Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79923.t1 | XP_024629527.1 | 99.2 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 1.30E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79923.t1 | Q8GUH2 | 51.7 | 267 | 115 | 6 | 4 | 260 | 22 | 284 | 1.7e-68 | 260.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79923.t1 | A0A072TZ44 | 99.2 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 9.2e-145 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79923 | MS.gene45677 | PPI |
| MS.gene79923 | MS.gene003753 | PPI |
| MS.gene79923 | MS.gene23257 | PPI |
| MS.gene79923 | MS.gene23256 | PPI |
| MS.gene79923 | MS.gene003757 | PPI |
| MS.gene79923 | MS.gene056706 | PPI |
| MS.gene79923 | MS.gene50027 | PPI |
| MS.gene79923 | MS.gene003751 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79923.t1 | MTR_8g028630 | 99.231 | 260 | 2 | 0 | 1 | 260 | 1 | 260 | 0.0 | 530 |
| MS.gene79923.t1 | MTR_4g070020 | 36.059 | 269 | 147 | 7 | 3 | 260 | 14 | 268 | 5.51e-40 | 140 |
| MS.gene79923.t1 | MTR_4g070020 | 39.623 | 212 | 114 | 5 | 3 | 204 | 14 | 221 | 2.03e-39 | 137 |
| MS.gene79923.t1 | MTR_1g022190 | 38.235 | 204 | 117 | 6 | 26 | 227 | 68 | 264 | 6.48e-35 | 126 |
| MS.gene79923.t1 | MTR_1g022190 | 35.714 | 238 | 139 | 8 | 26 | 260 | 43 | 269 | 6.38e-34 | 125 |
| MS.gene79923.t1 | MTR_1g022190 | 35.714 | 238 | 139 | 8 | 26 | 260 | 68 | 294 | 9.86e-34 | 125 |
| MS.gene79923.t1 | MTR_1g022190 | 35.714 | 238 | 139 | 8 | 26 | 260 | 73 | 299 | 1.28e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79923.t1 | AT1G01500 | 54.065 | 246 | 101 | 5 | 25 | 260 | 41 | 284 | 1.34e-87 | 263 |
| MS.gene79923.t1 | AT1G19400 | 44.330 | 194 | 94 | 5 | 21 | 204 | 28 | 217 | 4.09e-43 | 147 |
| MS.gene79923.t1 | AT1G19400 | 42.512 | 207 | 104 | 5 | 8 | 204 | 16 | 217 | 3.94e-42 | 146 |
| MS.gene79923.t1 | AT1G19400 | 42.512 | 207 | 104 | 5 | 8 | 204 | 16 | 217 | 3.94e-42 | 146 |
| MS.gene79923.t1 | AT1G19400 | 42.512 | 207 | 104 | 5 | 8 | 204 | 16 | 217 | 3.94e-42 | 146 |
| MS.gene79923.t1 | AT1G75180 | 35.918 | 245 | 128 | 7 | 31 | 260 | 42 | 272 | 1.87e-37 | 134 |
| MS.gene79923.t1 | AT1G75180 | 35.918 | 245 | 128 | 7 | 31 | 260 | 42 | 272 | 1.87e-37 | 134 |
| MS.gene79923.t1 | AT1G75180 | 40.642 | 187 | 94 | 4 | 31 | 204 | 42 | 224 | 4.71e-36 | 129 |
| MS.gene79923.t1 | AT1G75180 | 39.336 | 211 | 106 | 6 | 31 | 223 | 42 | 248 | 1.60e-35 | 128 |
Find 76 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCCTAGACATGCTATTT+TGG | 0.221283 | 8.1:+73008609 | MS.gene79923:CDS |
| CGGAAGCGGTGGGGCGGAAG+AGG | 0.258564 | 8.1:-73008251 | None:intergenic |
| AAATGGGTCTGGTTGGGATA+TGG | 0.259376 | 8.1:+73008426 | MS.gene79923:CDS |
| GGAACGTTTGGATGTTGATT+TGG | 0.306297 | 8.1:+73008402 | MS.gene79923:CDS |
| TATGTTGCTGGATGTTGTTC+TGG | 0.312352 | 8.1:+73008538 | MS.gene79923:CDS |
| GCCATGATCTATGACTCTTT+AGG | 0.320834 | 8.1:-73008096 | None:intergenic |
| CCATGATCTATGACTCTTTA+GGG | 0.320915 | 8.1:-73008095 | None:intergenic |
| AATGATATCTTGCAGATAAC+AGG | 0.328847 | 8.1:+73011091 | MS.gene79923:intron |
| TAGGCCGAAGCTCGGTGTTT+CGG | 0.355279 | 8.1:+73008498 | MS.gene79923:CDS |
| TTGGATGTTGATTTGGGAAA+TGG | 0.363888 | 8.1:+73008409 | MS.gene79923:CDS |
| TCGGTTGAAGTTTATGTTGC+TGG | 0.364418 | 8.1:+73008526 | MS.gene79923:CDS |
| GAACGTTTGGATGTTGATTT+GGG | 0.367055 | 8.1:+73008403 | MS.gene79923:CDS |
| ATTTGGGAAATGGGTCTGGT+TGG | 0.371436 | 8.1:+73008419 | MS.gene79923:CDS |
| TACTCTCAAGAAATGTATCT+TGG | 0.371896 | 8.1:+73011163 | MS.gene79923:CDS |
| GTTGATTTGGGAAATGGGTC+TGG | 0.376873 | 8.1:+73008415 | MS.gene79923:CDS |
| CATATGCATTTCCTCATCTT+CGG | 0.377051 | 8.1:-73008641 | None:intergenic |
| GTTGATGATTATGATCTTGA+TGG | 0.384587 | 8.1:+73011121 | MS.gene79923:CDS |
| TTTGGGAAATGGGTCTGGTT+GGG | 0.394439 | 8.1:+73008420 | MS.gene79923:CDS |
| AGACTATTTCGTTGAGTCCT+AGG | 0.401816 | 8.1:+73008581 | MS.gene79923:CDS |
| GTGACATAGTGTTAAACATT+CGG | 0.402805 | 8.1:-73008173 | None:intergenic |
| GGTGGGGCGGAAGAGGGTGC+AGG | 0.410497 | 8.1:-73008244 | None:intergenic |
| ATCAATTGGATCGGGTTCTT+CGG | 0.413140 | 8.1:+73008468 | MS.gene79923:CDS |
| CATGTGGCGGTTGGATCAAT+TGG | 0.413914 | 8.1:+73008454 | MS.gene79923:CDS |
| ATGTGGGTCATTGGAACGTT+TGG | 0.415837 | 8.1:+73008390 | MS.gene79923:CDS |
| AATTCCACACCCCAAATTGC+AGG | 0.417732 | 8.1:+73008699 | MS.gene79923:CDS |
| GTTGTTTCTATGTGGGTCAT+TGG | 0.422646 | 8.1:+73008381 | MS.gene79923:CDS |
| ATATGCATTTCCTCATCTTC+GGG | 0.432151 | 8.1:-73008640 | None:intergenic |
| TGTCACCCAAAACGTGAAAT+CGG | 0.449971 | 8.1:+73008190 | MS.gene79923:CDS |
| GCGGAAGAGGGTGCAGGGAT+CGG | 0.458905 | 8.1:-73008238 | None:intergenic |
| TGACATAGTGTTAAACATTC+GGG | 0.462884 | 8.1:-73008172 | None:intergenic |
| CGGTCACGGCGGAGCGGAAG+CGG | 0.465550 | 8.1:-73008265 | None:intergenic |
| GCTCGGTGTTTCGGCTCCAT+CGG | 0.467166 | 8.1:+73008507 | MS.gene79923:CDS |
| TGGATGTTGATTTGGGAAAT+GGG | 0.473071 | 8.1:+73008410 | MS.gene79923:CDS |
| TCACGGCGGAGCGGAAGCGG+TGG | 0.478934 | 8.1:-73008262 | None:intergenic |
| ACGGCGGAGCGGAAGCGGTG+GGG | 0.485355 | 8.1:-73008260 | None:intergenic |
| GCGGTTGGATCAATTGGATC+GGG | 0.487227 | 8.1:+73008460 | MS.gene79923:CDS |
| AGATGAGGAAATGCATATGA+TGG | 0.488245 | 8.1:+73008645 | MS.gene79923:CDS |
| CACAGGTGGTGCTGAATTTG+AGG | 0.489245 | 8.1:+73008342 | MS.gene79923:CDS |
| GGAGCCGAAACACCGAGCTT+CGG | 0.493318 | 8.1:-73008502 | None:intergenic |
| TTGAGGTGTATGAGAAAGAT+GGG | 0.495788 | 8.1:+73008359 | MS.gene79923:CDS |
| GGCGGTTGGATCAATTGGAT+CGG | 0.495806 | 8.1:+73008459 | MS.gene79923:CDS |
| CACGGCGGAGCGGAAGCGGT+GGG | 0.497443 | 8.1:-73008261 | None:intergenic |
| CCCTAAAGAGTCATAGATCA+TGG | 0.503100 | 8.1:+73008095 | MS.gene79923:CDS |
| ACTGATAATGTGAGAATCAC+AGG | 0.510457 | 8.1:+73008325 | MS.gene79923:CDS |
| GCGGAGCGGAAGCGGTGGGG+CGG | 0.513735 | 8.1:-73008257 | None:intergenic |
| GATCATGTTAGTGCTATGAA+TGG | 0.524460 | 8.1:+73008673 | MS.gene79923:CDS |
| TTTGAGGTGTATGAGAAAGA+TGG | 0.524992 | 8.1:+73008358 | MS.gene79923:CDS |
| GTGGGGCGGAAGAGGGTGCA+GGG | 0.542253 | 8.1:-73008243 | None:intergenic |
| GCATCCAAAATAGCATGTCT+AGG | 0.543181 | 8.1:-73008613 | None:intergenic |
| TGTCTAGGAACTCTCCTCCT+AGG | 0.545690 | 8.1:-73008598 | None:intergenic |
| GGAAGCGGTGGGGCGGAAGA+GGG | 0.549741 | 8.1:-73008250 | None:intergenic |
| AGTACCTGCAATTTGGGGTG+TGG | 0.556500 | 8.1:-73008703 | None:intergenic |
| ATGGATTGTCATGTGGCGGT+TGG | 0.565137 | 8.1:+73008445 | MS.gene79923:CDS |
| GGAAATGCATATGATGGAGA+AGG | 0.566177 | 8.1:+73008651 | MS.gene79923:CDS |
| AAGATGGGTTGTTTCTATGT+GGG | 0.574943 | 8.1:+73008374 | MS.gene79923:CDS |
| GGATGCTATTCCCGAAGATG+AGG | 0.575827 | 8.1:+73008630 | MS.gene79923:CDS |
| AAAGATGGGTTGTTTCTATG+TGG | 0.576123 | 8.1:+73008373 | MS.gene79923:CDS |
| ATAGTCTTGCTCAAAATCAC+AGG | 0.588822 | 8.1:-73008565 | None:intergenic |
| GAAATGTATCTTGGCGAGGA+CGG | 0.589890 | 8.1:+73011172 | MS.gene79923:CDS |
| TTATGATCTTGATGGAAAGA+TGG | 0.594061 | 8.1:+73011129 | MS.gene79923:CDS |
| CACATTATCAGTGCTAACAT+AGG | 0.596347 | 8.1:-73008314 | None:intergenic |
| ACTCTTTATCGACACGGTCA+CGG | 0.610515 | 8.1:-73008279 | None:intergenic |
| GCAACATAAACTTCAACCGA+TGG | 0.620064 | 8.1:-73008523 | None:intergenic |
| ATGATATCTTGCAGATAACA+GGG | 0.625252 | 8.1:+73011092 | MS.gene79923:intron |
| TCAAGAAATGTATCTTGGCG+AGG | 0.631882 | 8.1:+73011168 | MS.gene79923:CDS |
| CTTGATGGAAAGATGGCGAA+TGG | 0.632312 | 8.1:+73011136 | MS.gene79923:CDS |
| CTATTTCGTTGAGTCCTAGG+AGG | 0.636486 | 8.1:+73008584 | MS.gene79923:CDS |
| GCGAGGACGGACAACTCACA+TGG | 0.636839 | 8.1:+73011185 | MS.gene79923:CDS |
| CAGCAGACTCTTTATCGACA+CGG | 0.638869 | 8.1:-73008285 | None:intergenic |
| GGATATGGATTGTCATGTGG+CGG | 0.640013 | 8.1:+73008441 | MS.gene79923:CDS |
| TTGGGATATGGATTGTCATG+TGG | 0.651885 | 8.1:+73008438 | MS.gene79923:CDS |
| TCGACACGGTCACGGCGGAG+CGG | 0.673707 | 8.1:-73008271 | None:intergenic |
| TGTCGATAAAGAGTCTGCTG+AGG | 0.707994 | 8.1:+73008288 | MS.gene79923:CDS |
| GGAACACTATCGATTAAACA+AGG | 0.709929 | 8.1:-73008151 | None:intergenic |
| CTTTATCGACACGGTCACGG+CGG | 0.771016 | 8.1:-73008276 | None:intergenic |
| GATAATGTGAGAATCACAGG+TGG | 0.820260 | 8.1:+73008328 | MS.gene79923:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAATATCTTTTAATTTT+AGG | + | chr8.1:73009727-73009746 | MS.gene79923:intron | 10.0% |
| !!! | AAAAATATTTGCCATTTTTT+TGG | + | chr8.1:73010151-73010170 | MS.gene79923:intron | 15.0% |
| !! | AAATGAATAAAATGCTTCTT+AGG | - | chr8.1:73008745-73008764 | None:intergenic | 20.0% |
| !! | ATTTCTCAATTTAAACAAGT+AGG | + | chr8.1:73008772-73008791 | MS.gene79923:intron | 20.0% |
| !! | TTAACATAATTGCATAATGA+AGG | - | chr8.1:73010901-73010920 | None:intergenic | 20.0% |
| !! | TTGAATTGTAAAAAAGTTTG+TGG | + | chr8.1:73008828-73008847 | MS.gene79923:intron | 20.0% |
| !! | TTGATTACAAATGTCAAATA+AGG | - | chr8.1:73009713-73009732 | None:intergenic | 20.0% |
| !!! | AACATTTTTATACTACAATC+CGG | + | chr8.1:73009494-73009513 | MS.gene79923:intron | 20.0% |
| !!! | AATCCATGATAACTTATTTT+AGG | - | chr8.1:73010224-73010243 | None:intergenic | 20.0% |
| !!! | ATCCATGATAACTTATTTTA+GGG | - | chr8.1:73010223-73010242 | None:intergenic | 20.0% |
| !!! | ATTTTTGATTGAGGTATTTT+AGG | + | chr8.1:73010714-73010733 | MS.gene79923:intron | 20.0% |
| !!! | GTTTAAATTTCAAGAGATTT+TGG | - | chr8.1:73010689-73010708 | None:intergenic | 20.0% |
| !!! | GTTTTATTTGTTGAGTTTAA+TGG | + | chr8.1:73008798-73008817 | MS.gene79923:intron | 20.0% |
| !!! | TTAGGCATATATTTTTCTTA+AGG | + | chr8.1:73009745-73009764 | MS.gene79923:intron | 20.0% |
| ! | AAAATCACTTTCGATTGAAA+TGG | + | chr8.1:73008977-73008996 | MS.gene79923:intron | 25.0% |
| ! | AAACTCAAAATGCTATAGAA+AGG | - | chr8.1:73009672-73009691 | None:intergenic | 25.0% |
| ! | ACAAAGAAAAGAAGTTCAAT+AGG | + | chr8.1:73010005-73010024 | MS.gene79923:intron | 25.0% |
| ! | AGTCTTTACAAAACATGTAT+TGG | + | chr8.1:73010570-73010589 | MS.gene79923:intron | 25.0% |
| ! | ATAAAACTATCGCTACATAA+AGG | - | chr8.1:73009444-73009463 | None:intergenic | 25.0% |
| ! | ATAAGGAATAACTGAAAGAA+GGG | - | chr8.1:73010453-73010472 | None:intergenic | 25.0% |
| ! | CAATCACAATAAGATACAAT+TGG | - | chr8.1:73008859-73008878 | None:intergenic | 25.0% |
| ! | GTCTATTATTGTCAGTTAAT+GGG | - | chr8.1:73009948-73009967 | None:intergenic | 25.0% |
| ! | TAATCACTCTCTCTATTTAT+AGG | + | chr8.1:73009900-73009919 | MS.gene79923:intron | 25.0% |
| ! | TACCCTAAAATAAGTTATCA+TGG | + | chr8.1:73010218-73010237 | MS.gene79923:intron | 25.0% |
| ! | TAGAAAGTTGAGTAATTTCA+CGG | - | chr8.1:73010948-73010967 | None:intergenic | 25.0% |
| ! | TTTATGTAGATGTTACTGAT+AGG | - | chr8.1:73009970-73009989 | None:intergenic | 25.0% |
| !! | AAGTTATCATGGATTAAGTT+TGG | + | chr8.1:73010229-73010248 | MS.gene79923:intron | 25.0% |
| !! | AGTTATCATGGATTAAGTTT+GGG | + | chr8.1:73010230-73010249 | MS.gene79923:intron | 25.0% |
| !! | ATACATGTTTTGTAAAGACT+AGG | - | chr8.1:73010570-73010589 | None:intergenic | 25.0% |
| !! | TACATGTTTTGTAAAGACTA+GGG | - | chr8.1:73010569-73010588 | None:intergenic | 25.0% |
| !! | TAGATATGTTTGCTAATAGA+GGG | + | chr8.1:73009774-73009793 | MS.gene79923:intron | 25.0% |
| !! | TTAGATATGTTTGCTAATAG+AGG | + | chr8.1:73009773-73009792 | MS.gene79923:intron | 25.0% |
| !! | TTCCTTATGCTTTTAATCAA+AGG | + | chr8.1:73010465-73010484 | MS.gene79923:intron | 25.0% |
| !!! | AAACATCAGATTTTTGATTG+AGG | + | chr8.1:73010705-73010724 | MS.gene79923:intron | 25.0% |
| !!! | AGTTTTAATTAACACTTTCG+AGG | + | chr8.1:73009687-73009706 | MS.gene79923:intron | 25.0% |
| !!! | TTTATGTAGCGATAGTTTTA+TGG | + | chr8.1:73009443-73009462 | MS.gene79923:intron | 25.0% |
| AAAAACATCATAACAGTGCT+TGG | + | chr8.1:73010750-73010769 | MS.gene79923:intron | 30.0% | |
| AAAACATCATAACAGTGCTT+GGG | + | chr8.1:73010751-73010770 | MS.gene79923:intron | 30.0% | |
| AATGATATCTTGCAGATAAC+AGG | + | chr8.1:73011091-73011110 | MS.gene79923:intron | 30.0% | |
| ATAGCTATTTGATCAACTTC+AGG | - | chr8.1:73009131-73009150 | None:intergenic | 30.0% | |
| ATGATATCTTGCAGATAACA+GGG | + | chr8.1:73011092-73011111 | MS.gene79923:intron | 30.0% | |
| CATAAGGAATAACTGAAAGA+AGG | - | chr8.1:73010454-73010473 | None:intergenic | 30.0% | |
| CCAAATGATTGACAATTTAC+AGG | - | chr8.1:73009634-73009653 | None:intergenic | 30.0% | |
| CCTGTAAATTGTCAATCATT+TGG | + | chr8.1:73009631-73009650 | MS.gene79923:intron | 30.0% | |
| CTAATAAGCTGTTTAGATCA+GGG | + | chr8.1:73009365-73009384 | MS.gene79923:intron | 30.0% | |
| CTGAAATGTTAAACCTTTCA+GGG | - | chr8.1:73009260-73009279 | None:intergenic | 30.0% | |
| GAGTTTATCACTATTAGCAT+TGG | - | chr8.1:73010324-73010343 | None:intergenic | 30.0% | |
| GGTCTATTATTGTCAGTTAA+TGG | - | chr8.1:73009949-73009968 | None:intergenic | 30.0% | |
| GTGACATAGTGTTAAACATT+CGG | - | chr8.1:73008176-73008195 | None:intergenic | 30.0% | |
| TAAGGAATAACTGAAAGAAG+GGG | - | chr8.1:73010452-73010471 | None:intergenic | 30.0% | |
| TACTCTCAAGAAATGTATCT+TGG | + | chr8.1:73011163-73011182 | MS.gene79923:CDS | 30.0% | |
| TCTAATAAGCTGTTTAGATC+AGG | + | chr8.1:73009364-73009383 | MS.gene79923:intron | 30.0% | |
| TGACATAGTGTTAAACATTC+GGG | - | chr8.1:73008175-73008194 | None:intergenic | 30.0% | |
| TTATGATCTTGATGGAAAGA+TGG | + | chr8.1:73011129-73011148 | MS.gene79923:CDS | 30.0% | |
| TTCACAGTCTGTCAATATAT+CGG | + | chr8.1:73010999-73011018 | MS.gene79923:intron | 30.0% | |
| ! | AAATAGCTATTTCGTGCTAT+AGG | + | chr8.1:73009141-73009160 | MS.gene79923:intron | 30.0% |
| ! | AGAGCTTTTGACCAAAAAAA+TGG | - | chr8.1:73010165-73010184 | None:intergenic | 30.0% |
| ! | AGCCTTTGATTAAAAGCATA+AGG | - | chr8.1:73010470-73010489 | None:intergenic | 30.0% |
| ! | GGTTTTTCTCTTGTAATCAA+CGG | + | chr8.1:73008211-73008230 | MS.gene79923:CDS | 30.0% |
| ! | TGCCTTTGTTTGTAATCAAA+GGG | - | chr8.1:73009849-73009868 | None:intergenic | 30.0% |
| ! | TTGCCTTTGTTTGTAATCAA+AGG | - | chr8.1:73009850-73009869 | None:intergenic | 30.0% |
| ! | TTTGTTAATGAACCCTGTTT+TGG | + | chr8.1:73010101-73010120 | MS.gene79923:intron | 30.0% |
| !! | AAAAAAGTACCTGCAATTTG+GGG | - | chr8.1:73008711-73008730 | None:intergenic | 30.0% |
| !! | AAAAACCGATTTCACGTTTT+GGG | - | chr8.1:73008198-73008217 | None:intergenic | 30.0% |
| !! | CAAAAAAGTACCTGCAATTT+GGG | - | chr8.1:73008712-73008731 | None:intergenic | 30.0% |
| !! | GTTGATGATTATGATCTTGA+TGG | + | chr8.1:73011121-73011140 | MS.gene79923:CDS | 30.0% |
| !! | TTATTGTCAGTTAATGGGTT+AGG | - | chr8.1:73009943-73009962 | None:intergenic | 30.0% |
| !!! | AATGTCGCTTTTGATTGAAA+TGG | + | chr8.1:73008927-73008946 | MS.gene79923:intron | 30.0% |
| !!! | ATAGTAGTGTTTTAGCATTG+CGG | + | chr8.1:73009005-73009024 | MS.gene79923:intron | 30.0% |
| !!! | CTCAACTTTCTACTTTTTGT+TGG | + | chr8.1:73010956-73010975 | MS.gene79923:intron | 30.0% |
| AAACAAAGGCAACACTTCAA+GGG | + | chr8.1:73009858-73009877 | MS.gene79923:intron | 35.0% | |
| AGAGAGTCTCGCAATAAAAA+AGG | + | chr8.1:73009602-73009621 | MS.gene79923:intron | 35.0% | |
| AGATGAGGAAATGCATATGA+TGG | + | chr8.1:73008645-73008664 | MS.gene79923:CDS | 35.0% | |
| ATAGAGAGAGTGATTAGAGA+AGG | - | chr8.1:73009896-73009915 | None:intergenic | 35.0% | |
| ATATGCATTTCCTCATCTTC+GGG | - | chr8.1:73008643-73008662 | None:intergenic | 35.0% | |
| ATCGGAGATTCATTCTTACT+AGG | - | chr8.1:73009536-73009555 | None:intergenic | 35.0% | |
| CACATTATCAGTGCTAACAT+AGG | - | chr8.1:73008317-73008336 | None:intergenic | 35.0% | |
| CAGCAATCACAAAAGAGAAT+AGG | - | chr8.1:73010394-73010413 | None:intergenic | 35.0% | |
| CATATGCATTTCCTCATCTT+CGG | - | chr8.1:73008644-73008663 | None:intergenic | 35.0% | |
| CCATATTCTTATCGAAGATG+GGG | + | chr8.1:73009816-73009835 | MS.gene79923:intron | 35.0% | |
| CCATGATCTATGACTCTTTA+GGG | - | chr8.1:73008098-73008117 | None:intergenic | 35.0% | |
| GAATTTCCAATCTCATCAGA+AGG | - | chr8.1:73010667-73010686 | None:intergenic | 35.0% | |
| GACTAAATATTGGTACAGTG+AGG | - | chr8.1:73010836-73010855 | None:intergenic | 35.0% | |
| GAGAGTCTCGCAATAAAAAA+GGG | + | chr8.1:73009603-73009622 | MS.gene79923:intron | 35.0% | |
| GATCATGTTAGTGCTATGAA+TGG | + | chr8.1:73008673-73008692 | MS.gene79923:CDS | 35.0% | |
| GCCATATTCTTATCGAAGAT+GGG | + | chr8.1:73009815-73009834 | MS.gene79923:intron | 35.0% | |
| GCTGAAATGTTAAACCTTTC+AGG | - | chr8.1:73009261-73009280 | None:intergenic | 35.0% | |
| GGTGCTCTTAGTAGATAATT+AGG | + | chr8.1:73010279-73010298 | MS.gene79923:intron | 35.0% | |
| GTAAGAATGAATCTCCGATT+TGG | + | chr8.1:73009537-73009556 | MS.gene79923:intron | 35.0% | |
| GTTCATTAACAAACCAGCAA+CGG | - | chr8.1:73010094-73010113 | None:intergenic | 35.0% | |
| TACAACTGCTGAAACCAAAT+CGG | - | chr8.1:73009554-73009573 | None:intergenic | 35.0% | |
| TAGAGAGAGTGATTAGAGAA+GGG | - | chr8.1:73009895-73009914 | None:intergenic | 35.0% | |
| TCCCCTTTGATTACAAACAA+AGG | + | chr8.1:73009844-73009863 | MS.gene79923:intron | 35.0% | |
| TGCCATATTCTTATCGAAGA+TGG | + | chr8.1:73009814-73009833 | MS.gene79923:intron | 35.0% | |
| TTCGATAAGAATATGGCAGT+TGG | - | chr8.1:73009812-73009831 | None:intergenic | 35.0% | |
| TTGAGGTGTATGAGAAAGAT+GGG | + | chr8.1:73008359-73008378 | MS.gene79923:CDS | 35.0% | |
| TTGTCTAATTTGACCACTTC+CGG | - | chr8.1:73010188-73010207 | None:intergenic | 35.0% | |
| ! | ACTGATAATGTGAGAATCAC+AGG | + | chr8.1:73008325-73008344 | MS.gene79923:CDS | 35.0% |
| ! | ATAGTCTTGCTCAAAATCAC+AGG | - | chr8.1:73008568-73008587 | None:intergenic | 35.0% |
| ! | ATGCTTTTAATCAAAGGCTG+AGG | + | chr8.1:73010471-73010490 | MS.gene79923:intron | 35.0% |
| ! | CAACTTTTGTCGAATGTTCT+AGG | + | chr8.1:73008900-73008919 | MS.gene79923:intron | 35.0% |
| ! | GCCTTTGTTTGTAATCAAAG+GGG | - | chr8.1:73009848-73009867 | None:intergenic | 35.0% |
| ! | GGAACACTATCGATTAAACA+AGG | - | chr8.1:73008154-73008173 | None:intergenic | 35.0% |
| ! | TATAGGCAGCATGCTTTATT+TGG | + | chr8.1:73009917-73009936 | MS.gene79923:intron | 35.0% |
| ! | TGCGAGACTCTCTTATTTAA+AGG | - | chr8.1:73009595-73009614 | None:intergenic | 35.0% |
| ! | TTTGAGGTGTATGAGAAAGA+TGG | + | chr8.1:73008358-73008377 | MS.gene79923:CDS | 35.0% |
| !! | AAAGATGGGTTGTTTCTATG+TGG | + | chr8.1:73008373-73008392 | MS.gene79923:CDS | 35.0% |
| !! | AAGATGGGTTGTTTCTATGT+GGG | + | chr8.1:73008374-73008393 | MS.gene79923:CDS | 35.0% |
| !! | AGTTCCTAGACATGCTATTT+TGG | + | chr8.1:73008609-73008628 | MS.gene79923:CDS | 35.0% |
| !! | CCAAAAAAGTACCTGCAATT+TGG | - | chr8.1:73008713-73008732 | None:intergenic | 35.0% |
| !! | GAAAAACCGATTTCACGTTT+TGG | - | chr8.1:73008199-73008218 | None:intergenic | 35.0% |
| !! | GAACGTTTGGATGTTGATTT+GGG | + | chr8.1:73008403-73008422 | MS.gene79923:CDS | 35.0% |
| !! | TGGATGTTGATTTGGGAAAT+GGG | + | chr8.1:73008410-73008429 | MS.gene79923:CDS | 35.0% |
| !! | TTGGATGTTGATTTGGGAAA+TGG | + | chr8.1:73008409-73008428 | MS.gene79923:CDS | 35.0% |
| !!! | AGCTGGAAAGCTTTCTTTTT+TGG | + | chr8.1:73010125-73010144 | MS.gene79923:intron | 35.0% |
| !!! | CCAAATTGCAGGTACTTTTT+TGG | + | chr8.1:73008710-73008729 | MS.gene79923:intron | 35.0% |
| !!! | TTTTTTGGTCAAAAGCTCTC+CGG | + | chr8.1:73010166-73010185 | MS.gene79923:intron | 35.0% |
| AGACTATTTCGTTGAGTCCT+AGG | + | chr8.1:73008581-73008600 | MS.gene79923:CDS | 40.0% | |
| ATCAATTGGATCGGGTTCTT+CGG | + | chr8.1:73008468-73008487 | MS.gene79923:CDS | 40.0% | |
| CAAACAAAGGCAACACTTCA+AGG | + | chr8.1:73009857-73009876 | MS.gene79923:intron | 40.0% | |
| CAGAGCGACTGACTAAATAT+TGG | - | chr8.1:73010846-73010865 | None:intergenic | 40.0% | |
| CCCCATCTTCGATAAGAATA+TGG | - | chr8.1:73009819-73009838 | None:intergenic | 40.0% | |
| CCCTAAAGAGTCATAGATCA+TGG | + | chr8.1:73008095-73008114 | MS.gene79923:CDS | 40.0% | |
| CTATTGACAACACTGACAGA+AGG | - | chr8.1:73010503-73010522 | None:intergenic | 40.0% | |
| GATAATGTGAGAATCACAGG+TGG | + | chr8.1:73008328-73008347 | MS.gene79923:CDS | 40.0% | |
| GCAACATAAACTTCAACCGA+TGG | - | chr8.1:73008526-73008545 | None:intergenic | 40.0% | |
| GCATCCAAAATAGCATGTCT+AGG | - | chr8.1:73008616-73008635 | None:intergenic | 40.0% | |
| GCCATGATCTATGACTCTTT+AGG | - | chr8.1:73008099-73008118 | None:intergenic | 40.0% | |
| TATGTTGCTGGATGTTGTTC+TGG | + | chr8.1:73008538-73008557 | MS.gene79923:CDS | 40.0% | |
| TCAAGAAATGTATCTTGGCG+AGG | + | chr8.1:73011168-73011187 | MS.gene79923:CDS | 40.0% | |
| TCCCAAATAACAGCTGTTTG+TGG | + | chr8.1:73010625-73010644 | MS.gene79923:intron | 40.0% | |
| TCGGTTGAAGTTTATGTTGC+TGG | + | chr8.1:73008526-73008545 | MS.gene79923:CDS | 40.0% | |
| TCTGAGCTATGTATGACACA+TGG | + | chr8.1:73009184-73009203 | MS.gene79923:intron | 40.0% | |
| TGAGTAATTTCACGGAGAAG+CGG | - | chr8.1:73010940-73010959 | None:intergenic | 40.0% | |
| TGGCTATAGTCGAATGTTCT+AGG | + | chr8.1:73008950-73008969 | MS.gene79923:intron | 40.0% | |
| TGTATGACACATGGAGAACT+AGG | + | chr8.1:73009193-73009212 | MS.gene79923:intron | 40.0% | |
| TGTCACCCAAAACGTGAAAT+CGG | + | chr8.1:73008190-73008209 | MS.gene79923:CDS | 40.0% | |
| TTGTCAATAGTGCGCTATAC+CGG | + | chr8.1:73010513-73010532 | MS.gene79923:intron | 40.0% | |
| TTTGATCAACTTCAGGTACG+TGG | - | chr8.1:73009124-73009143 | None:intergenic | 40.0% | |
| ! | GATTTGGTTTCAGCAGTTGT+AGG | + | chr8.1:73009553-73009572 | MS.gene79923:intron | 40.0% |
| ! | GCCACAAACAGCTGTTATTT+GGG | - | chr8.1:73010629-73010648 | None:intergenic | 40.0% |
| ! | GGAAATGCATATGATGGAGA+AGG | + | chr8.1:73008651-73008670 | MS.gene79923:CDS | 40.0% |
| ! | GGAACGTTTGGATGTTGATT+TGG | + | chr8.1:73008402-73008421 | MS.gene79923:CDS | 40.0% |
| ! | TTGGGATATGGATTGTCATG+TGG | + | chr8.1:73008438-73008457 | MS.gene79923:CDS | 40.0% |
| !! | AAGAGCACCACATAAACCAA+GGG | - | chr8.1:73010268-73010287 | None:intergenic | 40.0% |
| !! | AGGTAGTGAAAGTACTAGAC+CGG | - | chr8.1:73009516-73009535 | None:intergenic | 40.0% |
| !! | GTTGTTTCTATGTGGGTCAT+TGG | + | chr8.1:73008381-73008400 | MS.gene79923:CDS | 40.0% |
| !! | TAAGAGCACCACATAAACCA+AGG | - | chr8.1:73010269-73010288 | None:intergenic | 40.0% |
| !!! | GTCGCTTTTGATTGAAATGG+TGG | + | chr8.1:73008930-73008949 | MS.gene79923:intron | 40.0% |
| AAATGGGTCTGGTTGGGATA+TGG | + | chr8.1:73008426-73008445 | MS.gene79923:CDS | 45.0% | |
| AATTCCACACCCCAAATTGC+AGG | + | chr8.1:73008699-73008718 | MS.gene79923:CDS | 45.0% | |
| ACTCTTTATCGACACGGTCA+CGG | - | chr8.1:73008282-73008301 | None:intergenic | 45.0% | |
| AGAGAGTGATTAGAGAAGGG+AGG | - | chr8.1:73009892-73009911 | None:intergenic | 45.0% | |
| AGCTTTCCAGCTTCCAAAAC+AGG | - | chr8.1:73010117-73010136 | None:intergenic | 45.0% | |
| AGTGAGGTAGCAAATGCAAC+TGG | - | chr8.1:73010820-73010839 | None:intergenic | 45.0% | |
| AGTGATTAGAGAAGGGAGGT+AGG | - | chr8.1:73009888-73009907 | None:intergenic | 45.0% | |
| ATGTGGGTCATTGGAACGTT+TGG | + | chr8.1:73008390-73008409 | MS.gene79923:CDS | 45.0% | |
| ATTTGGGAAATGGGTCTGGT+TGG | + | chr8.1:73008419-73008438 | MS.gene79923:CDS | 45.0% | |
| CAGCAGACTCTTTATCGACA+CGG | - | chr8.1:73008288-73008307 | None:intergenic | 45.0% | |
| CCAGTTCAGCATACAACACT+CGG | - | chr8.1:73010365-73010384 | None:intergenic | 45.0% | |
| CTATTTCGTTGAGTCCTAGG+AGG | + | chr8.1:73008584-73008603 | MS.gene79923:CDS | 45.0% | |
| CTTGATGGAAAGATGGCGAA+TGG | + | chr8.1:73011136-73011155 | MS.gene79923:CDS | 45.0% | |
| GAAATGTATCTTGGCGAGGA+CGG | + | chr8.1:73011172-73011191 | MS.gene79923:CDS | 45.0% | |
| GAACTTTCTGATTCCGTTGC+TGG | + | chr8.1:73010078-73010097 | MS.gene79923:intron | 45.0% | |
| GCTTTCCAGCTTCCAAAACA+GGG | - | chr8.1:73010116-73010135 | None:intergenic | 45.0% | |
| GGCCACAAACAGCTGTTATT+TGG | - | chr8.1:73010630-73010649 | None:intergenic | 45.0% | |
| GTGTTGTATGCTGAACTGGT+TGG | + | chr8.1:73010366-73010385 | MS.gene79923:intron | 45.0% | |
| TGACACATGGAGAACTAGGA+TGG | + | chr8.1:73009197-73009216 | MS.gene79923:intron | 45.0% | |
| TGAGTGAGACAGAGTGAGAT+AGG | - | chr8.1:73010777-73010796 | None:intergenic | 45.0% | |
| TGTCGATAAAGAGTCTGCTG+AGG | + | chr8.1:73008288-73008307 | MS.gene79923:CDS | 45.0% | |
| TTTGGGAAATGGGTCTGGTT+GGG | + | chr8.1:73008420-73008439 | MS.gene79923:CDS | 45.0% | |
| ! | AGAGCACCACATAAACCAAG+GGG | - | chr8.1:73010267-73010286 | None:intergenic | 45.0% |
| ! | AGATCAGGGAAGTATGCTGA+TGG | + | chr8.1:73009379-73009398 | MS.gene79923:intron | 45.0% |
| ! | GGATATGGATTGTCATGTGG+CGG | + | chr8.1:73008441-73008460 | MS.gene79923:CDS | 45.0% |
| ! | TCTGCTCTGCTATTTGGGAT+CGG | + | chr8.1:73010867-73010886 | MS.gene79923:intron | 45.0% |
| ! | TCTGCTCTGCTCTGCTATTT+GGG | + | chr8.1:73010862-73010881 | MS.gene79923:intron | 45.0% |
| !! | GTTGATTTGGGAAATGGGTC+TGG | + | chr8.1:73008415-73008434 | MS.gene79923:CDS | 45.0% |
| !!! | ATGAACCCTGTTTTGGAAGC+TGG | + | chr8.1:73010108-73010127 | MS.gene79923:intron | 45.0% |
| !!! | CGGGTTCTTCGGCTTTTTTT+AGG | + | chr8.1:73008479-73008498 | MS.gene79923:CDS | 45.0% |
| !!! | GCTTTTTTTAGGCCGAAGCT+CGG | + | chr8.1:73008490-73008509 | MS.gene79923:CDS | 45.0% |
| ACACTACACCACTACAGCAC+CGG | - | chr8.1:73010535-73010554 | None:intergenic | 50.0% | |
| CATGTGGCGGTTGGATCAAT+TGG | + | chr8.1:73008454-73008473 | MS.gene79923:CDS | 50.0% | |
| CTCAGAAACGACACCCTGAA+AGG | + | chr8.1:73009244-73009263 | MS.gene79923:intron | 50.0% | |
| CTCTGCTCTGCTCTGCTATT+TGG | + | chr8.1:73010861-73010880 | MS.gene79923:intron | 50.0% | |
| GAGCACCACATAAACCAAGG+GGG | - | chr8.1:73010266-73010285 | None:intergenic | 50.0% | |
| GCGCTATTGCACCTATAGCA+CGG | + | chr8.1:73009096-73009115 | MS.gene79923:intron | 50.0% | |
| GCGGTTGGATCAATTGGATC+GGG | + | chr8.1:73008460-73008479 | MS.gene79923:CDS | 50.0% | |
| GGATGCTATTCCCGAAGATG+AGG | + | chr8.1:73008630-73008649 | MS.gene79923:CDS | 50.0% | |
| GGCGGTTGGATCAATTGGAT+CGG | + | chr8.1:73008459-73008478 | MS.gene79923:CDS | 50.0% | |
| GTGGTGTAGTGTAACAGAGC+AGG | + | chr8.1:73010543-73010562 | MS.gene79923:intron | 50.0% | |
| TCCAATCTCATCAGAAGGCG+TGG | - | chr8.1:73010662-73010681 | None:intergenic | 50.0% | |
| TGCATCCCCCTTGGTTTATG+TGG | + | chr8.1:73010258-73010277 | MS.gene79923:intron | 50.0% | |
| TGTCTAGGAACTCTCCTCCT+AGG | - | chr8.1:73008601-73008620 | None:intergenic | 50.0% | |
| ! | AGTACCTGCAATTTGGGGTG+TGG | - | chr8.1:73008706-73008725 | None:intergenic | 50.0% |
| ! | ATGGATTGTCATGTGGCGGT+TGG | + | chr8.1:73008445-73008464 | MS.gene79923:CDS | 50.0% |
| ! | CACAGGTGGTGCTGAATTTG+AGG | + | chr8.1:73008342-73008361 | MS.gene79923:CDS | 50.0% |
| ! | CCGAGTGTTGTATGCTGAAC+TGG | + | chr8.1:73010362-73010381 | MS.gene79923:intron | 50.0% |
| CTTTATCGACACGGTCACGG+CGG | - | chr8.1:73008279-73008298 | None:intergenic | 55.0% | |
| GCCACGCCTTCTGATGAGAT+TGG | + | chr8.1:73010658-73010677 | MS.gene79923:intron | 55.0% | |
| GGTACGTGGTACCGTGCTAT+AGG | - | chr8.1:73009110-73009129 | None:intergenic | 55.0% | |
| GGTCAAAAGCTCTCCGGAAG+TGG | + | chr8.1:73010172-73010191 | MS.gene79923:intron | 55.0% | |
| ! | CAGAAGGCGTGGCACTATAG+CGG | - | chr8.1:73010651-73010670 | None:intergenic | 55.0% |
| !! | TAGGCCGAAGCTCGGTGTTT+CGG | + | chr8.1:73008498-73008517 | MS.gene79923:CDS | 55.0% |
| GGAGCCGAAACACCGAGCTT+CGG | - | chr8.1:73008505-73008524 | None:intergenic | 60.0% | |
| !! | GCGCTATACCGGTGCTGTAG+TGG | + | chr8.1:73010524-73010543 | MS.gene79923:intron | 60.0% |
| !! | GCTCGGTGTTTCGGCTCCAT+CGG | + | chr8.1:73008507-73008526 | MS.gene79923:CDS | 60.0% |
| TGGGAGCTGTGCATCCCCCT+TGG | + | chr8.1:73010249-73010268 | MS.gene79923:intron | 65.0% | |
| ! | GCGGAAGAGGGTGCAGGGAT+CGG | - | chr8.1:73008241-73008260 | None:intergenic | 65.0% |
| GGAAGCGGTGGGGCGGAAGA+GGG | - | chr8.1:73008253-73008272 | None:intergenic | 70.0% | |
| TCGACACGGTCACGGCGGAG+CGG | - | chr8.1:73008274-73008293 | None:intergenic | 70.0% | |
| ! | GTGGGGCGGAAGAGGGTGCA+GGG | - | chr8.1:73008246-73008265 | None:intergenic | 70.0% |
| ACGGCGGAGCGGAAGCGGTG+GGG | - | chr8.1:73008263-73008282 | None:intergenic | 75.0% | |
| CACGGCGGAGCGGAAGCGGT+GGG | - | chr8.1:73008264-73008283 | None:intergenic | 75.0% | |
| CGGAAGCGGTGGGGCGGAAG+AGG | - | chr8.1:73008254-73008273 | None:intergenic | 75.0% | |
| CGGTCACGGCGGAGCGGAAG+CGG | - | chr8.1:73008268-73008287 | None:intergenic | 75.0% | |
| TCACGGCGGAGCGGAAGCGG+TGG | - | chr8.1:73008265-73008284 | None:intergenic | 75.0% | |
| ! | GGTGGGGCGGAAGAGGGTGC+AGG | - | chr8.1:73008247-73008266 | None:intergenic | 75.0% |
| ! | GCGGAGCGGAAGCGGTGGGG+CGG | - | chr8.1:73008260-73008279 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 73008040 | 73011206 | 73008040 | ID=MS.gene79923 |
| chr8.1 | mRNA | 73008040 | 73011206 | 73008040 | ID=MS.gene79923.t1;Parent=MS.gene79923 |
| chr8.1 | exon | 73008040 | 73008720 | 73008040 | ID=MS.gene79923.t1.exon1;Parent=MS.gene79923.t1 |
| chr8.1 | CDS | 73008040 | 73008720 | 73008040 | ID=cds.MS.gene79923.t1;Parent=MS.gene79923.t1 |
| chr8.1 | exon | 73011106 | 73011206 | 73011106 | ID=MS.gene79923.t1.exon2;Parent=MS.gene79923.t1 |
| chr8.1 | CDS | 73011106 | 73011206 | 73011106 | ID=cds.MS.gene79923.t1;Parent=MS.gene79923.t1 |
| Gene Sequence |
| Protein sequence |
