACAGCATCTAAATACATAGATGCTGGTGCATCATCAATTGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGTGGGAGAAAACTGTGTTGGCACAGGTGA

Protein sequence

>MS.gene00932.t1

MIVKEHPVGTELVMSNAIGEEEIDFSCDPYIGLEFFNADDALKFYISYGNRMGFKVRIGQLYRSRTNGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHTLENESESFAPTLQPKAIESSTEVTRKPRKKMLEVGNGEPISPFGVINFKRMRKEELEVQARIEPYVGQEFSTPNEAYQFYHAHAAYLGFGIRVGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCKAYLRIKNQPSGKWVVDRLEKDHNHDLGLGTERKTKSLPASNILTEEVNTELVNGDIFRIDNYPVLRGARQNHIRSDWYNMLLEYFQSRQAEDTGFFYAMEVDNGNCMSIFWADGRSRYSCSQFGDVLVVDTSYRKSVYMVPFATFVGINHHKQPVLLGCALIADESEESFTWLFQTWVRAMSGRQPLSVIADQDVSIQRAIAKVFPVTNHRFSLWQINAKEQELAGLMGNGFTKDYEKCVYQSQTVDEFDASWSALLVKYGLKDNAWLKEMYEKRASWVPFYLKGTFSAGIPMKESMESFFGGSLNGQTPLTEFIPRYERGLERRREEERKEDFNTSNFQTFLQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIYEEGSLSRYLVRKCGNDDMVKHVVTFNASNLDISCSCQMFEYEGVLCRHVLRVFQILEVREVPSRYILHRWTRNAEDGVFPDIGSWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR