Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28321.t1 | XP_024636796.1 | 96.7 | 915 | 27 | 1 | 1 | 915 | 1 | 912 | 0.00E+00 | 1716 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28321.t1 | O22864 | 47.8 | 970 | 404 | 25 | 1 | 909 | 1 | 929 | 9.9e-209 | 728.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28321.t1 | G7JDS3 | 96.7 | 915 | 27 | 1 | 1 | 915 | 1 | 912 | 0.0e+00 | 1716.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene28321.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056401 | MS.gene28321 | 0.875737 | 2.43E-68 | -1.69E-46 |
| MS.gene056603 | MS.gene28321 | 0.929699 | 4.77E-93 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056401 | MS.gene28321 | PPI |
| MS.gene85257 | MS.gene28321 | PPI |
| MS.gene056973 | MS.gene28321 | PPI |
| MS.gene003861 | MS.gene28321 | PPI |
| MS.gene051987 | MS.gene28321 | PPI |
| MS.gene032204 | MS.gene28321 | PPI |
| MS.gene28321 | MS.gene032204 | PPI |
| MS.gene056603 | MS.gene28321 | PPI |
| MS.gene28321 | MS.gene85257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28321.t1 | MTR_4g068000 | 96.612 | 915 | 28 | 1 | 1 | 915 | 1 | 912 | 0.0 | 1843 |
| MS.gene28321.t1 | MTR_2g099350 | 59.479 | 960 | 324 | 18 | 1 | 909 | 1 | 946 | 0.0 | 1067 |
| MS.gene28321.t1 | MTR_0022s0430 | 36.717 | 798 | 402 | 20 | 150 | 909 | 112 | 844 | 1.10e-137 | 432 |
| MS.gene28321.t1 | MTR_0022s0430 | 36.650 | 794 | 400 | 20 | 154 | 909 | 1 | 729 | 4.14e-137 | 427 |
| MS.gene28321.t1 | MTR_3g115400 | 39.744 | 546 | 286 | 12 | 149 | 663 | 138 | 671 | 1.89e-116 | 377 |
| MS.gene28321.t1 | MTR_1g100970 | 40.672 | 536 | 276 | 14 | 150 | 657 | 44 | 565 | 6.88e-113 | 368 |
| MS.gene28321.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 830 | 909 | 806 | 886 | 3.17e-15 | 80.9 |
| MS.gene28321.t1 | MTR_1g100970 | 40.530 | 528 | 288 | 10 | 150 | 657 | 124 | 645 | 4.18e-112 | 368 |
| MS.gene28321.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 830 | 909 | 886 | 966 | 3.59e-15 | 80.9 |
| MS.gene28321.t1 | MTR_1g100970 | 40.217 | 368 | 184 | 10 | 314 | 657 | 2 | 357 | 3.72e-70 | 246 |
| MS.gene28321.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 830 | 909 | 598 | 678 | 2.06e-15 | 81.3 |
| MS.gene28321.t1 | MTR_5g099060 | 33.609 | 363 | 197 | 11 | 146 | 500 | 122 | 448 | 1.12e-45 | 178 |
| MS.gene28321.t1 | MTR_5g099060 | 67.778 | 90 | 25 | 1 | 576 | 665 | 607 | 692 | 3.92e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.792 | 960 | 387 | 24 | 1 | 909 | 1 | 916 | 0.0 | 789 |
| MS.gene28321.t1 | AT2G43500 | 49.126 | 973 | 387 | 25 | 1 | 909 | 1 | 929 | 0.0 | 781 |
| MS.gene28321.t1 | AT2G43500 | 49.126 | 973 | 387 | 25 | 1 | 909 | 1 | 929 | 0.0 | 781 |
| MS.gene28321.t1 | AT2G43500 | 49.024 | 973 | 388 | 25 | 1 | 909 | 1 | 929 | 0.0 | 778 |
| MS.gene28321.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| MS.gene28321.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| MS.gene28321.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 19 | 909 | 23 | 875 | 0.0 | 748 |
| MS.gene28321.t1 | AT1G64530 | 41.544 | 544 | 283 | 12 | 145 | 656 | 87 | 627 | 2.46e-119 | 384 |
| MS.gene28321.t1 | AT1G64530 | 45.679 | 81 | 42 | 2 | 830 | 909 | 744 | 823 | 1.74e-13 | 75.1 |
| MS.gene28321.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 2.72e-118 | 381 |
| MS.gene28321.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 2.72e-118 | 381 |
| MS.gene28321.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 149 | 665 | 104 | 634 | 2.72e-118 | 381 |
| MS.gene28321.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 4.63e-118 | 379 |
| MS.gene28321.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 4.63e-118 | 379 |
| MS.gene28321.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 4.63e-118 | 379 |
| MS.gene28321.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 148 | 652 | 104 | 616 | 4.63e-118 | 379 |
| MS.gene28321.t1 | AT4G24020 | 39.685 | 572 | 299 | 14 | 115 | 656 | 107 | 662 | 1.56e-111 | 366 |
| MS.gene28321.t1 | AT4G24020 | 45.000 | 80 | 44 | 0 | 830 | 909 | 866 | 945 | 1.39e-16 | 85.5 |
| MS.gene28321.t1 | AT1G64530 | 42.702 | 459 | 229 | 12 | 222 | 656 | 24 | 472 | 1.59e-104 | 340 |
| MS.gene28321.t1 | AT1G64530 | 53.125 | 64 | 29 | 1 | 830 | 892 | 589 | 652 | 1.68e-13 | 75.1 |
| MS.gene28321.t1 | AT2G17150 | 37.329 | 584 | 289 | 14 | 143 | 663 | 117 | 686 | 2.91e-103 | 342 |
| MS.gene28321.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 830 | 904 | 814 | 889 | 7.20e-12 | 70.1 |
| MS.gene28321.t1 | AT2G17150 | 37.329 | 584 | 289 | 14 | 143 | 663 | 117 | 686 | 2.91e-103 | 342 |
| MS.gene28321.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 830 | 904 | 814 | 889 | 7.20e-12 | 70.1 |
| MS.gene28321.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.00e-93 | 317 |
| MS.gene28321.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 8.09e-11 | 66.6 |
| MS.gene28321.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.00e-93 | 317 |
| MS.gene28321.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 8.09e-11 | 66.6 |
| MS.gene28321.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.00e-93 | 317 |
| MS.gene28321.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 8.09e-11 | 66.6 |
| MS.gene28321.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 143 | 663 | 146 | 726 | 2.00e-93 | 317 |
| MS.gene28321.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 830 | 906 | 865 | 942 | 8.09e-11 | 66.6 |
| MS.gene28321.t1 | AT4G38340 | 36.207 | 522 | 261 | 14 | 145 | 656 | 39 | 498 | 2.04e-84 | 286 |
| MS.gene28321.t1 | AT4G38340 | 36.346 | 520 | 259 | 14 | 145 | 654 | 110 | 567 | 8.33e-84 | 286 |
| MS.gene28321.t1 | AT2G17150 | 33.712 | 528 | 273 | 13 | 143 | 607 | 117 | 630 | 8.55e-75 | 258 |
| MS.gene28321.t1 | AT2G17150 | 33.712 | 528 | 273 | 13 | 143 | 607 | 117 | 630 | 8.55e-75 | 258 |
| MS.gene28321.t1 | AT2G17150 | 33.586 | 527 | 272 | 14 | 143 | 607 | 117 | 627 | 1.26e-73 | 255 |
| MS.gene28321.t1 | AT4G24020 | 40.102 | 394 | 202 | 9 | 284 | 656 | 2 | 382 | 2.79e-72 | 252 |
| MS.gene28321.t1 | AT4G24020 | 45.000 | 80 | 44 | 0 | 830 | 909 | 586 | 665 | 1.02e-16 | 85.5 |
| MS.gene28321.t1 | AT2G17150 | 36.256 | 422 | 198 | 10 | 301 | 663 | 22 | 431 | 1.09e-64 | 230 |
| MS.gene28321.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 830 | 904 | 559 | 634 | 4.85e-12 | 70.5 |
Find 150 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 4.4:-39059816 | MS.gene28321:CDS |
| TCTAATTCTTTGTCAAAATT+AGG | 0.287200 | 4.4:+39059419 | None:intergenic |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.288875 | 4.4:+39060272 | None:intergenic |
| ATTTGTTTCTCATGCACTTC+AGG | 0.297246 | 4.4:-39059396 | MS.gene28321:intron |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 4.4:-39058477 | MS.gene28321:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 4.4:-39056208 | MS.gene28321:CDS |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 4.4:-39059629 | MS.gene28321:CDS |
| ATGTCATCACCATACTTTAT+AGG | 0.302917 | 4.4:+39059755 | None:intergenic |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 4.4:-39056805 | MS.gene28321:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 4.4:-39058659 | MS.gene28321:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 4.4:+39056952 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 4.4:-39059905 | MS.gene28321:CDS |
| CTTCCATCATTTGCATATGA+TGG | 0.324818 | 4.4:-39060091 | MS.gene28321:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 4.4:-39058409 | MS.gene28321:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 4.4:-39060064 | MS.gene28321:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 4.4:-39058339 | MS.gene28321:CDS |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 4.4:-39059781 | MS.gene28321:CDS |
| AAATGTGCTATTACAAGAAA+TGG | 0.345785 | 4.4:-39059975 | MS.gene28321:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 4.4:-39056488 | MS.gene28321:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 4.4:-39056683 | MS.gene28321:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 4.4:+39056586 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 4.4:+39060205 | None:intergenic |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 4.4:-39058598 | MS.gene28321:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 4.4:-39059704 | MS.gene28321:CDS |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 4.4:+39059729 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 4.4:-39056781 | MS.gene28321:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 4.4:+39056770 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 4.4:-39056627 | MS.gene28321:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 4.4:-39056481 | MS.gene28321:CDS |
| TTACGCAGCGTGTGAATCTA+AGG | 0.393081 | 4.4:-39058997 | MS.gene28321:intron |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 4.4:-39058268 | MS.gene28321:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 4.4:+39058182 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 4.4:-39058304 | MS.gene28321:CDS |
| CCAACATTAGAGGTCCATTC+AGG | 0.403875 | 4.4:+39059584 | None:intergenic |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 4.4:+39058710 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 4.4:+39059488 | None:intergenic |
| ATGATAGTAACCAACATTAG+AGG | 0.414995 | 4.4:+39059574 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 4.4:-39059764 | MS.gene28321:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 4.4:-39060163 | MS.gene28321:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 4.4:-39056388 | MS.gene28321:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 4.4:-39056847 | MS.gene28321:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 4.4:+39056839 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 4.4:+39057535 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 4.4:-39056517 | MS.gene28321:CDS |
| ATTACCTGTGGAAGAAGTCT+TGG | 0.454612 | 4.4:+39058962 | None:intergenic |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 4.4:-39056407 | MS.gene28321:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 4.4:+39059678 | None:intergenic |
| AATCCATCATATGCAAATGA+TGG | 0.465994 | 4.4:+39060088 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 4.4:+39056715 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 4.4:-39060238 | MS.gene28321:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.470506 | 4.4:-39056316 | MS.gene28321:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 4.4:-39059598 | MS.gene28321:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 4.4:-39059780 | MS.gene28321:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 4.4:+39056643 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 4.4:-39056400 | MS.gene28321:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 4.4:-39056415 | MS.gene28321:CDS |
| TGGTGGAAATTACAATGGTA+TGG | 0.477511 | 4.4:-39060020 | MS.gene28321:CDS |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 4.4:-39056526 | MS.gene28321:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 4.4:-39058281 | MS.gene28321:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 4.4:+39056414 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 4.4:-39060151 | MS.gene28321:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 4.4:-39058408 | MS.gene28321:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 4.4:-39058313 | MS.gene28321:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 4.4:-39056728 | MS.gene28321:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 4.4:-39059806 | MS.gene28321:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 4.4:-39058360 | MS.gene28321:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 4.4:-39059638 | MS.gene28321:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 4.4:+39056433 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 4.4:+39056179 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 4.4:-39058212 | MS.gene28321:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 4.4:-39060273 | MS.gene28321:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 4.4:+39059805 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 4.4:-39057607 | MS.gene28321:CDS |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 4.4:+39059611 | None:intergenic |
| ACCTGTGGAAGAAGTCTTGG+AGG | 0.520926 | 4.4:+39058965 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 4.4:-39059859 | MS.gene28321:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 4.4:-39056173 | MS.gene28321:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 4.4:+39058553 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 4.4:-39056137 | MS.gene28321:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 4.4:+39059620 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 4.4:-39059800 | MS.gene28321:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 4.4:+39058194 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 4.4:+39056434 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 4.4:-39056167 | MS.gene28321:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 4.4:-39056158 | MS.gene28321:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 4.4:-39056551 | MS.gene28321:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 4.4:-39058766 | MS.gene28321:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 4.4:-39056475 | MS.gene28321:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 4.4:-39056725 | MS.gene28321:CDS |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 4.4:-39058143 | MS.gene28321:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 4.4:-39059803 | MS.gene28321:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 4.4:-39056817 | MS.gene28321:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 4.4:-39058471 | MS.gene28321:CDS |
| GCGATTAGTCACGAGGTTCG+AGG | 0.560165 | 4.4:-39059524 | MS.gene28321:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 4.4:+39058238 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 4.4:-39056820 | MS.gene28321:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.565226 | 4.4:-39060272 | MS.gene28321:CDS |
| GCCTCCAAGACTTCTTCCAC+AGG | 0.567011 | 4.4:-39058966 | MS.gene28321:intron |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 4.4:+39056648 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 4.4:-39058652 | MS.gene28321:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 4.4:-39056614 | MS.gene28321:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.570990 | 4.4:-39058733 | MS.gene28321:CDS |
| ATTCCATGTTGTTATAGTGA+AGG | 0.571178 | 4.4:-39058772 | MS.gene28321:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 4.4:-39056168 | MS.gene28321:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 4.4:-39058655 | MS.gene28321:CDS |
| CCTGAATGGACCTCTAATGT+TGG | 0.571638 | 4.4:-39059584 | MS.gene28321:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.576033 | 4.4:+39058790 | None:intergenic |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 4.4:+39056399 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 4.4:-39056802 | MS.gene28321:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 4.4:-39058795 | MS.gene28321:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 4.4:-39056070 | MS.gene28321:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 4.4:+39056723 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 4.4:+39060239 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 4.4:-39056856 | MS.gene28321:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 4.4:-39059685 | MS.gene28321:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 4.4:-39058312 | MS.gene28321:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 4.4:-39056125 | MS.gene28321:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 4.4:-39058551 | MS.gene28321:CDS |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 4.4:+39056247 | None:intergenic |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 4.4:-39056940 | MS.gene28321:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 4.4:+39058403 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 4.4:-39056259 | MS.gene28321:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 4.4:+39056904 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 4.4:+39059845 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 4.4:-39056927 | MS.gene28321:CDS |
| ATATTCCTCAAAGGAGAGGG+GGG | 0.613156 | 4.4:-39060269 | MS.gene28321:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 4.4:-39060278 | MS.gene28321:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 4.4:+39056808 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 4.4:-39058613 | MS.gene28321:CDS |
| GAAATTGGTGGAAATTACAA+TGG | 0.620723 | 4.4:-39060025 | MS.gene28321:CDS |
| GGCGTCAAAGCTAACTATAG+AGG | 0.622659 | 4.4:-39056295 | MS.gene28321:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 4.4:-39058607 | MS.gene28321:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 4.4:+39056576 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 4.4:+39056809 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 4.4:+39058508 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 4.4:-39060159 | MS.gene28321:CDS |
| TTTCCTTCACTATAACAACA+TGG | 0.644491 | 4.4:+39058769 | None:intergenic |
| TATTCCTCAAAGGAGAGGGG+GGG | 0.646481 | 4.4:-39060268 | MS.gene28321:CDS |
| CAATATTCCTCAAAGGAGAG+GGG | 0.647996 | 4.4:-39060271 | MS.gene28321:CDS |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 4.4:-39058617 | MS.gene28321:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 4.4:+39058468 | None:intergenic |
| ACTTGAACTTGTCACTACAA+AGG | 0.651739 | 4.4:-39059447 | MS.gene28321:CDS |
| AATATTCCTCAAAGGAGAGG+GGG | 0.653283 | 4.4:-39060270 | MS.gene28321:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 4.4:-39056692 | MS.gene28321:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 4.4:+39056855 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 4.4:-39059531 | MS.gene28321:CDS |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 4.4:-39056633 | MS.gene28321:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 4.4:-39056067 | MS.gene28321:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 4.4:-39058220 | MS.gene28321:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 4.4:+39058540 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr4.4:39058696-39058715 | None:intergenic | 15.0% |
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr4.4:39058248-39058267 | None:intergenic | 15.0% |
| !! | CATTTAATTATAACACAATA+TGG | + | chr4.4:39057304-39057323 | None:intergenic | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr4.4:39060126-39060145 | MS.gene28321:CDS | 15.0% |
| !!! | AAATTTAACTTTTTGGTTTT+TGG | - | chr4.4:39057071-39057090 | MS.gene28321:intron | 15.0% |
| !!! | CTCTATAAAATTTAACTTTT+TGG | - | chr4.4:39057064-39057083 | MS.gene28321:intron | 15.0% |
| !!! | TTCTTATGTTATGTTTTTTA+TGG | - | chr4.4:39057024-39057043 | MS.gene28321:intron | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr4.4:39058663-39058682 | MS.gene28321:CDS | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr4.4:39058703-39058722 | MS.gene28321:CDS | 15.0% |
| !! | AAAAAACATAACATAAGAAG+CGG | + | chr4.4:39057023-39057042 | None:intergenic | 20.0% |
| !! | AAAATGATATATCCGAAATT+CGG | + | chr4.4:39057408-39057427 | None:intergenic | 20.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr4.4:39056429-39056448 | MS.gene28321:CDS | 20.0% |
| !! | ACAAGAAAAATCAAAGTATA+TGG | + | chr4.4:39056988-39057007 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr4.4:39058659-39058678 | None:intergenic | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr4.4:39058630-39058649 | None:intergenic | 20.0% |
| !! | TAATCCATTCAATCAAATTA+TGG | - | chr4.4:39057226-39057245 | MS.gene28321:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr4.4:39057679-39057698 | MS.gene28321:intron | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr4.4:39056918-39056937 | None:intergenic | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr4.4:39057675-39057694 | MS.gene28321:intron | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr4.4:39059311-39059330 | None:intergenic | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr4.4:39059224-39059243 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr4.4:39058904-39058923 | MS.gene28321:intron | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr4.4:39058905-39058924 | MS.gene28321:intron | 20.0% |
| !!! | TTAACTTTTCTTAGTAATTG+AGG | + | chr4.4:39057259-39057278 | None:intergenic | 20.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr4.4:39059779-39059798 | MS.gene28321:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr4.4:39058824-39058843 | MS.gene28321:CDS | 25.0% |
| ! | AAATGATATATCCGAAATTC+GGG | + | chr4.4:39057407-39057426 | None:intergenic | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr4.4:39058825-39058844 | MS.gene28321:CDS | 25.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr4.4:39056270-39056289 | MS.gene28321:CDS | 25.0% |
| ! | ACACACTGCATAAAAAAAAA+GGG | + | chr4.4:39057451-39057470 | None:intergenic | 25.0% |
| ! | AGAAAAATCAAAGTATATGG+TGG | + | chr4.4:39056985-39057004 | None:intergenic | 25.0% |
| ! | ATAGCAAATTAAGTGTGATA+TGG | + | chr4.4:39058581-39058600 | None:intergenic | 25.0% |
| ! | ATTGCGATTAAATCAAACAA+AGG | - | chr4.4:39057144-39057163 | MS.gene28321:intron | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr4.4:39056297-39056316 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr4.4:39058391-39058410 | MS.gene28321:CDS | 25.0% |
| ! | GAAACATATGCTTCTTAAAA+TGG | + | chr4.4:39058278-39058297 | None:intergenic | 25.0% |
| ! | GCATATTATGAGAAACAAAT+TGG | + | chr4.4:39057107-39057126 | None:intergenic | 25.0% |
| ! | TACACACTGCATAAAAAAAA+AGG | + | chr4.4:39057452-39057471 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr4.4:39059230-39059249 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr4.4:39058053-39058072 | MS.gene28321:intron | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr4.4:39059026-39059045 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr4.4:39057627-39057646 | None:intergenic | 25.0% |
| !! | AAATGTGCTATTACAAGAAA+TGG | - | chr4.4:39056359-39056378 | MS.gene28321:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr4.4:39056627-39056646 | None:intergenic | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr4.4:39058457-39058476 | MS.gene28321:CDS | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr4.4:39058456-39058475 | MS.gene28321:CDS | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr4.4:39056681-39056700 | MS.gene28321:CDS | 25.0% |
| !!! | ATCACACTTAATTTGCTATA+GGG | - | chr4.4:39058582-39058601 | MS.gene28321:CDS | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr4.4:39056294-39056313 | MS.gene28321:CDS | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr4.4:39058363-39058382 | None:intergenic | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr4.4:39058179-39058198 | None:intergenic | 25.0% |
| !!! | TATCACACTTAATTTGCTAT+AGG | - | chr4.4:39058581-39058600 | MS.gene28321:CDS | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr4.4:39059841-39059860 | MS.gene28321:CDS | 25.0% |
| !!! | TTTCAAGTTATTGTGTATCA+TGG | - | chr4.4:39058294-39058313 | MS.gene28321:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr4.4:39056297-39056316 | MS.gene28321:CDS | 25.0% |
| AAATCAAACAAAGGCTACTT+TGG | - | chr4.4:39057153-39057172 | MS.gene28321:intron | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr4.4:39059053-39059072 | MS.gene28321:intron | 30.0% | |
| AATCCATCATATGCAAATGA+TGG | + | chr4.4:39056249-39056268 | None:intergenic | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr4.4:39057974-39057993 | MS.gene28321:intron | 30.0% | |
| ACCACCATAATTTGATTGAA+TGG | + | chr4.4:39057233-39057252 | None:intergenic | 30.0% | |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr4.4:39058691-39058710 | None:intergenic | 30.0% | |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr4.4:39058826-39058845 | MS.gene28321:CDS | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr4.4:39057682-39057701 | MS.gene28321:intron | 30.0% | |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr4.4:39059185-39059204 | MS.gene28321:intron | 30.0% | |
| ATGATAGTAACCAACATTAG+AGG | + | chr4.4:39056763-39056782 | None:intergenic | 30.0% | |
| ATGTCATCACCATACTTTAT+AGG | + | chr4.4:39056582-39056601 | None:intergenic | 30.0% | |
| ATTCCATGTTGTTATAGTGA+AGG | - | chr4.4:39057562-39057581 | MS.gene28321:CDS | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr4.4:39059778-39059797 | MS.gene28321:CDS | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr4.4:39059265-39059284 | None:intergenic | 30.0% | |
| GAAACGAACCTAAAAAATAG+TGG | - | chr4.4:39058168-39058187 | MS.gene28321:CDS | 30.0% | |
| GAAATTGGTGGAAATTACAA+TGG | - | chr4.4:39056309-39056328 | MS.gene28321:CDS | 30.0% | |
| GTATTGAAGATTCAACAACA+TGG | - | chr4.4:39059701-39059720 | MS.gene28321:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr4.4:39060018-39060037 | MS.gene28321:CDS | 30.0% | |
| TAACCAACAGAATGAAATCT+GGG | - | chr4.4:39058541-39058560 | MS.gene28321:CDS | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr4.4:39059567-39059586 | None:intergenic | 30.0% | |
| TCAGAGTTCATATCAGATAT+AGG | + | chr4.4:39056849-39056868 | None:intergenic | 30.0% | |
| TCCATTCAATCAAATTATGG+TGG | - | chr4.4:39057229-39057248 | MS.gene28321:intron | 30.0% | |
| TGATATCAAAATCACCTAGT+TGG | - | chr4.4:39056475-39056494 | MS.gene28321:CDS | 30.0% | |
| TGCAACTCTTAAACTTATGA+TGG | + | chr4.4:39058978-39058997 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr4.4:39057568-39057587 | MS.gene28321:CDS | 30.0% | |
| TTCAAGAACATAATCTACAG+AGG | + | chr4.4:39059761-39059780 | None:intergenic | 30.0% | |
| TTCAATGATTGAACTTGGTT+TGG | - | chr4.4:39059846-39059865 | MS.gene28321:CDS | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr4.4:39057926-39057945 | MS.gene28321:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr4.4:39058066-39058085 | MS.gene28321:intron | 30.0% | |
| TTTCCTTCACTATAACAACA+TGG | + | chr4.4:39057568-39057587 | None:intergenic | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr4.4:39057925-39057944 | MS.gene28321:intron | 30.0% | |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr4.4:39056132-39056151 | None:intergenic | 30.0% |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr4.4:39059808-39059827 | MS.gene28321:CDS | 30.0% |
| ! | ATTTTCTGATTCCCGAATTT+CGG | - | chr4.4:39057393-39057412 | MS.gene28321:intron | 30.0% |
| ! | CACATTTTCATCATAACTAG+TGG | + | chr4.4:39056346-39056365 | None:intergenic | 30.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr4.4:39056108-39056127 | None:intergenic | 30.0% |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr4.4:39059175-39059194 | None:intergenic | 30.0% |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr4.4:39056680-39056699 | MS.gene28321:CDS | 30.0% |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr4.4:39059751-39059770 | None:intergenic | 30.0% |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr4.4:39058713-39058732 | MS.gene28321:CDS | 30.0% |
| !! | TCACACTTAATTTGCTATAG+GGG | - | chr4.4:39058583-39058602 | MS.gene28321:CDS | 30.0% |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr4.4:39059642-39059661 | MS.gene28321:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr4.4:39058469-39058488 | MS.gene28321:CDS | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr4.4:39058465-39058484 | MS.gene28321:CDS | 30.0% |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr4.4:39058086-39058105 | MS.gene28321:intron | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr4.4:39058344-39058363 | None:intergenic | 30.0% |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr4.4:39058914-39058933 | MS.gene28321:intron | 30.0% |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr4.4:39058343-39058362 | None:intergenic | 30.0% |
| AACATAAGAAGCGGTGAAAT+AGG | + | chr4.4:39057014-39057033 | None:intergenic | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr4.4:39057797-39057816 | None:intergenic | 35.0% | |
| AACCAACAGAATGAAATCTG+GGG | - | chr4.4:39058542-39058561 | MS.gene28321:CDS | 35.0% | |
| AACCAAGGATGTTATGAACT+TGG | + | chr4.4:39059250-39059269 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr4.4:39059394-39059413 | MS.gene28321:intron | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr4.4:39059707-39059726 | MS.gene28321:CDS | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr4.4:39059304-39059323 | None:intergenic | 35.0% | |
| ACTTGAACTTGTCACTACAA+AGG | - | chr4.4:39056887-39056906 | MS.gene28321:CDS | 35.0% | |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr4.4:39060209-39060228 | MS.gene28321:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr4.4:39056554-39056573 | MS.gene28321:CDS | 35.0% | |
| AGTTGAAAACAACCTACAGA+TGG | + | chr4.4:39060090-39060109 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr4.4:39056608-39056627 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr4.4:39057783-39057802 | MS.gene28321:intron | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr4.4:39059303-39059322 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr4.4:39059385-39059404 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr4.4:39060158-39060177 | None:intergenic | 35.0% | |
| CTTCCATCATTTGCATATGA+TGG | - | chr4.4:39056243-39056262 | MS.gene28321:CDS | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr4.4:39057934-39057953 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr4.4:39059694-39059713 | None:intergenic | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr4.4:39059407-39059426 | MS.gene28321:CDS | 35.0% | |
| GAGCGAATACGAATTAAAGA+AGG | - | chr4.4:39057601-39057620 | MS.gene28321:CDS | 35.0% | |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr4.4:39056518-39056537 | MS.gene28321:CDS | 35.0% | |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr4.4:39058827-39058846 | MS.gene28321:CDS | 35.0% | |
| GCTCTTATTCACAGATAAGT+GGG | + | chr4.4:39059153-39059172 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr4.4:39057995-39058014 | MS.gene28321:intron | 35.0% | |
| GGTTCAATCATCCAACAAAT+TGG | - | chr4.4:39059553-39059572 | MS.gene28321:CDS | 35.0% | |
| GTAACCAACAGAATGAAATC+TGG | - | chr4.4:39058540-39058559 | MS.gene28321:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr4.4:39059651-39059670 | MS.gene28321:CDS | 35.0% | |
| TGGTGGAAATTACAATGGTA+TGG | - | chr4.4:39056314-39056333 | MS.gene28321:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr4.4:39059689-39059708 | None:intergenic | 35.0% | |
| TTCACATCGGTATAGAAGAA+TGG | + | chr4.4:39057784-39057803 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr4.4:39056630-39056649 | MS.gene28321:CDS | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr4.4:39058022-39058041 | MS.gene28321:intron | 35.0% | |
| ! | AAAGGCTACTTTGGCAAAAT+TGG | - | chr4.4:39057162-39057181 | MS.gene28321:intron | 35.0% |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr4.4:39058938-39058957 | MS.gene28321:intron | 35.0% |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr4.4:39059433-39059452 | None:intergenic | 35.0% |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr4.4:39056171-39056190 | MS.gene28321:CDS | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr4.4:39058143-39058162 | None:intergenic | 35.0% |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr4.4:39057717-39057736 | MS.gene28321:intron | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr4.4:39058939-39058958 | MS.gene28321:intron | 35.0% |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr4.4:39056938-39056957 | MS.gene28321:CDS | 35.0% |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr4.4:39059190-39059209 | None:intergenic | 35.0% |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr4.4:39058794-39058813 | MS.gene28321:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr4.4:39060166-39060185 | MS.gene28321:CDS | 35.0% |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr4.4:39059853-39059872 | MS.gene28321:CDS | 35.0% |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr4.4:39060161-39060180 | MS.gene28321:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr4.4:39058802-39058821 | None:intergenic | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr4.4:39060167-39060186 | MS.gene28321:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr4.4:39059990-39060009 | None:intergenic | 35.0% |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr4.4:39058085-39058104 | MS.gene28321:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr4.4:39058087-39058106 | MS.gene28321:intron | 35.0% |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr4.4:39058191-39058210 | MS.gene28321:CDS | 40.0% | |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr4.4:39058727-39058746 | MS.gene28321:CDS | 40.0% | |
| AATATTCCTCAAAGGAGAGG+GGG | - | chr4.4:39056064-39056083 | MS.gene28321:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr4.4:39059622-39059641 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr4.4:39058543-39058562 | MS.gene28321:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr4.4:39056061-39056080 | MS.gene28321:CDS | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr4.4:39057869-39057888 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr4.4:39059783-39059802 | MS.gene28321:CDS | 40.0% | |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr4.4:39059946-39059965 | MS.gene28321:CDS | 40.0% | |
| ATTACCTGTGGAAGAAGTCT+TGG | + | chr4.4:39057375-39057394 | None:intergenic | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr4.4:39058513-39058532 | None:intergenic | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr4.4:39056063-39056082 | MS.gene28321:CDS | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr4.4:39059245-39059264 | MS.gene28321:intron | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr4.4:39056098-39056117 | None:intergenic | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr4.4:39056062-39056081 | MS.gene28321:CDS | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr4.4:39056096-39056115 | MS.gene28321:CDS | 40.0% | |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr4.4:39059606-39059625 | MS.gene28321:CDS | 40.0% | |
| GAGGAATACTAGCACAAGTT+TGG | - | chr4.4:39056553-39056572 | MS.gene28321:CDS | 40.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr4.4:39056056-39056075 | MS.gene28321:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr4.4:39059154-39059173 | None:intergenic | 40.0% | |
| GGGAATCAGAAAATTACCTG+TGG | + | chr4.4:39057387-39057406 | None:intergenic | 40.0% | |
| GGTGAATGACTCAGATTTGA+AGG | - | chr4.4:39060197-39060216 | MS.gene28321:CDS | 40.0% | |
| GGTTACAAACTTACAACTCC+TGG | + | chr4.4:39058526-39058545 | None:intergenic | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr4.4:39058021-39058040 | MS.gene28321:intron | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr4.4:39056570-39056589 | MS.gene28321:CDS | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr4.4:39058155-39058174 | None:intergenic | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr4.4:39058114-39058133 | MS.gene28321:intron | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr4.4:39057721-39057740 | MS.gene28321:intron | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr4.4:39058505-39058524 | MS.gene28321:CDS | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr4.4:39058506-39058525 | None:intergenic | 40.0% | |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr4.4:39056736-39056755 | MS.gene28321:CDS | 40.0% | |
| TTGCTCGTTCGCAATATACA+TGG | - | chr4.4:39060264-39060283 | MS.gene28321:CDS | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr4.4:39056696-39056715 | MS.gene28321:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr4.4:39056532-39056551 | None:intergenic | 40.0% |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr4.4:39056175-39056194 | MS.gene28321:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr4.4:39056528-39056547 | MS.gene28321:CDS | 40.0% |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr4.4:39060075-39060094 | MS.gene28321:CDS | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr4.4:39056531-39056550 | MS.gene28321:CDS | 40.0% |
| !! | CTTAATTTGCTATAGGGGAG+TGG | - | chr4.4:39058588-39058607 | MS.gene28321:CDS | 40.0% |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr4.4:39059859-39059878 | MS.gene28321:CDS | 40.0% |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr4.4:39060225-39060244 | MS.gene28321:CDS | 40.0% |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr4.4:39059603-39059622 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr4.4:39059604-39059623 | None:intergenic | 40.0% |
| AAATTTGACCCTCACACTGG+TGG | - | chr4.4:39059517-39059536 | MS.gene28321:CDS | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr4.4:39058546-39058565 | MS.gene28321:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr4.4:39058547-39058566 | MS.gene28321:CDS | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr4.4:39058323-39058342 | MS.gene28321:CDS | 45.0% | |
| ATATTCCTCAAAGGAGAGGG+GGG | - | chr4.4:39056065-39056084 | MS.gene28321:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr4.4:39059528-39059547 | None:intergenic | 45.0% | |
| CATCATCTTGAGGAAGGACA+AGG | - | chr4.4:39057727-39057746 | MS.gene28321:intron | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr4.4:39056753-39056772 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr4.4:39056750-39056769 | MS.gene28321:CDS | 45.0% | |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr4.4:39059903-39059922 | None:intergenic | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr4.4:39060267-39060286 | MS.gene28321:CDS | 45.0% | |
| CTCTCATCAAGTGACCAACT+AGG | + | chr4.4:39056492-39056511 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr4.4:39059514-39059533 | MS.gene28321:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr4.4:39058741-39058760 | MS.gene28321:CDS | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr4.4:39057736-39057755 | MS.gene28321:intron | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr4.4:39059487-39059506 | MS.gene28321:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr4.4:39058030-39058049 | MS.gene28321:intron | 45.0% | |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr4.4:39059086-39059105 | None:intergenic | 45.0% | |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr4.4:39056942-39056961 | MS.gene28321:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr4.4:39059498-39059517 | None:intergenic | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr4.4:39058547-39058566 | None:intergenic | 45.0% | |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr4.4:39059482-39059501 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr4.4:39059904-39059923 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr4.4:39060176-39060195 | MS.gene28321:CDS | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr4.4:39057857-39057876 | MS.gene28321:intron | 45.0% | |
| TTACGCAGCGTGTGAATCTA+AGG | - | chr4.4:39057337-39057356 | MS.gene28321:intron | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr4.4:39056534-39056553 | MS.gene28321:CDS | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr4.4:39059609-39059628 | MS.gene28321:CDS | 45.0% |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr4.4:39056803-39056822 | MS.gene28321:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr4.4:39059614-39059633 | None:intergenic | 45.0% |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr4.4:39056065-39056084 | None:intergenic | 45.0% |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr4.4:39059203-39059222 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr4.4:39059720-39059739 | MS.gene28321:CDS | 45.0% |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr4.4:39057539-39057558 | MS.gene28321:CDS | 45.0% |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr4.4:39058751-39058770 | MS.gene28321:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr4.4:39059817-39059836 | MS.gene28321:CDS | 45.0% |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr4.4:39059478-39059497 | MS.gene28321:CDS | 50.0% | |
| ACCTGTGGAAGAAGTCTTGG+AGG | + | chr4.4:39057372-39057391 | None:intergenic | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr4.4:39058549-39058568 | MS.gene28321:CDS | 50.0% | |
| CACAGATAAGTGGGCAGATG+CGG | + | chr4.4:39059144-39059163 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr4.4:39058548-39058567 | MS.gene28321:CDS | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr4.4:39058417-39058436 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr4.4:39057863-39057882 | MS.gene28321:intron | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr4.4:39059529-39059548 | None:intergenic | 50.0% | |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr4.4:39057547-39057566 | None:intergenic | 50.0% | |
| TAAACGACCTCGACACTTCG+CGG | + | chr4.4:39056659-39056678 | None:intergenic | 50.0% | |
| TATTCCTCAAAGGAGAGGGG+GGG | - | chr4.4:39056066-39056085 | MS.gene28321:CDS | 50.0% | |
| TCCATTCACCATTGAGCCAG+AGG | + | chr4.4:39059938-39059957 | None:intergenic | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr4.4:39058099-39058118 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr4.4:39057829-39057848 | None:intergenic | 50.0% | |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr4.4:39059919-39059938 | MS.gene28321:CDS | 50.0% |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr4.4:39056183-39056202 | MS.gene28321:CDS | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr4.4:39059927-39059946 | MS.gene28321:CDS | 50.0% |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr4.4:39056705-39056724 | MS.gene28321:CDS | 50.0% |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr4.4:39058947-39058966 | MS.gene28321:intron | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr4.4:39059532-39059551 | MS.gene28321:CDS | 50.0% |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr4.4:39059529-39059548 | MS.gene28321:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr4.4:39059923-39059942 | None:intergenic | 50.0% |
| ACCAACCCTCACACCCTCAA+TGG | + | chr4.4:39058955-39058974 | None:intergenic | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr4.4:39058431-39058450 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr4.4:39058122-39058141 | MS.gene28321:intron | 55.0% | |
| CCAACCCTCACACCCTCAAT+GGG | + | chr4.4:39058954-39058973 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr4.4:39058550-39058569 | MS.gene28321:CDS | 55.0% | |
| GCCTCCAAGACTTCTTCCAC+AGG | - | chr4.4:39057368-39057387 | MS.gene28321:intron | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr4.4:39058596-39058615 | MS.gene28321:CDS | 55.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr4.4:39056726-39056745 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr4.4:39059934-39059953 | MS.gene28321:CDS | 55.0% |
| ! | GCGATTAGTCACGAGGTTCG+AGG | - | chr4.4:39056810-39056829 | MS.gene28321:CDS | 55.0% |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr4.4:39058946-39058965 | MS.gene28321:intron | 55.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr4.4:39056717-39056736 | None:intergenic | 60.0% | |
| AGAGGGGGGGAATCAGCCTT+TGG | - | chr4.4:39056079-39056098 | MS.gene28321:CDS | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr4.4:39058426-39058445 | None:intergenic | 60.0% | |
| GATTCCCCCCCTCTCCTTTG+AGG | + | chr4.4:39056073-39056092 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr4.4:39058951-39058970 | MS.gene28321:intron | 60.0% |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr4.4:39056649-39056668 | MS.gene28321:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr4.4:39059135-39059154 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39056054 | 39060302 | 39056054 | ID=MS.gene28321 |
| chr4.4 | mRNA | 39056054 | 39060302 | 39056054 | ID=MS.gene28321.t1;Parent=MS.gene28321 |
| chr4.4 | exon | 39059397 | 39060302 | 39059397 | ID=MS.gene28321.t1.exon1;Parent=MS.gene28321.t1 |
| chr4.4 | CDS | 39059397 | 39060302 | 39059397 | ID=cds.MS.gene28321.t1;Parent=MS.gene28321.t1 |
| chr4.4 | exon | 39058967 | 39059011 | 39058967 | ID=MS.gene28321.t1.exon2;Parent=MS.gene28321.t1 |
| chr4.4 | CDS | 39058967 | 39059011 | 39058967 | ID=cds.MS.gene28321.t1;Parent=MS.gene28321.t1 |
| chr4.4 | exon | 39058144 | 39058890 | 39058144 | ID=MS.gene28321.t1.exon3;Parent=MS.gene28321.t1 |
| chr4.4 | CDS | 39058144 | 39058890 | 39058144 | ID=cds.MS.gene28321.t1;Parent=MS.gene28321.t1 |
| chr4.4 | exon | 39057508 | 39057631 | 39057508 | ID=MS.gene28321.t1.exon4;Parent=MS.gene28321.t1 |
| chr4.4 | CDS | 39057508 | 39057631 | 39057508 | ID=cds.MS.gene28321.t1;Parent=MS.gene28321.t1 |
| chr4.4 | exon | 39056054 | 39056979 | 39056054 | ID=MS.gene28321.t1.exon5;Parent=MS.gene28321.t1 |
| chr4.4 | CDS | 39056054 | 39056979 | 39056054 | ID=cds.MS.gene28321.t1;Parent=MS.gene28321.t1 |
| Gene Sequence |
| Protein sequence |
