Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056603.t1 | XP_024636796.1 | 96.8 | 915 | 25 | 2 | 1 | 914 | 1 | 912 | 0.00E+00 | 1711 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056603.t1 | O22864 | 48.0 | 971 | 400 | 25 | 1 | 908 | 1 | 929 | 4.9e-208 | 726.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056603.t1 | G7JDS3 | 96.8 | 915 | 25 | 2 | 1 | 914 | 1 | 912 | 0.0e+00 | 1711.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene056603.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056401 | MS.gene056603 | 0.868948 | 4.47E-66 | -1.69E-46 |
| MS.gene056603 | MS.gene28321 | 0.929699 | 4.77E-93 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056401 | MS.gene056603 | PPI |
| MS.gene056603 | MS.gene032204 | PPI |
| MS.gene056603 | MS.gene85257 | PPI |
| MS.gene056973 | MS.gene056603 | PPI |
| MS.gene003861 | MS.gene056603 | PPI |
| MS.gene051987 | MS.gene056603 | PPI |
| MS.gene056603 | MS.gene28321 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056603.t1 | MTR_4g068000 | 96.721 | 915 | 26 | 2 | 1 | 914 | 1 | 912 | 0.0 | 1841 |
| MS.gene056603.t1 | MTR_2g099350 | 59.437 | 959 | 325 | 17 | 1 | 908 | 1 | 946 | 0.0 | 1066 |
| MS.gene056603.t1 | MTR_0022s0430 | 36.717 | 798 | 402 | 20 | 149 | 908 | 112 | 844 | 1.08e-137 | 432 |
| MS.gene056603.t1 | MTR_0022s0430 | 36.650 | 794 | 400 | 20 | 153 | 908 | 1 | 729 | 3.30e-137 | 427 |
| MS.gene056603.t1 | MTR_3g115400 | 39.744 | 546 | 286 | 12 | 148 | 662 | 138 | 671 | 1.43e-116 | 378 |
| MS.gene056603.t1 | MTR_1g100970 | 40.672 | 536 | 276 | 14 | 149 | 656 | 44 | 565 | 4.35e-113 | 368 |
| MS.gene056603.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 829 | 908 | 806 | 886 | 3.19e-15 | 80.9 |
| MS.gene056603.t1 | MTR_1g100970 | 40.530 | 528 | 288 | 10 | 149 | 656 | 124 | 645 | 2.22e-112 | 368 |
| MS.gene056603.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 829 | 908 | 886 | 966 | 3.55e-15 | 80.9 |
| MS.gene056603.t1 | MTR_1g100970 | 40.217 | 368 | 184 | 10 | 313 | 656 | 2 | 357 | 2.72e-70 | 247 |
| MS.gene056603.t1 | MTR_1g100970 | 44.444 | 81 | 44 | 1 | 829 | 908 | 598 | 678 | 2.04e-15 | 81.3 |
| MS.gene056603.t1 | MTR_5g099060 | 33.884 | 363 | 196 | 11 | 145 | 499 | 122 | 448 | 5.78e-46 | 179 |
| MS.gene056603.t1 | MTR_5g099060 | 67.778 | 90 | 25 | 1 | 575 | 664 | 607 | 692 | 3.53e-31 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 50.104 | 958 | 386 | 24 | 1 | 908 | 1 | 916 | 0.0 | 789 |
| MS.gene056603.t1 | AT2G43500 | 49.434 | 971 | 386 | 25 | 1 | 908 | 1 | 929 | 0.0 | 780 |
| MS.gene056603.t1 | AT2G43500 | 49.434 | 971 | 386 | 25 | 1 | 908 | 1 | 929 | 0.0 | 780 |
| MS.gene056603.t1 | AT2G43500 | 49.331 | 971 | 387 | 25 | 1 | 908 | 1 | 929 | 0.0 | 778 |
| MS.gene056603.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 18 | 908 | 23 | 875 | 0.0 | 748 |
| MS.gene056603.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 18 | 908 | 23 | 875 | 0.0 | 748 |
| MS.gene056603.t1 | AT3G59580 | 49.783 | 920 | 366 | 24 | 18 | 908 | 23 | 875 | 0.0 | 748 |
| MS.gene056603.t1 | AT1G64530 | 41.544 | 544 | 283 | 12 | 144 | 655 | 87 | 627 | 2.01e-119 | 384 |
| MS.gene056603.t1 | AT1G64530 | 45.679 | 81 | 42 | 2 | 829 | 908 | 744 | 823 | 1.85e-13 | 75.1 |
| MS.gene056603.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 148 | 664 | 104 | 634 | 1.57e-118 | 381 |
| MS.gene056603.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 148 | 664 | 104 | 634 | 1.57e-118 | 381 |
| MS.gene056603.t1 | AT1G20640 | 41.486 | 552 | 267 | 12 | 148 | 664 | 104 | 634 | 1.57e-118 | 381 |
| MS.gene056603.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 147 | 651 | 104 | 616 | 2.07e-118 | 380 |
| MS.gene056603.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 147 | 651 | 104 | 616 | 2.07e-118 | 380 |
| MS.gene056603.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 147 | 651 | 104 | 616 | 2.07e-118 | 380 |
| MS.gene056603.t1 | AT1G76350 | 41.887 | 530 | 266 | 12 | 147 | 651 | 104 | 616 | 2.07e-118 | 380 |
| MS.gene056603.t1 | AT4G24020 | 39.685 | 572 | 299 | 14 | 114 | 655 | 107 | 662 | 6.28e-111 | 364 |
| MS.gene056603.t1 | AT4G24020 | 45.000 | 80 | 44 | 0 | 829 | 908 | 866 | 945 | 1.34e-16 | 85.5 |
| MS.gene056603.t1 | AT1G64530 | 42.702 | 459 | 229 | 12 | 221 | 655 | 24 | 472 | 1.77e-104 | 340 |
| MS.gene056603.t1 | AT1G64530 | 53.125 | 64 | 29 | 1 | 829 | 891 | 589 | 652 | 1.78e-13 | 75.1 |
| MS.gene056603.t1 | AT2G17150 | 37.329 | 584 | 289 | 14 | 142 | 662 | 117 | 686 | 3.06e-103 | 342 |
| MS.gene056603.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 829 | 903 | 814 | 889 | 6.94e-12 | 70.1 |
| MS.gene056603.t1 | AT2G17150 | 37.329 | 584 | 289 | 14 | 142 | 662 | 117 | 686 | 3.06e-103 | 342 |
| MS.gene056603.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 829 | 903 | 814 | 889 | 6.94e-12 | 70.1 |
| MS.gene056603.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 142 | 662 | 146 | 726 | 2.69e-93 | 316 |
| MS.gene056603.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 829 | 905 | 865 | 942 | 8.15e-11 | 66.6 |
| MS.gene056603.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 142 | 662 | 146 | 726 | 2.69e-93 | 316 |
| MS.gene056603.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 829 | 905 | 865 | 942 | 8.15e-11 | 66.6 |
| MS.gene056603.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 142 | 662 | 146 | 726 | 2.69e-93 | 316 |
| MS.gene056603.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 829 | 905 | 865 | 942 | 8.15e-11 | 66.6 |
| MS.gene056603.t1 | AT4G35270 | 35.452 | 598 | 292 | 19 | 142 | 662 | 146 | 726 | 2.69e-93 | 316 |
| MS.gene056603.t1 | AT4G35270 | 38.462 | 78 | 47 | 1 | 829 | 905 | 865 | 942 | 8.15e-11 | 66.6 |
| MS.gene056603.t1 | AT4G38340 | 36.207 | 522 | 261 | 14 | 144 | 655 | 39 | 498 | 1.24e-84 | 286 |
| MS.gene056603.t1 | AT4G38340 | 36.346 | 520 | 259 | 14 | 144 | 653 | 110 | 567 | 5.93e-84 | 286 |
| MS.gene056603.t1 | AT2G17150 | 33.712 | 528 | 273 | 13 | 142 | 606 | 117 | 630 | 7.03e-75 | 259 |
| MS.gene056603.t1 | AT2G17150 | 33.712 | 528 | 273 | 13 | 142 | 606 | 117 | 630 | 7.03e-75 | 259 |
| MS.gene056603.t1 | AT2G17150 | 33.586 | 527 | 272 | 14 | 142 | 606 | 117 | 627 | 1.37e-73 | 255 |
| MS.gene056603.t1 | AT4G24020 | 40.102 | 394 | 202 | 9 | 283 | 655 | 2 | 382 | 3.33e-72 | 252 |
| MS.gene056603.t1 | AT4G24020 | 45.000 | 80 | 44 | 0 | 829 | 908 | 586 | 665 | 1.06e-16 | 85.5 |
| MS.gene056603.t1 | AT2G17150 | 36.256 | 422 | 198 | 10 | 300 | 662 | 22 | 431 | 9.46e-65 | 230 |
| MS.gene056603.t1 | AT2G17150 | 43.421 | 76 | 42 | 1 | 829 | 903 | 559 | 634 | 4.72e-12 | 70.5 |
Find 149 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTGCTTTATCCTTCTTTA+AGG | 0.159389 | 4.3:-36795550 | MS.gene056603:CDS |
| TCTAATTCTTTGTCAAAATT+AGG | 0.287200 | 4.3:+36795153 | None:intergenic |
| ATTTGTTTCTCATGCACTTC+AGG | 0.297246 | 4.3:-36795130 | MS.gene056603:intron |
| TGAATGCTGCCGTTGCAATT+AGG | 0.297724 | 4.3:-36794211 | MS.gene056603:CDS |
| AAAAGATTTAAGTTACAAAA+TGG | 0.299236 | 4.3:-36791943 | MS.gene056603:CDS |
| CCCTCTCCTTTGAGGAATAT+TGG | 0.300677 | 4.3:+36796003 | None:intergenic |
| TCTTGTTGTCCTGGACTTCC+TGG | 0.301260 | 4.3:-36795363 | MS.gene056603:CDS |
| CACACTGGTGGATTTGTTGC+AGG | 0.303903 | 4.3:-36792540 | MS.gene056603:CDS |
| TTGCTATATCAATGATAAAA+TGG | 0.306339 | 4.3:-36794393 | MS.gene056603:CDS |
| CATATTCTCTTCAGAGTTGT+TGG | 0.308883 | 4.3:+36792687 | None:intergenic |
| AATTTAGATTCACAACAAAA+TGG | 0.321611 | 4.3:-36795639 | MS.gene056603:CDS |
| TTTCTTCCGATCAATATGAT+AGG | 0.325828 | 4.3:-36794143 | MS.gene056603:CDS |
| CTTTCATCATTTGCATATGA+TGG | 0.328114 | 4.3:-36795825 | MS.gene056603:CDS |
| AATTTAGCTGAACACATAAA+TGG | 0.329071 | 4.3:-36795798 | MS.gene056603:CDS |
| GGAGAATTTGTAAGAGTTTG+AGG | 0.335074 | 4.3:-36794073 | MS.gene056603:CDS |
| GAGGAATACTAGCACAAGTT+TGG | 0.342017 | 4.3:-36795515 | MS.gene056603:CDS |
| AAATGTGCTATTACAAGAAA+TGG | 0.345785 | 4.3:-36795709 | MS.gene056603:CDS |
| TTCAATGATTGAACTTGGTT+TGG | 0.346200 | 4.3:-36792223 | MS.gene056603:CDS |
| TAATTCATGTGAGGCAGAAT+TGG | 0.346673 | 4.3:-36792418 | MS.gene056603:CDS |
| TAATCTACAGAGGTTTGTTT+AGG | 0.349811 | 4.3:+36792321 | None:intergenic |
| AACATGTCATCTGAAGTTAA+TGG | 0.354035 | 4.3:+36795939 | None:intergenic |
| GAGGAAGGACAAGGTATATC+TGG | 0.362717 | 4.3:-36794332 | MS.gene056603:CDS |
| TTGTTAGATCAAAAGCTTGC+AGG | 0.364988 | 4.3:-36795438 | MS.gene056603:CDS |
| AGGTCATCACCATACTTTAT+AGG | 0.370674 | 4.3:+36795489 | None:intergenic |
| ATGGTTGATCACTTGTAGTT+AGG | 0.371200 | 4.3:+36795463 | None:intergenic |
| GGTTCAATCATCCAACAAAT+TGG | 0.376103 | 4.3:-36792516 | MS.gene056603:CDS |
| TATTATGCGTACCAATTTGT+TGG | 0.379422 | 4.3:+36792505 | None:intergenic |
| AAGATTCAACAACATGGCTT+TGG | 0.385657 | 4.3:-36792362 | MS.gene056603:CDS |
| ATTGAACTTGGTTTGGAAGA+AGG | 0.389900 | 4.3:-36792216 | MS.gene056603:CDS |
| TTACGCAGCGTGTGAATCTA+AGG | 0.393081 | 4.3:-36794731 | MS.gene056603:intron |
| TTTCAAAAGGAAAATGTCTC+AGG | 0.395471 | 4.3:-36794002 | MS.gene056603:CDS |
| TCGTTTCGTTGAATGACATC+TGG | 0.396728 | 4.3:+36793916 | None:intergenic |
| GCTGATTCCCCTCTCCTTTG+AGG | 0.402348 | 4.3:+36795995 | None:intergenic |
| GCTGAACTAAGAGGGATAGA+AGG | 0.402797 | 4.3:-36794038 | MS.gene056603:CDS |
| CCAACATTAGAGGTCCATTC+AGG | 0.403875 | 4.3:+36795318 | None:intergenic |
| TTTCATTAGAACTTGTCATA+TGG | 0.407153 | 4.3:+36794444 | None:intergenic |
| TCAGAGTTCATATCAGATAT+AGG | 0.407580 | 4.3:+36795222 | None:intergenic |
| ATGATAGTAACCAACATTAG+AGG | 0.414995 | 4.3:+36795308 | None:intergenic |
| GTTTGGGCACCTATAAAGTA+TGG | 0.426412 | 4.3:-36795498 | MS.gene056603:CDS |
| ATGAACTTTGATAGCTATGC+TGG | 0.431040 | 4.3:-36795897 | MS.gene056603:CDS |
| ATGGTGAATGGAAGTTCATC+AGG | 0.440811 | 4.3:-36792123 | MS.gene056603:CDS |
| GATTCTGTCCAAGGAGTTGA+AGG | 0.441649 | 4.3:-36792582 | MS.gene056603:CDS |
| TCAGAACTCCTTCAACTCCT+TGG | 0.443312 | 4.3:+36792574 | None:intergenic |
| GACTACCAGAAAAGTATTGT+TGG | 0.443666 | 4.3:+36793270 | None:intergenic |
| TTGCATGATGTTGGCTCTCA+TGG | 0.443915 | 4.3:-36792252 | MS.gene056603:CDS |
| GTCGATAGTGAATCAAAATT+CGG | 0.451171 | 4.3:-36792051 | MS.gene056603:CDS |
| ATTACCTGTGGAAGAAGTCT+TGG | 0.454612 | 4.3:+36794696 | None:intergenic |
| ATCGAATGCCTCTGGCTCAA+TGG | 0.458272 | 4.3:-36792142 | MS.gene056603:CDS |
| TAAACGACCTCGACACTTCG+CGG | 0.462374 | 4.3:+36795412 | None:intergenic |
| ACATCTTCATCCTCCAACTT+AGG | 0.466143 | 4.3:+36792450 | None:intergenic |
| CTTTGGACACCATTTGATAG+TGG | 0.468888 | 4.3:-36795972 | MS.gene056603:CDS |
| TTAACTCGCATGTTCCTGAA+TGG | 0.472060 | 4.3:-36795332 | MS.gene056603:CDS |
| AGGAATACTAGCACAAGTTT+GGG | 0.473111 | 4.3:-36795514 | MS.gene056603:CDS |
| GAATCTTCAATACAGTCAAC+AGG | 0.473305 | 4.3:+36792378 | None:intergenic |
| GCCTCTGGCTCAATGGTGAA+TGG | 0.475824 | 4.3:-36792135 | MS.gene056603:CDS |
| ACCGATTCATCGAATGCCTC+TGG | 0.477307 | 4.3:-36792150 | MS.gene056603:CDS |
| TGGTGGAAATTACAATGGTA+TGG | 0.477511 | 4.3:-36795754 | MS.gene056603:CDS |
| AGGAGAGGGGAATCAGCCTT+TGG | 0.478927 | 4.3:-36795989 | MS.gene056603:CDS |
| AATAGTAGTTTGCATGATGT+TGG | 0.490581 | 4.3:-36792261 | MS.gene056603:CDS |
| TTCTCAATATGAGTTTCAAA+AGG | 0.490680 | 4.3:-36794015 | MS.gene056603:CDS |
| GCCAGAGGCATTCGATGAAT+CGG | 0.493281 | 4.3:+36792149 | None:intergenic |
| AGCTATGCTGGTTGGTGCAA+TGG | 0.494942 | 4.3:-36795885 | MS.gene056603:CDS |
| TTCTTCCGATCAATATGATA+GGG | 0.494971 | 4.3:-36794142 | MS.gene056603:CDS |
| GTTTCAGAAGCTGAACTAAG+AGG | 0.495063 | 4.3:-36794047 | MS.gene056603:CDS |
| GAAAACCTCAGTACCTAAGT+TGG | 0.500516 | 4.3:-36792463 | MS.gene056603:CDS |
| TCCTTCTTTAAGGAATCAGC+TGG | 0.500538 | 4.3:-36795540 | MS.gene056603:CDS |
| ACAATTTGTCAGATACTATG+AGG | 0.500861 | 4.3:-36794094 | MS.gene056603:CDS |
| AAAATGGGATCTTGTTGTCC+TGG | 0.501858 | 4.3:-36795372 | MS.gene056603:CDS |
| TCGGTCATGCTTGAAGAAGT+AGG | 0.504724 | 4.3:+36792168 | None:intergenic |
| CATCATCAAGATACTTGAGT+TGG | 0.506954 | 4.3:+36791914 | None:intergenic |
| AGCGTTTAGTAGCGGTGACC+AGG | 0.506987 | 4.3:-36793946 | MS.gene056603:CDS |
| ACCAATATTCCTCAAAGGAG+AGG | 0.507368 | 4.3:-36796004 | MS.gene056603:CDS |
| ACCAGCTGATTCCTTAAAGA+AGG | 0.508019 | 4.3:+36795539 | None:intergenic |
| AACAAGTGGTTCAAGAAAGC+AGG | 0.511373 | 4.3:-36793342 | MS.gene056603:CDS |
| TGCGAGTTAAACACGCGACC+AGG | 0.519436 | 4.3:+36795345 | None:intergenic |
| ACCTGTGGAAGAAGTCTTGG+AGG | 0.520926 | 4.3:+36794699 | None:intergenic |
| TGATATCAAAATCACCTAGT+TGG | 0.524042 | 4.3:-36795593 | MS.gene056603:CDS |
| CAAGTATCTTGATGATGAAG+AGG | 0.525082 | 4.3:-36791908 | MS.gene056603:CDS |
| TTCACATCGGTATAGAAGAA+TGG | 0.526209 | 4.3:+36794287 | None:intergenic |
| GGTGAATGACTCAGATTTGA+AGG | 0.529251 | 4.3:-36791872 | MS.gene056603:CDS |
| AACACGCGACCAGGAAGTCC+AGG | 0.529959 | 4.3:+36795354 | None:intergenic |
| TTTAAGGAATCAGCTGGTGG+AGG | 0.534319 | 4.3:-36795534 | MS.gene056603:CDS |
| ATGACATCTGGAATAAATCC+TGG | 0.537640 | 4.3:+36793928 | None:intergenic |
| CGGTCATGCTTGAAGAAGTA+GGG | 0.539130 | 4.3:+36792169 | None:intergenic |
| TCTTGATGATGAAGAGGAAT+GGG | 0.541215 | 4.3:-36791902 | MS.gene056603:CDS |
| TGAAGAGGAATGGGTGATGT+TGG | 0.542821 | 4.3:-36791893 | MS.gene056603:CDS |
| AGAACAAGATCAATGTGGGT+TGG | 0.543970 | 4.3:-36792286 | MS.gene056603:CDS |
| TGTTGTTATAGTGAAGGAAA+AGG | 0.544964 | 4.3:-36794500 | MS.gene056603:CDS |
| CTTGGTTTGGAAGAAGGAAA+AGG | 0.545190 | 4.3:-36792210 | MS.gene056603:CDS |
| AACCTCAGTACCTAAGTTGG+AGG | 0.547544 | 4.3:-36792460 | MS.gene056603:CDS |
| GATCACTTGTAGTTAGGATG+AGG | 0.549158 | 4.3:+36795469 | None:intergenic |
| AAATCAAGCTGCTTACAGTC+AGG | 0.553977 | 4.3:-36793877 | MS.gene056603:intron |
| TTCTTTAAGGAATCAGCTGG+TGG | 0.555577 | 4.3:-36795537 | MS.gene056603:CDS |
| AAATTTGACCCTCACACTGG+TGG | 0.556063 | 4.3:-36792552 | MS.gene056603:CDS |
| CTGCCGTTGCAATTAGGCTA+AGG | 0.556511 | 4.3:-36794205 | MS.gene056603:CDS |
| GCGATTAGTCACGAGGTTCG+AGG | 0.560165 | 4.3:-36795258 | MS.gene056603:CDS |
| CCAATATTCCTCAAAGGAGA+GGG | 0.562272 | 4.3:-36796003 | MS.gene056603:CDS |
| TGAGAGTTGCCCCTAGACAT+AGG | 0.562581 | 4.3:+36793972 | None:intergenic |
| CTGAAATTTGACCCTCACAC+TGG | 0.562922 | 4.3:-36792555 | MS.gene056603:CDS |
| GCCTCCAAGACTTCTTCCAC+AGG | 0.567011 | 4.3:-36794700 | MS.gene056603:intron |
| TTCAATACAGTCAACAGGAA+TGG | 0.567975 | 4.3:+36792383 | None:intergenic |
| ATCAATGATAAAATGGTAGG+AGG | 0.568083 | 4.3:-36794386 | MS.gene056603:CDS |
| ATGGCTTTGGACAAAGACTC+AGG | 0.569057 | 4.3:-36792349 | MS.gene056603:CDS |
| GAGCGAATACGAATTAAAGA+AGG | 0.570990 | 4.3:-36794467 | MS.gene056603:CDS |
| ATTCCATGTTGTTATAGTGA+AGG | 0.571178 | 4.3:-36794506 | MS.gene056603:CDS |
| ATCTTGATGATGAAGAGGAA+TGG | 0.571443 | 4.3:-36791903 | MS.gene056603:CDS |
| TATATCAATGATAAAATGGT+AGG | 0.571576 | 4.3:-36794389 | MS.gene056603:CDS |
| CCTGAATGGACCTCTAATGT+TGG | 0.571638 | 4.3:-36795318 | MS.gene056603:CDS |
| GGAATCCATGTCAGTGCTAG+AGG | 0.576033 | 4.3:+36794524 | None:intergenic |
| TCCATTCACCATTGAGCCAG+AGG | 0.576842 | 4.3:+36792134 | None:intergenic |
| ACTGGTGGATTTGTTGCAGG+AGG | 0.579516 | 4.3:-36792537 | MS.gene056603:CDS |
| GTTTACCTCTAGCACTGACA+TGG | 0.580401 | 4.3:-36794529 | MS.gene056603:CDS |
| TTGCTCGTTCGCAATATACA+TGG | 0.581173 | 4.3:-36791805 | MS.gene056603:CDS |
| ATCCTCCAACTTAGGTACTG+AGG | 0.587825 | 4.3:+36792458 | None:intergenic |
| CACTATCAAATGGTGTCCAA+AGG | 0.587917 | 4.3:+36795973 | None:intergenic |
| ACCGTGCTTGATTCTGTCCA+AGG | 0.587988 | 4.3:-36792591 | MS.gene056603:CDS |
| CAGGTTACCGCGAAGTGTCG+AGG | 0.588688 | 4.3:-36795419 | MS.gene056603:CDS |
| TTTCAGAAGCTGAACTAAGA+GGG | 0.591675 | 4.3:-36794046 | MS.gene056603:CDS |
| AGATTTGAAGGAATGTGTAG+AGG | 0.591944 | 4.3:-36791860 | MS.gene056603:CDS |
| ATTCTTCTATACCGATGTGA+AGG | 0.593072 | 4.3:-36794285 | MS.gene056603:CDS |
| AGTTGAAAACAACCTACAGA+TGG | 0.595183 | 4.3:+36791982 | None:intergenic |
| AAGAGAATATGCAGACAACA+TGG | 0.598011 | 4.3:-36792675 | MS.gene056603:CDS |
| GAACTCCCTATCATATTGAT+CGG | 0.598238 | 4.3:+36794137 | None:intergenic |
| TTCAAGTTCGATCCATCTGT+AGG | 0.601990 | 4.3:-36791994 | MS.gene056603:CDS |
| ACTTTATTTATCTTGCGCGA+TGG | 0.602825 | 4.3:+36792639 | None:intergenic |
| CTCTCATCAAGTGACCAACT+AGG | 0.606095 | 4.3:+36795579 | None:intergenic |
| GACAACATGGAATTTCAAGA+TGG | 0.607708 | 4.3:-36792662 | MS.gene056603:CDS |
| GGTGTCAAAGCTAACTATAG+AGG | 0.613947 | 4.3:-36792030 | MS.gene056603:CDS |
| GGAAGACCAATATTCCTCAA+AGG | 0.615335 | 4.3:-36796009 | MS.gene056603:CDS |
| GCAACAAATCCACCAGTGTG+AGG | 0.619119 | 4.3:+36792543 | None:intergenic |
| TCTGAACATCATCTTGAGGA+AGG | 0.620522 | 4.3:-36794347 | MS.gene056603:CDS |
| GAAATTGGTGGAAATTACAA+TGG | 0.620723 | 4.3:-36795759 | MS.gene056603:CDS |
| CATCATCTTGAGGAAGGACA+AGG | 0.623347 | 4.3:-36794341 | MS.gene056603:CDS |
| TTCAAGAACATAATCTACAG+AGG | 0.626110 | 4.3:+36792311 | None:intergenic |
| CAACAAATCCACCAGTGTGA+GGG | 0.632421 | 4.3:+36792544 | None:intergenic |
| TTTCGCGCGTGATGAACAAG+CGG | 0.638493 | 4.3:+36794242 | None:intergenic |
| ACTTTGATAGCTATGCTGGT+TGG | 0.641227 | 4.3:-36795893 | MS.gene056603:CDS |
| TTTCCTTCACTATAACAACA+TGG | 0.644491 | 4.3:+36794503 | None:intergenic |
| ATGTTCTGAACATCATCTTG+AGG | 0.650977 | 4.3:-36794351 | MS.gene056603:CDS |
| ACTCCTTAGCCTAATTGCAA+CGG | 0.651625 | 4.3:+36794202 | None:intergenic |
| ACTTGAACTTGTCACTACAA+AGG | 0.651739 | 4.3:-36795181 | MS.gene056603:CDS |
| TCTTGTTTCTAATTCATGTG+AGG | 0.659934 | 4.3:-36792427 | MS.gene056603:CDS |
| TCCTTGGACAGAATCAAGCA+CGG | 0.660179 | 4.3:+36792590 | None:intergenic |
| AGATCATGCGATTAGTCACG+AGG | 0.673342 | 4.3:-36795265 | MS.gene056603:CDS |
| CAATATTCCTCAAAGGAGAG+GGG | 0.686366 | 4.3:-36796002 | MS.gene056603:CDS |
| GTATTGAAGATTCAACAACA+TGG | 0.706035 | 4.3:-36792368 | MS.gene056603:CDS |
| CTCGTTCGCAATATACATGG+CGG | 0.709197 | 4.3:-36791802 | MS.gene056603:CDS |
| TCTCAGATAGCGTTTAGTAG+CGG | 0.712734 | 4.3:-36793954 | MS.gene056603:CDS |
| AACATCATAAGCCTTCACAT+CGG | 0.714348 | 4.3:+36794274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACTACAAATGTTAAA+AGG | + | chr4.3:36794427-36794446 | None:intergenic | 15.0% |
| !! | ATTTCACATTAAATTCTAAA+AGG | + | chr4.3:36793980-36793999 | None:intergenic | 15.0% |
| !! | CATTTAATTATAACACAATA+TGG | + | chr4.3:36793036-36793055 | None:intergenic | 15.0% |
| !!! | AAAAGATTTAAGTTACAAAA+TGG | - | chr4.3:36795857-36795876 | MS.gene056603:CDS | 15.0% |
| !!! | AAATTTAACTTTTTGGTTTT+TGG | - | chr4.3:36792803-36792822 | MS.gene056603:intron | 15.0% |
| !!! | CTCTATAAAATTTAACTTTT+TGG | - | chr4.3:36792796-36792815 | MS.gene056603:intron | 15.0% |
| !!! | TTCTTATGTTATGTTTTTTA+TGG | - | chr4.3:36792756-36792775 | MS.gene056603:intron | 15.0% |
| !!! | TTGCTATTTTTAATGTATTT+TGG | - | chr4.3:36794394-36794413 | MS.gene056603:CDS | 15.0% |
| !!! | TTTGTAGTAATTTTTCTTAT+AGG | - | chr4.3:36794434-36794453 | MS.gene056603:CDS | 15.0% |
| !! | AAAAAACATAACATAAGAAG+CGG | + | chr4.3:36792755-36792774 | None:intergenic | 20.0% |
| !! | AAAATGATATATCCGAAATT+CGG | + | chr4.3:36793140-36793159 | None:intergenic | 20.0% |
| !! | AATTTAGATTCACAACAAAA+TGG | - | chr4.3:36792161-36792180 | MS.gene056603:CDS | 20.0% |
| !! | ACAAGAAAAATCAAAGTATA+TGG | + | chr4.3:36792720-36792739 | None:intergenic | 20.0% |
| !! | ACATTAAAAATAGCAACAAA+AGG | + | chr4.3:36794390-36794409 | None:intergenic | 20.0% |
| !! | CAAAGTTAAAAGATAAATCA+AGG | + | chr4.3:36794361-36794380 | None:intergenic | 20.0% |
| !! | TAATCCATTCAATCAAATTA+TGG | - | chr4.3:36792958-36792977 | MS.gene056603:intron | 20.0% |
| !! | TATATCAATGATAAAATGGT+AGG | - | chr4.3:36793411-36793430 | MS.gene056603:intron | 20.0% |
| !! | TCTAATTCTTTGTCAAAATT+AGG | + | chr4.3:36792650-36792669 | None:intergenic | 20.0% |
| !! | TTGCTATATCAATGATAAAA+TGG | - | chr4.3:36793407-36793426 | MS.gene056603:intron | 20.0% |
| !! | TTTATTGACAAGAATTAACT+AGG | + | chr4.3:36795042-36795061 | None:intergenic | 20.0% |
| !!! | AAATGTATATAAGTTGGAAT+TGG | + | chr4.3:36794955-36794974 | None:intergenic | 20.0% |
| !!! | ATTAACTCAGCTTATTATTT+TGG | - | chr4.3:36794635-36794654 | MS.gene056603:intron | 20.0% |
| !!! | TTAACTCAGCTTATTATTTT+GGG | - | chr4.3:36794636-36794655 | MS.gene056603:intron | 20.0% |
| !!! | TTAACTTTTCTTAGTAATTG+AGG | + | chr4.3:36792991-36793010 | None:intergenic | 20.0% |
| ! | AAAAAGAACAAGATCAATGT+GGG | - | chr4.3:36795510-36795529 | MS.gene056603:CDS | 25.0% |
| ! | AAAGATGCTGCAAAAAAAAT+TGG | - | chr4.3:36794555-36794574 | MS.gene056603:CDS | 25.0% |
| ! | AAATGATATATCCGAAATTC+GGG | + | chr4.3:36793139-36793158 | None:intergenic | 25.0% |
| ! | AAGATGCTGCAAAAAAAATT+GGG | - | chr4.3:36794556-36794575 | MS.gene056603:CDS | 25.0% |
| ! | AATTTAGCTGAACACATAAA+TGG | - | chr4.3:36792002-36792021 | MS.gene056603:CDS | 25.0% |
| ! | ACACACTGCATAAAAAAAAA+GGG | + | chr4.3:36793183-36793202 | None:intergenic | 25.0% |
| ! | AGAAAAATCAAAGTATATGG+TGG | + | chr4.3:36792717-36792736 | None:intergenic | 25.0% |
| ! | ATTGCGATTAAATCAAACAA+AGG | - | chr4.3:36792876-36792895 | MS.gene056603:intron | 25.0% |
| ! | CCAATTTCTGTCATAAAAAA+TGG | + | chr4.3:36792029-36792048 | None:intergenic | 25.0% |
| ! | CGATATTTGATTACAAAGTT+TGG | - | chr4.3:36794122-36794141 | MS.gene056603:CDS | 25.0% |
| ! | GCATATTATGAGAAACAAAT+TGG | + | chr4.3:36792839-36792858 | None:intergenic | 25.0% |
| ! | TACACACTGCATAAAAAAAA+AGG | + | chr4.3:36793184-36793203 | None:intergenic | 25.0% |
| ! | TGAAACATATGCTTCTTAAA+TGG | + | chr4.3:36794010-36794029 | None:intergenic | 25.0% |
| ! | TGGTGAAAATGTATATAAGT+TGG | + | chr4.3:36794961-36794980 | None:intergenic | 25.0% |
| ! | TTCTCAATATGAGTTTCAAA+AGG | - | chr4.3:36793785-36793804 | MS.gene056603:intron | 25.0% |
| ! | TTTATATGTTTACTTAGAGC+AGG | + | chr4.3:36794757-36794776 | None:intergenic | 25.0% |
| ! | TTTCATTAGAACTTGTCATA+TGG | + | chr4.3:36793359-36793378 | None:intergenic | 25.0% |
| !! | AAATGTGCTATTACAAGAAA+TGG | - | chr4.3:36792091-36792110 | MS.gene056603:CDS | 25.0% |
| !! | AGCTTTTGATCTAACAAATA+TGG | + | chr4.3:36792359-36792378 | None:intergenic | 25.0% |
| !! | CTGTTATCACTGAAATTTTA+GGG | - | chr4.3:36794188-36794207 | MS.gene056603:CDS | 25.0% |
| !! | TCTGTTATCACTGAAATTTT+AGG | - | chr4.3:36794187-36794206 | MS.gene056603:CDS | 25.0% |
| !! | TTTTCTGCAGAAATGAAAAT+GGG | - | chr4.3:36792413-36792432 | MS.gene056603:CDS | 25.0% |
| !!! | CCATTTTTTATGACAGAAAT+TGG | - | chr4.3:36792026-36792045 | MS.gene056603:CDS | 25.0% |
| !!! | CTGATTAAGTTTTTTTCGTA+TGG | + | chr4.3:36794094-36794113 | None:intergenic | 25.0% |
| !!! | CTTGATTTCCACTATTTTTT+AGG | + | chr4.3:36793911-36793930 | None:intergenic | 25.0% |
| !!! | TCTTTTTCAATGATTGAACT+TGG | - | chr4.3:36795572-36795591 | MS.gene056603:CDS | 25.0% |
| !!! | TTTCAAGTTATTGTGTATCA+TGG | - | chr4.3:36794025-36794044 | MS.gene056603:CDS | 25.0% |
| !!! | TTTTTTATGACAGAAATTGG+TGG | - | chr4.3:36792029-36792048 | MS.gene056603:CDS | 25.0% |
| AAATCAAACAAAGGCTACTT+TGG | - | chr4.3:36792885-36792904 | MS.gene056603:intron | 30.0% | |
| AAGACACAAACGATTGATAA+CGG | - | chr4.3:36794784-36794803 | MS.gene056603:intron | 30.0% | |
| ACAATTTGTCAGATACTATG+AGG | - | chr4.3:36793706-36793725 | MS.gene056603:intron | 30.0% | |
| ACTACAAATGTTAAAAGGCA+TGG | + | chr4.3:36794422-36794441 | None:intergenic | 30.0% | |
| AGATGCTGCAAAAAAAATTG+GGG | - | chr4.3:36794557-36794576 | MS.gene056603:CDS | 30.0% | |
| ATAGCGAATTAAGTGTGATA+TGG | + | chr4.3:36794312-36794331 | None:intergenic | 30.0% | |
| ATCAATGATAAAATGGTAGG+AGG | - | chr4.3:36793414-36793433 | MS.gene056603:intron | 30.0% | |
| ATCACACTTAATTCGCTATA+GGG | - | chr4.3:36794313-36794332 | MS.gene056603:CDS | 30.0% | |
| ATCCAAAAAGTCTTACCATT+TGG | - | chr4.3:36794916-36794935 | MS.gene056603:intron | 30.0% | |
| ATGATAGTAACCAACATTAG+AGG | + | chr4.3:36792495-36792514 | None:intergenic | 30.0% | |
| ATTCCATGTTGTTATAGTGA+AGG | - | chr4.3:36793294-36793313 | MS.gene056603:CDS | 30.0% | |
| CTTTCATCATTTGCATATGA+TGG | - | chr4.3:36791975-36791994 | MS.gene056603:CDS | 30.0% | |
| GAAAAAGAACAAGATCAATG+TGG | - | chr4.3:36795509-36795528 | MS.gene056603:CDS | 30.0% | |
| GAAAATATCATGAACAACCA+AGG | + | chr4.3:36794996-36795015 | None:intergenic | 30.0% | |
| GAAACGAACCTAAAAAATAG+TGG | - | chr4.3:36793900-36793919 | MS.gene056603:CDS | 30.0% | |
| GAAATTGGTGGAAATTACAA+TGG | - | chr4.3:36792041-36792060 | MS.gene056603:CDS | 30.0% | |
| GTATTGAAGATTCAACAACA+TGG | - | chr4.3:36795432-36795451 | MS.gene056603:CDS | 30.0% | |
| GTCGATAGTGAATCAAAATT+CGG | - | chr4.3:36795749-36795768 | MS.gene056603:CDS | 30.0% | |
| TATCACACTTAATTCGCTAT+AGG | - | chr4.3:36794312-36794331 | MS.gene056603:CDS | 30.0% | |
| TATTATGCGTACCAATTTGT+TGG | + | chr4.3:36795298-36795317 | None:intergenic | 30.0% | |
| TCAGAGTTCATATCAGATAT+AGG | + | chr4.3:36792581-36792600 | None:intergenic | 30.0% | |
| TCCATTCAATCAAATTATGG+TGG | - | chr4.3:36792961-36792980 | MS.gene056603:intron | 30.0% | |
| TGATATCAAAATCACCTAGT+TGG | - | chr4.3:36792207-36792226 | MS.gene056603:CDS | 30.0% | |
| TGCAACTCTTAAACTTATGA+TGG | + | chr4.3:36794709-36794728 | None:intergenic | 30.0% | |
| TGTTGTTATAGTGAAGGAAA+AGG | - | chr4.3:36793300-36793319 | MS.gene056603:CDS | 30.0% | |
| TTCAAGAACATAATCTACAG+AGG | + | chr4.3:36795492-36795511 | None:intergenic | 30.0% | |
| TTCAATGATTGAACTTGGTT+TGG | - | chr4.3:36795577-36795596 | MS.gene056603:CDS | 30.0% | |
| TTCTTCCGATCAATATGATA+GGG | - | chr4.3:36793658-36793677 | MS.gene056603:intron | 30.0% | |
| TTTCAAAAGGAAAATGTCTC+AGG | - | chr4.3:36793798-36793817 | MS.gene056603:intron | 30.0% | |
| TTTCCTTCACTATAACAACA+TGG | + | chr4.3:36793300-36793319 | None:intergenic | 30.0% | |
| TTTCTTCCGATCAATATGAT+AGG | - | chr4.3:36793657-36793676 | MS.gene056603:intron | 30.0% | |
| ! | AACATGTCATCTGAAGTTAA+TGG | + | chr4.3:36791864-36791883 | None:intergenic | 30.0% |
| ! | AATAGTAGTTTGCATGATGT+TGG | - | chr4.3:36795539-36795558 | MS.gene056603:CDS | 30.0% |
| ! | ATTTTCTGATTCCCGAATTT+CGG | - | chr4.3:36793125-36793144 | MS.gene056603:intron | 30.0% |
| ! | CACATTTTCATCATAACTAG+TGG | + | chr4.3:36792078-36792097 | None:intergenic | 30.0% |
| ! | CTTTTCATTCCACTATCAAA+TGG | + | chr4.3:36791840-36791859 | None:intergenic | 30.0% |
| ! | CTTTTTGGATATGTTGAGTA+TGG | + | chr4.3:36794906-36794925 | None:intergenic | 30.0% |
| ! | GTTTTCTGCAGAAATGAAAA+TGG | - | chr4.3:36792412-36792431 | MS.gene056603:CDS | 30.0% |
| ! | TAATCTACAGAGGTTTGTTT+AGG | + | chr4.3:36795482-36795501 | None:intergenic | 30.0% |
| ! | TTTTTCTTATAGGCAACAAG+TGG | - | chr4.3:36794444-36794463 | MS.gene056603:CDS | 30.0% |
| !! | TCTTGTTTCTAATTCATGTG+AGG | - | chr4.3:36795373-36795392 | MS.gene056603:CDS | 30.0% |
| !!! | AAATTTTAGGGTATACAGGA+TGG | - | chr4.3:36794200-36794219 | MS.gene056603:CDS | 30.0% |
| !!! | ACTGAAATTTTAGGGTATAC+AGG | - | chr4.3:36794196-36794215 | MS.gene056603:CDS | 30.0% |
| !!! | AGGTTTTTTTCCTATGTCTA+GGG | - | chr4.3:36793818-36793837 | MS.gene056603:intron | 30.0% |
| !!! | ATGGTTTACTTTTTTGAACC+AGG | + | chr4.3:36794075-36794094 | None:intergenic | 30.0% |
| !!! | CTTATTATTTTGGGTTGTGT+TGG | - | chr4.3:36794645-36794664 | MS.gene056603:intron | 30.0% |
| !!! | TGGTTTACTTTTTTGAACCA+GGG | + | chr4.3:36794074-36794093 | None:intergenic | 30.0% |
| AACATAAGAAGCGGTGAAAT+AGG | + | chr4.3:36792746-36792765 | None:intergenic | 35.0% | |
| AACATCATAAGCCTTCACAT+CGG | + | chr4.3:36793529-36793548 | None:intergenic | 35.0% | |
| AACCAAGGATGTTATGAACT+TGG | + | chr4.3:36794981-36795000 | None:intergenic | 35.0% | |
| AAGAGAATATGCAGACAACA+TGG | - | chr4.3:36795125-36795144 | MS.gene056603:intron | 35.0% | |
| AAGATTCAACAACATGGCTT+TGG | - | chr4.3:36795438-36795457 | MS.gene056603:CDS | 35.0% | |
| ACAAGAATTAACTAGGTGAG+AGG | + | chr4.3:36795035-36795054 | None:intergenic | 35.0% | |
| ACTTGAACTTGTCACTACAA+AGG | - | chr4.3:36792619-36792638 | MS.gene056603:CDS | 35.0% | |
| AGATTTGAAGGAATGTGTAG+AGG | - | chr4.3:36795940-36795959 | MS.gene056603:CDS | 35.0% | |
| AGGAATACTAGCACAAGTTT+GGG | - | chr4.3:36792286-36792305 | MS.gene056603:CDS | 35.0% | |
| AGGTCATCACCATACTTTAT+AGG | + | chr4.3:36792314-36792333 | None:intergenic | 35.0% | |
| AGTTGAAAACAACCTACAGA+TGG | + | chr4.3:36795821-36795840 | None:intergenic | 35.0% | |
| ATGGTTGATCACTTGTAGTT+AGG | + | chr4.3:36792340-36792359 | None:intergenic | 35.0% | |
| ATTCTTCTATACCGATGTGA+AGG | - | chr4.3:36793515-36793534 | MS.gene056603:intron | 35.0% | |
| CAAGAATTAACTAGGTGAGA+GGG | + | chr4.3:36795034-36795053 | None:intergenic | 35.0% | |
| CATATTCTCTTCAGAGTTGT+TGG | + | chr4.3:36795116-36795135 | None:intergenic | 35.0% | |
| CATCATCAAGATACTTGAGT+TGG | + | chr4.3:36795889-36795908 | None:intergenic | 35.0% | |
| GAACTCCCTATCATATTGAT+CGG | + | chr4.3:36793666-36793685 | None:intergenic | 35.0% | |
| GAATCTTCAATACAGTCAAC+AGG | + | chr4.3:36795425-36795444 | None:intergenic | 35.0% | |
| GACAACATGGAATTTCAAGA+TGG | - | chr4.3:36795138-36795157 | MS.gene056603:CDS | 35.0% | |
| GAGCGAATACGAATTAAAGA+AGG | - | chr4.3:36793333-36793352 | MS.gene056603:CDS | 35.0% | |
| GAGTGCTTTATCCTTCTTTA+AGG | - | chr4.3:36792250-36792269 | MS.gene056603:CDS | 35.0% | |
| GATGCTGCAAAAAAAATTGG+GGG | - | chr4.3:36794558-36794577 | MS.gene056603:CDS | 35.0% | |
| GCCACCATAATTTGATTGAA+TGG | + | chr4.3:36792965-36792984 | None:intergenic | 35.0% | |
| GCTCTTATTCACAGATAAGT+GGG | + | chr4.3:36794884-36794903 | None:intergenic | 35.0% | |
| GGAGAATTTGTAAGAGTTTG+AGG | - | chr4.3:36793727-36793746 | MS.gene056603:intron | 35.0% | |
| GGTTCAATCATCCAACAAAT+TGG | - | chr4.3:36795284-36795303 | MS.gene056603:CDS | 35.0% | |
| TAATTCATGTGAGGCAGAAT+TGG | - | chr4.3:36795382-36795401 | MS.gene056603:CDS | 35.0% | |
| TCACACTTAATTCGCTATAG+GGG | - | chr4.3:36794314-36794333 | MS.gene056603:CDS | 35.0% | |
| TGACCAACAGAATGAAATCT+GGG | - | chr4.3:36794272-36794291 | MS.gene056603:CDS | 35.0% | |
| TGGTGGAAATTACAATGGTA+TGG | - | chr4.3:36792046-36792065 | MS.gene056603:CDS | 35.0% | |
| TTCAATACAGTCAACAGGAA+TGG | + | chr4.3:36795420-36795439 | None:intergenic | 35.0% | |
| TTCACATCGGTATAGAAGAA+TGG | + | chr4.3:36793516-36793535 | None:intergenic | 35.0% | |
| TTGTTAGATCAAAAGCTTGC+AGG | - | chr4.3:36792362-36792381 | MS.gene056603:CDS | 35.0% | |
| TTTCAGAAGCTGAACTAAGA+GGG | - | chr4.3:36793754-36793773 | MS.gene056603:intron | 35.0% | |
| ! | AAAGGCTACTTTGGCAAAAT+TGG | - | chr4.3:36792894-36792913 | MS.gene056603:intron | 35.0% |
| ! | AATTTAGAGTTGACCCATTG+AGG | - | chr4.3:36794669-36794688 | MS.gene056603:intron | 35.0% |
| ! | ACTTTATTTATCTTGCGCGA+TGG | + | chr4.3:36795164-36795183 | None:intergenic | 35.0% |
| ! | ATGAACTTTGATAGCTATGC+TGG | - | chr4.3:36791903-36791922 | MS.gene056603:CDS | 35.0% |
| ! | ATGACATCTGGAATAAATCC+TGG | + | chr4.3:36793875-36793894 | None:intergenic | 35.0% |
| ! | ATGTTCTGAACATCATCTTG+AGG | - | chr4.3:36793449-36793468 | MS.gene056603:intron | 35.0% |
| ! | ATTTAGAGTTGACCCATTGA+GGG | - | chr4.3:36794670-36794689 | MS.gene056603:intron | 35.0% |
| ! | ATTTGTTTCTCATGCACTTC+AGG | - | chr4.3:36792670-36792689 | MS.gene056603:CDS | 35.0% |
| ! | GTCCAAATGGTAAGACTTTT+TGG | + | chr4.3:36794921-36794940 | None:intergenic | 35.0% |
| ! | GTTCTCCAACAATACTTTTC+TGG | - | chr4.3:36794525-36794544 | MS.gene056603:CDS | 35.0% |
| !! | ATCTTGATGATGAAGAGGAA+TGG | - | chr4.3:36795897-36795916 | MS.gene056603:CDS | 35.0% |
| !! | ATTGAACTTGGTTTGGAAGA+AGG | - | chr4.3:36795584-36795603 | MS.gene056603:CDS | 35.0% |
| !! | CAAGTATCTTGATGATGAAG+AGG | - | chr4.3:36795892-36795911 | MS.gene056603:CDS | 35.0% |
| !! | GACTACCAGAAAAGTATTGT+TGG | + | chr4.3:36794533-36794552 | None:intergenic | 35.0% |
| !! | TCTTGATGATGAAGAGGAAT+GGG | - | chr4.3:36795898-36795917 | MS.gene056603:CDS | 35.0% |
| !!! | ATTTGATTTTCGAGTGCTTC+TGG | + | chr4.3:36795721-36795740 | None:intergenic | 35.0% |
| !!! | CAGGTTTTTTTCCTATGTCT+AGG | - | chr4.3:36793817-36793836 | MS.gene056603:intron | 35.0% |
| !!! | GGTTTTTTTCCTATGTCTAG+GGG | - | chr4.3:36793819-36793838 | MS.gene056603:intron | 35.0% |
| AAATCAAGCTGCTTACAGTC+AGG | - | chr4.3:36793923-36793942 | MS.gene056603:CDS | 40.0% | |
| AACAAGTGGTTCAAGAAAGC+AGG | - | chr4.3:36794458-36794477 | MS.gene056603:CDS | 40.0% | |
| ACATCTTCATCCTCCAACTT+AGG | + | chr4.3:36795353-36795372 | None:intergenic | 40.0% | |
| ACCAACAGAATGAAATCTGG+GGG | - | chr4.3:36794274-36794293 | MS.gene056603:CDS | 40.0% | |
| ACCAATATTCCTCAAAGGAG+AGG | - | chr4.3:36791796-36791815 | MS.gene056603:CDS | 40.0% | |
| ACTCCTTAGCCTAATTGCAA+CGG | + | chr4.3:36793601-36793620 | None:intergenic | 40.0% | |
| AGAACAAGATCAATGTGGGT+TGG | - | chr4.3:36795514-36795533 | MS.gene056603:CDS | 40.0% | |
| ATGGTGAATGGAAGTTCATC+AGG | - | chr4.3:36795677-36795696 | MS.gene056603:CDS | 40.0% | |
| ATTACCTGTGGAAGAAGTCT+TGG | + | chr4.3:36793107-36793126 | None:intergenic | 40.0% | |
| CAACTCCTGGTTTACTGATA+AGG | + | chr4.3:36794244-36794263 | None:intergenic | 40.0% | |
| CAATATTCCTCAAAGGAGAG+GGG | - | chr4.3:36791798-36791817 | MS.gene056603:CDS | 40.0% | |
| CACCAAGTTCATAACATCCT+TGG | - | chr4.3:36794976-36794995 | MS.gene056603:intron | 40.0% | |
| CACTATCAAATGGTGTCCAA+AGG | + | chr4.3:36791830-36791849 | None:intergenic | 40.0% | |
| CCAATATTCCTCAAAGGAGA+GGG | - | chr4.3:36791797-36791816 | MS.gene056603:CDS | 40.0% | |
| CTTTGGACACCATTTGATAG+TGG | - | chr4.3:36791828-36791847 | MS.gene056603:CDS | 40.0% | |
| GAAAACCTCAGTACCTAAGT+TGG | - | chr4.3:36795337-36795356 | MS.gene056603:CDS | 40.0% | |
| GACCAACAGAATGAAATCTG+GGG | - | chr4.3:36794273-36794292 | MS.gene056603:CDS | 40.0% | |
| GAGGAATACTAGCACAAGTT+TGG | - | chr4.3:36792285-36792304 | MS.gene056603:CDS | 40.0% | |
| GATCACTTGTAGTTAGGATG+AGG | + | chr4.3:36792334-36792353 | None:intergenic | 40.0% | |
| GGAAGACCAATATTCCTCAA+AGG | - | chr4.3:36791791-36791810 | MS.gene056603:CDS | 40.0% | |
| GGCTCTTATTCACAGATAAG+TGG | + | chr4.3:36794885-36794904 | None:intergenic | 40.0% | |
| GGGAATCAGAAAATTACCTG+TGG | + | chr4.3:36793119-36793138 | None:intergenic | 40.0% | |
| GGTGAATGACTCAGATTTGA+AGG | - | chr4.3:36795928-36795947 | MS.gene056603:CDS | 40.0% | |
| GTGACCAACAGAATGAAATC+TGG | - | chr4.3:36794271-36794290 | MS.gene056603:CDS | 40.0% | |
| GTTTCAGAAGCTGAACTAAG+AGG | - | chr4.3:36793753-36793772 | MS.gene056603:intron | 40.0% | |
| GTTTGGGCACCTATAAAGTA+TGG | - | chr4.3:36792302-36792321 | MS.gene056603:CDS | 40.0% | |
| TCGTTTCGTTGAATGACATC+TGG | + | chr4.3:36793887-36793906 | None:intergenic | 40.0% | |
| TCTCAGATAGCGTTTAGTAG+CGG | - | chr4.3:36793846-36793865 | MS.gene056603:intron | 40.0% | |
| TCTGAACATCATCTTGAGGA+AGG | - | chr4.3:36793453-36793472 | MS.gene056603:intron | 40.0% | |
| TGCTTCCTTATCAGTAAACC+AGG | - | chr4.3:36794236-36794255 | MS.gene056603:CDS | 40.0% | |
| TGGTTTACTGATAAGGAAGC+AGG | + | chr4.3:36794237-36794256 | None:intergenic | 40.0% | |
| TTAACTCGCATGTTCCTGAA+TGG | - | chr4.3:36792468-36792487 | MS.gene056603:CDS | 40.0% | |
| TTGCTCGTTCGCAATATACA+TGG | - | chr4.3:36795995-36796014 | MS.gene056603:CDS | 40.0% | |
| ! | AAAATGGGATCTTGTTGTCC+TGG | - | chr4.3:36792428-36792447 | MS.gene056603:CDS | 40.0% |
| ! | ACCAGCTGATTCCTTAAAGA+AGG | + | chr4.3:36792264-36792283 | None:intergenic | 40.0% |
| ! | ACTTTGATAGCTATGCTGGT+TGG | - | chr4.3:36791907-36791926 | MS.gene056603:CDS | 40.0% |
| ! | TCCTTCTTTAAGGAATCAGC+TGG | - | chr4.3:36792260-36792279 | MS.gene056603:CDS | 40.0% |
| ! | TTCAAGTTCGATCCATCTGT+AGG | - | chr4.3:36795806-36795825 | MS.gene056603:CDS | 40.0% |
| ! | TTCTTTAAGGAATCAGCTGG+TGG | - | chr4.3:36792263-36792282 | MS.gene056603:CDS | 40.0% |
| !! | CTTGGTTTGGAAGAAGGAAA+AGG | - | chr4.3:36795590-36795609 | MS.gene056603:CDS | 40.0% |
| !!! | GTAGAGGTTTTGAGTGACAT+TGG | - | chr4.3:36795956-36795975 | MS.gene056603:CDS | 40.0% |
| !!! | TAGGTACTGAGGTTTTCTCA+GGG | + | chr4.3:36795334-36795353 | None:intergenic | 40.0% |
| !!! | TTAGGTACTGAGGTTTTCTC+AGG | + | chr4.3:36795335-36795354 | None:intergenic | 40.0% |
| AAATTTGACCCTCACACTGG+TGG | - | chr4.3:36795248-36795267 | MS.gene056603:CDS | 45.0% | |
| AACAGAATGAAATCTGGGGG+AGG | - | chr4.3:36794277-36794296 | MS.gene056603:CDS | 45.0% | |
| ACAGAATGAAATCTGGGGGA+GGG | - | chr4.3:36794278-36794297 | MS.gene056603:CDS | 45.0% | |
| AGAACTCTGAACATCAACCC+TGG | - | chr4.3:36794054-36794073 | MS.gene056603:CDS | 45.0% | |
| CAACAAATCCACCAGTGTGA+GGG | + | chr4.3:36795259-36795278 | None:intergenic | 45.0% | |
| CATCATCTTGAGGAAGGACA+AGG | - | chr4.3:36793459-36793478 | MS.gene056603:intron | 45.0% | |
| CCAACATTAGAGGTCCATTC+AGG | + | chr4.3:36792485-36792504 | None:intergenic | 45.0% | |
| CCTGAATGGACCTCTAATGT+TGG | - | chr4.3:36792482-36792501 | MS.gene056603:CDS | 45.0% | |
| CGGTCATGCTTGAAGAAGTA+GGG | + | chr4.3:36795634-36795653 | None:intergenic | 45.0% | |
| CTCGTTCGCAATATACATGG+CGG | - | chr4.3:36795998-36796017 | MS.gene056603:CDS | 45.0% | |
| CTCTCATCAAGTGACCAACT+AGG | + | chr4.3:36792224-36792243 | None:intergenic | 45.0% | |
| CTGAAATTTGACCCTCACAC+TGG | - | chr4.3:36795245-36795264 | MS.gene056603:CDS | 45.0% | |
| CTTAATTCGCTATAGGGGAG+TGG | - | chr4.3:36794319-36794338 | MS.gene056603:CDS | 45.0% | |
| GAAAGCAGGCTGAGAAAAAG+AGG | - | chr4.3:36794472-36794491 | MS.gene056603:CDS | 45.0% | |
| GAGGAAGGACAAGGTATATC+TGG | - | chr4.3:36793468-36793487 | MS.gene056603:intron | 45.0% | |
| GATTCTGTCCAAGGAGTTGA+AGG | - | chr4.3:36795218-36795237 | MS.gene056603:CDS | 45.0% | |
| GCTGAACTAAGAGGGATAGA+AGG | - | chr4.3:36793762-36793781 | MS.gene056603:intron | 45.0% | |
| GGTCACAAACTTACAACTCC+TGG | + | chr4.3:36794257-36794276 | None:intergenic | 45.0% | |
| GTCAGAGACGTAAGCACAAT+TGG | + | chr4.3:36794817-36794836 | None:intergenic | 45.0% | |
| GTTTCTCATGCACTTCAGGT+TGG | - | chr4.3:36792674-36792693 | MS.gene056603:CDS | 45.0% | |
| TCAGAACTCCTTCAACTCCT+TGG | + | chr4.3:36795229-36795248 | None:intergenic | 45.0% | |
| TCCCCCAGATTTCATTCTGT+TGG | + | chr4.3:36794278-36794297 | None:intergenic | 45.0% | |
| TCCTTGGACAGAATCAAGCA+CGG | + | chr4.3:36795213-36795232 | None:intergenic | 45.0% | |
| TCGGTCATGCTTGAAGAAGT+AGG | + | chr4.3:36795635-36795654 | None:intergenic | 45.0% | |
| TGAAGAGGAATGGGTGATGT+TGG | - | chr4.3:36795907-36795926 | MS.gene056603:CDS | 45.0% | |
| TGAATGCTGCCGTTGCAATT+AGG | - | chr4.3:36793589-36793608 | MS.gene056603:intron | 45.0% | |
| TTACGCAGCGTGTGAATCTA+AGG | - | chr4.3:36793069-36793088 | MS.gene056603:intron | 45.0% | |
| TTTAAGGAATCAGCTGGTGG+AGG | - | chr4.3:36792266-36792285 | MS.gene056603:CDS | 45.0% | |
| ! | AACCTCAGTACCTAAGTTGG+AGG | - | chr4.3:36795340-36795359 | MS.gene056603:CDS | 45.0% |
| ! | AGATCATGCGATTAGTCACG+AGG | - | chr4.3:36792535-36792554 | MS.gene056603:CDS | 45.0% |
| ! | ATCCTCCAACTTAGGTACTG+AGG | + | chr4.3:36795345-36795364 | None:intergenic | 45.0% |
| ! | CCCTCTCCTTTGAGGAATAT+TGG | + | chr4.3:36791800-36791819 | None:intergenic | 45.0% |
| ! | GGAGAGTGTATGAGTCCAAA+TGG | + | chr4.3:36794934-36794953 | None:intergenic | 45.0% |
| !! | ATGGCTTTGGACAAAGACTC+AGG | - | chr4.3:36795451-36795470 | MS.gene056603:CDS | 45.0% |
| !! | GTTTACCTCTAGCACTGACA+TGG | - | chr4.3:36793271-36793290 | MS.gene056603:CDS | 45.0% |
| !! | TGAGAAAAAGAGGAGTGCTG+TGG | - | chr4.3:36794482-36794501 | MS.gene056603:CDS | 45.0% |
| !! | TTGCATGATGTTGGCTCTCA+TGG | - | chr4.3:36795548-36795567 | MS.gene056603:CDS | 45.0% |
| ACCGTGCTTGATTCTGTCCA+AGG | - | chr4.3:36795209-36795228 | MS.gene056603:CDS | 50.0% | |
| ACCTGTGGAAGAAGTCTTGG+AGG | + | chr4.3:36793104-36793123 | None:intergenic | 50.0% | |
| AGAATGAAATCTGGGGGAGG+GGG | - | chr4.3:36794280-36794299 | MS.gene056603:CDS | 50.0% | |
| CACAGATAAGTGGGCAGATG+CGG | + | chr4.3:36794875-36794894 | None:intergenic | 50.0% | |
| CAGAATGAAATCTGGGGGAG+GGG | - | chr4.3:36794279-36794298 | MS.gene056603:CDS | 50.0% | |
| CAGTCGAGGCGTGGAATAAT+TGG | + | chr4.3:36794148-36794167 | None:intergenic | 50.0% | |
| CTGCCGTTGCAATTAGGCTA+AGG | - | chr4.3:36793595-36793614 | MS.gene056603:intron | 50.0% | |
| GCAACAAATCCACCAGTGTG+AGG | + | chr4.3:36795260-36795279 | None:intergenic | 50.0% | |
| GGAATCCATGTCAGTGCTAG+AGG | + | chr4.3:36793279-36793298 | None:intergenic | 50.0% | |
| TAAACGACCTCGACACTTCG+CGG | + | chr4.3:36792391-36792410 | None:intergenic | 50.0% | |
| TCCATTCACCATTGAGCCAG+AGG | + | chr4.3:36795669-36795688 | None:intergenic | 50.0% | |
| TGAGAGTTGCCCCTAGACAT+AGG | + | chr4.3:36793831-36793850 | None:intergenic | 50.0% | |
| TTTCGCGCGTGATGAACAAG+CGG | + | chr4.3:36793561-36793580 | None:intergenic | 50.0% | |
| ! | ACCGATTCATCGAATGCCTC+TGG | - | chr4.3:36795650-36795669 | MS.gene056603:CDS | 50.0% |
| ! | AGCTATGCTGGTTGGTGCAA+TGG | - | chr4.3:36791915-36791934 | MS.gene056603:CDS | 50.0% |
| ! | ATCGAATGCCTCTGGCTCAA+TGG | - | chr4.3:36795658-36795677 | MS.gene056603:CDS | 50.0% |
| ! | TCTTGTTGTCCTGGACTTCC+TGG | - | chr4.3:36792437-36792456 | MS.gene056603:CDS | 50.0% |
| ! | TTGACCCATTGAGGGTGTGA+GGG | - | chr4.3:36794678-36794697 | MS.gene056603:intron | 50.0% |
| !! | ACTGGTGGATTTGTTGCAGG+AGG | - | chr4.3:36795263-36795282 | MS.gene056603:CDS | 50.0% |
| !! | CACACTGGTGGATTTGTTGC+AGG | - | chr4.3:36795260-36795279 | MS.gene056603:CDS | 50.0% |
| !! | GCCAGAGGCATTCGATGAAT+CGG | + | chr4.3:36795654-36795673 | None:intergenic | 50.0% |
| ACCAACCCTCACACCCTCAA+TGG | + | chr4.3:36794686-36794705 | None:intergenic | 55.0% | |
| ACTGCAGCGCTTTACAGTCG+AGG | + | chr4.3:36794162-36794181 | None:intergenic | 55.0% | |
| AGCGTTTAGTAGCGGTGACC+AGG | - | chr4.3:36793854-36793873 | MS.gene056603:intron | 55.0% | |
| AGGAGAGGGGAATCAGCCTT+TGG | - | chr4.3:36791811-36791830 | MS.gene056603:CDS | 55.0% | |
| CCAACCCTCACACCCTCAAT+GGG | + | chr4.3:36794685-36794704 | None:intergenic | 55.0% | |
| GAATGAAATCTGGGGGAGGG+GGG | - | chr4.3:36794281-36794300 | MS.gene056603:CDS | 55.0% | |
| GCCTCCAAGACTTCTTCCAC+AGG | - | chr4.3:36793100-36793119 | MS.gene056603:intron | 55.0% | |
| GCTATAGGGGAGTGGAACAG+TGG | - | chr4.3:36794327-36794346 | MS.gene056603:CDS | 55.0% | |
| TGCGAGTTAAACACGCGACC+AGG | + | chr4.3:36792458-36792477 | None:intergenic | 55.0% | |
| ! | GCCTCTGGCTCAATGGTGAA+TGG | - | chr4.3:36795665-36795684 | MS.gene056603:CDS | 55.0% |
| ! | GCGATTAGTCACGAGGTTCG+AGG | - | chr4.3:36792542-36792561 | MS.gene056603:CDS | 55.0% |
| ! | GCTGATTCCCCTCTCCTTTG+AGG | + | chr4.3:36791808-36791827 | None:intergenic | 55.0% |
| ! | GTTGACCCATTGAGGGTGTG+AGG | - | chr4.3:36794677-36794696 | MS.gene056603:intron | 55.0% |
| AACACGCGACCAGGAAGTCC+AGG | + | chr4.3:36792449-36792468 | None:intergenic | 60.0% | |
| AGCGCTTTACAGTCGAGGCG+TGG | + | chr4.3:36794157-36794176 | None:intergenic | 60.0% | |
| ! | CCCATTGAGGGTGTGAGGGT+TGG | - | chr4.3:36794682-36794701 | MS.gene056603:intron | 60.0% |
| !! | CAGGTTACCGCGAAGTGTCG+AGG | - | chr4.3:36792381-36792400 | MS.gene056603:CDS | 60.0% |
| GTGGGCAGATGCGGAGCAAG+TGG | + | chr4.3:36794866-36794885 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36791789 | 36796033 | 36791789 | ID=MS.gene056603 |
| chr4.3 | mRNA | 36791789 | 36796033 | 36791789 | ID=MS.gene056603.t1;Parent=MS.gene056603 |
| chr4.3 | exon | 36795131 | 36796033 | 36795131 | ID=MS.gene056603.t1.exon1;Parent=MS.gene056603.t1 |
| chr4.3 | CDS | 36795131 | 36796033 | 36795131 | ID=cds.MS.gene056603.t1;Parent=MS.gene056603.t1 |
| chr4.3 | exon | 36794701 | 36794745 | 36794701 | ID=MS.gene056603.t1.exon2;Parent=MS.gene056603.t1 |
| chr4.3 | CDS | 36794701 | 36794745 | 36794701 | ID=cds.MS.gene056603.t1;Parent=MS.gene056603.t1 |
| chr4.3 | exon | 36793878 | 36794624 | 36793878 | ID=MS.gene056603.t1.exon3;Parent=MS.gene056603.t1 |
| chr4.3 | CDS | 36793878 | 36794624 | 36793878 | ID=cds.MS.gene056603.t1;Parent=MS.gene056603.t1 |
| chr4.3 | exon | 36793243 | 36793366 | 36793243 | ID=MS.gene056603.t1.exon4;Parent=MS.gene056603.t1 |
| chr4.3 | CDS | 36793243 | 36793366 | 36793243 | ID=cds.MS.gene056603.t1;Parent=MS.gene056603.t1 |
| chr4.3 | exon | 36791789 | 36792714 | 36791789 | ID=MS.gene056603.t1.exon5;Parent=MS.gene056603.t1 |
| chr4.3 | CDS | 36791789 | 36792714 | 36791789 | ID=cds.MS.gene056603.t1;Parent=MS.gene056603.t1 |
| Gene Sequence |
| Protein sequence |
