Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64138.t1 | XP_003615193.2 | 75.3 | 324 | 56 | 2 | 1 | 324 | 1 | 300 | 1.80E-124 | 455.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64138.t1 | Q9C7T4 | 49.6 | 345 | 123 | 10 | 1 | 321 | 1 | 318 | 4.1e-56 | 219.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64138.t1 | G7KAJ7 | 75.3 | 324 | 56 | 2 | 1 | 324 | 1 | 300 | 1.3e-124 | 455.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64138.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002282 | MS.gene64138 | PPI |
| MS.gene047441 | MS.gene64138 | PPI |
| MS.gene01262 | MS.gene64138 | PPI |
| MS.gene64138 | MS.gene90276 | PPI |
| MS.gene64138 | MS.gene053631 | PPI |
| MS.gene64138 | MS.gene02239 | PPI |
| MS.gene64138 | MS.gene028530 | PPI |
| MS.gene40107 | MS.gene64138 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64138.t1 | MTR_5g064950 | 79.630 | 324 | 42 | 2 | 1 | 324 | 1 | 300 | 0.0 | 523 |
| MS.gene64138.t1 | MTR_5g064950 | 80.137 | 292 | 35 | 1 | 1 | 292 | 1 | 269 | 3.83e-173 | 482 |
| MS.gene64138.t1 | MTR_3g099620 | 53.982 | 339 | 116 | 13 | 1 | 321 | 1 | 317 | 2.62e-102 | 303 |
| MS.gene64138.t1 | MTR_7g113830 | 44.512 | 328 | 145 | 12 | 1 | 321 | 14 | 311 | 1.14e-76 | 238 |
| MS.gene64138.t1 | MTR_8g066770 | 53.738 | 214 | 90 | 5 | 113 | 324 | 104 | 310 | 7.08e-68 | 215 |
| MS.gene64138.t1 | MTR_1g082480 | 40.176 | 341 | 161 | 9 | 1 | 319 | 14 | 333 | 2.48e-66 | 212 |
| MS.gene64138.t1 | MTR_1g082480 | 39.490 | 314 | 148 | 8 | 1 | 292 | 14 | 307 | 8.70e-58 | 189 |
| MS.gene64138.t1 | MTR_8g024210 | 44.286 | 210 | 94 | 3 | 112 | 316 | 170 | 361 | 9.71e-47 | 162 |
| MS.gene64138.t1 | MTR_0194s0050 | 40.909 | 220 | 112 | 5 | 105 | 313 | 166 | 378 | 2.72e-44 | 156 |
| MS.gene64138.t1 | MTR_2g022280 | 38.636 | 176 | 104 | 2 | 123 | 298 | 1 | 172 | 7.10e-34 | 123 |
| MS.gene64138.t1 | MTR_3g090850 | 30.000 | 300 | 160 | 10 | 46 | 298 | 19 | 315 | 1.86e-30 | 118 |
| MS.gene64138.t1 | MTR_1g028470 | 30.325 | 277 | 145 | 9 | 46 | 298 | 27 | 279 | 4.78e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64138.t1 | AT1G72210 | 47.522 | 343 | 129 | 11 | 1 | 319 | 1 | 316 | 1.62e-86 | 263 |
| MS.gene64138.t1 | AT1G72210 | 45.570 | 316 | 122 | 10 | 1 | 292 | 1 | 290 | 2.03e-73 | 229 |
| MS.gene64138.t1 | AT1G22490 | 45.181 | 332 | 140 | 12 | 1 | 319 | 1 | 303 | 7.43e-73 | 228 |
| MS.gene64138.t1 | AT1G22490 | 43.279 | 305 | 132 | 11 | 1 | 292 | 1 | 277 | 2.42e-59 | 193 |
| MS.gene64138.t1 | AT5G46690 | 44.958 | 238 | 87 | 8 | 113 | 319 | 78 | 302 | 2.22e-43 | 152 |
| MS.gene64138.t1 | AT4G01460 | 39.437 | 213 | 112 | 3 | 113 | 319 | 105 | 306 | 1.17e-42 | 150 |
| MS.gene64138.t1 | AT4G01460 | 39.437 | 213 | 112 | 3 | 113 | 319 | 105 | 306 | 1.17e-42 | 150 |
| MS.gene64138.t1 | AT5G65320 | 40.097 | 207 | 109 | 2 | 119 | 319 | 98 | 295 | 1.57e-42 | 149 |
| MS.gene64138.t1 | AT3G24140 | 39.013 | 223 | 118 | 5 | 103 | 313 | 177 | 393 | 4.37e-40 | 145 |
| MS.gene64138.t1 | AT3G24140 | 39.013 | 223 | 118 | 5 | 103 | 313 | 177 | 393 | 4.74e-40 | 145 |
| MS.gene64138.t1 | AT2G46810 | 39.423 | 208 | 96 | 5 | 114 | 313 | 112 | 297 | 1.32e-39 | 141 |
| MS.gene64138.t1 | AT2G46810 | 39.423 | 208 | 96 | 5 | 114 | 313 | 172 | 357 | 5.10e-39 | 141 |
| MS.gene64138.t1 | AT2G46810 | 39.423 | 208 | 96 | 5 | 114 | 313 | 184 | 369 | 6.04e-39 | 141 |
| MS.gene64138.t1 | AT3G61950 | 38.278 | 209 | 100 | 6 | 112 | 313 | 116 | 302 | 5.52e-38 | 137 |
| MS.gene64138.t1 | AT3G61950 | 38.278 | 209 | 100 | 6 | 112 | 313 | 167 | 353 | 2.74e-37 | 137 |
| MS.gene64138.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 116 | 268 | 7.22e-36 | 131 |
| MS.gene64138.t1 | AT5G65320 | 40.107 | 187 | 97 | 2 | 119 | 299 | 98 | 275 | 9.06e-36 | 130 |
| MS.gene64138.t1 | AT5G46690 | 44.076 | 211 | 75 | 7 | 113 | 292 | 78 | 276 | 1.44e-35 | 130 |
| MS.gene64138.t1 | AT2G46810 | 41.618 | 173 | 73 | 3 | 114 | 279 | 112 | 263 | 2.43e-35 | 130 |
| MS.gene64138.t1 | AT3G61950 | 39.655 | 174 | 78 | 4 | 112 | 279 | 167 | 319 | 3.57e-35 | 131 |
| MS.gene64138.t1 | AT3G06120 | 33.871 | 186 | 106 | 3 | 123 | 298 | 1 | 179 | 1.19e-28 | 110 |
| MS.gene64138.t1 | AT5G53210 | 58.730 | 63 | 26 | 0 | 121 | 183 | 100 | 162 | 3.15e-19 | 87.8 |
| MS.gene64138.t1 | AT5G53210 | 58.730 | 63 | 26 | 0 | 121 | 183 | 100 | 162 | 3.73e-19 | 87.4 |
| MS.gene64138.t1 | AT3G61950 | 65.116 | 43 | 15 | 0 | 112 | 154 | 167 | 209 | 1.14e-12 | 66.6 |
| MS.gene64138.t1 | AT3G61950 | 65.116 | 43 | 15 | 0 | 112 | 154 | 167 | 209 | 1.14e-12 | 66.6 |
Find 65 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAATATCCTTTCAAAT+TGG | 0.190211 | 5.1:-49796257 | MS.gene64138:CDS |
| GGAGGAAGAGTGGAAGTTTC+AGG | 0.205757 | 5.1:+49796183 | None:intergenic |
| TGCCTCCTTCTTATGCAAAA+AGG | 0.226402 | 5.1:-49795987 | MS.gene64138:CDS |
| CATGTTTCCTCAATACTCTA+TGG | 0.258942 | 5.1:-49795493 | MS.gene64138:CDS |
| CATCCACACTTGAAACATTA+AGG | 0.263811 | 5.1:+49795292 | None:intergenic |
| TCACAATATCCTTTCAAATT+GGG | 0.367011 | 5.1:-49796256 | MS.gene64138:CDS |
| AGGTCAAATAATGGCCTTAG+AGG | 0.371011 | 5.1:-49796436 | None:intergenic |
| CCATGGCACGTGACTGATTA+TGG | 0.383936 | 5.1:+49795436 | None:intergenic |
| CATTGGTCTTTAACATTTGA+AGG | 0.384395 | 5.1:+49796222 | None:intergenic |
| GTTGTTGGGATTCAAAATCT+TGG | 0.395613 | 5.1:-49795330 | MS.gene64138:CDS |
| TGAGCTATTACGTAGAATTC+AGG | 0.401572 | 5.1:-49794440 | MS.gene64138:CDS |
| ACTTGGAGTGGTTTCAACTA+AGG | 0.406246 | 5.1:+49796359 | None:intergenic |
| ATGTTTCCTCAATACTCTAT+GGG | 0.408818 | 5.1:-49795492 | MS.gene64138:CDS |
| CGGTGCAATTAACTTCTTGA+AGG | 0.418841 | 5.1:-49795628 | MS.gene64138:CDS |
| AGGGGCTATGGTTGTTGTGG+TGG | 0.426444 | 5.1:+49796146 | None:intergenic |
| CCACTCCAAGTGAAGGATCT+TGG | 0.429067 | 5.1:-49796347 | MS.gene64138:CDS |
| CAGGTTATGAAGATGGTTGT+TGG | 0.441455 | 5.1:-49795345 | MS.gene64138:CDS |
| AGGTTATGAAGATGGTTGTT+GGG | 0.442208 | 5.1:-49795344 | MS.gene64138:CDS |
| CCAAGATCCTTCACTTGGAG+TGG | 0.454095 | 5.1:+49796347 | None:intergenic |
| CTGTAAATCAATGGATCTTG+TGG | 0.471914 | 5.1:+49796402 | None:intergenic |
| GGCAGATATAGAAGTGACTT+TGG | 0.474900 | 5.1:-49795415 | MS.gene64138:CDS |
| TGGCTCCAAGATCCTTCACT+TGG | 0.493996 | 5.1:+49796342 | None:intergenic |
| TGTTGTGGTGGATGCAAAAG+TGG | 0.496117 | 5.1:+49796158 | None:intergenic |
| CGTGACTGATTATGGTTGGT+AGG | 0.498430 | 5.1:+49795444 | None:intergenic |
| AATTAATAATAGGTAGAAGA+AGG | 0.501607 | 5.1:-49794508 | MS.gene64138:intron |
| TTTGCTCCGAGGAGGGGCTA+TGG | 0.508521 | 5.1:+49796134 | None:intergenic |
| GTCGTCGTTTGCTCCGAGGA+GGG | 0.510974 | 5.1:+49796127 | None:intergenic |
| CTGCAATGTGAGTCATCCTC+TGG | 0.511278 | 5.1:+49796067 | None:intergenic |
| TGCATAAGAAGGAGGCATCA+AGG | 0.514555 | 5.1:+49795993 | None:intergenic |
| TCTTTGCAACTGTAAATCAA+TGG | 0.515148 | 5.1:+49796393 | None:intergenic |
| GGTGATCAAGCGTCAATAGT+TGG | 0.522208 | 5.1:-49795651 | MS.gene64138:CDS |
| CCTTGTCTCGGTTAGTGCTA+AGG | 0.528899 | 5.1:-49795262 | MS.gene64138:intron |
| AAGGAGGCATCAAGGATTTG+AGG | 0.530586 | 5.1:+49796001 | None:intergenic |
| AAAAGTGGAAGGAGGAAGAG+TGG | 0.533377 | 5.1:+49796173 | None:intergenic |
| ACATAATCTACAACTCATGA+AGG | 0.534004 | 5.1:-49795598 | MS.gene64138:CDS |
| CTTCAAATGTTAAAGACCAA+TGG | 0.535334 | 5.1:-49796221 | MS.gene64138:CDS |
| TTGTTTGGCAACCGTAGTTG+TGG | 0.536558 | 5.1:+49796322 | None:intergenic |
| ATTAATAATAGGTAGAAGAA+GGG | 0.541316 | 5.1:-49794507 | MS.gene64138:intron |
| GTGAAGAGTGTGAATTCCAT+TGG | 0.541764 | 5.1:+49796205 | None:intergenic |
| CAACTACTGAACACAGTGGA+TGG | 0.542124 | 5.1:-49794481 | MS.gene64138:CDS |
| AAGAAGAATCCCAATTTGAA+AGG | 0.545406 | 5.1:+49796247 | None:intergenic |
| ACACCTTAATGTTTCAAGTG+TGG | 0.563886 | 5.1:-49795295 | MS.gene64138:CDS |
| CCATAATCAGTCACGTGCCA+TGG | 0.568858 | 5.1:-49795436 | MS.gene64138:CDS |
| ACAAGGACAGGTTATGAAGA+TGG | 0.569307 | 5.1:-49795352 | MS.gene64138:CDS |
| CAACAACCATAGCCCCTCCT+CGG | 0.583230 | 5.1:-49796140 | MS.gene64138:CDS |
| GTGACTGATTATGGTTGGTA+GGG | 0.586160 | 5.1:+49795445 | None:intergenic |
| CGTCGTCGTTTGCTCCGAGG+AGG | 0.588542 | 5.1:+49796126 | None:intergenic |
| TCGTCGTTTGCTCCGAGGAG+GGG | 0.595510 | 5.1:+49796128 | None:intergenic |
| GTTGAAACCACTCCAAGTGA+AGG | 0.604132 | 5.1:-49796354 | MS.gene64138:CDS |
| TGTGCACCCATAGAGTATTG+AGG | 0.608036 | 5.1:+49795486 | None:intergenic |
| AGGAGGGGCTATGGTTGTTG+TGG | 0.609496 | 5.1:+49796143 | None:intergenic |
| CCTTAGCACTAACCGAGACA+AGG | 0.614421 | 5.1:+49795262 | None:intergenic |
| GGATGATAATGTCCTTGTCT+CGG | 0.618077 | 5.1:-49795274 | MS.gene64138:CDS |
| GGATCTTGGAGCCACAACTA+CGG | 0.621648 | 5.1:-49796333 | MS.gene64138:CDS |
| AGTCACTTCTATATCTGCCA+TGG | 0.622403 | 5.1:+49795419 | None:intergenic |
| GTGGTGGATGCAAAAGTGGA+AGG | 0.632533 | 5.1:+49796162 | None:intergenic |
| AGGAGGAAATCGAGAGCCAG+AGG | 0.636953 | 5.1:-49796083 | MS.gene64138:CDS |
| CATAATCTACAACTCATGAA+GGG | 0.646610 | 5.1:-49795597 | MS.gene64138:CDS |
| GCTATTACGTAGAATTCAGG+TGG | 0.646782 | 5.1:-49794437 | MS.gene64138:CDS |
| GGCACGTGACTGATTATGGT+TGG | 0.656195 | 5.1:+49795440 | None:intergenic |
| GATCAAGCGTCAATAGTTGG+CGG | 0.662112 | 5.1:-49795648 | MS.gene64138:CDS |
| GCGCGTCGTCGTTTGCTCCG+AGG | 0.664657 | 5.1:+49796123 | None:intergenic |
| GTGGATGCAAAAGTGGAAGG+AGG | 0.667144 | 5.1:+49796165 | None:intergenic |
| TCAAGGATTTGAGGACATCG+AGG | 0.738437 | 5.1:+49796010 | None:intergenic |
| GTGTCAACTACTGAACACAG+TGG | 0.768612 | 5.1:-49794485 | MS.gene64138:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATCACTATTAAA+CGG | - | chr5.1:49795784-49795803 | MS.gene64138:intron | 10.0% |
| !! | TATATATTGGAATTAATAAT+AGG | - | chr5.1:49796325-49796344 | MS.gene64138:CDS | 10.0% |
| !!! | AATTTATTTTTTTTGACAAA+TGG | - | chr5.1:49796293-49796312 | MS.gene64138:CDS | 10.0% |
| !!! | TGAAAATTTTGATTTTTTTT+TGG | + | chr5.1:49795141-49795160 | None:intergenic | 10.0% |
| !! | ATGGTTACTAATTTATATAT+TGG | - | chr5.1:49796312-49796331 | MS.gene64138:CDS | 15.0% |
| !! | AAATTCAATACTATACCATT+TGG | - | chr5.1:49795871-49795890 | MS.gene64138:intron | 20.0% |
| !! | AACTTCATAAATATGATATG+TGG | - | chr5.1:49795814-49795833 | MS.gene64138:intron | 20.0% |
| !! | AATTAATAATAGGTAGAAGA+AGG | - | chr5.1:49796335-49796354 | MS.gene64138:CDS | 20.0% |
| !! | ATGTGTTATAAAATTGTTGT+TGG | + | chr5.1:49795086-49795105 | None:intergenic | 20.0% |
| !! | ATTAATAATAGGTAGAAGAA+GGG | - | chr5.1:49796336-49796355 | MS.gene64138:CDS | 20.0% |
| !! | TAAAATTCACTATCAAGATT+TGG | - | chr5.1:49795661-49795680 | MS.gene64138:intron | 20.0% |
| !!! | ATTTTTGTTGAGAAAATTGT+TGG | + | chr5.1:49795770-49795789 | None:intergenic | 20.0% |
| !!! | CAAAATAGTGAAAAACATTT+TGG | - | chr5.1:49796265-49796284 | MS.gene64138:CDS | 20.0% |
| !!! | TGTGTTATAAAATTGTTGTT+GGG | + | chr5.1:49795085-49795104 | None:intergenic | 20.0% |
| ! | AACATGAAAAACTCAGTAAA+AGG | + | chr5.1:49795336-49795355 | None:intergenic | 25.0% |
| ! | ATAATGTTGAAAAAACGACA+AGG | - | chr5.1:49795474-49795493 | MS.gene64138:CDS | 25.0% |
| ! | ATATGGTTTAAAAATTGACG+TGG | + | chr5.1:49796226-49796245 | None:intergenic | 25.0% |
| ! | ATCACAATATCCTTTCAAAT+TGG | - | chr5.1:49794586-49794605 | MS.gene64138:intron | 25.0% |
| ! | CTTGTGTAATATTTACCAAA+TGG | + | chr5.1:49795889-49795908 | None:intergenic | 25.0% |
| ! | CTTGTTAAATAAATGATGAG+TGG | - | chr5.1:49795685-49795704 | MS.gene64138:intron | 25.0% |
| ! | TCACAATATCCTTTCAAATT+GGG | - | chr5.1:49794587-49794606 | MS.gene64138:intron | 25.0% |
| ! | TGTTTCATAAACACAATTGT+TGG | - | chr5.1:49794936-49794955 | MS.gene64138:intron | 25.0% |
| !! | GTGTTATAAAATTGTTGTTG+GGG | + | chr5.1:49795084-49795103 | None:intergenic | 25.0% |
| !!! | ATCTACTTTAAAATCACAGA+TGG | + | chr5.1:49796046-49796065 | None:intergenic | 25.0% |
| AAGAAGAATCCCAATTTGAA+AGG | + | chr5.1:49794599-49794618 | None:intergenic | 30.0% | |
| ACATAATCTACAACTCATGA+AGG | - | chr5.1:49795245-49795264 | MS.gene64138:intron | 30.0% | |
| AGAGAAATATTCGATTGAGA+GGG | - | chr5.1:49795728-49795747 | MS.gene64138:intron | 30.0% | |
| ATGAAAAACTCAGTAAAAGG+TGG | + | chr5.1:49795333-49795352 | None:intergenic | 30.0% | |
| ATGTTTCCTCAATACTCTAT+GGG | - | chr5.1:49795351-49795370 | MS.gene64138:CDS | 30.0% | |
| CATAATCTACAACTCATGAA+GGG | - | chr5.1:49795246-49795265 | MS.gene64138:intron | 30.0% | |
| CTTCAAATGTTAAAGACCAA+TGG | - | chr5.1:49794622-49794641 | MS.gene64138:intron | 30.0% | |
| TACTTAACAAAGGTGAACTA+GGG | - | chr5.1:49796177-49796196 | MS.gene64138:CDS | 30.0% | |
| TAGAGAAATATTCGATTGAG+AGG | - | chr5.1:49795727-49795746 | MS.gene64138:intron | 30.0% | |
| TCTTTGCAACTGTAAATCAA+TGG | + | chr5.1:49794453-49794472 | None:intergenic | 30.0% | |
| TGAACCACATGTAGAATTTA+GGG | + | chr5.1:49795165-49795184 | None:intergenic | 30.0% | |
| TTGAACCACATGTAGAATTT+AGG | + | chr5.1:49795166-49795185 | None:intergenic | 30.0% | |
| ! | ACTTTGATGTCTTATGGTTT+TGG | - | chr5.1:49795007-49795026 | MS.gene64138:intron | 30.0% |
| ! | ATTACCCTTTTTGCATAAGA+AGG | + | chr5.1:49794864-49794883 | None:intergenic | 30.0% |
| ! | CTTTGATGTCTTATGGTTTT+GGG | - | chr5.1:49795008-49795027 | MS.gene64138:intron | 30.0% |
| !! | CATTGGTCTTTAACATTTGA+AGG | + | chr5.1:49794624-49794643 | None:intergenic | 30.0% |
| AAAATTGTTGGAGACATGGT+AGG | + | chr5.1:49795758-49795777 | None:intergenic | 35.0% | |
| AGGTTATGAAGATGGTTGTT+GGG | - | chr5.1:49795499-49795518 | MS.gene64138:CDS | 35.0% | |
| CATCCACACTTGAAACATTA+AGG | + | chr5.1:49795554-49795573 | None:intergenic | 35.0% | |
| CATGTTTCCTCAATACTCTA+TGG | - | chr5.1:49795350-49795369 | MS.gene64138:CDS | 35.0% | |
| CTACATGTGGTTCAAAAACA+GGG | - | chr5.1:49795171-49795190 | MS.gene64138:intron | 35.0% | |
| CTGTAAATCAATGGATCTTG+TGG | + | chr5.1:49794444-49794463 | None:intergenic | 35.0% | |
| GAGAAATATTCGATTGAGAG+GGG | - | chr5.1:49795729-49795748 | MS.gene64138:intron | 35.0% | |
| GAGGAAACTTTGATGTCTTA+TGG | - | chr5.1:49795001-49795020 | MS.gene64138:intron | 35.0% | |
| GTACTTAACAAAGGTGAACT+AGG | - | chr5.1:49796176-49796195 | MS.gene64138:CDS | 35.0% | |
| GTTGTTGGGATTCAAAATCT+TGG | - | chr5.1:49795513-49795532 | MS.gene64138:CDS | 35.0% | |
| TCAACCCTAAATTCTACATG+TGG | - | chr5.1:49795158-49795177 | MS.gene64138:intron | 35.0% | |
| TCTACATGTGGTTCAAAAAC+AGG | - | chr5.1:49795170-49795189 | MS.gene64138:intron | 35.0% | |
| TGAGAAAATTGTTGGAGACA+TGG | + | chr5.1:49795762-49795781 | None:intergenic | 35.0% | |
| TGAGCTATTACGTAGAATTC+AGG | - | chr5.1:49796403-49796422 | MS.gene64138:CDS | 35.0% | |
| TGGAAAAACTATAGCCTCTA+AGG | + | chr5.1:49794424-49794443 | None:intergenic | 35.0% | |
| TGGTTTAAAAATTGACGTGG+AGG | + | chr5.1:49796223-49796242 | None:intergenic | 35.0% | |
| ! | AAAAATTGACGTGGAGGTTT+TGG | + | chr5.1:49796217-49796236 | None:intergenic | 35.0% |
| ! | ACACCTTAATGTTTCAAGTG+TGG | - | chr5.1:49795548-49795567 | MS.gene64138:CDS | 35.0% |
| ! | GATCTTCTTCGTCTTTTGTT+TGG | + | chr5.1:49794539-49794558 | None:intergenic | 35.0% |
| !! | ATTTGCTGTTTGCATCATGA+CGG | - | chr5.1:49796149-49796168 | MS.gene64138:CDS | 35.0% |
| !!! | CCTCAATTTTTAGTCGATCT+GGG | + | chr5.1:49794985-49795004 | None:intergenic | 35.0% |
| !!! | TCCTCAATTTTTAGTCGATC+TGG | + | chr5.1:49794986-49795005 | None:intergenic | 35.0% |
| ACAAGGACAGGTTATGAAGA+TGG | - | chr5.1:49795491-49795510 | MS.gene64138:CDS | 40.0% | |
| ACTTGGAGTGGTTTCAACTA+AGG | + | chr5.1:49794487-49794506 | None:intergenic | 40.0% | |
| AGTCACTTCTATATCTGCCA+TGG | + | chr5.1:49795427-49795446 | None:intergenic | 40.0% | |
| CAGGTTATGAAGATGGTTGT+TGG | - | chr5.1:49795498-49795517 | MS.gene64138:CDS | 40.0% | |
| CCCAGATCGACTAAAAATTG+AGG | - | chr5.1:49794982-49795001 | MS.gene64138:intron | 40.0% | |
| CGGTGCAATTAACTTCTTGA+AGG | - | chr5.1:49795215-49795234 | MS.gene64138:intron | 40.0% | |
| CGGTTAGTGCTAAGGTAAAT+TGG | - | chr5.1:49795589-49795608 | MS.gene64138:CDS | 40.0% | |
| GCCTCCTTCTTATGCAAAAA+GGG | - | chr5.1:49794857-49794876 | MS.gene64138:intron | 40.0% | |
| GCTATTACGTAGAATTCAGG+TGG | - | chr5.1:49796406-49796425 | MS.gene64138:CDS | 40.0% | |
| GGCAGATATAGAAGTGACTT+TGG | - | chr5.1:49795428-49795447 | MS.gene64138:CDS | 40.0% | |
| GTTGAAAAAACGACAAGGAC+AGG | - | chr5.1:49795479-49795498 | MS.gene64138:CDS | 40.0% | |
| TGCCTCCTTCTTATGCAAAA+AGG | - | chr5.1:49794856-49794875 | MS.gene64138:intron | 40.0% | |
| TGTGAATGCAAAAAACGAGG+AGG | - | chr5.1:49794743-49794762 | MS.gene64138:intron | 40.0% | |
| ! | ACCCTTTTTGCATAAGAAGG+AGG | + | chr5.1:49794861-49794880 | None:intergenic | 40.0% |
| ! | GGATGATAATGTCCTTGTCT+CGG | - | chr5.1:49795569-49795588 | MS.gene64138:CDS | 40.0% |
| ! | GTGAAGAGTGTGAATTCCAT+TGG | + | chr5.1:49794641-49794660 | None:intergenic | 40.0% |
| ! | GTGACTGATTATGGTTGGTA+GGG | + | chr5.1:49795401-49795420 | None:intergenic | 40.0% |
| AAAAGTGGAAGGAGGAAGAG+TGG | + | chr5.1:49794673-49794692 | None:intergenic | 45.0% | |
| CAACTACTGAACACAGTGGA+TGG | - | chr5.1:49796362-49796381 | MS.gene64138:CDS | 45.0% | |
| CGCTGTGAATGCAAAAAACG+AGG | - | chr5.1:49794740-49794759 | MS.gene64138:intron | 45.0% | |
| CGTGACTGATTATGGTTGGT+AGG | + | chr5.1:49795402-49795421 | None:intergenic | 45.0% | |
| GATCAAGCGTCAATAGTTGG+CGG | - | chr5.1:49795195-49795214 | MS.gene64138:intron | 45.0% | |
| GGTGATCAAGCGTCAATAGT+TGG | - | chr5.1:49795192-49795211 | MS.gene64138:intron | 45.0% | |
| GTGTCAACTACTGAACACAG+TGG | - | chr5.1:49796358-49796377 | MS.gene64138:CDS | 45.0% | |
| GTTGAAACCACTCCAAGTGA+AGG | - | chr5.1:49794489-49794508 | MS.gene64138:CDS | 45.0% | |
| TCAAGGATTTGAGGACATCG+AGG | + | chr5.1:49794836-49794855 | None:intergenic | 45.0% | |
| TCCTAGACGTTTAACGCATC+CGG | - | chr5.1:49795046-49795065 | MS.gene64138:intron | 45.0% | |
| TTGTTTGGCAACCGTAGTTG+TGG | + | chr5.1:49794524-49794543 | None:intergenic | 45.0% | |
| ! | AATTGTTGTTGGGGAGTCTG+AGG | + | chr5.1:49795075-49795094 | None:intergenic | 45.0% |
| !! | AAGGAGGCATCAAGGATTTG+AGG | + | chr5.1:49794845-49794864 | None:intergenic | 45.0% |
| !! | TGCATAAGAAGGAGGCATCA+AGG | + | chr5.1:49794853-49794872 | None:intergenic | 45.0% |
| !! | TGTGCACCCATAGAGTATTG+AGG | + | chr5.1:49795360-49795379 | None:intergenic | 45.0% |
| !! | TGTTGTGGTGGATGCAAAAG+TGG | + | chr5.1:49794688-49794707 | None:intergenic | 45.0% |
| !!! | TATGGTTTTGGGTACGAGTG+TGG | - | chr5.1:49795019-49795038 | MS.gene64138:intron | 45.0% |
| !! | TATAATTTAATTAAGTAATA+TGG | + | chr5.1:49796243-49796262 | None:intergenic | 5.0% |
| CCAAGATCCTTCACTTGGAG+TGG | + | chr5.1:49794499-49794518 | None:intergenic | 50.0% | |
| CCACTCCAAGTGAAGGATCT+TGG | - | chr5.1:49794496-49794515 | MS.gene64138:CDS | 50.0% | |
| CCATAATCAGTCACGTGCCA+TGG | - | chr5.1:49795407-49795426 | MS.gene64138:CDS | 50.0% | |
| CCATGGCACGTGACTGATTA+TGG | + | chr5.1:49795410-49795429 | None:intergenic | 50.0% | |
| CCTAGACGTTTAACGCATCC+GGG | - | chr5.1:49795047-49795066 | MS.gene64138:intron | 50.0% | |
| CCTTAGCACTAACCGAGACA+AGG | + | chr5.1:49795584-49795603 | None:intergenic | 50.0% | |
| CCTTGTCTCGGTTAGTGCTA+AGG | - | chr5.1:49795581-49795600 | MS.gene64138:CDS | 50.0% | |
| CTGCAATGTGAGTCATCCTC+TGG | + | chr5.1:49794779-49794798 | None:intergenic | 50.0% | |
| GACGGTCGCGTACTTAACAA+AGG | - | chr5.1:49796167-49796186 | MS.gene64138:CDS | 50.0% | |
| GGAGGAAGAGTGGAAGTTTC+AGG | + | chr5.1:49794663-49794682 | None:intergenic | 50.0% | |
| GGATCTTGGAGCCACAACTA+CGG | - | chr5.1:49794510-49794529 | MS.gene64138:intron | 50.0% | |
| GGCACGTGACTGATTATGGT+TGG | + | chr5.1:49795406-49795425 | None:intergenic | 50.0% | |
| GTGGATGCAAAAGTGGAAGG+AGG | + | chr5.1:49794681-49794700 | None:intergenic | 50.0% | |
| TGGCTCCAAGATCCTTCACT+TGG | + | chr5.1:49794504-49794523 | None:intergenic | 50.0% | |
| !! | GTGGTGGATGCAAAAGTGGA+AGG | + | chr5.1:49794684-49794703 | None:intergenic | 50.0% |
| AGGAGGAAATCGAGAGCCAG+AGG | - | chr5.1:49794760-49794779 | MS.gene64138:intron | 55.0% | |
| AGGAGGGGCTATGGTTGTTG+TGG | + | chr5.1:49794703-49794722 | None:intergenic | 55.0% | |
| AGGGGCTATGGTTGTTGTGG+TGG | + | chr5.1:49794700-49794719 | None:intergenic | 55.0% | |
| CAACAACCATAGCCCCTCCT+CGG | - | chr5.1:49794703-49794722 | MS.gene64138:intron | 55.0% | |
| CCCGGATGCGTTAAACGTCT+AGG | + | chr5.1:49795050-49795069 | None:intergenic | 55.0% | |
| GTCGTCGTTTGCTCCGAGGA+GGG | + | chr5.1:49794719-49794738 | None:intergenic | 60.0% | |
| TCGTCGTTTGCTCCGAGGAG+GGG | + | chr5.1:49794718-49794737 | None:intergenic | 60.0% | |
| TTTGCTCCGAGGAGGGGCTA+TGG | + | chr5.1:49794712-49794731 | None:intergenic | 60.0% | |
| CGTCGTCGTTTGCTCCGAGG+AGG | + | chr5.1:49794720-49794739 | None:intergenic | 65.0% | |
| GTTGGGGAGTCTGAGGAGCC+CGG | + | chr5.1:49795068-49795087 | None:intergenic | 65.0% | |
| GCGCGTCGTCGTTTGCTCCG+AGG | + | chr5.1:49794723-49794742 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 49794417 | 49796448 | 49794417 | ID=MS.gene64138 |
| chr5.1 | mRNA | 49794417 | 49796448 | 49794417 | ID=MS.gene64138.t1;Parent=MS.gene64138 |
| chr5.1 | exon | 49795987 | 49796448 | 49795987 | ID=MS.gene64138.t1.exon1;Parent=MS.gene64138.t1 |
| chr5.1 | CDS | 49795987 | 49796448 | 49795987 | ID=cds.MS.gene64138.t1;Parent=MS.gene64138.t1 |
| chr5.1 | exon | 49795263 | 49795673 | 49795263 | ID=MS.gene64138.t1.exon2;Parent=MS.gene64138.t1 |
| chr5.1 | CDS | 49795263 | 49795673 | 49795263 | ID=cds.MS.gene64138.t1;Parent=MS.gene64138.t1 |
| chr5.1 | exon | 49794417 | 49794518 | 49794417 | ID=MS.gene64138.t1.exon3;Parent=MS.gene64138.t1 |
| chr5.1 | CDS | 49794417 | 49794518 | 49794417 | ID=cds.MS.gene64138.t1;Parent=MS.gene64138.t1 |
| Gene Sequence |
| Protein sequence |
