Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013121.t1 | XP_003602850.1 | 83.2 | 327 | 47 | 2 | 1 | 325 | 1 | 321 | 4.20E-137 | 497.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013121.t1 | Q9C7T4 | 51.9 | 337 | 129 | 8 | 1 | 322 | 1 | 319 | 2.8e-57 | 223.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013121.t1 | F0V437 | 83.2 | 327 | 47 | 2 | 1 | 325 | 1 | 321 | 3.0e-137 | 497.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene013121.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene002282 | MS.gene013121 | PPI |
MS.gene047441 | MS.gene013121 | PPI |
MS.gene90276 | MS.gene013121 | PPI |
MS.gene013121 | MS.gene053631 | PPI |
MS.gene02239 | MS.gene013121 | PPI |
MS.gene028530 | MS.gene013121 | PPI |
MS.gene40107 | MS.gene013121 | PPI |
MS.gene01262 | MS.gene013121 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013121.t1 | MTR_3g099620 | 94.495 | 327 | 10 | 2 | 1 | 325 | 1 | 321 | 0.0 | 638 |
MS.gene013121.t1 | MTR_5g064950 | 56.098 | 328 | 106 | 10 | 1 | 321 | 1 | 297 | 3.59e-107 | 315 |
MS.gene013121.t1 | MTR_7g113830 | 51.250 | 320 | 131 | 6 | 1 | 319 | 14 | 309 | 7.60e-97 | 289 |
MS.gene013121.t1 | MTR_1g082480 | 50.755 | 331 | 140 | 6 | 1 | 319 | 14 | 333 | 1.77e-93 | 281 |
MS.gene013121.t1 | MTR_5g064950 | 55.000 | 300 | 97 | 10 | 1 | 293 | 1 | 269 | 8.16e-93 | 278 |
MS.gene013121.t1 | MTR_1g082480 | 50.820 | 305 | 127 | 6 | 1 | 293 | 14 | 307 | 1.07e-83 | 256 |
MS.gene013121.t1 | MTR_8g066770 | 57.674 | 215 | 74 | 3 | 111 | 319 | 103 | 306 | 2.53e-80 | 247 |
MS.gene013121.t1 | MTR_8g024210 | 52.427 | 206 | 84 | 3 | 111 | 316 | 170 | 361 | 2.87e-58 | 192 |
MS.gene013121.t1 | MTR_0194s0050 | 47.556 | 225 | 93 | 6 | 103 | 313 | 165 | 378 | 2.38e-56 | 187 |
MS.gene013121.t1 | MTR_2g022280 | 41.146 | 192 | 102 | 4 | 122 | 311 | 1 | 183 | 1.03e-39 | 138 |
MS.gene013121.t1 | MTR_3g090850 | 34.661 | 251 | 122 | 6 | 102 | 311 | 77 | 326 | 1.62e-37 | 137 |
MS.gene013121.t1 | MTR_1g028470 | 36.437 | 247 | 127 | 7 | 85 | 311 | 54 | 290 | 4.47e-36 | 132 |
MS.gene013121.t1 | MTR_1g112680 | 26.066 | 211 | 122 | 7 | 125 | 314 | 319 | 516 | 1.97e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene013121.t1 | AT1G72210 | 49.560 | 341 | 131 | 9 | 1 | 322 | 1 | 319 | 3.42e-91 | 275 |
MS.gene013121.t1 | AT1G22490 | 46.084 | 332 | 137 | 9 | 1 | 319 | 1 | 303 | 1.04e-85 | 260 |
MS.gene013121.t1 | AT1G72210 | 48.397 | 312 | 120 | 9 | 1 | 293 | 1 | 290 | 7.96e-76 | 235 |
MS.gene013121.t1 | AT1G22490 | 44.194 | 310 | 131 | 9 | 1 | 297 | 1 | 281 | 1.33e-70 | 223 |
MS.gene013121.t1 | AT4G01460 | 41.784 | 213 | 118 | 1 | 110 | 322 | 103 | 309 | 3.18e-53 | 177 |
MS.gene013121.t1 | AT4G01460 | 41.784 | 213 | 118 | 1 | 110 | 322 | 103 | 309 | 3.18e-53 | 177 |
MS.gene013121.t1 | AT5G65320 | 47.059 | 204 | 100 | 3 | 118 | 319 | 98 | 295 | 3.39e-52 | 174 |
MS.gene013121.t1 | AT3G24140 | 44.196 | 224 | 108 | 4 | 101 | 313 | 176 | 393 | 1.27e-51 | 176 |
MS.gene013121.t1 | AT3G24140 | 44.196 | 224 | 108 | 4 | 101 | 313 | 176 | 393 | 1.83e-51 | 176 |
MS.gene013121.t1 | AT2G46810 | 46.040 | 202 | 92 | 3 | 113 | 313 | 112 | 297 | 9.38e-51 | 170 |
MS.gene013121.t1 | AT2G46810 | 46.040 | 202 | 92 | 3 | 113 | 313 | 172 | 357 | 2.63e-50 | 171 |
MS.gene013121.t1 | AT2G46810 | 46.040 | 202 | 92 | 3 | 113 | 313 | 184 | 369 | 3.19e-50 | 171 |
MS.gene013121.t1 | AT5G46690 | 43.802 | 242 | 87 | 7 | 111 | 319 | 77 | 302 | 7.86e-49 | 166 |
MS.gene013121.t1 | AT5G65320 | 47.568 | 185 | 90 | 2 | 110 | 293 | 90 | 268 | 1.77e-47 | 161 |
MS.gene013121.t1 | AT3G61950 | 45.098 | 204 | 94 | 3 | 111 | 313 | 116 | 302 | 2.37e-47 | 162 |
MS.gene013121.t1 | AT3G61950 | 45.098 | 204 | 94 | 3 | 111 | 313 | 167 | 353 | 3.98e-47 | 162 |
MS.gene013121.t1 | AT2G46810 | 40.870 | 230 | 91 | 4 | 113 | 313 | 112 | 325 | 3.60e-45 | 157 |
MS.gene013121.t1 | AT3G61950 | 46.471 | 170 | 74 | 2 | 111 | 280 | 116 | 268 | 6.17e-43 | 150 |
MS.gene013121.t1 | AT3G61950 | 46.471 | 170 | 74 | 2 | 111 | 280 | 167 | 319 | 1.12e-42 | 150 |
MS.gene013121.t1 | AT5G46690 | 43.056 | 216 | 74 | 7 | 111 | 293 | 77 | 276 | 1.21e-38 | 139 |
MS.gene013121.t1 | AT3G06120 | 36.683 | 199 | 108 | 5 | 122 | 311 | 1 | 190 | 5.01e-32 | 119 |
MS.gene013121.t1 | AT5G53210 | 66.154 | 65 | 22 | 0 | 120 | 184 | 100 | 164 | 5.09e-23 | 98.2 |
MS.gene013121.t1 | AT5G53210 | 66.154 | 65 | 22 | 0 | 120 | 184 | 100 | 164 | 5.41e-23 | 98.2 |
MS.gene013121.t1 | AT3G61950 | 69.767 | 43 | 13 | 0 | 111 | 153 | 167 | 209 | 8.96e-14 | 69.7 |
MS.gene013121.t1 | AT3G61950 | 69.767 | 43 | 13 | 0 | 111 | 153 | 167 | 209 | 8.96e-14 | 69.7 |
Find 0 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTTTTTAAAAATTAAA+TGG | - | 23852:8823-8842 | None:intergenic | 0.0% |
!! | AAATATAATTAGAAAGTTAA+CGG | - | 23852:7633-7652 | None:intergenic | 10.0% |
!!! | AATTTTTATTTATTGATTGT+TGG | + | 23852:7940-7959 | MS.gene013121:intron | 10.0% |
!!! | TAAATATGCATTTTTTATAA+TGG | - | 23852:8118-8137 | None:intergenic | 10.0% |
!!! | TTAAAATTATTTATTTCTGT+TGG | + | 23852:8794-8813 | MS.gene013121:intron | 10.0% |
!!! | TTAATTAATTTATGAGTTTT+GGG | + | 23852:8868-8887 | MS.gene013121:intron | 10.0% |
!! | AATATAATTAGAAAGTTAAC+GGG | - | 23852:7632-7651 | None:intergenic | 15.0% |
!! | TATTTGCATATTTATTTATG+TGG | + | 23852:7915-7934 | MS.gene013121:intron | 15.0% |
!! | TTTAAGCTCTTAAAAAAATT+AGG | - | 23852:7994-8013 | None:intergenic | 15.0% |
!!! | AGTAGAAATTTTAAGTAATT+TGG | + | 23852:8845-8864 | MS.gene013121:intron | 15.0% |
!!! | GTTAATTAATTTATGAGTTT+TGG | + | 23852:8867-8886 | MS.gene013121:intron | 15.0% |
!!! | TTACAATTTTTTTTTTGCAA+AGG | + | 23852:8159-8178 | MS.gene013121:intron | 15.0% |
!! | AATTGTTATGTGAGTTAAAA+TGG | + | 23852:8280-8299 | MS.gene013121:intron | 20.0% |
!!! | ATTTGTTTTACTTATGATAG+AGG | + | 23852:7713-7732 | MS.gene013121:intron | 20.0% |
! | ACACTAGTAGTACATAAAAA+GGG | + | 23852:8026-8045 | MS.gene013121:intron | 25.0% |
! | ACATTCAAAGTGAAAATTGA+AGG | - | 23852:7662-7681 | None:intergenic | 25.0% |
! | AGCTAACACTCAATAAAAAT+TGG | + | 23852:7808-7827 | MS.gene013121:intron | 25.0% |
! | ATACAAAATTCCATGTGTAT+TGG | + | 23852:8323-8342 | MS.gene013121:intron | 25.0% |
! | CATTCAAAGTGAAAATTGAA+GGG | - | 23852:7661-7680 | None:intergenic | 25.0% |
! | TCTTTGTAACTATATGTGAA+TGG | - | 23852:7025-7044 | None:intergenic | 25.0% |
! | TGTATTGGATTGAAAAAACA+GGG | + | 23852:8338-8357 | MS.gene013121:intron | 25.0% |
!! | AACTTATGAAGATTGTTGTT+GGG | + | 23852:8672-8691 | MS.gene013121:CDS | 25.0% |
!! | AAGTTGTCTTTAAAGAATTG+TGG | + | 23852:7778-7797 | MS.gene013121:intron | 25.0% |
!! | AGTTGTCTTTAAAGAATTGT+GGG | + | 23852:7779-7798 | MS.gene013121:intron | 25.0% |
!! | ATTTTCACTTTGAATGTATG+TGG | + | 23852:7665-7684 | MS.gene013121:intron | 25.0% |
!! | CTTGCTATGATAAAAGATTA+TGG | - | 23852:8088-8107 | None:intergenic | 25.0% |
!! | TTTTCACTTTGAATGTATGT+GGG | + | 23852:7666-7685 | MS.gene013121:intron | 25.0% |
!!! | TTTTTTCAATCCAATACACA+TGG | - | 23852:8336-8355 | None:intergenic | 25.0% |
AAAGTGAAGAATTCAGCAAA+AGG | - | 23852:8491-8510 | None:intergenic | 30.0% | |
AACAACATTTACAGTCTATG+GGG | + | 23852:8411-8430 | MS.gene013121:CDS | 30.0% | |
AAGAGGAGATTGAAAATCAA+AGG | + | 23852:7326-7345 | MS.gene013121:CDS | 30.0% | |
AGAACAACATTTACAGTCTA+TGG | + | 23852:8409-8428 | MS.gene013121:CDS | 30.0% | |
ATTACCAAGAACACAAACAA+TGG | + | 23852:8573-8592 | MS.gene013121:CDS | 30.0% | |
ATTCTATCCAAGAAAAAACC+AGG | + | 23852:8647-8666 | MS.gene013121:CDS | 30.0% | |
CAACTTATGAAGATTGTTGT+TGG | + | 23852:8671-8690 | MS.gene013121:CDS | 30.0% | |
GAACAACATTTACAGTCTAT+GGG | + | 23852:8410-8429 | MS.gene013121:CDS | 30.0% | |
GACACATAAATGCAAATCTA+TGG | + | 23852:7830-7849 | MS.gene013121:intron | 30.0% | |
GACACTAGTAGTACATAAAA+AGG | + | 23852:8025-8044 | MS.gene013121:intron | 30.0% | |
GAGAACATAGGCTTAAATAA+TGG | + | 23852:8461-8480 | MS.gene013121:CDS | 30.0% | |
GGTAACATTAAGATGAAGAA+TGG | - | 23852:8717-8736 | None:intergenic | 30.0% | |
GTGTATTGGATTGAAAAAAC+AGG | + | 23852:8337-8356 | MS.gene013121:intron | 30.0% | |
TACTTATGATAGAGGAAAGA+TGG | + | 23852:7721-7740 | MS.gene013121:intron | 30.0% | |
TCTTCATCTTAATGTTACCA+CGG | + | 23852:8718-8737 | MS.gene013121:CDS | 30.0% | |
TGTGAATCAACTATTAAGGA+CGG | + | 23852:8957-8976 | MS.gene013121:CDS | 30.0% | |
TTACCAAGAACACAAACAAT+GGG | + | 23852:8574-8593 | MS.gene013121:CDS | 30.0% | |
TTCTGTTAAGGATCATCAAT+GGG | + | 23852:7165-7184 | MS.gene013121:CDS | 30.0% | |
TTGTTGGGTTACAAAATCTT+AGG | + | 23852:8687-8706 | MS.gene013121:CDS | 30.0% | |
! | CTTGGATAGAATTTTCATGT+TGG | - | 23852:8639-8658 | None:intergenic | 30.0% |
!! | TTGGTTGTTTCGTTTTCTTT+TGG | - | 23852:8439-8458 | None:intergenic | 30.0% |
!!! | AGTTTTGGGTATGAATTGAT+TGG | + | 23852:8882-8901 | MS.gene013121:intron | 30.0% |
AAACAACCAAACGAGAACAT+AGG | + | 23852:8449-8468 | MS.gene013121:CDS | 35.0% | |
ACAACATTTACAGTCTATGG+GGG | + | 23852:8412-8431 | MS.gene013121:CDS | 35.0% | |
ACAATCTTCATAAGTTGTCC+TGG | - | 23852:8668-8687 | None:intergenic | 35.0% | |
ACCCTTTGAACATAAGAAGA+AGG | - | 23852:7427-7446 | None:intergenic | 35.0% | |
AGGAGCAATAAACTTTGTGA+AGG | + | 23852:8382-8401 | MS.gene013121:CDS | 35.0% | |
CCTAAAGCTCACTCAAAAAA+CGG | - | 23852:7861-7880 | None:intergenic | 35.0% | |
CTGCTGTGAATCAACTATTA+AGG | + | 23852:8953-8972 | MS.gene013121:CDS | 35.0% | |
GAATAGTGTGGATGAAATTG+CGG | + | 23852:8930-8949 | MS.gene013121:CDS | 35.0% | |
GCCTTCTTCTTATGTTCAAA+GGG | + | 23852:7423-7442 | MS.gene013121:CDS | 35.0% | |
GTTCTGTTAAGGATCATCAA+TGG | + | 23852:7164-7183 | MS.gene013121:CDS | 35.0% | |
TATGTGAATGGATCTTGTTG+TGG | - | 23852:7013-7032 | None:intergenic | 35.0% | |
TCTTTACTCAGTTAGTGTCA+AGG | + | 23852:8754-8773 | MS.gene013121:CDS | 35.0% | |
TGACTATGATCATCTTCATG+CGG | + | 23852:7069-7088 | MS.gene013121:CDS | 35.0% | |
TGCCTTCTTCTTATGTTCAA+AGG | + | 23852:7422-7441 | MS.gene013121:CDS | 35.0% | |
TTTAAGCCTATGTTCTCGTT+TGG | - | 23852:8458-8477 | None:intergenic | 35.0% | |
! | ATGTGAATGGATCTTGTTGT+GGG | - | 23852:7012-7031 | None:intergenic | 35.0% |
!! | GTTCATTGTTGATGATTCCT+AGG | - | 23852:7114-7133 | None:intergenic | 35.0% |
!!! | AAGTTGTCCTGGTTTTTTCT+TGG | - | 23852:8657-8676 | None:intergenic | 35.0% |
AACAAGAATCCCAGTTTGCA+TGG | - | 23852:7147-7166 | None:intergenic | 40.0% | |
AGCAAAATCTCCATGCAAAC+TGG | + | 23852:7134-7153 | MS.gene013121:CDS | 40.0% | |
AGCCGTGATAGTTTGATCAA+CGG | - | 23852:7224-7243 | None:intergenic | 40.0% | |
CAACAACAACAACGTCACAA+TGG | + | 23852:8541-8560 | MS.gene013121:CDS | 40.0% | |
CAACATTTACAGTCTATGGG+GGG | + | 23852:8413-8432 | MS.gene013121:CDS | 40.0% | |
CACCGTTGATCAAACTATCA+CGG | + | 23852:7219-7238 | MS.gene013121:CDS | 40.0% | |
CACTTTGAATGTATGTGGGT+AGG | + | 23852:7670-7689 | MS.gene013121:intron | 40.0% | |
CTCCTCCAATAATAGAAGCT+TGG | - | 23852:8367-8386 | None:intergenic | 40.0% | |
CTGGGATTCTTGTTCTGTTA+AGG | + | 23852:7153-7172 | MS.gene013121:CDS | 40.0% | |
GAACAAGAGAATGTTCTCCT+AGG | + | 23852:7094-7113 | MS.gene013121:CDS | 40.0% | |
GACCAAGCTTCTATTATTGG+AGG | + | 23852:8362-8381 | MS.gene013121:CDS | 40.0% | |
GCAAAATCTCCATGCAAACT+GGG | + | 23852:7135-7154 | MS.gene013121:CDS | 40.0% | |
GGCAGACATTGAAGTTACAA+TGG | + | 23852:8601-8620 | MS.gene013121:CDS | 40.0% | |
GGTGACCAAGCTTCTATTAT+TGG | + | 23852:8359-8378 | MS.gene013121:CDS | 40.0% | |
GTGAAGAATTCAGCAAAAGG+TGG | - | 23852:8488-8507 | None:intergenic | 40.0% | |
! | CAAGAGTGCAAAGAACAAAG+AGG | + | 23852:7309-7328 | MS.gene013121:CDS | 40.0% |
! | GTTGATAAGCCAGTTCTTGT+TGG | - | 23852:8984-9003 | None:intergenic | 40.0% |
!! | TGAGTGAGCTTTAGGTTGTT+TGG | + | 23852:7866-7885 | MS.gene013121:intron | 40.0% |
!!! | CCGTTTTTTGAGTGAGCTTT+AGG | + | 23852:7858-7877 | MS.gene013121:intron | 40.0% |
AAGAACCATATCATCGACCG+TGG | - | 23852:8738-8757 | None:intergenic | 45.0% | |
CAGCCCATTGTTTGTGTTCT+TGG | - | 23852:8580-8599 | None:intergenic | 45.0% | |
GAATTGATTGGAGCAGGTAG+AGG | + | 23852:8894-8913 | MS.gene013121:intron | 45.0% | |
GGGTATGAATTGATTGGAGC+AGG | + | 23852:8888-8907 | MS.gene013121:intron | 45.0% | |
TGATCAACGGTGCAGATTTC+AGG | - | 23852:7211-7230 | None:intergenic | 45.0% | |
TGTTACCACGGTCGATGATA+TGG | + | 23852:8730-8749 | MS.gene013121:CDS | 45.0% | |
!! | AGAACACAAACAATGGGCTG+TGG | + | 23852:8580-8599 | MS.gene013121:CDS | 45.0% |
!! | GTTGCACTTGTTGTGTACTG+AGG | - | 23852:8515-8534 | None:intergenic | 45.0% |
!!! | ATTTTAAATTTACTTAATTA+TGG | + | 23852:7606-7625 | MS.gene013121:intron | 5.0% |
AACGGTGCAGATTTCAGGAG+AGG | - | 23852:7206-7225 | None:intergenic | 50.0% | |
AAGGACGGTCCAACAAGAAC+TGG | + | 23852:8972-8991 | MS.gene013121:CDS | 50.0% | |
CAACAGCAACTGCAACGTGT+AGG | + | 23852:7269-7288 | MS.gene013121:CDS | 50.0% | |
TGATTGGAGCAGGTAGAGGA+GGG | + | 23852:8898-8917 | MS.gene013121:intron | 50.0% | |
TTGATTGGAGCAGGTAGAGG+AGG | + | 23852:8897-8916 | MS.gene013121:intron | 50.0% | |
! | TGCAGTTGCTGTTGCTTCCA+CGG | - | 23852:7263-7282 | None:intergenic | 50.0% |
GATTGGAGCAGGTAGAGGAG+GGG | + | 23852:8899-8918 | MS.gene013121:intron | 55.0% | |
GGGGAGTCAGCTGAATAGTG+TGG | + | 23852:8918-8937 | MS.gene013121:CDS | 55.0% | |
GTTGCTTCCACGGTGGAAGA+AGG | - | 23852:7253-7272 | None:intergenic | 55.0% | |
! | AGTTGCTGTTGCTTCCACGG+TGG | - | 23852:7260-7279 | None:intergenic | 55.0% |
GCTTCCACGGTGGAAGAAGG+AGG | - | 23852:7250-7269 | None:intergenic | 60.0% | |
TCCACGGTGGAAGAAGGAGG+AGG | - | 23852:7247-7266 | None:intergenic | 60.0% | |
TCCTCCTCCTTCTTCCACCG+TGG | + | 23852:7243-7262 | MS.gene013121:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
23852 | gene | 6986 | 9011 | 6986 | ID=MS.gene013121 |
23852 | mRNA | 6986 | 9011 | 6986 | ID=MS.gene013121.t1;Parent=MS.gene013121 |
23852 | exon | 6986 | 7444 | 6986 | ID=MS.gene013121.t1.exon1;Parent=MS.gene013121.t1 |
23852 | CDS | 6986 | 7444 | 6986 | ID=cds.MS.gene013121.t1;Parent=MS.gene013121.t1 |
23852 | exon | 8359 | 8775 | 8359 | ID=MS.gene013121.t1.exon2;Parent=MS.gene013121.t1 |
23852 | CDS | 8359 | 8775 | 8359 | ID=cds.MS.gene013121.t1;Parent=MS.gene013121.t1 |
23852 | exon | 8910 | 9011 | 8910 | ID=MS.gene013121.t1.exon3;Parent=MS.gene013121.t1 |
23852 | CDS | 8910 | 9011 | 8910 | ID=cds.MS.gene013121.t1;Parent=MS.gene013121.t1 |
Gene Sequence |
Protein sequence |