AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002282

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002282.t1 MTR_2g010450 95.751 353 15 0 1 353 1 353 0.0 703
MS.gene002282.t1 MTR_4g092700 55.587 349 111 10 7 353 27 333 4.27e-115 337
MS.gene002282.t1 MTR_4g097940 39.368 348 175 13 5 345 2 320 3.34e-59 194
MS.gene002282.t1 MTR_5g014600 38.192 343 166 7 20 346 18 330 1.53e-58 192
MS.gene002282.t1 MTR_4g097920 39.368 348 175 13 5 345 2 320 3.64e-58 191
MS.gene002282.t1 MTR_5g014520 52.632 190 87 2 166 353 144 332 6.40e-55 183
MS.gene002282.t1 MTR_4g097920 41.254 303 151 11 44 345 29 305 2.31e-53 178
MS.gene002282.t1 MTR_0250s0040 45.813 203 106 2 151 353 65 263 8.93e-51 170
MS.gene002282.t1 MTR_5g014640 34.393 346 199 10 5 348 2 321 1.58e-50 171
MS.gene002282.t1 MTR_0246s0020 44.643 224 107 5 138 353 163 377 3.24e-49 169
MS.gene002282.t1 MTR_4g097950 54.749 179 69 4 177 346 70 245 1.51e-48 164
MS.gene002282.t1 MTR_8g009020 42.081 221 116 4 134 346 102 318 2.59e-48 166
MS.gene002282.t1 MTR_6g047570 46.154 195 100 4 161 353 143 334 3.40e-47 163
MS.gene002282.t1 MTR_5g014560 42.793 222 117 4 131 348 86 301 1.78e-46 160
MS.gene002282.t1 MTR_2g104550 50.847 177 81 2 173 346 134 307 2.73e-46 160
MS.gene002282.t1 MTR_0011s0210 47.059 187 82 4 175 353 181 358 9.15e-46 160
MS.gene002282.t1 MTR_0011s0260 45.810 179 96 1 175 353 181 358 2.43e-45 159
MS.gene002282.t1 MTR_0246s0020 45.771 201 92 5 138 330 163 354 6.74e-44 155
MS.gene002282.t1 MTR_4g067010 43.548 186 99 2 168 353 140 319 6.14e-43 152
MS.gene002282.t1 MTR_4g098035 39.904 208 107 3 156 353 141 340 1.60e-41 148
MS.gene002282.t1 MTR_0246s0050 39.904 208 107 3 156 353 120 319 1.92e-41 147
MS.gene002282.t1 MTR_4g009540 45.161 186 93 3 168 346 143 326 1.75e-39 142
MS.gene002282.t1 MTR_4g009110 46.067 178 90 2 173 346 170 345 1.86e-39 143
MS.gene002282.t1 MTR_2g104490 46.927 179 92 2 173 351 133 308 2.11e-39 142
MS.gene002282.t1 MTR_4g066460 41.627 209 111 3 151 352 122 326 7.55e-39 141
MS.gene002282.t1 MTR_2g104560 42.697 178 89 5 174 346 51 220 8.27e-39 138
MS.gene002282.t1 MTR_4g066380 40.952 210 112 3 151 353 120 324 1.58e-37 137
MS.gene002282.t1 MTR_2g104490 46.386 166 86 2 173 338 133 295 1.73e-36 134
MS.gene002282.t1 MTR_2g104650 43.094 181 100 2 168 346 85 264 7.68e-36 132
MS.gene002282.t1 MTR_8g009010 40.230 174 66 2 174 346 131 267 2.69e-35 131
MS.gene002282.t1 MTR_4g009540 45.294 170 84 3 168 330 143 310 1.22e-34 129
MS.gene002282.t1 MTR_8g069740 43.636 165 88 4 168 329 103 265 6.26e-34 126
MS.gene002282.t1 MTR_2g104590 39.773 176 83 3 173 346 65 219 2.79e-32 121
MS.gene002282.t1 MTR_7g080780 41.860 172 90 1 175 346 150 311 3.71e-31 120
MS.gene002282.t1 MTR_7g080780 41.860 172 90 1 175 346 163 324 5.37e-31 120
MS.gene002282.t1 MTR_2g104530 38.150 173 94 3 178 346 106 269 9.21e-30 115
MS.gene002282.t1 MTR_2g104500 38.728 173 94 4 177 346 104 267 3.09e-29 114
MS.gene002282.t1 MTR_7g451650 38.816 152 82 2 200 351 57 197 1.38e-25 102
MS.gene002282.t1 MTR_4g009510 35.260 173 99 4 180 351 45 205 4.15e-24 98.6
MS.gene002282.t1 MTR_7g050350 37.671 146 80 2 206 351 1 135 7.43e-24 95.9
MS.gene002282.t1 MTR_7g451650 37.671 146 80 2 206 351 1 135 7.43e-24 95.9
MS.gene002282.t1 MTR_4g009420 37.500 152 76 2 200 351 65 197 2.10e-23 96.3
MS.gene002282.t1 MTR_5g014550 41.732 127 73 1 207 333 54 179 1.12e-22 94.4
MS.gene002282.t1 MTR_6g047550 44.262 122 62 3 130 249 127 244 6.65e-22 94.0
MS.gene002282.t1 MTR_7g451650 37.778 135 73 2 200 334 57 180 2.20e-21 90.9
MS.gene002282.t1 MTR_1g072320 34.395 157 93 3 177 324 470 625 7.49e-20 91.3
MS.gene002282.t1 MTR_4g009420 36.296 135 67 2 200 334 65 180 5.88e-19 84.3
MS.gene002282.t1 MTR_8g027495 32.353 136 83 2 177 312 458 584 3.52e-16 80.1
MS.gene002282.t1 MTR_7g117670 31.618 136 84 2 177 312 402 528 4.89e-16 79.7
MS.gene002282.t1 MTR_3g104100 29.032 155 101 2 179 324 197 351 1.51e-15 77.4
MS.gene002282.t1 MTR_8g067280 33.143 175 106 3 150 313 434 608 1.51e-15 78.2
MS.gene002282.t1 MTR_5g030430 31.333 150 87 3 177 313 493 639 4.92e-15 76.6
MS.gene002282.t1 MTR_3g030700 29.189 185 120 4 149 329 175 352 1.12e-14 74.7
MS.gene002282.t1 MTR_8g024790 32.168 143 85 3 177 313 291 427 1.12e-14 75.1
MS.gene002282.t1 MTR_3g498695 29.032 155 101 2 179 324 300 454 1.30e-14 75.1
MS.gene002282.t1 MTR_3g498695 28.846 156 102 2 178 324 299 454 1.31e-14 75.1
MS.gene002282.t1 MTR_7g096350 54.386 57 26 0 177 233 355 411 8.38e-14 72.8
MS.gene002282.t1 MTR_8g024770 27.711 166 99 3 177 330 279 435 1.70e-13 71.6
MS.gene002282.t1 MTR_7g083900 28.302 159 99 3 179 324 288 444 3.06e-13 70.9
MS.gene002282.t1 MTR_7g083900 28.302 159 99 3 179 324 288 444 3.08e-13 70.9
MS.gene002282.t1 MTR_2g081040 29.032 155 101 3 179 324 179 333 1.21e-12 68.6
MS.gene002282.t1 MTR_8g064700 25.843 178 110 5 166 327 227 398 1.36e-11 65.9
MS.gene002282.t1 MTR_8g098275 25.962 208 121 5 174 352 241 444 3.23e-11 64.7
MS.gene002282.t1 MTR_8g098275 25.962 208 121 5 174 352 305 508 5.50e-11 63.9
MS.gene002282.t1 MTR_1g112680 38.710 93 53 2 168 257 309 400 6.35e-11 63.9
MS.gene002282.t1 MTR_8g098275 25.962 208 121 5 174 352 398 601 6.44e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002282.t1 AT4G37850 56.757 185 72 4 173 353 148 328 9.79e-60 196
MS.gene002282.t1 AT4G37850 56.757 185 72 4 173 353 148 328 9.79e-60 196
MS.gene002282.t1 AT2G22760 49.153 177 87 3 175 348 117 293 1.11e-48 166
MS.gene002282.t1 AT2G22770 46.809 188 86 2 177 350 132 319 6.18e-45 157
MS.gene002282.t1 AT2G22750 50.811 185 84 3 173 352 122 304 3.08e-43 152
MS.gene002282.t1 AT2G22750 50.811 185 84 3 173 352 150 332 5.79e-43 152
MS.gene002282.t1 AT2G22750 50.811 185 84 3 173 352 146 328 6.23e-43 152
MS.gene002282.t1 AT2G22750 50.811 185 83 4 173 352 122 303 6.26e-42 148
MS.gene002282.t1 AT2G22760 47.468 158 81 2 175 330 117 274 1.23e-41 147
MS.gene002282.t1 AT2G22750 50.811 185 83 4 173 352 150 331 1.32e-41 148
MS.gene002282.t1 AT1G32640 36.025 161 87 4 165 313 432 588 1.19e-18 87.8
MS.gene002282.t1 AT5G46760 34.783 161 101 2 177 334 415 574 3.42e-17 83.2
MS.gene002282.t1 AT2G46510 59.649 57 23 0 177 233 395 451 1.12e-16 81.6
MS.gene002282.t1 AT4G16430 37.143 140 70 5 118 241 247 384 3.04e-16 80.1
MS.gene002282.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.02e-16 79.0
MS.gene002282.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.02e-16 79.0
MS.gene002282.t1 AT1G01260 52.174 69 32 1 168 235 423 491 8.02e-16 79.0
MS.gene002282.t1 AT4G17880 31.013 158 107 2 177 334 416 571 1.29e-15 78.6
MS.gene002282.t1 AT1G12860 30.921 152 100 3 178 324 268 419 2.09e-14 74.3
MS.gene002282.t1 AT1G12860 31.126 151 99 3 179 324 269 419 2.63e-14 74.3
MS.gene002282.t1 AT3G26744 30.128 156 100 3 178 324 308 463 2.72e-13 71.2
MS.gene002282.t1 AT3G26744 30.128 156 100 3 178 324 308 463 3.02e-13 70.9
MS.gene002282.t1 AT3G26744 30.128 156 100 3 178 324 308 463 3.02e-13 70.9
MS.gene002282.t1 AT3G26744 30.128 156 100 3 178 324 308 463 3.02e-13 70.9
MS.gene002282.t1 AT5G57150 30.000 170 97 5 173 327 51 213 1.07e-12 67.0
MS.gene002282.t1 AT5G57150 30.000 170 97 5 173 327 50 212 1.18e-12 67.0
MS.gene002282.t1 AT5G57150 30.000 170 97 5 173 327 51 213 1.31e-12 67.0
MS.gene002282.t1 AT4G09820 31.343 134 65 3 178 308 364 473 1.42e-12 68.9
MS.gene002282.t1 AT5G57150 30.000 170 97 5 173 327 51 213 1.62e-12 67.4
MS.gene002282.t1 AT2G16910 27.879 165 90 4 178 317 315 475 1.88e-12 68.9
MS.gene002282.t1 AT5G41315 28.824 170 99 3 160 307 429 598 2.02e-12 68.6
MS.gene002282.t1 AT5G41315 28.824 170 99 3 160 307 424 593 2.07e-12 68.6
MS.gene002282.t1 AT5G41315 28.824 170 99 3 160 307 432 601 2.09e-12 68.6
MS.gene002282.t1 AT5G57150 30.000 170 97 5 173 327 50 212 2.30e-12 66.6
MS.gene002282.t1 AT3G61950 30.496 141 87 3 177 311 128 263 4.51e-12 66.2
MS.gene002282.t1 AT4G00870 46.875 64 34 0 178 241 250 313 6.09e-12 67.0
MS.gene002282.t1 AT3G61950 30.496 141 87 3 177 311 179 314 8.49e-12 65.9
MS.gene002282.t1 AT3G61950 30.496 141 87 3 177 311 128 263 8.93e-12 65.5
MS.gene002282.t1 AT3G61950 30.496 141 87 3 177 311 179 314 1.64e-11 65.1
MS.gene002282.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.84e-11 65.9
MS.gene002282.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.84e-11 65.9
MS.gene002282.t1 AT1G63650 27.564 156 96 3 169 307 397 552 1.84e-11 65.9
MS.gene002282.t1 AT4G29930 27.778 180 107 6 178 349 55 219 1.95e-11 63.5
MS.gene002282.t1 AT4G29930 28.161 174 111 4 178 349 55 216 3.14e-11 62.8
MS.gene002282.t1 AT4G29930 25.773 194 119 3 178 349 55 245 5.47e-11 62.8

Find 52 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTGCTTCAATTTC+AGG 0.082646 2.3:+72949684 None:intergenic
AATAAATATCTTACCATTTC+AGG 0.175967 2.3:+72951201 None:intergenic
AACTTAACTGCTTCTGCTTT+TGG 0.208058 2.3:-72950893 MS.gene002282:CDS
AGCAGAAGCAGTTAAGTTAT+TGG 0.221213 2.3:+72950898 None:intergenic
ATGGACAAAGCTTCTGTTCT+TGG 0.230457 2.3:-72949879 MS.gene002282:CDS
AATAGCAGTTCCTTGACTTT+TGG 0.241912 2.3:-72949564 MS.gene002282:CDS
TTTCACCGGTCTTTCGTTTC+CGG 0.252447 2.3:+72950796 None:intergenic
GTTGTTGAAGTTTGGATTAT+TGG 0.283921 2.3:+72950844 None:intergenic
ATCACTCAAGGTAACTTGTT+TGG 0.298879 2.3:-72950581 MS.gene002282:CDS
TTTGATACCTTCTTTAGGTT+TGG 0.325711 2.3:+72950407 None:intergenic
CATTATTTGATACCTTCTTT+AGG 0.327577 2.3:+72950402 None:intergenic
ATGAACTCTGCAGGGGATAA+TGG 0.331301 2.3:-72950972 MS.gene002282:intron
TCACTCAAGGTAACTTGTTT+GGG 0.334384 2.3:-72950580 MS.gene002282:CDS
CTGTTCTTGGAGAAGCTATA+AGG 0.338206 2.3:-72949866 MS.gene002282:CDS
TATCAGAGGGTTACCTGAAA+TGG 0.381568 2.3:-72951214 MS.gene002282:intron
TTTCAGGATGAGTTCTCATA+TGG 0.392590 2.3:-72951247 None:intergenic
TAAAATTACCTGAGCAATGA+TGG 0.451657 2.3:+72949521 None:intergenic
TTGAATTACACAAATCAGTT+GGG 0.457187 2.3:-72950674 MS.gene002282:CDS
TCAAACAATGTAGTCTTATG+AGG 0.459967 2.3:+72949649 None:intergenic
TATAAGGTACTTAAAGCAAA+TGG 0.467859 2.3:-72949850 MS.gene002282:CDS
GAGCAATGATGGTTATATCA+AGG 0.480152 2.3:+72949532 None:intergenic
TTTGAATTACACAAATCAGT+TGG 0.490344 2.3:-72950675 MS.gene002282:CDS
TATTGGTATCAATAGAGCTT+AGG 0.492237 2.3:+72950915 None:intergenic
TTATTTCTTAACTGTTTCAC+CGG 0.499185 2.3:+72950782 None:intergenic
AACAGTTAAGAAATAACAGC+TGG 0.500916 2.3:-72950775 MS.gene002282:CDS
TGATATAACCATCATTGCTC+AGG 0.502657 2.3:-72949529 MS.gene002282:intron
GGACACACCATCTCAGACTT+AGG 0.503073 2.3:+72950641 None:intergenic
AGAGAAAGTGAGTGTTCTTG+AGG 0.506732 2.3:-72949826 MS.gene002282:CDS
CTTGAACAGCTTTAAAGACA+TGG 0.514024 2.3:+72950549 None:intergenic
TCATATTGTGTATCTGATGT+TGG 0.522543 2.3:+72950734 None:intergenic
AGCTTAGGTGATTATTGAAG+TGG 0.522860 2.3:+72950930 None:intergenic
TGGCAATTTGCAGATGGATG+TGG 0.531836 2.3:-72949138 MS.gene002282:intron
TGCATGGAGACTTCGCCTAC+CGG 0.553544 2.3:-72950815 MS.gene002282:CDS
TCTTGTTCCAAACCTAAAGA+AGG 0.556354 2.3:-72950414 MS.gene002282:intron
CTACATTGTTTGAAGAGTCA+AGG 0.557167 2.3:-72949639 MS.gene002282:CDS
TGTGTAATTCAAATCAGCAA+AGG 0.572771 2.3:+72950685 None:intergenic
GCAAACATGTTGATCACTCA+AGG 0.574022 2.3:-72950593 MS.gene002282:CDS
AGCAATGATGGTTATATCAA+GGG 0.578216 2.3:+72949533 None:intergenic
CTTCAACAACAAAACATGCA+TGG 0.578541 2.3:-72950831 MS.gene002282:CDS
CAGACAGAGCGATGAATCGT+TGG 0.578725 2.3:+72950438 None:intergenic
ACCGGTCTTTCGTTTCCGGT+AGG 0.581772 2.3:+72950800 None:intergenic
TGGAGATTTCATCTATCAGA+GGG 0.587975 2.3:-72951227 MS.gene002282:CDS
GAAAGTGAGTGTTCTTGAGG+AGG 0.588414 2.3:-72949823 MS.gene002282:CDS
ATTGAAGCCTAAGTCTGAGA+TGG 0.590244 2.3:-72950648 MS.gene002282:CDS
ATGGAGATTTCATCTATCAG+AGG 0.606668 2.3:-72951228 MS.gene002282:CDS
GGTGAAATTCCCAAAAGTCA+AGG 0.621239 2.3:+72949554 None:intergenic
GCCTACCGGAAACGAAAGAC+CGG 0.631389 2.3:-72950801 MS.gene002282:CDS
TATTGTGTATCTGATGTTGG+AGG 0.636554 2.3:+72950737 None:intergenic
AACTCTGCAGGGGATAATGG+AGG 0.663168 2.3:-72950969 MS.gene002282:intron
ATGATCACATCGTAGCGGAG+AGG 0.690331 2.3:-72950481 MS.gene002282:CDS
TGACAGTGAAGGATCTTGTG+AGG 0.718300 2.3:-72949106 MS.gene002282:CDS
AGCTCATGATCACATCGTAG+CGG 0.723921 2.3:-72950486 MS.gene002282:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTAGTTAATTATCA+GGG - chr2.3:72950124-72950143 MS.gene002282:intron 10.0%
!! TCCAATATTCATATAAAATT+AGG + chr2.3:72951149-72951168 None:intergenic 15.0%
!! TTAACATTAGATATACATAT+AGG - chr2.3:72950383-72950402 MS.gene002282:intron 15.0%
!!! AAAAGTATATATTTCATCTT+AGG - chr2.3:72949963-72949982 MS.gene002282:intron 15.0%
!!! CTTTTTTAATAGTTTATCTT+AGG + chr2.3:72950249-72950268 None:intergenic 15.0%
!!! GTAATATTTCAATTTTGATT+AGG - chr2.3:72950027-72950046 MS.gene002282:intron 15.0%
!!! GTTATTTTTAGTTAATTATC+AGG - chr2.3:72950123-72950142 MS.gene002282:intron 15.0%
!!! TCCTAATTTTATATGAATAT+TGG - chr2.3:72951145-72951164 MS.gene002282:intron 15.0%
!! AATAAATATCTTACCATTTC+AGG + chr2.3:72949115-72949134 None:intergenic 20.0%
!! AATTGTGTATCAAGTATTAT+TGG - chr2.3:72950101-72950120 MS.gene002282:intron 20.0%
!! ATATGAATATTGGAATTGTT+TGG - chr2.3:72951155-72951174 MS.gene002282:intron 20.0%
!! ATTCATATAAAATTAGGACT+TGG + chr2.3:72951143-72951162 None:intergenic 20.0%
!!! TATATACTTTTGACAATATG+AGG + chr2.3:72949954-72949973 None:intergenic 20.0%
! CATTATTTGATACCTTCTTT+AGG + chr2.3:72949914-72949933 None:intergenic 25.0%
! TTAAATCTCCATGTGTTAAA+TGG + chr2.3:72949234-72949253 None:intergenic 25.0%
! TTGAAGTGGTGTAAAAAATT+AGG + chr2.3:72949372-72949391 None:intergenic 25.0%
! TTGAATTACACAAATCAGTT+GGG - chr2.3:72949639-72949658 MS.gene002282:CDS 25.0%
! TTTGAATTACACAAATCAGT+TGG - chr2.3:72949638-72949657 MS.gene002282:CDS 25.0%
!! GAGATTTAAAACATGGTATT+TGG - chr2.3:72949245-72949264 MS.gene002282:intron 25.0%
!! TATAAGGTACTTAAAGCAAA+TGG - chr2.3:72950463-72950482 MS.gene002282:CDS 25.0%
!! TTATTTCTTAACTGTTTCAC+CGG + chr2.3:72949534-72949553 None:intergenic 25.0%
!! TTTTTGAACCATTTAACACA+TGG - chr2.3:72949223-72949242 MS.gene002282:intron 25.0%
!!! CTAAAGAAATTTTAACCAAG+AGG + chr2.3:72950163-72950182 None:intergenic 25.0%
!!! GATTGATTGTTATTTGTTGA+CGG + chr2.3:72951028-72951047 None:intergenic 25.0%
AACAGTTAAGAAATAACAGC+TGG - chr2.3:72949538-72949557 MS.gene002282:CDS 30.0%
AACATCGTGATATCTTTGTT+AGG - chr2.3:72950005-72950024 MS.gene002282:intron 30.0%
ACAAAAAAGGAAGAAAACTG+TGG - chr2.3:72950514-72950533 MS.gene002282:CDS 30.0%
AGCAATGATGGTTATATCAA+GGG + chr2.3:72950783-72950802 None:intergenic 30.0%
CAAAATCTTGCTTCAATTTC+AGG + chr2.3:72950632-72950651 None:intergenic 30.0%
GTTGTTGAAGTTTGGATTAT+TGG + chr2.3:72949472-72949491 None:intergenic 30.0%
TAAAATTACCTGAGCAATGA+TGG + chr2.3:72950795-72950814 None:intergenic 30.0%
TATTGGTATCAATAGAGCTT+AGG + chr2.3:72949401-72949420 None:intergenic 30.0%
TCATATTGTGTATCTGATGT+TGG + chr2.3:72949582-72949601 None:intergenic 30.0%
TGTGTAATTCAAATCAGCAA+AGG + chr2.3:72949631-72949650 None:intergenic 30.0%
! AATGTTTTATGAACTCTGCA+GGG - chr2.3:72949333-72949352 MS.gene002282:intron 30.0%
! ACACATGGAGATTTAAAACA+TGG - chr2.3:72949238-72949257 MS.gene002282:intron 30.0%
! ATGTTTTATAGTTCCTCGTA+AGG + chr2.3:72949990-72950009 None:intergenic 30.0%
! TAATGTTTTATGAACTCTGC+AGG - chr2.3:72949332-72949351 MS.gene002282:intron 30.0%
! TGAGCTTGAGAGATTTTATT+AGG + chr2.3:72949813-72949832 None:intergenic 30.0%
! TTTGATACCTTCTTTAGGTT+TGG + chr2.3:72949909-72949928 None:intergenic 30.0%
! TTTTACATACTCATGATTCC+TGG + chr2.3:72950083-72950102 None:intergenic 30.0%
!! TCAAACAATGTAGTCTTATG+AGG + chr2.3:72950667-72950686 None:intergenic 30.0%
!!! CATGTTTTGTTGTTGAAGTT+TGG + chr2.3:72949480-72949499 None:intergenic 30.0%
!!! CATGTTTTTTATGACAAACC+AGG - chr2.3:72950062-72950081 MS.gene002282:intron 30.0%
!!! GTACTAGTGTTATCGATTTT+CGG + chr2.3:72949696-72949715 None:intergenic 30.0%
AGCAGAAGCAGTTAAGTTAT+TGG + chr2.3:72949418-72949437 None:intergenic 35.0%
AGCTTAGGTGATTATTGAAG+TGG + chr2.3:72949386-72949405 None:intergenic 35.0%
ATGGAGATTTCATCTATCAG+AGG - chr2.3:72949085-72949104 MS.gene002282:CDS 35.0%
ATTGTTTGGCAATTTGCAGA+TGG - chr2.3:72951169-72951188 MS.gene002282:intron 35.0%
CCACAAAAATTCAGAAGCTA+AGG + chr2.3:72949290-72949309 None:intergenic 35.0%
CTACATTGTTTGAAGAGTCA+AGG - chr2.3:72950674-72950693 MS.gene002282:CDS 35.0%
CTTCAACAACAAAACATGCA+TGG - chr2.3:72949482-72949501 MS.gene002282:intron 35.0%
GAGCAATGATGGTTATATCA+AGG + chr2.3:72950784-72950803 None:intergenic 35.0%
TATTGTGTATCTGATGTTGG+AGG + chr2.3:72949579-72949598 None:intergenic 35.0%
TCTTGTTCCAAACCTAAAGA+AGG - chr2.3:72949899-72949918 MS.gene002282:intron 35.0%
TGATATAACCATCATTGCTC+AGG - chr2.3:72950784-72950803 MS.gene002282:CDS 35.0%
TGGAGATTTCATCTATCAGA+GGG - chr2.3:72949086-72949105 MS.gene002282:CDS 35.0%
TGGTAGCTAGGACTAATTAA+GGG - chr2.3:72949307-72949326 MS.gene002282:intron 35.0%
TTCTTGAGGAGGAACAAAAA+AGG - chr2.3:72950501-72950520 MS.gene002282:CDS 35.0%
! AACTTAACTGCTTCTGCTTT+TGG - chr2.3:72949420-72949439 MS.gene002282:intron 35.0%
! AATAGCAGTTCCTTGACTTT+TGG - chr2.3:72950749-72950768 MS.gene002282:CDS 35.0%
! ATAGCAGTTCCTTGACTTTT+GGG - chr2.3:72950750-72950769 MS.gene002282:CDS 35.0%
! ATGTTTTATGAACTCTGCAG+GGG - chr2.3:72949334-72949353 MS.gene002282:intron 35.0%
! CCTTAGCTTCTGAATTTTTG+TGG - chr2.3:72949287-72949306 MS.gene002282:intron 35.0%
! TCTGAATTTTTGTGGTAGCT+AGG - chr2.3:72949295-72949314 MS.gene002282:intron 35.0%
! TTCAGTTTTCTGCATACAGA+TGG - chr2.3:72950415-72950434 MS.gene002282:CDS 35.0%
!! ATCACTCAAGGTAACTTGTT+TGG - chr2.3:72949732-72949751 MS.gene002282:CDS 35.0%
!! CTTGAACAGCTTTAAAGACA+TGG + chr2.3:72949767-72949786 None:intergenic 35.0%
!! TCACTCAAGGTAACTTGTTT+GGG - chr2.3:72949733-72949752 MS.gene002282:CDS 35.0%
AGAGAAAGTGAGTGTTCTTG+AGG - chr2.3:72950487-72950506 MS.gene002282:CDS 40.0%
ATACCAACTAACTCGGATAG+AGG - chr2.3:72950194-72950213 MS.gene002282:intron 40.0%
ATGGACAAAGCTTCTGTTCT+TGG - chr2.3:72950434-72950453 MS.gene002282:CDS 40.0%
ATTGAAGCCTAAGTCTGAGA+TGG - chr2.3:72949665-72949684 MS.gene002282:CDS 40.0%
CAAATGTCATCTTTCCAAGC+AGG + chr2.3:72950332-72950351 None:intergenic 40.0%
CCTCGATATACCAACTAACT+CGG - chr2.3:72950187-72950206 MS.gene002282:intron 40.0%
CTGTTCTTGGAGAAGCTATA+AGG - chr2.3:72950447-72950466 MS.gene002282:CDS 40.0%
GCAAACATGTTGATCACTCA+AGG - chr2.3:72949720-72949739 MS.gene002282:CDS 40.0%
GGTGAAATTCCCAAAAGTCA+AGG + chr2.3:72950762-72950781 None:intergenic 40.0%
GTGGTAGCTAGGACTAATTA+AGG - chr2.3:72949306-72949325 MS.gene002282:intron 40.0%
TATCAGAGGGTTACCTGAAA+TGG - chr2.3:72949099-72949118 MS.gene002282:CDS 40.0%
TTTCATCTTAGGTCCTTACG+AGG - chr2.3:72949974-72949993 MS.gene002282:intron 40.0%
TTTCCTCTATCCGAGTTAGT+TGG + chr2.3:72950200-72950219 None:intergenic 40.0%
! CGAGTTAGTTGGTATATCGA+GGG + chr2.3:72950189-72950208 None:intergenic 40.0%
! GGAATTTTGCATGACAGTGA+AGG - chr2.3:72951196-72951215 MS.gene002282:intron 40.0%
AGCTCATGATCACATCGTAG+CGG - chr2.3:72949827-72949846 MS.gene002282:CDS 45.0%
ATGAACTCTGCAGGGGATAA+TGG - chr2.3:72949341-72949360 MS.gene002282:intron 45.0%
GAAAGTGAGTGTTCTTGAGG+AGG - chr2.3:72950490-72950509 MS.gene002282:CDS 45.0%
GGTTTGAACTCTAGACCTCT+TGG - chr2.3:72950145-72950164 MS.gene002282:intron 45.0%
TGACAGTGAAGGATCTTGTG+AGG - chr2.3:72951207-72951226 MS.gene002282:intron 45.0%
TGGCAATTTGCAGATGGATG+TGG - chr2.3:72951175-72951194 MS.gene002282:intron 45.0%
TTTCACCGGTCTTTCGTTTC+CGG + chr2.3:72949520-72949539 None:intergenic 45.0%
! CCGAGTTAGTTGGTATATCG+AGG + chr2.3:72950190-72950209 None:intergenic 45.0%
!! AGGTAGCTCAGTTGGTAAGT+TGG + chr2.3:72950312-72950331 None:intergenic 45.0%
!! GGTAGCTCAGTTGGTAAGTT+GGG + chr2.3:72950311-72950330 None:intergenic 45.0%
!! GTAGCTCAGTTGGTAAGTTG+GGG + chr2.3:72950310-72950329 None:intergenic 45.0%
CAGACAGAGCGATGAATCGT+TGG + chr2.3:72949878-72949897 None:intergenic 50.0%
GGACACACCATCTCAGACTT+AGG + chr2.3:72949675-72949694 None:intergenic 50.0%
TACCAACTGAGCTACCTGCT+TGG - chr2.3:72950315-72950334 MS.gene002282:intron 50.0%
TTCCAAGCAGGTAGCTCAGT+TGG + chr2.3:72950320-72950339 None:intergenic 50.0%
! AACTCTGCAGGGGATAATGG+AGG - chr2.3:72949344-72949363 MS.gene002282:intron 50.0%
! ATGATCACATCGTAGCGGAG+AGG - chr2.3:72949832-72949851 MS.gene002282:CDS 50.0%
! GTAAGTTGGGGTCAGCTACA+TGG + chr2.3:72950298-72950317 None:intergenic 50.0%
ACCGGTCTTTCGTTTCCGGT+AGG + chr2.3:72949516-72949535 None:intergenic 55.0%
GCCTACCGGAAACGAAAGAC+CGG - chr2.3:72949512-72949531 MS.gene002282:intron 55.0%
TGCATGGAGACTTCGCCTAC+CGG - chr2.3:72949498-72949517 MS.gene002282:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 72949073 72951262 72949073 ID=MS.gene002282
chr2.3 mRNA 72949073 72951262 72949073 ID=MS.gene002282.t1;Parent=MS.gene002282
chr2.3 exon 72951215 72951262 72951215 ID=MS.gene002282.t1.exon1;Parent=MS.gene002282.t1
chr2.3 CDS 72951215 72951262 72951215 ID=cds.MS.gene002282.t1;Parent=MS.gene002282.t1
chr2.3 exon 72950415 72950981 72950415 ID=MS.gene002282.t1.exon2;Parent=MS.gene002282.t1
chr2.3 CDS 72950415 72950981 72950415 ID=cds.MS.gene002282.t1;Parent=MS.gene002282.t1
chr2.3 exon 72949530 72949901 72949530 ID=MS.gene002282.t1.exon3;Parent=MS.gene002282.t1
chr2.3 CDS 72949530 72949901 72949530 ID=cds.MS.gene002282.t1;Parent=MS.gene002282.t1
chr2.3 exon 72949073 72949147 72949073 ID=MS.gene002282.t1.exon4;Parent=MS.gene002282.t1
chr2.3 CDS 72949073 72949147 72949073 ID=cds.MS.gene002282.t1;Parent=MS.gene002282.t1
Gene Sequence

>MS.gene002282

ATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGTAAGATATTTATTTTCTGTAAAAACAAAATTGAATCAATTTAGACTATTCAAGTTAAAAGTGTGAATTATTTATTATGTATGTTTACATTGACTAACTTTATTTTTGAACCATTTAACACATGGAGATTTAAAACATGGTATTTGGTTGATGAAATTTCTTTGAACCTTAGCTTCTGAATTTTTGTGGTAGCTAGGACTAATTAAGGGTATAATGTTTTATGAACTCTGCAGGGGATAATGGAGGATCCTAATTTTTTACACCACTTCAATAATCACCTAAGCTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTTCGCCTACCGGAAACGAAAGACCGGTGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCCTTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCACTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAAGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATCGTAGCGGAGAGGAAGCGTCGCGAGAAGCTTAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGGTATCAAATAATGTTGTTAATGTATTATTGCCTCATATTGTCAAAAGTATATATTTCATCTTAGGTCCTTACGAGGAACTATAAAACATCGTGATATCTTTGTTAGGTAATATTTCAATTTTGATTAGGATAAATATTAAACATGTTTTTTATGACAAACCAGGAATCATGAGTATGTAAAATTGTGTATCAAGTATTATTGGTTATTTTTAGTTAATTATCAGGGTTTGAACTCTAGACCTCTTGGTTAAAATTTCTTTAGTGTCCCTCGATATACCAACTAACTCGGATAGAGGAAAGTCAGATCACTAGAGACAGATGAAGACCTAAGATAAACTATTAAAAAAGATTTAGAGATTATAGCGTAATTTGATCCATGTAGCTGACCCCAACTTACCAACTGAGCTACCTGCTTGGAAAGATGACATTTGTGTTCAAATAATGCAGTGTCAATTTTTAAACTTAACATTAGATATACATATAGGTCTCATTTTTTCAGTTTTCTGCATACAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAAAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTATTAATGATGCTGAAAACTCTTGTTCAGACACTGATAGTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACATTGTTTGAAGAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTGAAAGTCATCAATAGCAGTTCCTTGACTTTTGGGAATTTCACCCTTGATATAACCATCATTGCTCAGGTAATTTTACGAGTAATTAATTATATTACTCTAAGCATTATGATTAATTAGTTCACACAATATAGATATTGTTTTAAGTTACATTATTTATAAAAGTAACACAAAAATGTTGATTATACAAATTAAATTAAATACTCAGTACTCACACTCATAATATGTATTGTACATGCAACATTCTATTTTTTCAAAAAATTAATTTTAATTTTAAAAAGTTTTACACCGTCAACAAATAACAATCAATCATATATGCGAATTTAAAAGCAGTTATAATGAAAAGTAAATATTTTTAATGATCTCGCAATTATGATTGATTGATCATGTAAATAAAATTACGCCAAGTCCTAATTTTATATGAATATTGGAATTGTTTGGCAATTTGCAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA
Protein sequence

>MS.gene002282.t1

MSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLSSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETSPTGNERPVKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLITQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSINDAENSCSDTDSTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVEFCMTVKDLVRKLRSAYSSFM