AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003861

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003861.t1 MTR_4g068000 97.158 915 23 1 1 915 1 912 0.0 1854
MS.gene003861.t1 MTR_2g099350 59.896 960 320 18 1 909 1 946 0.0 1071
MS.gene003861.t1 MTR_0022s0430 36.717 798 402 20 150 909 112 844 5.75e-138 433
MS.gene003861.t1 MTR_0022s0430 36.650 794 400 20 154 909 1 729 1.99e-137 428
MS.gene003861.t1 MTR_3g115400 39.744 546 286 12 149 663 138 671 1.89e-116 377
MS.gene003861.t1 MTR_1g100970 36.035 691 359 22 150 810 44 681 2.04e-113 369
MS.gene003861.t1 MTR_1g100970 44.444 81 44 1 830 909 806 886 3.28e-15 80.9
MS.gene003861.t1 MTR_1g100970 35.871 683 371 18 150 810 124 761 1.25e-112 369
MS.gene003861.t1 MTR_1g100970 44.444 81 44 1 830 909 886 966 3.56e-15 80.9
MS.gene003861.t1 MTR_1g100970 37.204 422 213 13 314 709 2 397 1.77e-70 247
MS.gene003861.t1 MTR_1g100970 44.444 81 44 1 830 909 598 678 2.04e-15 81.3
MS.gene003861.t1 MTR_5g099060 33.884 363 196 11 146 500 122 448 5.51e-46 179
MS.gene003861.t1 MTR_5g099060 67.778 90 25 1 576 665 607 692 3.21e-31 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.687 958 391 24 1 909 1 916 0.0 789
MS.gene003861.t1 AT2G43500 49.022 971 391 25 1 909 1 929 0.0 779
MS.gene003861.t1 AT2G43500 49.022 971 391 25 1 909 1 929 0.0 779
MS.gene003861.t1 AT2G43500 48.919 971 392 25 1 909 1 929 0.0 776
MS.gene003861.t1 AT3G59580 49.675 924 361 26 19 909 23 875 0.0 748
MS.gene003861.t1 AT3G59580 49.675 924 361 26 19 909 23 875 0.0 748
MS.gene003861.t1 AT3G59580 49.675 924 361 26 19 909 23 875 0.0 748
MS.gene003861.t1 AT1G64530 41.544 544 283 12 145 656 87 627 1.74e-119 384
MS.gene003861.t1 AT1G64530 53.125 64 29 1 830 892 744 807 1.91e-13 75.1
MS.gene003861.t1 AT1G20640 41.486 552 267 12 149 665 104 634 1.06e-118 382
MS.gene003861.t1 AT1G20640 41.486 552 267 12 149 665 104 634 1.06e-118 382
MS.gene003861.t1 AT1G20640 41.486 552 267 12 149 665 104 634 1.06e-118 382
MS.gene003861.t1 AT1G76350 41.887 530 266 12 148 652 104 616 2.16e-118 380
MS.gene003861.t1 AT1G76350 41.887 530 266 12 148 652 104 616 2.16e-118 380
MS.gene003861.t1 AT1G76350 41.887 530 266 12 148 652 104 616 2.16e-118 380
MS.gene003861.t1 AT1G76350 41.887 530 266 12 148 652 104 616 2.16e-118 380
MS.gene003861.t1 AT2G17150 32.692 832 431 21 143 904 117 889 1.36e-113 370
MS.gene003861.t1 AT2G17150 32.692 832 431 21 143 904 117 889 1.36e-113 370
MS.gene003861.t1 AT4G24020 39.685 572 299 14 115 656 107 662 4.72e-111 364
MS.gene003861.t1 AT4G24020 45.000 80 44 0 830 909 866 945 1.26e-16 85.5
MS.gene003861.t1 AT1G64530 42.702 459 229 12 222 656 24 472 1.48e-104 340
MS.gene003861.t1 AT1G64530 53.125 64 29 1 830 892 589 652 1.80e-13 75.1
MS.gene003861.t1 AT4G35270 35.452 598 292 19 143 663 146 726 1.64e-93 317
MS.gene003861.t1 AT4G35270 38.462 78 47 1 830 906 865 942 7.89e-11 66.6
MS.gene003861.t1 AT4G35270 35.452 598 292 19 143 663 146 726 1.64e-93 317
MS.gene003861.t1 AT4G35270 38.462 78 47 1 830 906 865 942 7.89e-11 66.6
MS.gene003861.t1 AT4G35270 35.452 598 292 19 143 663 146 726 1.64e-93 317
MS.gene003861.t1 AT4G35270 38.462 78 47 1 830 906 865 942 7.89e-11 66.6
MS.gene003861.t1 AT4G35270 35.452 598 292 19 143 663 146 726 1.64e-93 317
MS.gene003861.t1 AT4G35270 38.462 78 47 1 830 906 865 942 7.89e-11 66.6
MS.gene003861.t1 AT4G38340 36.207 522 261 14 145 656 39 498 7.35e-85 287
MS.gene003861.t1 AT4G38340 36.346 520 259 14 145 654 110 567 6.47e-84 286
MS.gene003861.t1 AT2G17150 33.712 528 273 13 143 607 117 630 6.14e-75 259
MS.gene003861.t1 AT2G17150 33.712 528 273 13 143 607 117 630 6.14e-75 259
MS.gene003861.t1 AT2G17150 30.896 670 340 17 301 904 22 634 6.97e-75 259
MS.gene003861.t1 AT2G17150 33.586 527 272 14 143 607 117 627 8.66e-74 256
MS.gene003861.t1 AT4G24020 40.102 394 202 9 284 656 2 382 3.44e-72 252
MS.gene003861.t1 AT4G24020 45.000 80 44 0 830 909 586 665 1.05e-16 85.5

Find 152 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGCTTTATCCTTCTTTA+AGG 0.159389 4.2:-38397458 MS.gene003861:CDS
TCTAATTCTTTGTCAAAATT+AGG 0.287200 4.2:+38397061 None:intergenic
CCCTCTCCTTTGAGGAATAT+TGG 0.288875 4.2:+38397914 None:intergenic
ATTTGTTTCTCATGCACTTC+AGG 0.297246 4.2:-38397038 MS.gene003861:intron
TGAATGCTGCCGTTGCAATT+AGG 0.297724 4.2:-38396415 MS.gene003861:CDS
AAAAGGTTTAAGTTACAAAA+TGG 0.299236 4.2:-38394125 MS.gene003861:CDS
TCTTGTTGTCCTGGACTTCC+TGG 0.301260 4.2:-38397271 MS.gene003861:CDS
TGGTGGAAATTACAATGTTA+TGG 0.302520 4.2:-38397662 MS.gene003861:CDS
TTGCTATATCAATGATAAAA+TGG 0.306339 4.2:-38396597 MS.gene003861:CDS
CATATTCTCTTCAGAGTTGT+TGG 0.308883 4.2:+38394869 None:intergenic
AATAGTAGTTTGCATGATAT+TGG 0.319094 4.2:-38394443 MS.gene003861:CDS
AATTTAGATTCACAACAAAA+TGG 0.321611 4.2:-38397547 MS.gene003861:CDS
TTTCTTCCGATCAATATGAT+AGG 0.325828 4.2:-38396347 MS.gene003861:CDS
CTTTCATCATTTGCATATGA+TGG 0.328114 4.2:-38397733 MS.gene003861:CDS
TAATTCATGTGAGGCGGAAT+TGG 0.328858 4.2:-38394600 MS.gene003861:CDS
AATTTAGCTGAACACATAAA+TGG 0.329071 4.2:-38397706 MS.gene003861:CDS
GGAGAATTTGTAAGAGTTTG+AGG 0.335074 4.2:-38396277 MS.gene003861:CDS
AAAAGTGATATTACAAGAAA+TGG 0.336269 4.2:-38397617 MS.gene003861:CDS
TTTCGCAGCGTGTGAATCTA+AGG 0.337305 4.2:-38396933 MS.gene003861:intron
GAGGAATACTAGCACAAGTT+TGG 0.342017 4.2:-38397423 MS.gene003861:CDS
TTCAATGACTGAACTTGGTT+TGG 0.342695 4.2:-38394405 MS.gene003861:CDS
TCTATGAAGAAGTTGCAAAA+AGG 0.346947 4.2:-38394142 MS.gene003861:CDS
CACACTGGTGGATTTGTTGC+CGG 0.353688 4.2:-38394722 MS.gene003861:CDS
AACATGTCATCTGAAGTTAA+TGG 0.354035 4.2:+38397847 None:intergenic
TAATCTATAGAGGTTTGTTT+AGG 0.354534 4.2:+38394503 None:intergenic
GGTTCAATCATCCAACAAAT+TGG 0.359787 4.2:-38394698 MS.gene003861:CDS
GAGGAAGGACAAGGTATATC+TGG 0.362717 4.2:-38396536 MS.gene003861:CDS
TTGTTAGATCAAAAGCTTGC+AGG 0.364988 4.2:-38397346 MS.gene003861:CDS
AGGTCATCACCATACTTTAT+AGG 0.370674 4.2:+38397397 None:intergenic
ATGGTTGATCACTTGTAGTT+AGG 0.371200 4.2:+38397371 None:intergenic
TATTATGCGTACCAATTTGT+TGG 0.379422 4.2:+38394687 None:intergenic
CCAACATTAGAGGTCCATTC+AGG 0.380914 4.2:+38397226 None:intergenic
AAGATTCAACAACATGGCTT+TGG 0.385657 4.2:-38394544 MS.gene003861:CDS
TTTCAAAAGGAAAATGTCTC+AGG 0.395471 4.2:-38396206 MS.gene003861:CDS
TCGTTTCGTTGAATGACATC+TGG 0.396728 4.2:+38396120 None:intergenic
GCTGAACTAAGAGGGATAGA+AGG 0.402797 4.2:-38396242 MS.gene003861:CDS
ACATCTTCTTCCTCCAACTT+AGG 0.403825 4.2:+38394632 None:intergenic
TTTCATTAGAACTTGTCATA+TGG 0.407153 4.2:+38396648 None:intergenic
TCAGAGTTCATATCAGATAT+AGG 0.407580 4.2:+38397130 None:intergenic
ATGATAGTAGCCAACATTAG+AGG 0.411624 4.2:+38397216 None:intergenic
TTGTTGGATGATTGAACCTC+CGG 0.420526 4.2:+38394703 None:intergenic
TTCAAGAACATAATCTATAG+AGG 0.425745 4.2:+38394493 None:intergenic
GTTTGGGCACCTATAAAGTA+TGG 0.426412 4.2:-38397406 MS.gene003861:CDS
ATGAACTTTGATAGCTATGC+TGG 0.431040 4.2:-38397805 MS.gene003861:CDS
GATTCTGTCCAAGGAGTTGA+AGG 0.441649 4.2:-38394764 MS.gene003861:CDS
TCAGAACTCCTTCAACTCCT+TGG 0.443312 4.2:+38394756 None:intergenic
GACTACCAGAAAAGTATTGT+TGG 0.443666 4.2:+38395475 None:intergenic
ATCGAATGCCTCTGGCTCAA+TGG 0.458272 4.2:-38394324 MS.gene003861:CDS
TAAACGACCTCGACACTTCG+CGG 0.462374 4.2:+38397320 None:intergenic
CTTTGGACACCATTTGATAG+TGG 0.468888 4.2:-38397880 MS.gene003861:CDS
TTAACTCGCATGTTCCTGAA+TGG 0.472060 4.2:-38397240 MS.gene003861:CDS
AGGAATACTAGCACAAGTTT+GGG 0.473111 4.2:-38397422 MS.gene003861:CDS
GCCTCTGGCTCAATGGTGAA+TGG 0.475824 4.2:-38394317 MS.gene003861:CDS
ACCGATTCATCGAATGCCTC+TGG 0.477307 4.2:-38394332 MS.gene003861:CDS
TTCTCAATATGAGTTTCAAA+AGG 0.490680 4.2:-38396219 MS.gene003861:CDS
ATGGTGAATGGAAGTTCATC+GGG 0.491313 4.2:-38394305 MS.gene003861:CDS
GTGAAGAATCTGAGCGAATA+CGG 0.491594 4.2:-38396682 MS.gene003861:CDS
GCCAGAGGCATTCGATGAAT+CGG 0.493281 4.2:+38394331 None:intergenic
AGCTATGCTGGTTGGTGCAA+TGG 0.494942 4.2:-38397793 MS.gene003861:CDS
TTCTTCCGATCAATATGATA+GGG 0.494971 4.2:-38396346 MS.gene003861:CDS
GTTTCAGAAGCTGAACTAAG+AGG 0.495063 4.2:-38396251 MS.gene003861:CDS
GAAAACCTCAGTACCTAAGT+TGG 0.500516 4.2:-38394645 MS.gene003861:CDS
TCCTTCTTTAAGGAATCAGC+TGG 0.500538 4.2:-38397448 MS.gene003861:CDS
ACAATTTGTCAGATACTATG+AGG 0.500861 4.2:-38396298 MS.gene003861:CDS
AAAATGGGATCTTGTTGTCC+TGG 0.501858 4.2:-38397280 MS.gene003861:CDS
TCGGTCATGCTTGAAGAAGT+AGG 0.504724 4.2:+38394350 None:intergenic
GACTGAACTTGGTTTGGAAG+AGG 0.505501 4.2:-38394399 MS.gene003861:CDS
GTCGATAGTGAATCGAAATT+CGG 0.506033 4.2:-38394233 MS.gene003861:CDS
CATCATCAAGATACTTGAGT+TGG 0.506954 4.2:+38394096 None:intergenic
AGCGTTTAGTAGCGGTGACC+AGG 0.506987 4.2:-38396150 MS.gene003861:CDS
ACCAATATTCCTCAAAGGAG+AGG 0.507368 4.2:-38397915 MS.gene003861:CDS
ACCAGCTGATTCCTTAAAGA+AGG 0.508019 4.2:+38397447 None:intergenic
AACAAGTGGTTCAAGAAAGC+AGG 0.511373 4.2:-38395547 MS.gene003861:CDS
ACTGAACTTGGTTTGGAAGA+GGG 0.513095 4.2:-38394398 MS.gene003861:CDS
CTTGGTTTGGAAGAGGGAAA+AGG 0.513271 4.2:-38394392 MS.gene003861:CDS
GCCTCCACGACTTCTTCCTC+AGG 0.514345 4.2:-38396902 MS.gene003861:intron
GGTGAATGACTCGGATTTGA+AGG 0.516959 4.2:-38394054 MS.gene003861:CDS
TGCGAGTTAAACACGCGACC+AGG 0.519436 4.2:+38397253 None:intergenic
AATGGTGAATGGAAGTTCAT+CGG 0.520981 4.2:-38394306 MS.gene003861:CDS
CAAGTATCTTGATGATGAAG+AGG 0.525082 4.2:-38394090 MS.gene003861:CDS
TTCACATCGGTATAGAAGAA+TGG 0.526209 4.2:+38396491 None:intergenic
AACACGCGACCAGGAAGTCC+AGG 0.529959 4.2:+38397262 None:intergenic
GCGATTAGTCACGAGGTTCG+TGG 0.530512 4.2:-38397166 MS.gene003861:CDS
TTTAAGGAATCAGCTGGTGG+AGG 0.534319 4.2:-38397442 MS.gene003861:CDS
ATGACATCTGGAATAAATCC+TGG 0.537640 4.2:+38396132 None:intergenic
CGGTCATGCTTGAAGAAGTA+GGG 0.539130 4.2:+38394351 None:intergenic
AACCTCAGTACCTAAGTTGG+AGG 0.540723 4.2:-38394642 MS.gene003861:CDS
TCTTGATGATGAAGAGGAAT+GGG 0.541215 4.2:-38394084 MS.gene003861:CDS
TGAAGAGGAATGGGTGATGT+TGG 0.542821 4.2:-38394075 MS.gene003861:CDS
AGAACAAGATCAATGTGGGT+TGG 0.543970 4.2:-38394468 MS.gene003861:CDS
TGTTGTTATAGTGAAGGAAA+AGG 0.544964 4.2:-38396704 MS.gene003861:CDS
GATCACTTGTAGTTAGGATG+AGG 0.549158 4.2:+38397377 None:intergenic
TTCCTCCAACTTAGGTACTG+AGG 0.552637 4.2:+38394640 None:intergenic
AAATCAAGCTGCTTACAGTC+AGG 0.553977 4.2:-38396081 MS.gene003861:intron
TTCTTTAAGGAATCAGCTGG+TGG 0.555577 4.2:-38397445 MS.gene003861:CDS
AAATTTGACCCTCACACTGG+TGG 0.556063 4.2:-38394734 MS.gene003861:CDS
TTCAAGTTTGATCCATCTGT+AGG 0.556153 4.2:-38394176 MS.gene003861:CDS
CTGCCGTTGCAATTAGGCTA+AGG 0.556511 4.2:-38396409 MS.gene003861:CDS
TGAGAGTTGCCCCTAGACAT+AGG 0.562581 4.2:+38396176 None:intergenic
CTGAAATTTGACCCTCACAC+TGG 0.562922 4.2:-38394737 MS.gene003861:CDS
CCAATATTCCTCAAAGGAGA+GGG 0.565226 4.2:-38397914 MS.gene003861:CDS
ATCAATGATAAAATGGTAGG+AGG 0.568083 4.2:-38396590 MS.gene003861:CDS
ATGGCTTTGGACAAAGACTC+AGG 0.569057 4.2:-38394531 MS.gene003861:CDS
ATTCCATGTTGTTATAGTGA+AGG 0.571178 4.2:-38396710 MS.gene003861:CDS
ATCTTGATGATGAAGAGGAA+TGG 0.571443 4.2:-38394085 MS.gene003861:CDS
TATATCAATGATAAAATGGT+AGG 0.571576 4.2:-38396593 MS.gene003861:CDS
GGAATCCATGTCAGTGCTAG+AGG 0.576033 4.2:+38396728 None:intergenic
TCCATTCACCATTGAGCCAG+AGG 0.576842 4.2:+38394316 None:intergenic
GTTTACCTCTAGCACTGACA+TGG 0.580401 4.2:-38396733 MS.gene003861:CDS
TTGCTCGTTCGCAATATACA+TGG 0.581173 4.2:-38393987 MS.gene003861:CDS
CACTATCAAATGGTGTCCAA+AGG 0.587917 4.2:+38397881 None:intergenic
ACCGTGCTTGATTCTGTCCA+AGG 0.587988 4.2:-38394773 MS.gene003861:CDS
CAGGTTACCGCGAAGTGTCG+AGG 0.588688 4.2:-38397327 MS.gene003861:CDS
TTTCAGAAGCTGAACTAAGA+GGG 0.591675 4.2:-38396250 MS.gene003861:CDS
GAGCGAATACGGATTAAAGA+AGG 0.592513 4.2:-38396671 MS.gene003861:CDS
ATTCTTCTATACCGATGTGA+AGG 0.593072 4.2:-38396489 MS.gene003861:CDS
AGTTGAAAACAACCTACAGA+TGG 0.595183 4.2:+38394164 None:intergenic
TGATATCAAAGTCACCTAGT+TGG 0.595187 4.2:-38397501 MS.gene003861:CDS
CCTGAATGGACCTCTAATGT+TGG 0.597938 4.2:-38397226 MS.gene003861:CDS
AAGAGAATATGCAGACAACA+TGG 0.598011 4.2:-38394857 MS.gene003861:CDS
GAACTCCCTATCATATTGAT+CGG 0.598238 4.2:+38396341 None:intergenic
TCTTGTTTCTAATTCATGTG+AGG 0.598404 4.2:-38394609 MS.gene003861:CDS
TGTTTCTAATTCATGTGAGG+CGG 0.601828 4.2:-38394606 MS.gene003861:CDS
ACTTTATTTATCTTGCGCGA+TGG 0.602825 4.2:+38394821 None:intergenic
CTCTCATCAAGTGACCAACT+AGG 0.606095 4.2:+38397487 None:intergenic
GACAACATGGAATTTCAAGA+TGG 0.607708 4.2:-38394844 MS.gene003861:CDS
ATATTCCTCAAAGGAGAGGG+GGG 0.613156 4.2:-38397911 MS.gene003861:CDS
GGTGTCAAAGCTAACTATAG+AGG 0.613947 4.2:-38394212 MS.gene003861:CDS
TCTGAACATCATCTTGAGGA+AGG 0.620522 4.2:-38396551 MS.gene003861:CDS
GCAACAAATCCACCAGTGTG+AGG 0.621558 4.2:+38394725 None:intergenic
GGAAGACCAATATTCCTCAA+AGG 0.622366 4.2:-38397920 MS.gene003861:CDS
CATCATCTTGAGGAAGGACA+AGG 0.623347 4.2:-38396545 MS.gene003861:CDS
CAACAAATCCACCAGTGTGA+GGG 0.634860 4.2:+38394726 None:intergenic
TTTCGCGCGTGATGAACAAG+CGG 0.638493 4.2:+38396446 None:intergenic
AATACCTGAGGAAGAAGTCG+TGG 0.639662 4.2:+38396898 None:intergenic
ACTTTGATAGCTATGCTGGT+TGG 0.641227 4.2:-38397801 MS.gene003861:CDS
ACTGGTGGATTTGTTGCCGG+AGG 0.643544 4.2:-38394719 MS.gene003861:CDS
TTTCCTTCACTATAACAACA+TGG 0.644491 4.2:+38396707 None:intergenic
TATTCCTCAAAGGAGAGGGG+GGG 0.646481 4.2:-38397910 MS.gene003861:CDS
CAATATTCCTCAAAGGAGAG+GGG 0.647996 4.2:-38397913 MS.gene003861:CDS
ATGTTCTGAACATCATCTTG+AGG 0.650977 4.2:-38396555 MS.gene003861:CDS
ACTCCTTAGCCTAATTGCAA+CGG 0.651625 4.2:+38396406 None:intergenic
ACTTGAACTTGTCACTACAA+AGG 0.651739 4.2:-38397089 MS.gene003861:CDS
AATATTCCTCAAAGGAGAGG+GGG 0.653283 4.2:-38397912 MS.gene003861:CDS
TCCTTGGACAGAATCAAGCA+CGG 0.660179 4.2:+38394772 None:intergenic
AGATCATGCGATTAGTCACG+AGG 0.673342 4.2:-38397173 MS.gene003861:CDS
ACCTGAGGAAGAAGTCGTGG+AGG 0.684396 4.2:+38396901 None:intergenic
GGTGATGTTGGTGAATGACT+CGG 0.694918 4.2:-38394063 MS.gene003861:CDS
GTATTGAAGATTCAACAACA+TGG 0.706035 4.2:-38394550 MS.gene003861:CDS
CTCGTTCGCAATATACATGG+CGG 0.709197 4.2:-38393984 MS.gene003861:CDS
TCTCAGATAGCGTTTAGTAG+CGG 0.712734 4.2:-38396158 MS.gene003861:CDS
AACATCATAAGCCTTCACAT+CGG 0.714348 4.2:+38396478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAGTTAATAATAAATATAA+AGG + chr4.2:38396501-38396520 None:intergenic 10.0%
!! AAATTACTACAAATGTTAAA+AGG + chr4.2:38396315-38396334 None:intergenic 15.0%
!! ATTTCACATTAAATTCTAAA+AGG + chr4.2:38395869-38395888 None:intergenic 15.0%
!!! TTGCTATTTTTAATGTATTT+TGG - chr4.2:38396280-38396299 MS.gene003861:CDS 15.0%
!!! TTTGTAGTAATTTTTCTTAT+AGG - chr4.2:38396322-38396341 MS.gene003861:CDS 15.0%
!! AAAAGTGATATTACAAGAAA+TGG - chr4.2:38394276-38394295 MS.gene003861:CDS 20.0%
!! AATTTAGATTCACAACAAAA+TGG - chr4.2:38394346-38394365 MS.gene003861:CDS 20.0%
!! ACATTAAAAATAGCAACAAA+AGG + chr4.2:38396276-38396295 None:intergenic 20.0%
!! CAAAGTTAAAAGATAAATCA+AGG + chr4.2:38396247-38396266 None:intergenic 20.0%
!! GAAAATAGAAAAGTAGTATA+TGG + chr4.2:38394905-38394924 None:intergenic 20.0%
!! TAGTGAAAATGTATATAAGT+TGG + chr4.2:38396827-38396846 None:intergenic 20.0%
!! TATATCAATGATAAAATGGT+AGG - chr4.2:38395300-38395319 MS.gene003861:intron 20.0%
!! TCTAATTCTTTGTCAAAATT+AGG + chr4.2:38394835-38394854 None:intergenic 20.0%
!! TGCATGTCAAAAAATTAAAT+TGG - chr4.2:38396869-38396888 MS.gene003861:intron 20.0%
!! TTGCTATATCAATGATAAAA+TGG - chr4.2:38395296-38395315 MS.gene003861:intron 20.0%
!! TTTATATGTTTACTTAGAGT+AGG + chr4.2:38396633-38396652 None:intergenic 20.0%
!!! AAAAGGTTTAAGTTACAAAA+TGG - chr4.2:38397768-38397787 MS.gene003861:CDS 20.0%
!!! ATTAACTCAGCTTTTAATTT+TGG - chr4.2:38396512-38396531 MS.gene003861:CDS 20.0%
!!! TTAACTCAGCTTTTAATTTT+GGG - chr4.2:38396513-38396532 MS.gene003861:CDS 20.0%
! AAAAAGAACAAGATCAATGT+GGG - chr4.2:38397421-38397440 MS.gene003861:CDS 25.0%
! AAAGATGCTGCAAAAAAAAT+TGG - chr4.2:38396443-38396462 MS.gene003861:CDS 25.0%
! AACTGATATATCAGAAATTC+AGG + chr4.2:38395029-38395048 None:intergenic 25.0%
! AAGATGCTGCAAAAAAAATT+GGG - chr4.2:38396444-38396463 MS.gene003861:CDS 25.0%
! AATAGAAAAGTAGTATATGG+TGG + chr4.2:38394902-38394921 None:intergenic 25.0%
! AATTTAGCTGAACACATAAA+TGG - chr4.2:38394187-38394206 MS.gene003861:CDS 25.0%
! ATAGCAAATTAAGTGTGATA+TGG + chr4.2:38396198-38396217 None:intergenic 25.0%
! CCAATTTCTGTCATAAAAAA+TGG + chr4.2:38394214-38394233 None:intergenic 25.0%
! CGATATTTGATTACAAAGTT+TGG - chr4.2:38396011-38396030 MS.gene003861:intron 25.0%
! GAAACATATGCTTCTTAAAA+TGG + chr4.2:38395899-38395918 None:intergenic 25.0%
! TACACACTGCATAAAAAAAA+AGG + chr4.2:38395073-38395092 None:intergenic 25.0%
! TTCAAGAACATAATCTATAG+AGG + chr4.2:38397403-38397422 None:intergenic 25.0%
! TTCTCAATATGAGTTTCAAA+AGG - chr4.2:38395674-38395693 MS.gene003861:intron 25.0%
! TTTCATTAGAACTTGTCATA+TGG + chr4.2:38395248-38395267 None:intergenic 25.0%
!! AATAGTAGTTTGCATGATAT+TGG - chr4.2:38397450-38397469 MS.gene003861:CDS 25.0%
!! AGCTTTTGATCTAACAAATA+TGG + chr4.2:38394544-38394563 None:intergenic 25.0%
!! CTGTTATCACTGAAATTTTA+GGG - chr4.2:38396077-38396096 MS.gene003861:intron 25.0%
!! GAAATTTTCACAAATAGTGA+TGG + chr4.2:38396479-38396498 None:intergenic 25.0%
!! GTTTATCTGAAATTCTTAAG+AGG - chr4.2:38395046-38395065 MS.gene003861:intron 25.0%
!! TAATCTATAGAGGTTTGTTT+AGG + chr4.2:38397393-38397412 None:intergenic 25.0%
!! TACAAATGTTAAAAGGCATA+TGG + chr4.2:38396308-38396327 None:intergenic 25.0%
!! TCTGTTATCACTGAAATTTT+AGG - chr4.2:38396076-38396095 MS.gene003861:intron 25.0%
!! TTTTCTGCAGAAATGAAAAT+GGG - chr4.2:38394598-38394617 MS.gene003861:CDS 25.0%
!!! ATCACACTTAATTTGCTATA+GGG - chr4.2:38396199-38396218 MS.gene003861:CDS 25.0%
!!! CCATTTTTTATGACAGAAAT+TGG - chr4.2:38394211-38394230 MS.gene003861:CDS 25.0%
!!! CTTGATTTCCACTATTTTTT+AGG + chr4.2:38395800-38395819 None:intergenic 25.0%
!!! TATCACACTTAATTTGCTAT+AGG - chr4.2:38396198-38396217 MS.gene003861:CDS 25.0%
!!! TCTGATTAAGTTTTTTCGTA+TGG + chr4.2:38395984-38396003 None:intergenic 25.0%
!!! TTTTTTATGACAGAAATTGG+TGG - chr4.2:38394214-38394233 MS.gene003861:CDS 25.0%
AAGACACAAACGATTGATAA+CGG - chr4.2:38396660-38396679 MS.gene003861:CDS 30.0%
ACAATTTGTCAGATACTATG+AGG - chr4.2:38395595-38395614 MS.gene003861:intron 30.0%
ACTAAGTTCATTAACATCCT+TGG - chr4.2:38396843-38396862 MS.gene003861:intron 30.0%
AGATGCTGCAAAAAAAATTG+GGG - chr4.2:38396445-38396464 MS.gene003861:CDS 30.0%
ATCAATGATAAAATGGTAGG+AGG - chr4.2:38395303-38395322 MS.gene003861:intron 30.0%
ATTCCATGTTGTTATAGTGA+AGG - chr4.2:38395183-38395202 MS.gene003861:intron 30.0%
CTTTCATCATTTGCATATGA+TGG - chr4.2:38394160-38394179 MS.gene003861:CDS 30.0%
GAAAAAGAACAAGATCAATG+TGG - chr4.2:38397420-38397439 MS.gene003861:CDS 30.0%
GAAACGAACCTAAAAAATAG+TGG - chr4.2:38395789-38395808 MS.gene003861:intron 30.0%
GTATTGAAGATTCAACAACA+TGG - chr4.2:38397343-38397362 MS.gene003861:CDS 30.0%
TAACCAACAGAATGAAATCT+GGG - chr4.2:38396161-38396180 MS.gene003861:CDS 30.0%
TATTATGCGTACCAATTTGT+TGG + chr4.2:38397209-38397228 None:intergenic 30.0%
TCAGAGTTCATATCAGATAT+AGG + chr4.2:38394766-38394785 None:intergenic 30.0%
TCTATGAAGAAGTTGCAAAA+AGG - chr4.2:38397751-38397770 MS.gene003861:CDS 30.0%
TGCAACTCTTAAACTTATGA+TGG + chr4.2:38396586-38396605 None:intergenic 30.0%
TGGTGGAAATTACAATGTTA+TGG - chr4.2:38394231-38394250 MS.gene003861:CDS 30.0%
TGTTGTTATAGTGAAGGAAA+AGG - chr4.2:38395189-38395208 MS.gene003861:intron 30.0%
TTCTTCCGATCAATATGATA+GGG - chr4.2:38395547-38395566 MS.gene003861:CDS 30.0%
TTTCAAAAGGAAAATGTCTC+AGG - chr4.2:38395687-38395706 MS.gene003861:intron 30.0%
TTTCCTTCACTATAACAACA+TGG + chr4.2:38395189-38395208 None:intergenic 30.0%
TTTCTTCCGATCAATATGAT+AGG - chr4.2:38395546-38395565 MS.gene003861:CDS 30.0%
! AACATGTCATCTGAAGTTAA+TGG + chr4.2:38394049-38394068 None:intergenic 30.0%
! CTTTTCATTCCACTATCAAA+TGG + chr4.2:38394025-38394044 None:intergenic 30.0%
! GTTTTCTGCAGAAATGAAAA+TGG - chr4.2:38394597-38394616 MS.gene003861:CDS 30.0%
! TTTTTCTTATAGGCAACAAG+TGG - chr4.2:38396332-38396351 MS.gene003861:CDS 30.0%
!! TCACACTTAATTTGCTATAG+GGG - chr4.2:38396200-38396219 MS.gene003861:CDS 30.0%
!! TCTTGTTTCTAATTCATGTG+AGG - chr4.2:38397284-38397303 MS.gene003861:CDS 30.0%
!! TTTCAAGTTATTGCGTATCA+TGG - chr4.2:38395915-38395934 MS.gene003861:intron 30.0%
!!! AAATTTTAGGGTATACAGGA+TGG - chr4.2:38396089-38396108 MS.gene003861:CDS 30.0%
!!! ACTGAAATTTTAGGGTATAC+AGG - chr4.2:38396085-38396104 MS.gene003861:CDS 30.0%
!!! AGGTTTTTTTCCTATGTCTA+GGG - chr4.2:38395707-38395726 MS.gene003861:intron 30.0%
!!! ATGGTTTACTTTTTTGAACC+AGG + chr4.2:38395965-38395984 None:intergenic 30.0%
!!! CACTTTTTCATCATAACTAG+TGG + chr4.2:38394263-38394282 None:intergenic 30.0%
!!! CTTTTAATTTTGGGTTGACT+TGG - chr4.2:38396522-38396541 MS.gene003861:CDS 30.0%
!!! GTAGAAGTTTTGAGTGATAT+TGG - chr4.2:38397867-38397886 MS.gene003861:CDS 30.0%
!!! TCTTTTTCAATGACTGAACT+TGG - chr4.2:38397483-38397502 MS.gene003861:CDS 30.0%
!!! TGGTTTACTTTTTTGAACCA+GGG + chr4.2:38395964-38395983 None:intergenic 30.0%
AACATCATAAGCCTTCACAT+CGG + chr4.2:38395418-38395437 None:intergenic 35.0%
AACCAACAGAATGAAATCTG+GGG - chr4.2:38396162-38396181 MS.gene003861:CDS 35.0%
AAGAGAATATGCAGACAACA+TGG - chr4.2:38397036-38397055 MS.gene003861:intron 35.0%
AAGATTCAACAACATGGCTT+TGG - chr4.2:38397349-38397368 MS.gene003861:CDS 35.0%
AATGGTGAATGGAAGTTCAT+CGG - chr4.2:38397587-38397606 MS.gene003861:CDS 35.0%
ACAAGAATGAACTCCATGAA+AGG + chr4.2:38396946-38396965 None:intergenic 35.0%
ACTTGAACTTGTCACTACAA+AGG - chr4.2:38394804-38394823 MS.gene003861:CDS 35.0%
AGATTGACATTACCCTTTCA+TGG - chr4.2:38396930-38396949 MS.gene003861:intron 35.0%
AGGAATACTAGCACAAGTTT+GGG - chr4.2:38394471-38394490 MS.gene003861:CDS 35.0%
AGGTCATCACCATACTTTAT+AGG + chr4.2:38394499-38394518 None:intergenic 35.0%
AGTTGAAAACAACCTACAGA+TGG + chr4.2:38397732-38397751 None:intergenic 35.0%
ATGATAGTAGCCAACATTAG+AGG + chr4.2:38394680-38394699 None:intergenic 35.0%
ATGGTTGATCACTTGTAGTT+AGG + chr4.2:38394525-38394544 None:intergenic 35.0%
ATTCTTCTATACCGATGTGA+AGG - chr4.2:38395404-38395423 MS.gene003861:intron 35.0%
CAAGAATGAACTCCATGAAA+GGG + chr4.2:38396945-38396964 None:intergenic 35.0%
CATATTCTCTTCAGAGTTGT+TGG + chr4.2:38397027-38397046 None:intergenic 35.0%
CATCATCAAGATACTTGAGT+TGG + chr4.2:38397800-38397819 None:intergenic 35.0%
GAACTCCCTATCATATTGAT+CGG + chr4.2:38395555-38395574 None:intergenic 35.0%
GACAACATGGAATTTCAAGA+TGG - chr4.2:38397049-38397068 MS.gene003861:CDS 35.0%
GAGTGCTTTATCCTTCTTTA+AGG - chr4.2:38394435-38394454 MS.gene003861:CDS 35.0%
GATGCTGCAAAAAAAATTGG+GGG - chr4.2:38396446-38396465 MS.gene003861:CDS 35.0%
GCTCTTATTCACTGATAAGT+GGG + chr4.2:38396760-38396779 None:intergenic 35.0%
GGAGAATTTGTAAGAGTTTG+AGG - chr4.2:38395616-38395635 MS.gene003861:intron 35.0%
GGTTCAATCATCCAACAAAT+TGG - chr4.2:38397195-38397214 MS.gene003861:CDS 35.0%
GTAACCAACAGAATGAAATC+TGG - chr4.2:38396160-38396179 MS.gene003861:CDS 35.0%
GTCGATAGTGAATCGAAATT+CGG - chr4.2:38397660-38397679 MS.gene003861:CDS 35.0%
TGATATCAAAGTCACCTAGT+TGG - chr4.2:38394392-38394411 MS.gene003861:CDS 35.0%
TTCAATGACTGAACTTGGTT+TGG - chr4.2:38397488-38397507 MS.gene003861:CDS 35.0%
TTCACATCGGTATAGAAGAA+TGG + chr4.2:38395405-38395424 None:intergenic 35.0%
TTGTTAGATCAAAAGCTTGC+AGG - chr4.2:38394547-38394566 MS.gene003861:CDS 35.0%
TTTCAGAAGCTGAACTAAGA+GGG - chr4.2:38395643-38395662 MS.gene003861:intron 35.0%
! AATTAAGAGTGGACTCATTG+AGG - chr4.2:38396546-38396565 MS.gene003861:CDS 35.0%
! ACTTTATTTATCTTGCGCGA+TGG + chr4.2:38397075-38397094 None:intergenic 35.0%
! ATGAACTTTGATAGCTATGC+TGG - chr4.2:38394088-38394107 MS.gene003861:CDS 35.0%
! ATGACATCTGGAATAAATCC+TGG + chr4.2:38395764-38395783 None:intergenic 35.0%
! ATGTTCTGAACATCATCTTG+AGG - chr4.2:38395338-38395357 MS.gene003861:intron 35.0%
! ATTAAGAGTGGACTCATTGA+GGG - chr4.2:38396547-38396566 MS.gene003861:CDS 35.0%
! ATTTGTTTCTCATGCACTTC+AGG - chr4.2:38394855-38394874 MS.gene003861:CDS 35.0%
! GTTCTCCAACAATACTTTTC+TGG - chr4.2:38396413-38396432 MS.gene003861:CDS 35.0%
! TGTTTCTAATTCATGTGAGG+CGG - chr4.2:38397287-38397306 MS.gene003861:CDS 35.0%
! TTCAAGTTTGATCCATCTGT+AGG - chr4.2:38397717-38397736 MS.gene003861:CDS 35.0%
!! ATCTTGATGATGAAGAGGAA+TGG - chr4.2:38397808-38397827 MS.gene003861:CDS 35.0%
!! CAAGTATCTTGATGATGAAG+AGG - chr4.2:38397803-38397822 MS.gene003861:CDS 35.0%
!! GACTACCAGAAAAGTATTGT+TGG + chr4.2:38396421-38396440 None:intergenic 35.0%
!! GTTGACTTGGAAATTAAGAG+TGG - chr4.2:38396535-38396554 MS.gene003861:CDS 35.0%
!! TCTTGATGATGAAGAGGAAT+GGG - chr4.2:38397809-38397828 MS.gene003861:CDS 35.0%
!!! CAGGTTTTTTTCCTATGTCT+AGG - chr4.2:38395706-38395725 MS.gene003861:intron 35.0%
!!! GGTTTTTTTCCTATGTCTAG+GGG - chr4.2:38395708-38395727 MS.gene003861:intron 35.0%
!!! TTTTTTGACATGCACAACCA+AGG + chr4.2:38396863-38396882 None:intergenic 35.0%
AAATCAAGCTGCTTACAGTC+AGG - chr4.2:38395812-38395831 MS.gene003861:intron 40.0%
AACAAGTGGTTCAAGAAAGC+AGG - chr4.2:38396346-38396365 MS.gene003861:CDS 40.0%
AATATTCCTCAAAGGAGAGG+GGG - chr4.2:38393981-38394000 MS.gene003861:CDS 40.0%
ACATCTTCTTCCTCCAACTT+AGG + chr4.2:38397264-38397283 None:intergenic 40.0%
ACCAACAGAATGAAATCTGG+GGG - chr4.2:38396163-38396182 MS.gene003861:CDS 40.0%
ACCAATATTCCTCAAAGGAG+AGG - chr4.2:38393978-38393997 MS.gene003861:CDS 40.0%
ACTCCTTAGCCTAATTGCAA+CGG + chr4.2:38395490-38395509 None:intergenic 40.0%
AGAACAAGATCAATGTGGGT+TGG - chr4.2:38397425-38397444 MS.gene003861:CDS 40.0%
ATCCGAAGAGTCTTACCATT+TGG - chr4.2:38396792-38396811 MS.gene003861:CDS 40.0%
ATGGTGAATGGAAGTTCATC+GGG - chr4.2:38397588-38397607 MS.gene003861:CDS 40.0%
CAACTCCTGGTTTACTGATA+AGG + chr4.2:38396133-38396152 None:intergenic 40.0%
CAATATTCCTCAAAGGAGAG+GGG - chr4.2:38393980-38393999 MS.gene003861:CDS 40.0%
CACTATCAAATGGTGTCCAA+AGG + chr4.2:38394015-38394034 None:intergenic 40.0%
CCAATATTCCTCAAAGGAGA+GGG - chr4.2:38393979-38393998 MS.gene003861:CDS 40.0%
CTCTTCGGATATGTTGAGTA+TGG + chr4.2:38396782-38396801 None:intergenic 40.0%
CTTTGGACACCATTTGATAG+TGG - chr4.2:38394013-38394032 MS.gene003861:CDS 40.0%
GAAAACCTCAGTACCTAAGT+TGG - chr4.2:38397248-38397267 MS.gene003861:CDS 40.0%
GAGGAATACTAGCACAAGTT+TGG - chr4.2:38394470-38394489 MS.gene003861:CDS 40.0%
GATCACTTGTAGTTAGGATG+AGG + chr4.2:38394519-38394538 None:intergenic 40.0%
GGAAGACCAATATTCCTCAA+AGG - chr4.2:38393973-38393992 MS.gene003861:CDS 40.0%
GGCTCTTATTCACTGATAAG+TGG + chr4.2:38396761-38396780 None:intergenic 40.0%
GGTGTCAAAGCTAACTATAG+AGG - chr4.2:38397681-38397700 MS.gene003861:CDS 40.0%
GGTTACATACTTACAACTCC+TGG + chr4.2:38396146-38396165 None:intergenic 40.0%
GTCCAAATGGTAAGACTCTT+CGG + chr4.2:38396797-38396816 None:intergenic 40.0%
GTGAAGAATCTGAGCGAATA+CGG - chr4.2:38395211-38395230 MS.gene003861:intron 40.0%
GTTTCAGAAGCTGAACTAAG+AGG - chr4.2:38395642-38395661 MS.gene003861:intron 40.0%
GTTTGGGCACCTATAAAGTA+TGG - chr4.2:38394487-38394506 MS.gene003861:CDS 40.0%
TAATTCATGTGAGGCGGAAT+TGG - chr4.2:38397293-38397312 MS.gene003861:CDS 40.0%
TCGTTTCGTTGAATGACATC+TGG + chr4.2:38395776-38395795 None:intergenic 40.0%
TCTCAGATAGCGTTTAGTAG+CGG - chr4.2:38395735-38395754 MS.gene003861:intron 40.0%
TCTGAACATCATCTTGAGGA+AGG - chr4.2:38395342-38395361 MS.gene003861:intron 40.0%
TGCTTCCTTATCAGTAAACC+AGG - chr4.2:38396125-38396144 MS.gene003861:CDS 40.0%
TGGTTTACTGATAAGGAAGC+AGG + chr4.2:38396126-38396145 None:intergenic 40.0%
TTAACTCGCATGTTCCTGAA+TGG - chr4.2:38394653-38394672 MS.gene003861:CDS 40.0%
TTGCTCGTTCGCAATATACA+TGG - chr4.2:38397906-38397925 MS.gene003861:CDS 40.0%
TTGTTGGATGATTGAACCTC+CGG + chr4.2:38397193-38397212 None:intergenic 40.0%
! AAAATGGGATCTTGTTGTCC+TGG - chr4.2:38394613-38394632 MS.gene003861:CDS 40.0%
! ACCAGCTGATTCCTTAAAGA+AGG + chr4.2:38394449-38394468 None:intergenic 40.0%
! ACTTTGATAGCTATGCTGGT+TGG - chr4.2:38394092-38394111 MS.gene003861:CDS 40.0%
! AGTTGGTGTATGAGTCCAAA+TGG + chr4.2:38396810-38396829 None:intergenic 40.0%
! GAGCGAATACGGATTAAAGA+AGG - chr4.2:38395222-38395241 MS.gene003861:intron 40.0%
! TCCTTCTTTAAGGAATCAGC+TGG - chr4.2:38394445-38394464 MS.gene003861:CDS 40.0%
! TTCTTTAAGGAATCAGCTGG+TGG - chr4.2:38394448-38394467 MS.gene003861:CDS 40.0%
!! ACTGAACTTGGTTTGGAAGA+GGG - chr4.2:38397495-38397514 MS.gene003861:CDS 40.0%
!! CTTAATTTGCTATAGGGGAG+TGG - chr4.2:38396205-38396224 MS.gene003861:CDS 40.0%
!!! TAGGTACTGAGGTTTTCTCA+GGG + chr4.2:38397245-38397264 None:intergenic 40.0%
!!! TTAGGTACTGAGGTTTTCTC+AGG + chr4.2:38397246-38397265 None:intergenic 40.0%
AAATTTGACCCTCACACTGG+TGG - chr4.2:38397159-38397178 MS.gene003861:CDS 45.0%
AACAGAATGAAATCTGGGGG+GGG - chr4.2:38396166-38396185 MS.gene003861:CDS 45.0%
AATACCTGAGGAAGAAGTCG+TGG + chr4.2:38394998-38395017 None:intergenic 45.0%
AGAACTCTGAACATCAACCC+TGG - chr4.2:38395944-38395963 MS.gene003861:intron 45.0%
ATATTCCTCAAAGGAGAGGG+GGG - chr4.2:38393982-38394001 MS.gene003861:CDS 45.0%
CAACAAATCCACCAGTGTGA+GGG + chr4.2:38397170-38397189 None:intergenic 45.0%
CAACAGAATGAAATCTGGGG+GGG - chr4.2:38396165-38396184 MS.gene003861:CDS 45.0%
CACTGATAAGTGGGCAGATA+CGG + chr4.2:38396751-38396770 None:intergenic 45.0%
CAGGAATCTGCAAATACCTG+AGG + chr4.2:38395010-38395029 None:intergenic 45.0%
CATCATCTTGAGGAAGGACA+AGG - chr4.2:38395348-38395367 MS.gene003861:intron 45.0%
CCAACAGAATGAAATCTGGG+GGG - chr4.2:38396164-38396183 MS.gene003861:CDS 45.0%
CCAACATTAGAGGTCCATTC+AGG + chr4.2:38394670-38394689 None:intergenic 45.0%
CCTGAATGGACCTCTAATGT+TGG - chr4.2:38394667-38394686 MS.gene003861:CDS 45.0%
CGGTCATGCTTGAAGAAGTA+GGG + chr4.2:38397545-38397564 None:intergenic 45.0%
CTCGTTCGCAATATACATGG+CGG - chr4.2:38397909-38397928 MS.gene003861:CDS 45.0%
CTCTCATCAAGTGACCAACT+AGG + chr4.2:38394409-38394428 None:intergenic 45.0%
CTGAAATTTGACCCTCACAC+TGG - chr4.2:38397156-38397175 MS.gene003861:CDS 45.0%
GAAAGCAGGCTGAGAAAAAG+AGG - chr4.2:38396360-38396379 MS.gene003861:CDS 45.0%
GAGGAAGGACAAGGTATATC+TGG - chr4.2:38395357-38395376 MS.gene003861:intron 45.0%
GATTCTGTCCAAGGAGTTGA+AGG - chr4.2:38397129-38397148 MS.gene003861:CDS 45.0%
GCTGAACTAAGAGGGATAGA+AGG - chr4.2:38395651-38395670 MS.gene003861:intron 45.0%
GTTTCTCATGCACTTCAGGT+TGG - chr4.2:38394859-38394878 MS.gene003861:CDS 45.0%
TCAGAACTCCTTCAACTCCT+TGG + chr4.2:38397140-38397159 None:intergenic 45.0%
TCCTTGGACAGAATCAAGCA+CGG + chr4.2:38397124-38397143 None:intergenic 45.0%
TCGGTCATGCTTGAAGAAGT+AGG + chr4.2:38397546-38397565 None:intergenic 45.0%
TGAAGAGGAATGGGTGATGT+TGG - chr4.2:38397818-38397837 MS.gene003861:CDS 45.0%
TGAATGCTGCCGTTGCAATT+AGG - chr4.2:38395478-38395497 MS.gene003861:CDS 45.0%
TTTAAGGAATCAGCTGGTGG+AGG - chr4.2:38394451-38394470 MS.gene003861:CDS 45.0%
TTTCGCAGCGTGTGAATCTA+AGG - chr4.2:38394960-38394979 MS.gene003861:intron 45.0%
! AACCTCAGTACCTAAGTTGG+AGG - chr4.2:38397251-38397270 MS.gene003861:CDS 45.0%
! AGATCATGCGATTAGTCACG+AGG - chr4.2:38394720-38394739 MS.gene003861:CDS 45.0%
! CCCTCTCCTTTGAGGAATAT+TGG + chr4.2:38393982-38394001 None:intergenic 45.0%
! GGTGAATGACTCGGATTTGA+AGG - chr4.2:38397839-38397858 MS.gene003861:CDS 45.0%
! GGTGATGTTGGTGAATGACT+CGG - chr4.2:38397830-38397849 MS.gene003861:CDS 45.0%
! TTCCTCCAACTTAGGTACTG+AGG + chr4.2:38397256-38397275 None:intergenic 45.0%
!! ATGGCTTTGGACAAAGACTC+AGG - chr4.2:38397362-38397381 MS.gene003861:CDS 45.0%
!! CTTGGTTTGGAAGAGGGAAA+AGG - chr4.2:38397501-38397520 MS.gene003861:CDS 45.0%
!! GACTGAACTTGGTTTGGAAG+AGG - chr4.2:38397494-38397513 MS.gene003861:CDS 45.0%
!! GTTTACCTCTAGCACTGACA+TGG - chr4.2:38395160-38395179 MS.gene003861:intron 45.0%
!! TGAGAAAAAGAGGAGTGCTG+TGG - chr4.2:38396370-38396389 MS.gene003861:CDS 45.0%
ACAGAATGAAATCTGGGGGG+GGG - chr4.2:38396167-38396186 MS.gene003861:CDS 50.0%
ACCGTGCTTGATTCTGTCCA+AGG - chr4.2:38397120-38397139 MS.gene003861:CDS 50.0%
CAGTCGAGGCGTGGAATAAT+TGG + chr4.2:38396037-38396056 None:intergenic 50.0%
CCCCCCAGATTTCATTCTGT+TGG + chr4.2:38396167-38396186 None:intergenic 50.0%
CTGCCGTTGCAATTAGGCTA+AGG - chr4.2:38395484-38395503 MS.gene003861:CDS 50.0%
GCAACAAATCCACCAGTGTG+AGG + chr4.2:38397171-38397190 None:intergenic 50.0%
GCCAATTGTGCTTACGTCTC+TGG - chr4.2:38396689-38396708 MS.gene003861:CDS 50.0%
GCCAGAGACGTAAGCACAAT+TGG + chr4.2:38396693-38396712 None:intergenic 50.0%
GGAATCCATGTCAGTGCTAG+AGG + chr4.2:38395168-38395187 None:intergenic 50.0%
TAAACGACCTCGACACTTCG+CGG + chr4.2:38394576-38394595 None:intergenic 50.0%
TATTCCTCAAAGGAGAGGGG+GGG - chr4.2:38393983-38394002 MS.gene003861:CDS 50.0%
TCCATTCACCATTGAGCCAG+AGG + chr4.2:38397580-38397599 None:intergenic 50.0%
TGAGAGTTGCCCCTAGACAT+AGG + chr4.2:38395720-38395739 None:intergenic 50.0%
TTTCGCGCGTGATGAACAAG+CGG + chr4.2:38395450-38395469 None:intergenic 50.0%
! ACCGATTCATCGAATGCCTC+TGG - chr4.2:38397561-38397580 MS.gene003861:CDS 50.0%
! AGCTATGCTGGTTGGTGCAA+TGG - chr4.2:38394100-38394119 MS.gene003861:CDS 50.0%
! ATCGAATGCCTCTGGCTCAA+TGG - chr4.2:38397569-38397588 MS.gene003861:CDS 50.0%
! TCTTGTTGTCCTGGACTTCC+TGG - chr4.2:38394622-38394641 MS.gene003861:CDS 50.0%
! TGGACTCATTGAGGGTGTGA+GGG - chr4.2:38396555-38396574 MS.gene003861:CDS 50.0%
!! CACACTGGTGGATTTGTTGC+CGG - chr4.2:38397171-38397190 MS.gene003861:CDS 50.0%
!! GCCAGAGGCATTCGATGAAT+CGG + chr4.2:38397565-38397584 None:intergenic 50.0%
ACCTGAGGAAGAAGTCGTGG+AGG + chr4.2:38394995-38395014 None:intergenic 55.0%
AGCGTTTAGTAGCGGTGACC+AGG - chr4.2:38395743-38395762 MS.gene003861:intron 55.0%
GCTATAGGGGAGTGGAACAG+TGG - chr4.2:38396213-38396232 MS.gene003861:CDS 55.0%
TGCGAGTTAAACACGCGACC+AGG + chr4.2:38394643-38394662 None:intergenic 55.0%
! AGTGGAGCTGAAAGCGCAAC+AGG + chr4.2:38396724-38396743 None:intergenic 55.0%
! CTCATTGAGGGTGTGAGGGT+TGG - chr4.2:38396559-38396578 MS.gene003861:CDS 55.0%
! GCCTCTGGCTCAATGGTGAA+TGG - chr4.2:38397576-38397595 MS.gene003861:CDS 55.0%
! GCGATTAGTCACGAGGTTCG+TGG - chr4.2:38394727-38394746 MS.gene003861:CDS 55.0%
! GTGGACTCATTGAGGGTGTG+AGG - chr4.2:38396554-38396573 MS.gene003861:CDS 55.0%
!! ACTGGTGGATTTGTTGCCGG+AGG - chr4.2:38397174-38397193 MS.gene003861:CDS 55.0%
AACACGCGACCAGGAAGTCC+AGG + chr4.2:38394634-38394653 None:intergenic 60.0%
ACTGCAGCGCTCTACAGTCG+AGG + chr4.2:38396051-38396070 None:intergenic 60.0%
AGAGGGGGGGAATCAGCCTT+TGG - chr4.2:38393996-38394015 MS.gene003861:CDS 60.0%
GATTCCCCCCCTCTCCTTTG+AGG + chr4.2:38393990-38394009 None:intergenic 60.0%
GCCTCCACGACTTCTTCCTC+AGG - chr4.2:38394991-38395010 MS.gene003861:intron 60.0%
!! CAGGTTACCGCGAAGTGTCG+AGG - chr4.2:38394566-38394585 MS.gene003861:CDS 60.0%
AGCGCTCTACAGTCGAGGCG+TGG + chr4.2:38396046-38396065 None:intergenic 65.0%
GTGGGCAGATACGGAGCGAG+TGG + chr4.2:38396742-38396761 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 38393971 38397944 38393971 ID=MS.gene003861
chr4.2 mRNA 38393971 38397944 38393971 ID=MS.gene003861.t1;Parent=MS.gene003861
chr4.2 exon 38397039 38397944 38397039 ID=MS.gene003861.t1.exon1;Parent=MS.gene003861.t1
chr4.2 CDS 38397039 38397944 38397039 ID=cds.MS.gene003861.t1;Parent=MS.gene003861.t1
chr4.2 exon 38396903 38396947 38396903 ID=MS.gene003861.t1.exon2;Parent=MS.gene003861.t1
chr4.2 CDS 38396903 38396947 38396903 ID=cds.MS.gene003861.t1;Parent=MS.gene003861.t1
chr4.2 exon 38396082 38396828 38396082 ID=MS.gene003861.t1.exon3;Parent=MS.gene003861.t1
chr4.2 CDS 38396082 38396828 38396082 ID=cds.MS.gene003861.t1;Parent=MS.gene003861.t1
chr4.2 exon 38395448 38395571 38395448 ID=MS.gene003861.t1.exon4;Parent=MS.gene003861.t1
chr4.2 CDS 38395448 38395571 38395448 ID=cds.MS.gene003861.t1;Parent=MS.gene003861.t1
chr4.2 exon 38393971 38394896 38393971 ID=MS.gene003861.t1.exon5;Parent=MS.gene003861.t1
chr4.2 CDS 38393971 38394896 38393971 ID=cds.MS.gene003861.t1;Parent=MS.gene003861.t1
Gene Sequence

>MS.gene003861

ATGGAAGACCAATATTCCTCAAAGGAGAGGGGGGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTCCATTAACTTCAGATGACATGTTTAACAACATCTCTGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATGATGGATTGAATTTAGCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGTTATGGATACTTCCACTAGTTATGATGAAAAAGTGATATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATAATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATGATATCAAAGTCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACCTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTGTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTCCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGCTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCGATTAGTCACGAGGTTCGTGGATCGATTGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGGTTGGTTTTTCTTTTGCTACTTCCACCATATACTACTTTTCTATTTTCAAATTGTGTTATAATTAAATGCATTTTTCGTGACTTTTCGCAGCGTGTGAATCTAAGGACTATTATGCCTCCACGACTTCTTCCTCAGGTATTTGCAGATTCCTGAATTTCTGATATATCAGTTTATCTGAAATTCTTAAGAGGTCCTTTTTTTTTATGCAGTGTGTATCAAATAACAAAAGAGCTGCGTTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTTTACCTCTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGGATTAAAGAAGGCCATATGACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCACTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACGAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCAGAACAACAACTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATAGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTAGGGGCAACTCTCAGATAGCGTTTAGTAGCGGTGACCAGGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGTATATTTTGAATGAATCTTCTATATTTTCATCCTTTTAGAATTTAATGTGAAATGAATGCTCCATTTTAAGAAGCATATGTTTCAAGTTATTGCGTATCATGGAATGTTAGAACTCTGAACATCAACCCTGGTTCAAAAAAGTAAACCATACGAAAAAACTTAATCAGAAAACACACGATATTTGATTACAAAGTTTGGCCAATTATTCCACGCCTCGACTGTAGAGCGCTGCAGTATCTTTCTGTTATCACTGAAATTTTAGGGTATACAGGATGGAAGCTGAGTCACCTGCTTCCTTATCAGTAAACCAGGAGTTGTAAGTATGTAACCAACAGAATGAAATCTGGGGGGGGGATGCTCCATATCACACTTAATTTGCTATAGGGGAGTGGAACAGTGGAACAAACACCTTGATTTATCTTTTAACTTTGTAACTTCCTTTTGTTGCTATTTTTAATGTATTTTGGAACCATATGCCTTTTAACATTTGTAGTAATTTTTCTTATAGGCAACAAGTGGTTCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCTGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAAAATTGGGGGTGAGACACCATCACTATTTGTGAAAATTTCCTTTATATTTATTATTAACTCAGCTTTTAATTTTGGGTTGACTTGGAAATTAAGAGTGGACTCATTGAGGGTGTGAGGGTTGGTCCATCATAAGTTTAAGAGTTGCAATTTTGTCTGTTAGAACAGCAAATCCTACTCTAAGTAAACATATAAAATCACACAAGACACAAACGATTGATAACGGAGTTCAGCCAATTGTGCTTACGTCTCTGGCGAAAAGTGCCTGTTGCGCTTTCAGCTCCACTCGCTCCGTATCTGCCCACTTATCAGTGAATAAGAGCCATACTCAACATATCCGAAGAGTCTTACCATTTGGACTCATACACCAACTTATATACATTTTCACTAAGTTCATTAACATCCTTGGTTGTGCATGTCAAAAAATTAAATTGGCAACGTCTACTACAGCTATGTTCTTTGATATTTTCTTAAGATTGACATTACCCTTTCATGGAGTTCATTCTTGTCAATAAAGACAAATATGTTTTTAATTTTTAACAAACATTCGTTCTTTAAACAGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCCGGAGGTTCAATCATCCAACAAATTGGTACGCATAATAAAACTCTCATGTTCCCTGAGAAAACCTCAGTACCTAAGTTGGAGGAAGAAGATGTTCTTGTTTCTAATTCATGTGAGGCGGAATTGGAGAAAGACAATGCTATTTCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCTCTATAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGTAGTTTGCATGATATTGGCTCTCATAGTTCTTTTTCAATGACTGAACTTGGTTTGGAAGAGGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCGAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCGGGATCTCAAAGCATTGAGAATCAGAAGCACTCAAAAATCAAATCAATTTGTGTCGATAGTGAATCGAAATTCGGTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTTGATCCATCTGTAGGTTGTTTTCAACTCTATGAAGAAGTTGCAAAAAGGTTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGAAGGAATGTGTAGAAGTTTTGAGTGATATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA
Protein sequence

>MS.gene003861.t1

MEDQYSSKERGGISLWTPFDSGMKSPLTSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYDGLNLAEHINGPFFMTEIGGNYNVMDTSTSYDEKVILQEMETQLEFLDNNSNETNNNLDSQQNGSYDMCNYMISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDLILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCPGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSNNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHMTSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGIEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDQDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGTHNKTLMFPEKTSVPKLEEEDVLVSNSCEAELEKDNAISVDCIEDSTTWLWTKTQDCPKQTSIDYVLEKEQDQCGLDNSSLHDIGSHSSFSMTELGLEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKIKSICVDSESKFGVKANYRGDTIRFKFDPSVGCFQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS