AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003142.t1 MTR_2g027130 96.918 584 15 1 1 581 1 584 0.0 1097
MS.gene003142.t1 MTR_4g134110 58.844 571 210 7 11 578 2 550 0.0 551
MS.gene003142.t1 MTR_3g060660 43.009 565 310 7 8 565 11 570 7.58e-106 332
MS.gene003142.t1 MTR_3g060660 42.582 519 291 4 51 565 44 559 1.27e-92 298
MS.gene003142.t1 MTR_3g007920 39.506 567 330 7 9 565 12 575 4.52e-89 289
MS.gene003142.t1 MTR_5g096080 38.624 567 335 7 9 565 12 575 5.58e-89 288
MS.gene003142.t1 MTR_4g133450 52.978 319 138 4 262 578 6 314 3.57e-78 250
MS.gene003142.t1 MTR_3g101660 29.208 606 361 17 1 562 270 851 2.30e-29 124
MS.gene003142.t1 MTR_1g019490 26.644 593 375 16 14 563 259 834 1.07e-23 106
MS.gene003142.t1 MTR_7g072550 27.018 285 205 2 282 565 150 432 8.98e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003142.t1 AT1G12150 45.536 560 274 8 11 563 8 543 6.76e-128 386
MS.gene003142.t1 AT1G12150 45.536 560 274 8 11 563 8 543 6.76e-128 386
MS.gene003142.t1 AT5G55860 41.725 568 316 6 6 565 8 568 2.32e-85 279
MS.gene003142.t1 AT4G17210 34.220 564 312 7 10 563 12 526 2.32e-68 231
MS.gene003142.t1 AT2G26570 26.514 611 380 15 8 575 153 737 1.56e-27 118
MS.gene003142.t1 AT2G26570 26.514 611 380 15 8 575 153 737 1.56e-27 118
MS.gene003142.t1 AT4G33390 28.088 591 375 16 8 561 138 715 7.83e-24 106
MS.gene003142.t1 AT1G45545 24.830 588 354 18 8 562 142 674 1.15e-13 74.7
MS.gene003142.t1 AT1G45545 24.830 588 354 18 8 562 143 675 1.21e-13 74.7
MS.gene003142.t1 AT5G42880 25.251 598 362 18 6 565 115 665 1.95e-13 73.9

Find 77 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTTGATGCTTTCA+TGG 0.211121 2.1:+63382331 None:intergenic
CAATTCTTGAAGTGTTATAT+TGG 0.291401 2.1:+63382685 None:intergenic
TCGAGACTTTGTGTTTCTTC+AGG 0.293848 2.1:+63382173 None:intergenic
TGAAACAAGTGCTGAAATTC+AGG 0.294476 2.1:-63382138 MS.gene003142:CDS
CAATCTGTCAAGGCTGCTAT+TGG 0.319700 2.1:-63383404 MS.gene003142:CDS
TTCTGTCGAGTTAATAACTT+TGG 0.330943 2.1:-63382072 MS.gene003142:CDS
TGCCGCTTTGGAGGCGAAAT+TGG 0.336907 2.1:-63382438 MS.gene003142:CDS
TTGGAGAACTATCTCTGTTT+CGG 0.342248 2.1:+63383480 None:intergenic
TTGGTGAAGTTCGTGTCAAC+CGG 0.365739 2.1:-63383376 MS.gene003142:CDS
AAGGCTGCTATTGGTTTGTT+TGG 0.369565 2.1:-63383395 MS.gene003142:CDS
CAAAGAAAAGGAAGATTCTA+TGG 0.384617 2.1:-63381868 MS.gene003142:CDS
ACCGGAGAATCTGTCTCCTT+TGG 0.398317 2.1:+63383461 None:intergenic
TATTTCTTCAGACAAAGCTT+TGG 0.407479 2.1:+63381704 None:intergenic
TGAGAGTCATTGTCAAGAAA+TGG 0.411564 2.1:-63381829 MS.gene003142:CDS
GAAAGAACAAGAGGAACTTA+AGG 0.412694 2.1:-63381949 MS.gene003142:CDS
TTCTAGCTCTGCAGCGAGAT+TGG 0.424207 2.1:+63381249 None:intergenic
CAGCAACAGATCTGGCTTTG+AGG 0.433288 2.1:-63381377 MS.gene003142:CDS
TGGCGTCAAGAAGAACAAAA+AGG 0.451952 2.1:-63381300 MS.gene003142:CDS
AGAAATAGATAATAAATTGA+TGG 0.464169 2.1:-63382216 MS.gene003142:CDS
AATAAAAGCAGCAACAGATC+TGG 0.466708 2.1:-63381385 MS.gene003142:CDS
TGATAGAATTATTTCTATCC+CGG 0.469818 2.1:+63383357 None:intergenic
TACCTTGTAGTTCGCCGGTT+AGG 0.471965 2.1:+63381892 None:intergenic
AGAGATGAGAATGAAAGCTC+AGG 0.473161 2.1:-63381751 MS.gene003142:CDS
GTGTGATATGCAGAATGTAT+TGG 0.475004 2.1:-63382816 MS.gene003142:intron
AAAGGAGACTCAGCTTCTCT+TGG 0.484746 2.1:-63382792 MS.gene003142:CDS
TATGCAGAATGTATTGGAAA+AGG 0.485982 2.1:-63382810 MS.gene003142:intron
GGCAGGAGAAGCTCAGCGTT+CGG 0.487792 2.1:-63382402 MS.gene003142:CDS
GCTCTTGCTGCAAACCTAAC+CGG 0.490559 2.1:-63381906 MS.gene003142:CDS
AAGCGATAGGGTATGAAGCT+TGG 0.500293 2.1:-63382559 MS.gene003142:CDS
AGAACTAGAACATGCAAGAA+AGG 0.501099 2.1:-63382531 MS.gene003142:CDS
AGATTCTCCGGTGGGAGAGA+GGG 0.502913 2.1:-63383450 MS.gene003142:CDS
AGCGCTTATCGAGCTTGATA+AGG 0.503328 2.1:-63382708 MS.gene003142:CDS
TTGGCTGCATTTCAGATGGC+AGG 0.508839 2.1:-63382419 MS.gene003142:CDS
TCAGCAAAACTAGCAGTTGA+AGG 0.511221 2.1:-63381336 MS.gene003142:CDS
ACTACAAGGTAGCAAAGAAA+AGG 0.511736 2.1:-63381880 MS.gene003142:CDS
TCCAAAGGAGACAGATTCTC+CGG 0.522645 2.1:-63383462 MS.gene003142:CDS
TTTGCTACCTTGTAGTTCGC+CGG 0.522771 2.1:+63381887 None:intergenic
AGAAACAACTGCAATGGCTC+AGG 0.523434 2.1:-63381478 MS.gene003142:CDS
GATGAATTTGCTGCTCTAAG+TGG 0.529272 2.1:-63381537 MS.gene003142:CDS
CAGATTCTCCGGTGGGAGAG+AGG 0.533950 2.1:-63383451 MS.gene003142:CDS
AAAGATCAATGAACTTTCAA+AGG 0.534366 2.1:-63382363 MS.gene003142:CDS
GGCTTTGAGGAATGCAGAGA+TGG 0.535386 2.1:-63381364 MS.gene003142:CDS
AGAAGAACAGATTAAAGCGA+TGG 0.537448 2.1:-63382282 MS.gene003142:CDS
TCAAGCCAAAGAACTCGAAA+AGG 0.537588 2.1:-63382594 MS.gene003142:CDS
GCTTTGTCTGAAGAAATAGA+AGG 0.539516 2.1:-63381699 MS.gene003142:CDS
GCAGCCTTGACAGATTGAAA+TGG 0.548681 2.1:+63383410 None:intergenic
AACAACTGCAATGGCTCAGG+TGG 0.549356 2.1:-63381475 MS.gene003142:CDS
ACAAGTGAAGAAAGAACAAG+AGG 0.551605 2.1:-63381958 MS.gene003142:CDS
GCGCTATCACAGAAAGCGAT+AGG 0.554886 2.1:-63382572 MS.gene003142:CDS
CGCTATCACAGAAAGCGATA+GGG 0.555926 2.1:-63382571 MS.gene003142:CDS
TGTTAATACGATCTTACCAC+TGG 0.561538 2.1:+63381563 None:intergenic
GAAATTGGCTGCATTTCAGA+TGG 0.565691 2.1:-63382423 MS.gene003142:CDS
TCAATCTCCCTCTCTCCCAC+CGG 0.566121 2.1:+63383443 None:intergenic
AGAATCAAAGCAATCTGCAA+TGG 0.566703 2.1:-63382639 MS.gene003142:CDS
GAAGAACAGATTAAAGCGAT+GGG 0.567926 2.1:-63382281 MS.gene003142:CDS
AGCTTCACTGAGAAACCTTG+TGG 0.568186 2.1:-63382003 MS.gene003142:CDS
CTTACCACTGGAATCAGAAA+CGG 0.572360 2.1:+63381575 None:intergenic
AACCTAACCGGCGAACTACA+AGG 0.573065 2.1:-63381894 MS.gene003142:CDS
TGGTGAAGTTCGTGTCAACC+GGG 0.573487 2.1:-63383375 MS.gene003142:CDS
ACAAGAGGAACTTAAGGAGA+AGG 0.576875 2.1:-63381943 MS.gene003142:CDS
CTGTCTTAAGCGAATCCACA+AGG 0.577030 2.1:+63381988 None:intergenic
AATGTGAAGATTTGATTGAG+AGG 0.600637 2.1:-63381503 MS.gene003142:CDS
ATCTGCAATGGAAGAAAGTG+AGG 0.605339 2.1:-63382627 MS.gene003142:CDS
AGCACCATTTCAATCTGTCA+AGG 0.619152 2.1:-63383414 MS.gene003142:CDS
CAAGCAGTTATCATTCGAGA+CGG 0.628969 2.1:-63381796 MS.gene003142:CDS
GCGTTCGGCGAAATTGAACT+CGG 0.630622 2.1:-63382387 MS.gene003142:CDS
AAGGAGACAGATTCTCCGGT+GGG 0.630732 2.1:-63383458 MS.gene003142:CDS
TATCAAGAGAAGATCTTCAG+AGG 0.632667 2.1:-63383339 MS.gene003142:intron
AAACAGAGATAGTTCTCCAA+AGG 0.633433 2.1:-63383477 MS.gene003142:CDS
GAGGACAGAAACAACTGCAA+TGG 0.637220 2.1:-63381484 MS.gene003142:CDS
GTCTCCGTTTCTGATTCCAG+TGG 0.639257 2.1:-63381579 MS.gene003142:CDS
TTGAAGGTGAATTAAAGAAG+TGG 0.644395 2.1:-63381320 MS.gene003142:CDS
TAAGGAGAAGGAACAAGCAG+CGG 0.645739 2.1:-63381931 MS.gene003142:CDS
AGCCAATTTCGCCTCCAAAG+CGG 0.663081 2.1:+63382436 None:intergenic
AAAGGAGACAGATTCTCCGG+TGG 0.663875 2.1:-63383459 MS.gene003142:CDS
TGAAGAAACACAAAGTCTCG+AGG 0.675914 2.1:-63382171 MS.gene003142:CDS
AAGTTGTTGTCTGACGCACA+AGG 0.705883 2.1:-63381606 MS.gene003142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAGATAATAAATTGA+TGG - chr2.1:63382523-63382542 MS.gene003142:CDS 15.0%
!! ATTTGTAATATTAAGGATAG+CGG + chr2.1:63381438-63381457 None:intergenic 20.0%
!! CATGGTTATTTGTAATATTA+AGG + chr2.1:63381445-63381464 None:intergenic 20.0%
!! CTTAATATTACAAATAACCA+TGG - chr2.1:63381443-63381462 MS.gene003142:CDS 20.0%
!!! AAACTTTTACAAAACTTCAA+AGG - chr2.1:63382499-63382518 MS.gene003142:CDS 20.0%
! AAAGATCAATGAACTTTCAA+AGG - chr2.1:63382376-63382395 MS.gene003142:CDS 25.0%
! TGTGCTTCTTGTATTAAAAT+TGG + chr2.1:63381791-63381810 None:intergenic 25.0%
! TTATTCGCAAAATTTAACCA+TGG + chr2.1:63381463-63381482 None:intergenic 25.0%
!! AATAGCAGTTTGTTCAAATT+CGG - chr2.1:63381683-63381702 MS.gene003142:CDS 25.0%
!! CAATTCTTGAAGTGTTATAT+TGG + chr2.1:63382057-63382076 None:intergenic 25.0%
!! TATTTTGTTAAGTTCTTGCT+TGG + chr2.1:63382267-63382286 None:intergenic 25.0%
!!! TGATAGAATTATTTCTATCC+CGG + chr2.1:63381385-63381404 None:intergenic 25.0%
AATGTGAAGATTTGATTGAG+AGG - chr2.1:63383236-63383255 MS.gene003142:intron 30.0%
ACAAAAAGGTTTGGATTTGT+CGG - chr2.1:63383453-63383472 MS.gene003142:CDS 30.0%
CAAAGAAAAGGAAGATTCTA+TGG - chr2.1:63382871-63382890 MS.gene003142:intron 30.0%
TACAATATAGCACTATAGCA+TGG + chr2.1:63381709-63381728 None:intergenic 30.0%
TATGCAGAATGTATTGGAAA+AGG - chr2.1:63381929-63381948 MS.gene003142:CDS 30.0%
TATTTATGAGTTATGCGTCA+AGG - chr2.1:63381889-63381908 MS.gene003142:CDS 30.0%
TATTTCTTCAGACAAAGCTT+TGG + chr2.1:63383038-63383057 None:intergenic 30.0%
TCAAGAAGAACAAAAAGGTT+TGG - chr2.1:63383444-63383463 MS.gene003142:CDS 30.0%
TTCTGTCGAGTTAATAACTT+TGG - chr2.1:63382667-63382686 MS.gene003142:CDS 30.0%
TTGAAGGTGAATTAAAGAAG+TGG - chr2.1:63383419-63383438 MS.gene003142:CDS 30.0%
!!! ATCTAGTTCTTTTACAGTTG+TGG + chr2.1:63382240-63382259 None:intergenic 30.0%
!!! TTTTCAAGTTTGCGTGATTT+TGG - chr2.1:63381826-63381845 MS.gene003142:CDS 30.0%
AAACAGAGATAGTTCTCCAA+AGG - chr2.1:63381262-63381281 MS.gene003142:CDS 35.0%
AATAAAAGCAGCAACAGATC+TGG - chr2.1:63383354-63383373 MS.gene003142:CDS 35.0%
ACAAGTGAAGAAAGAACAAG+AGG - chr2.1:63382781-63382800 MS.gene003142:CDS 35.0%
ACTACAAGGTAGCAAAGAAA+AGG - chr2.1:63382859-63382878 MS.gene003142:intron 35.0%
AGAACTAGAACATGCAAGAA+AGG - chr2.1:63382208-63382227 MS.gene003142:CDS 35.0%
AGAAGAACAGATTAAAGCGA+TGG - chr2.1:63382457-63382476 MS.gene003142:CDS 35.0%
AGAATCAAAGCAATCTGCAA+TGG - chr2.1:63382100-63382119 MS.gene003142:CDS 35.0%
AGATGAAAAAAGAGCTGTTG+AGG - chr2.1:63383105-63383124 MS.gene003142:intron 35.0%
ATCTTCAGAGGTAAACATCA+CGG - chr2.1:63381412-63381431 MS.gene003142:CDS 35.0%
GAAAGAACAAGAGGAACTTA+AGG - chr2.1:63382790-63382809 MS.gene003142:CDS 35.0%
GAAGAACAGATTAAAGCGAT+GGG - chr2.1:63382458-63382477 MS.gene003142:CDS 35.0%
GCTTTGTCTGAAGAAATAGA+AGG - chr2.1:63383040-63383059 MS.gene003142:intron 35.0%
GTGTGATATGCAGAATGTAT+TGG - chr2.1:63381923-63381942 MS.gene003142:CDS 35.0%
TATCAAGAGAAGATCTTCAG+AGG - chr2.1:63381400-63381419 MS.gene003142:CDS 35.0%
TGAGAGTCATTGTCAAGAAA+TGG - chr2.1:63382910-63382929 MS.gene003142:intron 35.0%
TGTTAATACGATCTTACCAC+TGG + chr2.1:63383179-63383198 None:intergenic 35.0%
TTCTTCTCTTGATGCTTTCA+TGG + chr2.1:63382411-63382430 None:intergenic 35.0%
TTGGAGAACTATCTCTGTTT+CGG + chr2.1:63381262-63381281 None:intergenic 35.0%
! TTTTGACGTCTATGCGATTA+AGG + chr2.1:63381502-63381521 None:intergenic 35.0%
!! TGAAACAAGTGCTGAAATTC+AGG - chr2.1:63382601-63382620 MS.gene003142:CDS 35.0%
AAGCATTCAATCTTCGAAGC+AGG + chr2.1:63381581-63381600 None:intergenic 40.0%
ACAAGAGGAACTTAAGGAGA+AGG - chr2.1:63382796-63382815 MS.gene003142:CDS 40.0%
AGAGATGAGAATGAAAGCTC+AGG - chr2.1:63382988-63383007 MS.gene003142:intron 40.0%
AGCACCATTTCAATCTGTCA+AGG - chr2.1:63381325-63381344 MS.gene003142:CDS 40.0%
AGCATTCAATCTTCGAAGCA+GGG + chr2.1:63381580-63381599 None:intergenic 40.0%
ATCTGCAATGGAAGAAAGTG+AGG - chr2.1:63382112-63382131 MS.gene003142:CDS 40.0%
CAAGCAGTTATCATTCGAGA+CGG - chr2.1:63382943-63382962 MS.gene003142:intron 40.0%
CTTACCACTGGAATCAGAAA+CGG + chr2.1:63383167-63383186 None:intergenic 40.0%
GAAATTGGCTGCATTTCAGA+TGG - chr2.1:63382316-63382335 MS.gene003142:CDS 40.0%
GAAGCAGGGTTATGACAAAA+TGG + chr2.1:63381566-63381585 None:intergenic 40.0%
TCAAGCCAAAGAACTCGAAA+AGG - chr2.1:63382145-63382164 MS.gene003142:CDS 40.0%
TCAGCAAAACTAGCAGTTGA+AGG - chr2.1:63383403-63383422 MS.gene003142:CDS 40.0%
TCGAGACTTTGTGTTTCTTC+AGG + chr2.1:63382569-63382588 None:intergenic 40.0%
TGAAGAAACACAAAGTCTCG+AGG - chr2.1:63382568-63382587 MS.gene003142:CDS 40.0%
TGCTTCGAAGATTGAATGCT+TGG - chr2.1:63381580-63381599 MS.gene003142:CDS 40.0%
TGGCGTCAAGAAGAACAAAA+AGG - chr2.1:63383439-63383458 MS.gene003142:CDS 40.0%
!! AAGGCTGCTATTGGTTTGTT+TGG - chr2.1:63381344-63381363 MS.gene003142:CDS 40.0%
!! ACAAGATTTTGATGCCGCTT+TGG - chr2.1:63382289-63382308 MS.gene003142:CDS 40.0%
!! GATGAATTTGCTGCTCTAAG+TGG - chr2.1:63383202-63383221 MS.gene003142:intron 40.0%
AAAGGAGACTCAGCTTCTCT+TGG - chr2.1:63381947-63381966 MS.gene003142:CDS 45.0%
AAGCGATAGGGTATGAAGCT+TGG - chr2.1:63382180-63382199 MS.gene003142:CDS 45.0%
AAGTTGTTGTCTGACGCACA+AGG - chr2.1:63383133-63383152 MS.gene003142:intron 45.0%
AGAAACAACTGCAATGGCTC+AGG - chr2.1:63383261-63383280 MS.gene003142:intron 45.0%
AGCGCTTATCGAGCTTGATA+AGG - chr2.1:63382031-63382050 MS.gene003142:CDS 45.0%
AGCTTCACTGAGAAACCTTG+TGG - chr2.1:63382736-63382755 MS.gene003142:CDS 45.0%
CAATCTGTCAAGGCTGCTAT+TGG - chr2.1:63381335-63381354 MS.gene003142:CDS 45.0%
CGCTATCACAGAAAGCGATA+GGG - chr2.1:63382168-63382187 MS.gene003142:CDS 45.0%
CGTCAAAAACCTTGATGTCG+CGG - chr2.1:63381514-63381533 MS.gene003142:CDS 45.0%
CTGTCTTAAGCGAATCCACA+AGG + chr2.1:63382754-63382773 None:intergenic 45.0%
GAGGACAGAAACAACTGCAA+TGG - chr2.1:63383255-63383274 MS.gene003142:intron 45.0%
GATTGAATGCTTGGTCCCAA+AGG - chr2.1:63381589-63381608 MS.gene003142:CDS 45.0%
GCAGCCTTGACAGATTGAAA+TGG + chr2.1:63381332-63381351 None:intergenic 45.0%
TAAGGAGAAGGAACAAGCAG+CGG - chr2.1:63382808-63382827 MS.gene003142:intron 45.0%
TCCAAAGGAGACAGATTCTC+CGG - chr2.1:63381277-63381296 MS.gene003142:CDS 45.0%
TTGGTGAAGTTCGTGTCAAC+CGG - chr2.1:63381363-63381382 MS.gene003142:CDS 45.0%
TTTGCTACCTTGTAGTTCGC+CGG + chr2.1:63382855-63382874 None:intergenic 45.0%
!! CAGTTTTAACCGCGACATCA+AGG + chr2.1:63381526-63381545 None:intergenic 45.0%
!!! AGATTTTGATGCCGCTTTGG+AGG - chr2.1:63382292-63382311 MS.gene003142:CDS 45.0%
!!! TAGCGCCTTTTCGAGTTCTT+TGG + chr2.1:63382153-63382172 None:intergenic 45.0%
AAAGGAGACAGATTCTCCGG+TGG - chr2.1:63381280-63381299 MS.gene003142:CDS 50.0%
AACAACTGCAATGGCTCAGG+TGG - chr2.1:63383264-63383283 MS.gene003142:intron 50.0%
AACCTAACCGGCGAACTACA+AGG - chr2.1:63382845-63382864 MS.gene003142:intron 50.0%
AAGGAGACAGATTCTCCGGT+GGG - chr2.1:63381281-63381300 MS.gene003142:CDS 50.0%
ACCGGAGAATCTGTCTCCTT+TGG + chr2.1:63381281-63381300 None:intergenic 50.0%
AGCCAATTTCGCCTCCAAAG+CGG + chr2.1:63382306-63382325 None:intergenic 50.0%
CGACTAACTAGCTACCAGCT+GGG + chr2.1:63381620-63381639 None:intergenic 50.0%
GCGCTATCACAGAAAGCGAT+AGG - chr2.1:63382167-63382186 MS.gene003142:CDS 50.0%
GCGTTCGGCGAAATTGAACT+CGG - chr2.1:63382352-63382371 MS.gene003142:CDS 50.0%
GCTCTTGCTGCAAACCTAAC+CGG - chr2.1:63382833-63382852 MS.gene003142:intron 50.0%
GTCTCCGTTTCTGATTCCAG+TGG - chr2.1:63383160-63383179 MS.gene003142:intron 50.0%
TGGTGAAGTTCGTGTCAACC+GGG - chr2.1:63381364-63381383 MS.gene003142:CDS 50.0%
TTGGCTGCATTTCAGATGGC+AGG - chr2.1:63382320-63382339 MS.gene003142:CDS 50.0%
! TACCTTGTAGTTCGCCGGTT+AGG + chr2.1:63382850-63382869 None:intergenic 50.0%
!! CAGCAACAGATCTGGCTTTG+AGG - chr2.1:63383362-63383381 MS.gene003142:CDS 50.0%
!! GGCTTTGAGGAATGCAGAGA+TGG - chr2.1:63383375-63383394 MS.gene003142:CDS 50.0%
ACCAGCTGGGTCATGCCTTT+GGG + chr2.1:63381607-63381626 None:intergenic 55.0%
AGATTCTCCGGTGGGAGAGA+GGG - chr2.1:63381289-63381308 MS.gene003142:CDS 55.0%
GCGACTAACTAGCTACCAGC+TGG + chr2.1:63381621-63381640 None:intergenic 55.0%
TACCAGCTGGGTCATGCCTT+TGG + chr2.1:63381608-63381627 None:intergenic 55.0%
TCAATCTCCCTCTCTCCCAC+CGG + chr2.1:63381299-63381318 None:intergenic 55.0%
!! TGCCGCTTTGGAGGCGAAAT+TGG - chr2.1:63382301-63382320 MS.gene003142:CDS 55.0%
CAGATTCTCCGGTGGGAGAG+AGG - chr2.1:63381288-63381307 MS.gene003142:CDS 60.0%
GGCAGGAGAAGCTCAGCGTT+CGG - chr2.1:63382337-63382356 MS.gene003142:CDS 60.0%
! TCCCAAAGGCATGACCCAGC+TGG - chr2.1:63381603-63381622 MS.gene003142:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 63381251 63383510 63381251 ID=MS.gene003142
chr2.1 mRNA 63381251 63383510 63381251 ID=MS.gene003142.t1;Parent=MS.gene003142
chr2.1 exon 63383340 63383510 63383340 ID=MS.gene003142.t1.exon1;Parent=MS.gene003142.t1
chr2.1 CDS 63383340 63383510 63383340 ID=cds.MS.gene003142.t1;Parent=MS.gene003142.t1
chr2.1 exon 63381251 63382825 63381251 ID=MS.gene003142.t1.exon2;Parent=MS.gene003142.t1
chr2.1 CDS 63381251 63382825 63381251 ID=cds.MS.gene003142.t1;Parent=MS.gene003142.t1
Gene Sequence

>MS.gene003142

ATGAGTTTCCGAAACAGAGATAGTTCTCCAAAGGAGACAGATTCTCCGGTGGGAGAGAGGGAGATTGACACAAGAGCACCATTTCAATCTGTCAAGGCTGCTATTGGTTTGTTTGGTGAAGTTCGTGTCAACCGGGATAGAAATAATTCTATCAAGAGAAGATCTTCAGAGGTAAACATCACGGCCGCTATCCTTAATATTACAAATAACCATGGTTAAATTTTGCGAATAATTGCAGTCAAATGCAGCCTTAATCGCATAGACGTCAAAAACCTTGATGTCGCGGTTAAAACTGCAGTTGCTAGTTGCAGACCATTTTGTCATAACCCTGCTTCGAAGATTGAATGCTTGGTCCCAAAGGCATGACCCAGCTGGTAGCTAGTTAGTCGCTTACATAGTTTTAATCAGTGTTGTCAACTGAGAATCGCAGAAAATAGCAGTTTGTTCAAATTCGGCCATGCTATAGTGCTATATTGTATTGCACAACAATAGCGATTTGTTCGAATTCTGTTATGCAATAGCTGTTATTTGACAATGCCAATTTTAATACAAGAAGCACACACAACATGAGAAGATTTTCAAGTTTGCGTGATTTTGGAATTCAGAAATTTTATCATTTTTCATTGTGTTAGTGTCATTATTTATGAGTTATGCGTCAAGGTCATTAACTTTGTGTGATATGCAGAATGTATTGGAAAAGGAGACTCAGCTTCTCTTGGCTCAAAGAGAACTGAACAAGATAAAGAAAAAGCTTGAAAGTGCTGAGAGTACAAAAGCTAAAGCGCTTATCGAGCTTGATAAGGCCAATATAACACTTCAAGAATTGACAAAGAAACTCAACACTGTGAGAGAATCAAAGCAATCTGCAATGGAAGAAAGTGAGGTTGTGAAGAATCAAGCCAAAGAACTCGAAAAGGCGCTATCACAGAAAGCGATAGGGTATGAAGCTTGGAAACAAGAACTAGAACATGCAAGAAAGGAGTACACCACAACTGTAAAAGAACTAGATGCTTCCAAGCAAGAACTTAACAAAATAAGACAAGATTTTGATGCCGCTTTGGAGGCGAAATTGGCTGCATTTCAGATGGCAGGAGAAGCTCAGCGTTCGGCGAAATTGAACTCGGAAAAGATCAATGAACTTTCAAAGGAAATTGCAACCATGAAAGCATCAAGAGAAGAACTCAAGCTTGCAACTGCACAAGCACAAGAAGAACAGATTAAAGCGATGGGAGAAAGAGAAGAAAAGTTAAACTTTTACAAAACTTCAAAGGAAGAAATAGATAATAAATTGATGGAAGTGAAGAATGAGTATGATCCTGAAGAAACACAAAGTCTCGAGGCAAAACTTGCTGAAACAAGTGCTGAAATTCAGGTTCTTCAAGAGAAGATAAAAGAGTTTCGTAATTCTGAGATGAATTCTGTCGAGTTAATAACTTTGGAAATCAAAGAAGCAACAAAGACACTGCAAGAAATTTCTGAAGAAGAAGCTTCACTGAGAAACCTTGTGGATTCGCTTAAGACAGAATTAGAACAAGTGAAGAAAGAACAAGAGGAACTTAAGGAGAAGGAACAAGCAGCGGAAGCTCTTGCTGCAAACCTAACCGGCGAACTACAAGGTAGCAAAGAAAAGGAAGATTCTATGGAAAACAAAGAATCTAATGAGAGTCATTGTCAAGAAATGGAGTTGAAAATCAAGCAGTTATCATTCGAGACGGAAAATGCAAGAAAAGAAGAAGAAGAGATGAGAATGAAAGCTCAGGAACTGAAACAAGAAGCTGAGAATTCCAAAGCTTTGTCTGAAGAAATAGAAGGTAAACTAGAGATTTTATTTAAACAAGCTGAAGAAGCAAAAGCAGATGAAAAAAGAGCTGTTGAGGAGATGAAGTTGTTGTCTGACGCACAAGGTAGTGTCTCCGTTTCTGATTCCAGTGGTAAGATCGTATTAACAGTTGATGAATTTGCTGCTCTAAGTGGAAAAATCAATGAATGTGAAGATTTGATTGAGAGGACAGAAACAACTGCAATGGCTCAGGTGGAAGCAATCAACACAAGAAGAAATGAAGTGAACAAAAAAGTCGAAGCTAATCTTCAAGCAATCGAAGAAATAAAAGCAGCAACAGATCTGGCTTTGAGGAATGCAGAGATGGCAGACTCAGCAAAACTAGCAGTTGAAGGTGAATTAAAGAAGTGGCGTCAAGAAGAACAAAAAGGTTTGGATTTGTCGGATAACTCTTCAACACCAATCTCGCTGCAGAGCTAG
Protein sequence

>MS.gene003142.t1

MSFRNRDSSPKETDSPVGEREIDTRAPFQSVKAAIGLFGEVRVNRDRNNSIKRRSSENVLEKETQLLLAQRELNKIKKKLESAESTKAKALIELDKANITLQELTKKLNTVRESKQSAMEESEVVKNQAKELEKALSQKAIGYEAWKQELEHARKEYTTTVKELDASKQELNKIRQDFDAALEAKLAAFQMAGEAQRSAKLNSEKINELSKEIATMKASREELKLATAQAQEEQIKAMGEREEKLNFYKTSKEEIDNKLMEVKNEYDPEETQSLEAKLAETSAEIQVLQEKIKEFRNSEMNSVELITLEIKEATKTLQEISEEEASLRNLVDSLKTELEQVKKEQEELKEKEQAAEALAANLTGELQGSKEKEDSMENKESNESHCQEMELKIKQLSFETENARKEEEEMRMKAQELKQEAENSKALSEEIEGKLEILFKQAEEAKADEKRAVEEMKLLSDAQGSVSVSDSSGKIVLTVDEFAALSGKINECEDLIERTETTAMAQVEAINTRRNEVNKKVEANLQAIEEIKAATDLALRNAEMADSAKLAVEGELKKWRQEEQKGLDLSDNSSTPISLQS