Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003753.t1 | AES89100.2 | 97.9 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 1.10E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003753.t1 | Q8GUH2 | 39.3 | 196 | 100 | 6 | 36 | 221 | 42 | 228 | 2.0e-28 | 127.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003753.t1 | G7JG61 | 97.9 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 7.8e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79923 | MS.gene003753 | PPI |
| MS.gene92099 | MS.gene003753 | PPI |
| MS.gene003753 | MS.gene019686 | PPI |
| MS.gene003753 | MS.gene056832 | PPI |
| MS.gene003753 | MS.gene000647 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003753.t1 | MTR_4g070020 | 97.881 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 1.00e-171 | 473 |
| MS.gene003753.t1 | MTR_4g070020 | 97.881 | 236 | 4 | 1 | 1 | 235 | 1 | 236 | 2.22e-170 | 471 |
| MS.gene003753.t1 | MTR_1g022190 | 49.754 | 203 | 86 | 4 | 26 | 224 | 55 | 245 | 9.18e-64 | 199 |
| MS.gene003753.t1 | MTR_1g022190 | 50.246 | 203 | 85 | 4 | 26 | 224 | 30 | 220 | 3.81e-63 | 199 |
| MS.gene003753.t1 | MTR_1g022190 | 50.246 | 203 | 85 | 4 | 26 | 224 | 55 | 245 | 7.04e-63 | 199 |
| MS.gene003753.t1 | MTR_1g022190 | 50.246 | 203 | 85 | 4 | 26 | 224 | 60 | 250 | 1.05e-62 | 199 |
| MS.gene003753.t1 | MTR_8g028630 | 40.816 | 196 | 103 | 4 | 29 | 221 | 19 | 204 | 2.59e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003753.t1 | AT1G19400 | 54.425 | 226 | 97 | 3 | 13 | 235 | 10 | 232 | 1.04e-80 | 242 |
| MS.gene003753.t1 | AT1G19400 | 54.425 | 226 | 97 | 3 | 13 | 235 | 10 | 232 | 6.79e-80 | 242 |
| MS.gene003753.t1 | AT1G19400 | 54.425 | 226 | 97 | 3 | 13 | 235 | 10 | 232 | 6.79e-80 | 242 |
| MS.gene003753.t1 | AT1G19400 | 54.425 | 226 | 97 | 3 | 13 | 235 | 10 | 232 | 6.79e-80 | 242 |
| MS.gene003753.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 1.72e-74 | 226 |
| MS.gene003753.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 1.19e-73 | 226 |
| MS.gene003753.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 1.19e-73 | 226 |
| MS.gene003753.t1 | AT1G75180 | 56.477 | 193 | 82 | 1 | 41 | 231 | 42 | 234 | 2.25e-73 | 224 |
| MS.gene003753.t1 | AT1G01500 | 40.099 | 202 | 100 | 7 | 36 | 227 | 42 | 232 | 1.88e-36 | 131 |
Find 56 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGGCACAAAGTTCTTTA+AGG | 0.155540 | 4.2:+36881187 | MS.gene003753:CDS |
| GATACCCTTCTTGAAGTTAA+TGG | 0.212761 | 4.2:+36880912 | MS.gene003753:CDS |
| GAGAATGATGCAAATGAAAA+TGG | 0.217056 | 4.2:+36881362 | MS.gene003753:CDS |
| TCCTTCTGCGCTTGCTTTGC+AGG | 0.233001 | 4.2:+36881391 | MS.gene003753:CDS |
| GAGAATTCGTATAAGGTTAA+TGG | 0.283457 | 4.2:+36880711 | MS.gene003753:CDS |
| GGAAATGGACCAAGTGAAAA+TGG | 0.283915 | 4.2:+36880732 | MS.gene003753:CDS |
| ATTGCTGTTACATAATTCTA+AGG | 0.316159 | 4.2:-36881099 | None:intergenic |
| CTCATATCAACCCTCGATAA+AGG | 0.321091 | 4.2:+36880779 | MS.gene003753:CDS |
| AGAAGGGTATCAGGATTTAA+AGG | 0.331368 | 4.2:-36880900 | None:intergenic |
| GGAGAAGCAATTGTTGTTGC+CGG | 0.344534 | 4.2:+36881208 | MS.gene003753:CDS |
| AAAGATAAGCTTCTTCTGTT+TGG | 0.350138 | 4.2:+36881074 | MS.gene003753:CDS |
| TTAACTTCAAGAAGGGTATC+AGG | 0.353127 | 4.2:-36880909 | None:intergenic |
| TCGTATAAGGTTAATGGAAA+TGG | 0.363071 | 4.2:+36880717 | MS.gene003753:CDS |
| GTTAGAGAATCAAATTCTAA+TGG | 0.378979 | 4.2:+36881128 | MS.gene003753:CDS |
| TATATTGCCGGGTCCTTCTC+TGG | 0.379377 | 4.2:+36881257 | MS.gene003753:CDS |
| CGTTACCGTGGTTAGACATA+AGG | 0.381604 | 4.2:+36880805 | MS.gene003753:CDS |
| ACAATTGAGGTCTATATTGC+CGG | 0.393367 | 4.2:+36881245 | MS.gene003753:CDS |
| TTGTAAGCACTGATAGTATA+AGG | 0.394406 | 4.2:+36881018 | MS.gene003753:CDS |
| CGCGATGGAGAATTCGTATA+AGG | 0.406902 | 4.2:+36880704 | None:intergenic |
| TTCTTGAAGTTAATGGTGTT+CGG | 0.422504 | 4.2:+36880919 | MS.gene003753:CDS |
| TGATTAAGTGTGAGAATCTC+AGG | 0.428692 | 4.2:-36880873 | None:intergenic |
| CGGAGTAGTTTATATTCTGA+TGG | 0.435949 | 4.2:+36880939 | MS.gene003753:CDS |
| GCAATATAGACCTCAATTGT+TGG | 0.437528 | 4.2:-36881242 | None:intergenic |
| GGATTCCAACCCTTCTCAAA+AGG | 0.443968 | 4.2:+36880961 | MS.gene003753:CDS |
| TCCTTAAAGAACTTTGTGCC+TGG | 0.447833 | 4.2:-36881188 | None:intergenic |
| GGATAGGGTGGATAGAAAAT+CGG | 0.450168 | 4.2:+36880983 | MS.gene003753:CDS |
| TGTGAGTCGAATATAATTCC+AGG | 0.452189 | 4.2:+36881170 | MS.gene003753:CDS |
| TCATATCAACCCTCGATAAA+GGG | 0.470195 | 4.2:+36880780 | MS.gene003753:CDS |
| AGAATGATGCAAATGAAAAT+GGG | 0.470852 | 4.2:+36881363 | MS.gene003753:CDS |
| CAACCCTTCTCAAAAGGGAT+AGG | 0.480345 | 4.2:+36880967 | MS.gene003753:CDS |
| CAAATTCTAATGGACAAAGT+TGG | 0.492533 | 4.2:+36881138 | MS.gene003753:CDS |
| GTTACCGTGGTTAGACATAA+GGG | 0.505953 | 4.2:+36880806 | MS.gene003753:CDS |
| GATTCCAACCCTTCTCAAAA+GGG | 0.526688 | 4.2:+36880962 | MS.gene003753:CDS |
| GGAGTAGTTTATATTCTGAT+GGG | 0.528712 | 4.2:+36880940 | MS.gene003753:CDS |
| ACCTGCAAAGCAAGCGCAGA+AGG | 0.534939 | 4.2:-36881392 | None:intergenic |
| AACCCTTCTCAAAAGGGATA+GGG | 0.548703 | 4.2:+36880968 | MS.gene003753:CDS |
| GAGTGGTAGTGTGAAGTTTG+AGG | 0.549063 | 4.2:+36881043 | MS.gene003753:CDS |
| CTCTACTCTTCCAACAATTG+AGG | 0.556408 | 4.2:+36881232 | MS.gene003753:CDS |
| GAACACCATTAACTTCAAGA+AGG | 0.569037 | 4.2:-36880917 | None:intergenic |
| CAATTGAGGTCTATATTGCC+GGG | 0.582339 | 4.2:+36881246 | MS.gene003753:CDS |
| TCTGGAATTGCATTCAACGC+CGG | 0.588676 | 4.2:-36881341 | None:intergenic |
| AAAATGGATACTCTATTGCT+AGG | 0.589815 | 4.2:+36880748 | MS.gene003753:CDS |
| CGATAAAGGGTTCGTTACCG+TGG | 0.592561 | 4.2:+36880793 | MS.gene003753:CDS |
| AAGGTCTTCGTTAAGATGAT+CGG | 0.592566 | 4.2:-36881284 | None:intergenic |
| CGGAGTGCCAGAGAAGGACC+CGG | 0.592882 | 4.2:-36881264 | None:intergenic |
| GATGCAAATGAAAATGGGAA+AGG | 0.596141 | 4.2:+36881368 | MS.gene003753:CDS |
| AACACCATTAACTTCAAGAA+GGG | 0.596194 | 4.2:-36880916 | None:intergenic |
| CCTTCTCAAAAGGGATAGGG+TGG | 0.600087 | 4.2:+36880971 | MS.gene003753:CDS |
| ATTGTTGGAAGAGTAGAGTC+CGG | 0.603903 | 4.2:-36881227 | None:intergenic |
| CGGTAACGAACCCTTTATCG+AGG | 0.628590 | 4.2:-36880790 | None:intergenic |
| ACTGATAGTATAAGGATGAG+TGG | 0.634943 | 4.2:+36881026 | MS.gene003753:CDS |
| GATGATCGGAGTGCCAGAGA+AGG | 0.637274 | 4.2:-36881270 | None:intergenic |
| GGTAACGAACCCTTTATCGA+GGG | 0.642976 | 4.2:-36880789 | None:intergenic |
| AACACCCTTATGTCTAACCA+CGG | 0.647619 | 4.2:-36880810 | None:intergenic |
| TTAGAATTATGTAACAGCAA+TGG | 0.648523 | 4.2:+36881101 | MS.gene003753:CDS |
| AAGTGTGAGAATCTCAGGAG+TGG | 0.662685 | 4.2:-36880868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATATATTATATAGTTT+TGG | + | chr4.2:36882472-36882491 | MS.gene003753:intron | 10.0% |
| !! | AGCATTTACATAAAATAATA+AGG | - | chr4.2:36882095-36882114 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAATCTTGTCA+AGG | - | chr4.2:36882005-36882024 | None:intergenic | 15.0% |
| !! | ATTTAAATAAGCACATGAAA+AGG | - | chr4.2:36881440-36881459 | None:intergenic | 20.0% |
| !! | GATATAACTGTAAATTATCT+TGG | + | chr4.2:36881835-36881854 | MS.gene003753:intron | 20.0% |
| !!! | AGGAATTATCTATAATTTGT+TGG | - | chr4.2:36882075-36882094 | None:intergenic | 20.0% |
| !!! | GGAATTATCTATAATTTGTT+GGG | - | chr4.2:36882074-36882093 | None:intergenic | 20.0% |
| ! | AGAATGATGCAAATGAAAAT+GGG | + | chr4.2:36881363-36881382 | MS.gene003753:CDS | 25.0% |
| ! | ATATTTATGACCAAACCAAA+TGG | + | chr4.2:36882025-36882044 | MS.gene003753:intron | 25.0% |
| ! | GTTAGAGAATCAAATTCTAA+TGG | + | chr4.2:36881128-36881147 | MS.gene003753:CDS | 25.0% |
| ! | TTAGAATTATGTAACAGCAA+TGG | + | chr4.2:36881101-36881120 | MS.gene003753:CDS | 25.0% |
| ! | TTCTTCATAAGATTTCCATT+TGG | - | chr4.2:36882043-36882062 | None:intergenic | 25.0% |
| !! | ATTGCTGTTACATAATTCTA+AGG | - | chr4.2:36881102-36881121 | None:intergenic | 25.0% |
| !! | TACAAAGTGTTCTTAAATAG+TGG | + | chr4.2:36881610-36881629 | MS.gene003753:intron | 25.0% |
| !!! | TCTATAATTTGTTGGGAAAA+TGG | - | chr4.2:36882067-36882086 | None:intergenic | 25.0% |
| !!! | TTATTTTATGTAAATGCTGC+AGG | + | chr4.2:36882097-36882116 | MS.gene003753:intron | 25.0% |
| AAAAACAGCTAACCTTAGTT+CGG | + | chr4.2:36882393-36882412 | MS.gene003753:intron | 30.0% | |
| AAAATGGATACTCTATTGCT+AGG | + | chr4.2:36880748-36880767 | MS.gene003753:CDS | 30.0% | |
| AAAGATAAGCTTCTTCTGTT+TGG | + | chr4.2:36881074-36881093 | MS.gene003753:CDS | 30.0% | |
| AACACCATTAACTTCAAGAA+GGG | - | chr4.2:36880919-36880938 | None:intergenic | 30.0% | |
| AGACATTAACATGTTGTCTT+TGG | - | chr4.2:36882435-36882454 | None:intergenic | 30.0% | |
| ATACTCGTTAAATCATACCA+AGG | + | chr4.2:36882290-36882309 | MS.gene003753:intron | 30.0% | |
| ATTCAAGCAACAAGTTAACA+AGG | - | chr4.2:36881492-36881511 | None:intergenic | 30.0% | |
| CATAAGATTTCCATTTGGTT+TGG | - | chr4.2:36882038-36882057 | None:intergenic | 30.0% | |
| GACATTAACATGTTGTCTTT+GGG | - | chr4.2:36882434-36882453 | None:intergenic | 30.0% | |
| GAGAATGATGCAAATGAAAA+TGG | + | chr4.2:36881362-36881381 | MS.gene003753:CDS | 30.0% | |
| GAGAATTCGTATAAGGTTAA+TGG | + | chr4.2:36880711-36880730 | MS.gene003753:CDS | 30.0% | |
| GGAGTAGTTTATATTCTGAT+GGG | + | chr4.2:36880940-36880959 | MS.gene003753:CDS | 30.0% | |
| GTTCTCAAAAAAGACATACA+AGG | + | chr4.2:36881315-36881334 | MS.gene003753:CDS | 30.0% | |
| TCGTATAAGGTTAATGGAAA+TGG | + | chr4.2:36880717-36880736 | MS.gene003753:CDS | 30.0% | |
| TGTTTGTCATACATGTAATC+TGG | - | chr4.2:36882125-36882144 | None:intergenic | 30.0% | |
| TTCTTGAAGTTAATGGTGTT+CGG | + | chr4.2:36880919-36880938 | MS.gene003753:CDS | 30.0% | |
| ! | CAAATTCTAATGGACAAAGT+TGG | + | chr4.2:36881138-36881157 | MS.gene003753:CDS | 30.0% |
| ! | GATTTGTTCAAATCCCTAAA+GGG | - | chr4.2:36881563-36881582 | None:intergenic | 30.0% |
| ! | TTTTCATTTGCATCATTCTC+TGG | - | chr4.2:36881362-36881381 | None:intergenic | 30.0% |
| !! | ATAGAGTATCCATTTTCACT+TGG | - | chr4.2:36880744-36880763 | None:intergenic | 30.0% |
| !! | ATTGGCTCAACGTAATTTTA+TGG | + | chr4.2:36881720-36881739 | MS.gene003753:intron | 30.0% |
| !! | TTGTAAGCACTGATAGTATA+AGG | + | chr4.2:36881018-36881037 | MS.gene003753:CDS | 30.0% |
| !! | TTTTTGAGAACTAAGATGCA+AGG | - | chr4.2:36881306-36881325 | None:intergenic | 30.0% |
| !!! | ACATAAGGGTGTTTTATGTA+AGG | + | chr4.2:36880820-36880839 | MS.gene003753:CDS | 30.0% |
| !!! | CATAAGGGTGTTTTATGTAA+GGG | + | chr4.2:36880821-36880840 | MS.gene003753:CDS | 30.0% |
| AAAAAGACATACAAGGAAGC+CGG | + | chr4.2:36881322-36881341 | MS.gene003753:CDS | 35.0% | |
| AAGGTCTTCGTTAAGATGAT+CGG | - | chr4.2:36881287-36881306 | None:intergenic | 35.0% | |
| ACAATTGAGGTCTATATTGC+CGG | + | chr4.2:36881245-36881264 | MS.gene003753:CDS | 35.0% | |
| ACTGATAGTATAAGGATGAG+TGG | + | chr4.2:36881026-36881045 | MS.gene003753:CDS | 35.0% | |
| ATTATGTTCCATCTCCTACT+AGG | - | chr4.2:36881807-36881826 | None:intergenic | 35.0% | |
| ATTGGACTTAGTGTTTGTCT+TGG | + | chr4.2:36882248-36882267 | MS.gene003753:intron | 35.0% | |
| CGGAGTAGTTTATATTCTGA+TGG | + | chr4.2:36880939-36880958 | MS.gene003753:CDS | 35.0% | |
| CTTAGTGTTTGTCTTGGAAT+CGG | + | chr4.2:36882254-36882273 | MS.gene003753:intron | 35.0% | |
| GAACACCATTAACTTCAAGA+AGG | - | chr4.2:36880920-36880939 | None:intergenic | 35.0% | |
| GATACCCTTCTTGAAGTTAA+TGG | + | chr4.2:36880912-36880931 | MS.gene003753:CDS | 35.0% | |
| GATGCAAATGAAAATGGGAA+AGG | + | chr4.2:36881368-36881387 | MS.gene003753:CDS | 35.0% | |
| GCAATATAGACCTCAATTGT+TGG | - | chr4.2:36881245-36881264 | None:intergenic | 35.0% | |
| TCATATCAACCCTCGATAAA+GGG | + | chr4.2:36880780-36880799 | MS.gene003753:CDS | 35.0% | |
| TGATATGCGATTGACAATAC+AGG | + | chr4.2:36881682-36881701 | MS.gene003753:intron | 35.0% | |
| TGATTAAGTGTGAGAATCTC+AGG | - | chr4.2:36880876-36880895 | None:intergenic | 35.0% | |
| TGTGAGTCGAATATAATTCC+AGG | + | chr4.2:36881170-36881189 | MS.gene003753:CDS | 35.0% | |
| TTTGAGAAATAGCTATCCTC+CGG | + | chr4.2:36881915-36881934 | MS.gene003753:intron | 35.0% | |
| ! | AACTATTTTCATCACTCGTC+AGG | - | chr4.2:36881981-36882000 | None:intergenic | 35.0% |
| ! | ATGCACTGACATAGTTAAAG+AGG | - | chr4.2:36881466-36881485 | None:intergenic | 35.0% |
| ! | CATGATGATGAGGATTATCA+CGG | + | chr4.2:36882143-36882162 | MS.gene003753:intron | 35.0% |
| ! | CGATTTGTTCAAATCCCTAA+AGG | - | chr4.2:36881564-36881583 | None:intergenic | 35.0% |
| ! | GTATGACAAACATGATGATG+AGG | + | chr4.2:36882133-36882152 | MS.gene003753:intron | 35.0% |
| !! | AGAAGGGTATCAGGATTTAA+AGG | - | chr4.2:36880903-36880922 | None:intergenic | 35.0% |
| !! | GAACTAAGGTTAGCTGTTTT+TGG | - | chr4.2:36882394-36882413 | None:intergenic | 35.0% |
| !! | TTAACTTCAAGAAGGGTATC+AGG | - | chr4.2:36880912-36880931 | None:intergenic | 35.0% |
| !! | TTATCTTGGCTCTTTTTCTG+AGG | + | chr4.2:36881849-36881868 | MS.gene003753:intron | 35.0% |
| !!! | TAGCTGTTTTTGGATCAAGA+GGG | - | chr4.2:36882384-36882403 | None:intergenic | 35.0% |
| !!! | TTAGCTGTTTTTGGATCAAG+AGG | - | chr4.2:36882385-36882404 | None:intergenic | 35.0% |
| AACACCCTTATGTCTAACCA+CGG | - | chr4.2:36880813-36880832 | None:intergenic | 40.0% | |
| AACCCTTCTCAAAAGGGATA+GGG | + | chr4.2:36880968-36880987 | MS.gene003753:CDS | 40.0% | |
| AATAGTGTATCGCAGAACAG+TGG | - | chr4.2:36881587-36881606 | None:intergenic | 40.0% | |
| AGAATAGCCGTCTTCTGAAT+TGG | - | chr4.2:36882325-36882344 | None:intergenic | 40.0% | |
| AGATAAAGATGGCCGAACTA+AGG | - | chr4.2:36882408-36882427 | None:intergenic | 40.0% | |
| ATTGTTGGAAGAGTAGAGTC+CGG | - | chr4.2:36881230-36881249 | None:intergenic | 40.0% | |
| CAATTGAGGTCTATATTGCC+GGG | + | chr4.2:36881246-36881265 | MS.gene003753:CDS | 40.0% | |
| CGTATGCTGTTCTTGTGTAT+AGG | - | chr4.2:36882169-36882188 | None:intergenic | 40.0% | |
| CTCATATCAACCCTCGATAA+AGG | + | chr4.2:36880779-36880798 | MS.gene003753:CDS | 40.0% | |
| CTCTACTCTTCCAACAATTG+AGG | + | chr4.2:36881232-36881251 | MS.gene003753:CDS | 40.0% | |
| GAACTTTCATGGTTTAACGC+CGG | + | chr4.2:36882206-36882225 | MS.gene003753:intron | 40.0% | |
| GATTCCAACCCTTCTCAAAA+GGG | + | chr4.2:36880962-36880981 | MS.gene003753:CDS | 40.0% | |
| GCTATGGCATTGTACTTTAG+TGG | + | chr4.2:36881634-36881653 | MS.gene003753:intron | 40.0% | |
| GGAAATGGACCAAGTGAAAA+TGG | + | chr4.2:36880732-36880751 | MS.gene003753:CDS | 40.0% | |
| GGAGTCGTTTGAATATGACA+TGG | + | chr4.2:36881741-36881760 | MS.gene003753:intron | 40.0% | |
| GGATAGGGTGGATAGAAAAT+CGG | + | chr4.2:36880983-36881002 | MS.gene003753:CDS | 40.0% | |
| GTTACCGTGGTTAGACATAA+GGG | + | chr4.2:36880806-36880825 | MS.gene003753:CDS | 40.0% | |
| GTTCTTAAATAGTGGCGCTA+TGG | + | chr4.2:36881618-36881637 | MS.gene003753:intron | 40.0% | |
| TAGTTCGGCCATCTTTATCT+TGG | + | chr4.2:36882408-36882427 | MS.gene003753:intron | 40.0% | |
| TCCAGGCACAAAGTTCTTTA+AGG | + | chr4.2:36881187-36881206 | MS.gene003753:CDS | 40.0% | |
| TCCTTAAAGAACTTTGTGCC+TGG | - | chr4.2:36881191-36881210 | None:intergenic | 40.0% | |
| TCTTTGGGCCAAGATAAAGA+TGG | - | chr4.2:36882419-36882438 | None:intergenic | 40.0% | |
| ! | AGGTCTAGCGTTGCTTTAAT+TGG | + | chr4.2:36881702-36881721 | MS.gene003753:intron | 40.0% |
| AAGTGTGAGAATCTCAGGAG+TGG | - | chr4.2:36880871-36880890 | None:intergenic | 45.0% | |
| ACAAGAACAGCATACGCTGA+CGG | + | chr4.2:36882173-36882192 | MS.gene003753:intron | 45.0% | |
| ACTATAGCGCTATGCCCTTT+AGG | + | chr4.2:36881546-36881565 | MS.gene003753:intron | 45.0% | |
| AGTGCCGCAATTTGACAACA+CGG | - | chr4.2:36881529-36881548 | None:intergenic | 45.0% | |
| CAACCCTTCTCAAAAGGGAT+AGG | + | chr4.2:36880967-36880986 | MS.gene003753:CDS | 45.0% | |
| CGTTACCGTGGTTAGACATA+AGG | + | chr4.2:36880805-36880824 | MS.gene003753:CDS | 45.0% | |
| CTATAGCGCTATGCCCTTTA+GGG | + | chr4.2:36881547-36881566 | MS.gene003753:intron | 45.0% | |
| GACTCCGTGTTGTCAAATTG+CGG | + | chr4.2:36881522-36881541 | MS.gene003753:intron | 45.0% | |
| GACTGATGTCACAACCTAGT+AGG | + | chr4.2:36881790-36881809 | MS.gene003753:intron | 45.0% | |
| GGATTCCAACCCTTCTCAAA+AGG | + | chr4.2:36880961-36880980 | MS.gene003753:CDS | 45.0% | |
| GGTAACGAACCCTTTATCGA+GGG | - | chr4.2:36880792-36880811 | None:intergenic | 45.0% | |
| GTTTGTCTTGGAATCGGCAT+TGG | + | chr4.2:36882260-36882279 | MS.gene003753:intron | 45.0% | |
| TGTCACAACCTAGTAGGAGA+TGG | + | chr4.2:36881796-36881815 | MS.gene003753:intron | 45.0% | |
| ! | AAATCATACCAAGGTGCCAC+CGG | + | chr4.2:36882299-36882318 | MS.gene003753:intron | 45.0% |
| ! | ATGGTTTAACGCCGGTGTTA+GGG | + | chr4.2:36882214-36882233 | MS.gene003753:intron | 45.0% |
| ! | GAGTGGTAGTGTGAAGTTTG+AGG | + | chr4.2:36881043-36881062 | MS.gene003753:CDS | 45.0% |
| ! | GGAGAAGCAATTGTTGTTGC+CGG | + | chr4.2:36881208-36881227 | MS.gene003753:CDS | 45.0% |
| ! | TCTGGAATTGCATTCAACGC+CGG | - | chr4.2:36881344-36881363 | None:intergenic | 45.0% |
| !! | CACCCTATCCCTTTTGAGAA+GGG | - | chr4.2:36880973-36880992 | None:intergenic | 45.0% |
| !! | CTATCCCTTTTGAGAAGGGT+TGG | - | chr4.2:36880969-36880988 | None:intergenic | 45.0% |
| !! | GTTAGGGTTGGTGTTGGTAT+TGG | + | chr4.2:36882230-36882249 | MS.gene003753:intron | 45.0% |
| ACCAACACCAACCCTAACAC+CGG | - | chr4.2:36882228-36882247 | None:intergenic | 50.0% | |
| CATGGTTTAACGCCGGTGTT+AGG | + | chr4.2:36882213-36882232 | MS.gene003753:intron | 50.0% | |
| CCTTCTCAAAAGGGATAGGG+TGG | + | chr4.2:36880971-36880990 | MS.gene003753:CDS | 50.0% | |
| CGATAAAGGGTTCGTTACCG+TGG | + | chr4.2:36880793-36880812 | MS.gene003753:CDS | 50.0% | |
| CGGTAACGAACCCTTTATCG+AGG | - | chr4.2:36880793-36880812 | None:intergenic | 50.0% | |
| GCGAAGATGGGGAACTTTCA+TGG | + | chr4.2:36882195-36882214 | MS.gene003753:intron | 50.0% | |
| TAGCCGTCTTCTGAATTGGC+CGG | - | chr4.2:36882321-36882340 | None:intergenic | 50.0% | |
| TATATTGCCGGGTCCTTCTC+TGG | + | chr4.2:36881257-36881276 | MS.gene003753:CDS | 50.0% | |
| TGACAACACGGAGTCACACA+TGG | - | chr4.2:36881517-36881536 | None:intergenic | 50.0% | |
| ! | CTTGGAATCGGCATTGGAGT+TGG | + | chr4.2:36882266-36882285 | MS.gene003753:intron | 50.0% |
| ! | TTTAACGCCGGTGTTAGGGT+TGG | + | chr4.2:36882218-36882237 | MS.gene003753:intron | 50.0% |
| !! | CCACCCTATCCCTTTTGAGA+AGG | - | chr4.2:36880974-36880993 | None:intergenic | 50.0% |
| ACCTGCAAAGCAAGCGCAGA+AGG | - | chr4.2:36881395-36881414 | None:intergenic | 55.0% | |
| ATACGCTGACGGCGAAGATG+GGG | + | chr4.2:36882184-36882203 | MS.gene003753:intron | 55.0% | |
| CATACGCTGACGGCGAAGAT+GGG | + | chr4.2:36882183-36882202 | MS.gene003753:intron | 55.0% | |
| CCACCGGCCAATTCAGAAGA+CGG | + | chr4.2:36882315-36882334 | MS.gene003753:intron | 55.0% | |
| TCCTTCTGCGCTTGCTTTGC+AGG | + | chr4.2:36881391-36881410 | MS.gene003753:CDS | 55.0% | |
| ! | GATGATCGGAGTGCCAGAGA+AGG | - | chr4.2:36881273-36881292 | None:intergenic | 55.0% |
| CCGTCTTCTGAATTGGCCGG+TGG | - | chr4.2:36882318-36882337 | None:intergenic | 60.0% | |
| GCATACGCTGACGGCGAAGA+TGG | + | chr4.2:36882182-36882201 | MS.gene003753:intron | 60.0% | |
| TGAATTGGCCGGTGGCACCT+TGG | - | chr4.2:36882310-36882329 | None:intergenic | 60.0% | |
| !! | GCCGGTGTTAGGGTTGGTGT+TGG | + | chr4.2:36882224-36882243 | MS.gene003753:intron | 60.0% |
| GCCTGCATGTGCTCTCGAGC+CGG | - | chr4.2:36881937-36881956 | None:intergenic | 65.0% | |
| TGCATGTGCTCTCGAGCCGG+AGG | - | chr4.2:36881934-36881953 | None:intergenic | 65.0% | |
| ! | CGGAGTGCCAGAGAAGGACC+CGG | - | chr4.2:36881267-36881286 | None:intergenic | 65.0% |
| ! | TCCGGCTCGAGAGCACATGC+AGG | + | chr4.2:36881933-36881952 | MS.gene003753:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 36880708 | 36882547 | 36880708 | ID=MS.gene003753 |
| chr4.2 | mRNA | 36880708 | 36882547 | 36880708 | ID=MS.gene003753.t1;Parent=MS.gene003753 |
| chr4.2 | exon | 36880708 | 36881412 | 36880708 | ID=MS.gene003753.t1.exon1;Parent=MS.gene003753.t1 |
| chr4.2 | CDS | 36880708 | 36881412 | 36880708 | ID=cds.MS.gene003753.t1;Parent=MS.gene003753.t1 |
| chr4.2 | exon | 36882545 | 36882547 | 36882545 | ID=MS.gene003753.t1.exon2;Parent=MS.gene003753.t1 |
| chr4.2 | CDS | 36882545 | 36882547 | 36882545 | ID=cds.MS.gene003753.t1;Parent=MS.gene003753.t1 |
| Gene Sequence |
| Protein sequence |
