AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056401

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056401.t1 MTR_4g068000 96.405 918 26 3 1 917 1 912 0.0 1835
MS.gene056401.t1 MTR_2g099350 59.541 959 327 17 1 911 1 946 0.0 1067
MS.gene056401.t1 MTR_0022s0430 36.717 798 402 20 152 911 112 844 9.15e-138 432
MS.gene056401.t1 MTR_0022s0430 36.650 794 400 20 156 911 1 729 5.39e-137 427
MS.gene056401.t1 MTR_3g115400 39.744 546 286 12 151 665 138 671 1.44e-116 378
MS.gene056401.t1 MTR_1g100970 40.672 536 276 14 152 659 44 565 5.27e-113 368
MS.gene056401.t1 MTR_1g100970 44.444 81 44 1 832 911 806 886 3.05e-15 80.9
MS.gene056401.t1 MTR_1g100970 40.530 528 288 10 152 659 124 645 2.89e-112 368
MS.gene056401.t1 MTR_1g100970 44.444 81 44 1 832 911 886 966 3.42e-15 80.9
MS.gene056401.t1 MTR_1g100970 40.217 368 184 10 316 659 2 357 2.75e-70 247
MS.gene056401.t1 MTR_1g100970 44.444 81 44 1 832 911 598 678 2.00e-15 81.3
MS.gene056401.t1 MTR_5g099060 33.884 363 196 11 148 502 122 448 6.09e-46 179
MS.gene056401.t1 MTR_5g099060 67.778 90 25 1 578 667 607 692 3.68e-31 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 50.158 951 399 22 1 911 1 916 0.0 791
MS.gene056401.t1 AT2G43500 49.481 964 399 23 1 911 1 929 0.0 782
MS.gene056401.t1 AT2G43500 49.481 964 399 23 1 911 1 929 0.0 782
MS.gene056401.t1 AT2G43500 49.378 964 400 23 1 911 1 929 0.0 779
MS.gene056401.t1 AT3G59580 49.729 923 365 24 18 911 23 875 0.0 747
MS.gene056401.t1 AT3G59580 49.729 923 365 24 18 911 23 875 0.0 747
MS.gene056401.t1 AT3G59580 49.729 923 365 24 18 911 23 875 0.0 747
MS.gene056401.t1 AT1G64530 41.544 544 283 12 147 658 87 627 2.18e-119 384
MS.gene056401.t1 AT1G64530 45.679 81 42 2 832 911 744 823 1.81e-13 75.1
MS.gene056401.t1 AT1G20640 41.486 552 267 12 151 667 104 634 1.74e-118 381
MS.gene056401.t1 AT1G20640 41.486 552 267 12 151 667 104 634 1.74e-118 381
MS.gene056401.t1 AT1G20640 41.486 552 267 12 151 667 104 634 1.74e-118 381
MS.gene056401.t1 AT1G76350 41.887 530 266 12 150 654 104 616 2.68e-118 380
MS.gene056401.t1 AT1G76350 41.887 530 266 12 150 654 104 616 2.68e-118 380
MS.gene056401.t1 AT1G76350 41.887 530 266 12 150 654 104 616 2.68e-118 380
MS.gene056401.t1 AT1G76350 41.887 530 266 12 150 654 104 616 2.68e-118 380
MS.gene056401.t1 AT4G24020 39.685 572 299 14 117 658 107 662 6.66e-111 364
MS.gene056401.t1 AT4G24020 45.000 80 44 0 832 911 866 945 1.33e-16 85.5
MS.gene056401.t1 AT1G64530 42.702 459 229 12 224 658 24 472 1.75e-104 340
MS.gene056401.t1 AT1G64530 53.125 64 29 1 832 894 589 652 1.74e-13 75.1
MS.gene056401.t1 AT2G17150 37.329 584 289 14 145 665 117 686 3.04e-103 342
MS.gene056401.t1 AT2G17150 43.421 76 42 1 832 906 814 889 6.98e-12 70.1
MS.gene056401.t1 AT2G17150 37.329 584 289 14 145 665 117 686 3.04e-103 342
MS.gene056401.t1 AT2G17150 43.421 76 42 1 832 906 814 889 6.98e-12 70.1
MS.gene056401.t1 AT4G35270 35.452 598 292 19 145 665 146 726 2.85e-93 316
MS.gene056401.t1 AT4G35270 38.462 78 47 1 832 908 865 942 8.11e-11 66.6
MS.gene056401.t1 AT4G35270 35.452 598 292 19 145 665 146 726 2.85e-93 316
MS.gene056401.t1 AT4G35270 38.462 78 47 1 832 908 865 942 8.11e-11 66.6
MS.gene056401.t1 AT4G35270 35.452 598 292 19 145 665 146 726 2.85e-93 316
MS.gene056401.t1 AT4G35270 38.462 78 47 1 832 908 865 942 8.11e-11 66.6
MS.gene056401.t1 AT4G35270 35.452 598 292 19 145 665 146 726 2.85e-93 316
MS.gene056401.t1 AT4G35270 38.462 78 47 1 832 908 865 942 8.11e-11 66.6
MS.gene056401.t1 AT4G38340 36.207 522 261 14 147 658 39 498 1.34e-84 286
MS.gene056401.t1 AT4G38340 35.577 520 263 13 147 656 110 567 8.45e-84 286
MS.gene056401.t1 AT2G17150 33.712 528 273 13 145 609 117 630 7.56e-75 259
MS.gene056401.t1 AT2G17150 33.712 528 273 13 145 609 117 630 7.56e-75 259
MS.gene056401.t1 AT2G17150 33.586 527 272 14 145 609 117 627 1.10e-73 255
MS.gene056401.t1 AT4G24020 40.102 394 202 9 286 658 2 382 3.10e-72 252
MS.gene056401.t1 AT4G24020 45.000 80 44 0 832 911 586 665 1.04e-16 85.5
MS.gene056401.t1 AT2G17150 36.256 422 198 10 303 665 22 431 9.58e-65 230
MS.gene056401.t1 AT2G17150 43.421 76 42 1 832 906 559 634 4.50e-12 70.5

Find 152 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGCTTTATCCTTCTTTA+AGG 0.159389 4.1:-33861448 MS.gene056401:CDS
TGCGATTAGTCACGAGGTTC+GGG 0.268648 4.1:-33861157 MS.gene056401:CDS
TCTAATTCTTTGTCAAAATT+AGG 0.287200 4.1:+33861051 None:intergenic
ATTTGTTTCTCATGCACTTC+AGG 0.297246 4.1:-33861028 MS.gene056401:intron
TGAATGCTGCCGTTGCAATT+AGG 0.297724 4.1:-33860405 MS.gene056401:CDS
AAAAGATTTAAGTTACAAAA+TGG 0.299236 4.1:-33858136 MS.gene056401:CDS
CCCTCTCCTTTGAGGAATAT+TGG 0.300677 4.1:+33861910 None:intergenic
TCTTGTTGTCCTGGACTTCC+TGG 0.301260 4.1:-33861261 MS.gene056401:CDS
CACACTGGTGGATTTGTTGC+AGG 0.303903 4.1:-33858733 MS.gene056401:CDS
TTGCTATATCAATGATAAAA+TGG 0.306339 4.1:-33860587 MS.gene056401:CDS
CATATTCTCTTCAGAGTTGT+TGG 0.308883 4.1:+33858880 None:intergenic
AATTTAGATTCACAACAAAA+TGG 0.321611 4.1:-33861537 MS.gene056401:CDS
TTTCTTCCGATCAATATGAT+AGG 0.325828 4.1:-33860337 MS.gene056401:CDS
AATTTAGCTGAACACATAAA+TGG 0.329071 4.1:-33861696 MS.gene056401:CDS
GGAGAATTTGTAAGAGTTTG+AGG 0.335074 4.1:-33860267 MS.gene056401:CDS
TTTCGCAGCGTGTGAATCTA+AGG 0.337305 4.1:-33860923 MS.gene056401:intron
GAGGAATACTAGCACAAGTT+TGG 0.342017 4.1:-33861413 MS.gene056401:CDS
AAATGTGCTATTACAAGAAA+TGG 0.345785 4.1:-33861607 MS.gene056401:CDS
TTCAATGATTGAACTTGGTT+TGG 0.346200 4.1:-33858416 MS.gene056401:CDS
TAATTCATGTGAGGCAGAAT+TGG 0.346673 4.1:-33858611 MS.gene056401:CDS
TAATCTACAGAGGTTTGTTT+AGG 0.349811 4.1:+33858514 None:intergenic
AACATGTCATCTGAAGTTAA+TGG 0.354035 4.1:+33861846 None:intergenic
ATGCGATTAGTCACGAGGTT+CGG 0.358260 4.1:-33861158 MS.gene056401:CDS
GAGGAAGGACAAGGTATATC+TGG 0.362717 4.1:-33860526 MS.gene056401:CDS
TTGTTAGATCAAAAGCTTGC+AGG 0.364988 4.1:-33861336 MS.gene056401:CDS
AGGTCATCACCATACTTTAT+AGG 0.370674 4.1:+33861387 None:intergenic
ATGGTTGATCACTTGTAGTT+AGG 0.371200 4.1:+33861361 None:intergenic
GGTTCAATCATCCAACAAAT+TGG 0.376103 4.1:-33858709 MS.gene056401:CDS
TATTATGCGTACCAATTTGT+TGG 0.379422 4.1:+33858698 None:intergenic
CCAACATTAGAGGTCCATTC+AGG 0.380914 4.1:+33861216 None:intergenic
AAGATTCAACAACATGGCTT+TGG 0.385657 4.1:-33858555 MS.gene056401:CDS
ATTGAACTTGGTTTGGAAGA+AGG 0.389900 4.1:-33858409 MS.gene056401:CDS
TTTCAAAAGGAAAATGTCTC+AGG 0.395471 4.1:-33860196 MS.gene056401:CDS
TCGTTTCGTTGAATGACATC+TGG 0.396728 4.1:+33860110 None:intergenic
GCTGATTCCCCTCTCCTTTG+AGG 0.402348 4.1:+33861902 None:intergenic
GCTGAACTAAGAGGGATAGA+AGG 0.402797 4.1:-33860232 MS.gene056401:CDS
TTTCATTAGAACTTGTCATA+TGG 0.407153 4.1:+33860638 None:intergenic
TCAGAGTTCATATCAGATAT+AGG 0.407580 4.1:+33861120 None:intergenic
ATGATAGTAGCCAACATTAG+AGG 0.411624 4.1:+33861206 None:intergenic
GTTTGGGCACCTATAAAGTA+TGG 0.426412 4.1:-33861396 MS.gene056401:CDS
ATGAACTTTGATAGCTATGC+TGG 0.431040 4.1:-33861804 MS.gene056401:CDS
ATGGTGAATGGAAGTTCATC+AGG 0.440811 4.1:-33858316 MS.gene056401:CDS
GATTCTGTCCAAGGAGTTGA+AGG 0.441649 4.1:-33858775 MS.gene056401:CDS
TCAGAACTCCTTCAACTCCT+TGG 0.443312 4.1:+33858767 None:intergenic
GACTACCAGAAAAGTATTGT+TGG 0.443666 4.1:+33859463 None:intergenic
TTGCATGATGTTGGCTCTCA+TGG 0.443915 4.1:-33858445 MS.gene056401:CDS
GTCGATAGTGAATCAAAATT+CGG 0.451171 4.1:-33858244 MS.gene056401:CDS
ATCGAATGCCTCTGGCTCAA+TGG 0.458272 4.1:-33858335 MS.gene056401:CDS
TAAACGACCTCGACACTTCG+CGG 0.462374 4.1:+33861310 None:intergenic
ACATCTTCATCCTCCAACTT+AGG 0.466143 4.1:+33858643 None:intergenic
CTTTGGACACCATTTGATAG+TGG 0.468888 4.1:-33861879 MS.gene056401:CDS
TTAACTCGCATGTTCCTGAA+TGG 0.472060 4.1:-33861230 MS.gene056401:CDS
AGGAATACTAGCACAAGTTT+GGG 0.473111 4.1:-33861412 MS.gene056401:CDS
GAATCTTCAATACAGTCAAC+AGG 0.473305 4.1:+33858571 None:intergenic
GCCTCTGGCTCAATGGTGAA+TGG 0.475824 4.1:-33858328 MS.gene056401:CDS
ACCGATTCATCGAATGCCTC+TGG 0.477307 4.1:-33858343 MS.gene056401:CDS
TGGTGGAAATTACAATGGTA+TGG 0.477511 4.1:-33861652 MS.gene056401:CDS
AGGAGAGGGGAATCAGCCTT+TGG 0.478927 4.1:-33861896 MS.gene056401:CDS
AATAGTAGTTTGCATGATGT+TGG 0.490581 4.1:-33858454 MS.gene056401:CDS
TTCTCAATATGAGTTTCAAA+AGG 0.490680 4.1:-33860209 MS.gene056401:CDS
GCCAGAGGCATTCGATGAAT+CGG 0.493281 4.1:+33858342 None:intergenic
AGCTATGCTGGTTGGTGCAA+TGG 0.494942 4.1:-33861792 MS.gene056401:CDS
TTCTTCCGATCAATATGATA+GGG 0.494971 4.1:-33860336 MS.gene056401:CDS
GTTTCAGAAGCTGAACTAAG+AGG 0.495063 4.1:-33860241 MS.gene056401:CDS
GAAAACCTCAGTACCTAAGT+TGG 0.500516 4.1:-33858656 MS.gene056401:CDS
TCCTTCTTTAAGGAATCAGC+TGG 0.500538 4.1:-33861438 MS.gene056401:CDS
ACAATTTGTCAGATACTATG+AGG 0.500861 4.1:-33860288 MS.gene056401:CDS
AAAATGGGATCTTGTTGTCC+TGG 0.501858 4.1:-33861270 MS.gene056401:CDS
TCGGTCATGCTTGAAGAAGT+AGG 0.504724 4.1:+33858361 None:intergenic
CATCATCAAGATACTTGAGT+TGG 0.506954 4.1:+33858107 None:intergenic
AGCGTTTAGTAGCGGTGACC+AGG 0.506987 4.1:-33860140 MS.gene056401:CDS
ACCAATATTCCTCAAAGGAG+AGG 0.507368 4.1:-33861911 MS.gene056401:CDS
ACCAGCTGATTCCTTAAAGA+AGG 0.508019 4.1:+33861437 None:intergenic
AACAAGTGGTTCAAGAAAGC+AGG 0.511373 4.1:-33859535 MS.gene056401:CDS
TTTGCATATTCACCACATGA+TGG 0.513284 4.1:-33861723 MS.gene056401:CDS
GCCTCCACGACTTCTTCCTC+AGG 0.514345 4.1:-33860892 MS.gene056401:intron
TGCGAGTTAAACACGCGACC+AGG 0.519436 4.1:+33861243 None:intergenic
TGATATCAAAATCACCTAGT+TGG 0.524042 4.1:-33861491 MS.gene056401:CDS
CAAGTATCTTGATGATGAAG+AGG 0.525082 4.1:-33858101 MS.gene056401:CDS
TTCACATCGGTATAGAAGAA+TGG 0.526209 4.1:+33860481 None:intergenic
GGTGAATGACTCAGATTTGA+AGG 0.529251 4.1:-33858065 MS.gene056401:CDS
AACACGCGACCAGGAAGTCC+AGG 0.529959 4.1:+33861252 None:intergenic
TTTAAGGAATCAGCTGGTGG+AGG 0.534319 4.1:-33861432 MS.gene056401:CDS
ATGACATCTGGAATAAATCC+TGG 0.537640 4.1:+33860122 None:intergenic
CGGTCATGCTTGAAGAAGTA+GGG 0.539130 4.1:+33858362 None:intergenic
TCTTGATGATGAAGAGGAAT+GGG 0.541215 4.1:-33858095 MS.gene056401:CDS
TGAAGAGGAATGGGTGATGT+TGG 0.542821 4.1:-33858086 MS.gene056401:CDS
AGAACAAGATCAATGTGGGT+TGG 0.543970 4.1:-33858479 MS.gene056401:CDS
TGTTGTTATAGTGAAGGAAA+AGG 0.544964 4.1:-33860694 MS.gene056401:CDS
CTTGGTTTGGAAGAAGGAAA+AGG 0.545190 4.1:-33858403 MS.gene056401:CDS
AACCTCAGTACCTAAGTTGG+AGG 0.547544 4.1:-33858653 MS.gene056401:CDS
GATCACTTGTAGTTAGGATG+AGG 0.549158 4.1:+33861367 None:intergenic
AAATCAAGCTGCTTACAGTC+AGG 0.553977 4.1:-33860071 MS.gene056401:intron
TTCTTTAAGGAATCAGCTGG+TGG 0.555577 4.1:-33861435 MS.gene056401:CDS
AAATTTGACCCTCACACTGG+TGG 0.556063 4.1:-33858745 MS.gene056401:CDS
CTGCCGTTGCAATTAGGCTA+AGG 0.556511 4.1:-33860399 MS.gene056401:CDS
CCAATATTCCTCAAAGGAGA+GGG 0.562272 4.1:-33861910 MS.gene056401:CDS
TGAGAGTTGCCCCTAGACAT+AGG 0.562581 4.1:+33860166 None:intergenic
CTGAAATTTGACCCTCACAC+TGG 0.562922 4.1:-33858748 MS.gene056401:CDS
TTCAATACAGTCAACAGGAA+TGG 0.567975 4.1:+33858576 None:intergenic
ATCAATGATAAAATGGTAGG+AGG 0.568083 4.1:-33860580 MS.gene056401:CDS
ATGGCTTTGGACAAAGACTC+AGG 0.569057 4.1:-33858542 MS.gene056401:CDS
GAGCGAATACGAATTAAAGA+AGG 0.570990 4.1:-33860661 MS.gene056401:CDS
ATTCCATGTTGTTATAGTGA+AGG 0.571178 4.1:-33860700 MS.gene056401:CDS
ATCTTGATGATGAAGAGGAA+TGG 0.571443 4.1:-33858096 MS.gene056401:CDS
TATATCAATGATAAAATGGT+AGG 0.571576 4.1:-33860583 MS.gene056401:CDS
GGAATCCATGTCAGTGCTAG+AGG 0.576033 4.1:+33860718 None:intergenic
TCCATTCACCATTGAGCCAG+AGG 0.576842 4.1:+33858327 None:intergenic
ACTGGTGGATTTGTTGCAGG+AGG 0.579516 4.1:-33858730 MS.gene056401:CDS
GTTTACCTCTAGCACTGACA+TGG 0.580401 4.1:-33860723 MS.gene056401:CDS
TTGCTCGTTCGCAATATACA+TGG 0.581173 4.1:-33857998 MS.gene056401:CDS
ATCCTCCAACTTAGGTACTG+AGG 0.587825 4.1:+33858651 None:intergenic
CACTATCAAATGGTGTCCAA+AGG 0.587917 4.1:+33861880 None:intergenic
ACCGTGCTTGATTCTGTCCA+AGG 0.587988 4.1:-33858784 MS.gene056401:CDS
CAGGTTACCGCGAAGTGTCG+AGG 0.588688 4.1:-33861317 MS.gene056401:CDS
TTTCAGAAGCTGAACTAAGA+GGG 0.591675 4.1:-33860240 MS.gene056401:CDS
AGATTTGAAGGAATGTGTAG+AGG 0.591944 4.1:-33858053 MS.gene056401:CDS
ATTCTTCTATACCGATGTGA+AGG 0.593072 4.1:-33860479 MS.gene056401:CDS
AGTTGAAAACAACCTACAGA+TGG 0.595183 4.1:+33858175 None:intergenic
CCTGAATGGACCTCTAATGT+TGG 0.597938 4.1:-33861216 MS.gene056401:CDS
AAGAGAATATGCAGACAACA+TGG 0.598011 4.1:-33858868 MS.gene056401:CDS
GAACTCCCTATCATATTGAT+CGG 0.598238 4.1:+33860331 None:intergenic
TTCAAGTTCGATCCATCTGT+AGG 0.601990 4.1:-33858187 MS.gene056401:CDS
ACTTTATTTATCTTGCGCGA+TGG 0.602825 4.1:+33858832 None:intergenic
CTCTCATCAAGTGACCAACT+AGG 0.606095 4.1:+33861477 None:intergenic
GACAACATGGAATTTCAAGA+TGG 0.607708 4.1:-33858855 MS.gene056401:CDS
GCTAAATTCAATCCATCATG+TGG 0.611746 4.1:+33861711 None:intergenic
GGTGTCAAAGCTAACTATAG+AGG 0.613947 4.1:-33858223 MS.gene056401:CDS
GGAAGACCAATATTCCTCAA+AGG 0.615335 4.1:-33861916 MS.gene056401:CDS
GCAACAAATCCACCAGTGTG+AGG 0.619119 4.1:+33858736 None:intergenic
TCTGAACATCATCTTGAGGA+AGG 0.620522 4.1:-33860541 MS.gene056401:CDS
GAAATTGGTGGAAATTACAA+TGG 0.620723 4.1:-33861657 MS.gene056401:CDS
CATCATCTTGAGGAAGGACA+AGG 0.623347 4.1:-33860535 MS.gene056401:CDS
TTCAAGAACATAATCTACAG+AGG 0.626110 4.1:+33858504 None:intergenic
CAACAAATCCACCAGTGTGA+GGG 0.632421 4.1:+33858737 None:intergenic
TTTCGCGCGTGATGAACAAG+CGG 0.638493 4.1:+33860436 None:intergenic
AATACCTGAGGAAGAAGTCG+TGG 0.639662 4.1:+33860888 None:intergenic
ACTTTGATAGCTATGCTGGT+TGG 0.641227 4.1:-33861800 MS.gene056401:CDS
TTTCCTTCACTATAACAACA+TGG 0.644491 4.1:+33860697 None:intergenic
ATGTTCTGAACATCATCTTG+AGG 0.650977 4.1:-33860545 MS.gene056401:CDS
ACTCCTTAGCCTAATTGCAA+CGG 0.651625 4.1:+33860396 None:intergenic
ACTTGAACTTGTCACTACAA+AGG 0.651739 4.1:-33861079 MS.gene056401:CDS
TCTTGTTTCTAATTCATGTG+AGG 0.659934 4.1:-33858620 MS.gene056401:CDS
TCCTTGGACAGAATCAAGCA+CGG 0.660179 4.1:+33858783 None:intergenic
AGATCATGCGATTAGTCACG+AGG 0.673342 4.1:-33861163 MS.gene056401:CDS
GCGATTAGTCACGAGGTTCG+GGG 0.680730 4.1:-33861156 MS.gene056401:CDS
ACCTGAGGAAGAAGTCGTGG+AGG 0.684396 4.1:+33860891 None:intergenic
CAATATTCCTCAAAGGAGAG+GGG 0.686366 4.1:-33861909 MS.gene056401:CDS
GTATTGAAGATTCAACAACA+TGG 0.706035 4.1:-33858561 MS.gene056401:CDS
CTCGTTCGCAATATACATGG+CGG 0.709197 4.1:-33857995 MS.gene056401:CDS
TCTCAGATAGCGTTTAGTAG+CGG 0.712734 4.1:-33860148 MS.gene056401:CDS
AACATCATAAGCCTTCACAT+CGG 0.714348 4.1:+33860468 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTACAAATGTTAAA+AGG + chr4.1:33860334-33860353 None:intergenic 15.0%
!! ATTTCACATTAAATTCTAAA+AGG + chr4.1:33859886-33859905 None:intergenic 15.0%
!!! AAAAGATTTAAGTTACAAAA+TGG - chr4.1:33861764-33861783 MS.gene056401:CDS 15.0%
!!! TTGCTATTTTTAATGTATTT+TGG - chr4.1:33860301-33860320 MS.gene056401:CDS 15.0%
!!! TTTGTAGTAATTTTTCTTAT+AGG - chr4.1:33860341-33860360 MS.gene056401:CDS 15.0%
!! AAATGATATATCAGAAATTC+AGG + chr4.1:33859046-33859065 None:intergenic 20.0%
!! AATTTAGATTCACAACAAAA+TGG - chr4.1:33858363-33858382 MS.gene056401:CDS 20.0%
!! ACATTAAAAATAGCAACAAA+AGG + chr4.1:33860297-33860316 None:intergenic 20.0%
!! CAAAGTTAAAAGATAAATCA+AGG + chr4.1:33860268-33860287 None:intergenic 20.0%
!! GAAAATAGAAAAGTAGTATA+TGG + chr4.1:33858922-33858941 None:intergenic 20.0%
!! TATATCAATGATAAAATGGT+AGG - chr4.1:33859317-33859336 MS.gene056401:intron 20.0%
!! TCTAATTCTTTGTCAAAATT+AGG + chr4.1:33858852-33858871 None:intergenic 20.0%
!! TTGCTATATCAATGATAAAA+TGG - chr4.1:33859313-33859332 MS.gene056401:intron 20.0%
!! TTTATTGACAAGAATTAACT+AGG + chr4.1:33860949-33860968 None:intergenic 20.0%
!!! AAATGTATATAAGTTGGAAT+TGG + chr4.1:33860862-33860881 None:intergenic 20.0%
!!! ATTAACTCAGCTTATTATTT+TGG - chr4.1:33860542-33860561 MS.gene056401:CDS 20.0%
!!! TTAACTCAGCTTATTATTTT+GGG - chr4.1:33860543-33860562 MS.gene056401:CDS 20.0%
!!! TTTTATCTGAAATTCTTAAC+AGG - chr4.1:33859063-33859082 MS.gene056401:intron 20.0%
! AAAAAGAACAAGATCAATGT+GGG - chr4.1:33861417-33861436 MS.gene056401:CDS 25.0%
! AAAGATGCTGCAAAAAAAAT+TGG - chr4.1:33860462-33860481 MS.gene056401:CDS 25.0%
! AAGATGCTGCAAAAAAAATT+GGG - chr4.1:33860463-33860482 MS.gene056401:CDS 25.0%
! AATAGAAAAGTAGTATATGG+TGG + chr4.1:33858919-33858938 None:intergenic 25.0%
! AATTTAGCTGAACACATAAA+TGG - chr4.1:33858204-33858223 MS.gene056401:CDS 25.0%
! ATAGCAAATTAAGTGTGATA+TGG + chr4.1:33860219-33860238 None:intergenic 25.0%
! CCAATTTCTGTCATAAAAAA+TGG + chr4.1:33858231-33858250 None:intergenic 25.0%
! CGATATTTGATTACAAAGTT+TGG - chr4.1:33860029-33860048 MS.gene056401:intron 25.0%
! GAAACATATGCTTCTTAAAA+TGG + chr4.1:33859916-33859935 None:intergenic 25.0%
! TACACACTGCATAAAAAAAA+AGG + chr4.1:33859090-33859109 None:intergenic 25.0%
! TGGTGAAAATGTATATAAGT+TGG + chr4.1:33860868-33860887 None:intergenic 25.0%
! TTCTCAATATGAGTTTCAAA+AGG - chr4.1:33859691-33859710 MS.gene056401:intron 25.0%
! TTTATATGTTTACTTAGAGC+AGG + chr4.1:33860664-33860683 None:intergenic 25.0%
! TTTCATTAGAACTTGTCATA+TGG + chr4.1:33859265-33859284 None:intergenic 25.0%
!! AAATGTGCTATTACAAGAAA+TGG - chr4.1:33858293-33858312 MS.gene056401:CDS 25.0%
!! AGCTTTTGATCTAACAAATA+TGG + chr4.1:33858561-33858580 None:intergenic 25.0%
!! TTTTCTGCAGAAATGAAAAT+GGG - chr4.1:33858615-33858634 MS.gene056401:CDS 25.0%
!!! ATCACACTTAATTTGCTATA+GGG - chr4.1:33860220-33860239 MS.gene056401:CDS 25.0%
!!! CCATTTTTTATGACAGAAAT+TGG - chr4.1:33858228-33858247 MS.gene056401:CDS 25.0%
!!! CTGATTAAGTTTTTTTCGTA+TGG + chr4.1:33860001-33860020 None:intergenic 25.0%
!!! CTTGATTTCCACTATTTTTT+AGG + chr4.1:33859817-33859836 None:intergenic 25.0%
!!! TATCACACTTAATTTGCTAT+AGG - chr4.1:33860219-33860238 MS.gene056401:CDS 25.0%
!!! TCTTTTTCAATGATTGAACT+TGG - chr4.1:33861479-33861498 MS.gene056401:CDS 25.0%
!!! TTTCAAGTTATTGTGTATCA+TGG - chr4.1:33859932-33859951 MS.gene056401:intron 25.0%
!!! TTTTTTATGACAGAAATTGG+TGG - chr4.1:33858231-33858250 MS.gene056401:CDS 25.0%
AAGACACAAACGATTGATAA+CGG - chr4.1:33860691-33860710 MS.gene056401:CDS 30.0%
ACAATTTGTCAGATACTATG+AGG - chr4.1:33859612-33859631 MS.gene056401:intron 30.0%
ACTACAAATGTTAAAAGGCA+TGG + chr4.1:33860329-33860348 None:intergenic 30.0%
AGATGCTGCAAAAAAAATTG+GGG - chr4.1:33860464-33860483 MS.gene056401:CDS 30.0%
ATCAATGATAAAATGGTAGG+AGG - chr4.1:33859320-33859339 MS.gene056401:intron 30.0%
ATCCAAAAAGTCTTACCATT+TGG - chr4.1:33860823-33860842 MS.gene056401:intron 30.0%
ATTCCATGTTGTTATAGTGA+AGG - chr4.1:33859200-33859219 MS.gene056401:intron 30.0%
GAAAAAGAACAAGATCAATG+TGG - chr4.1:33861416-33861435 MS.gene056401:CDS 30.0%
GAAAATATCATGAACAACCA+AGG + chr4.1:33860903-33860922 None:intergenic 30.0%
GAAACGAACCTAAAAAATAG+TGG - chr4.1:33859806-33859825 MS.gene056401:intron 30.0%
GAAATTGGTGGAAATTACAA+TGG - chr4.1:33858243-33858262 MS.gene056401:CDS 30.0%
GTATTGAAGATTCAACAACA+TGG - chr4.1:33861339-33861358 MS.gene056401:CDS 30.0%
GTCGATAGTGAATCAAAATT+CGG - chr4.1:33861656-33861675 MS.gene056401:CDS 30.0%
TAACCAACAGAATGAAATCT+GGG - chr4.1:33860179-33860198 MS.gene056401:CDS 30.0%
TATTATGCGTACCAATTTGT+TGG + chr4.1:33861205-33861224 None:intergenic 30.0%
TCAGAGTTCATATCAGATAT+AGG + chr4.1:33858783-33858802 None:intergenic 30.0%
TGATATCAAAATCACCTAGT+TGG - chr4.1:33858409-33858428 MS.gene056401:CDS 30.0%
TGCAACTCTTAAACTTATGA+TGG + chr4.1:33860616-33860635 None:intergenic 30.0%
TGTTGTTATAGTGAAGGAAA+AGG - chr4.1:33859206-33859225 MS.gene056401:intron 30.0%
TTCAAGAACATAATCTACAG+AGG + chr4.1:33861399-33861418 None:intergenic 30.0%
TTCAATGATTGAACTTGGTT+TGG - chr4.1:33861484-33861503 MS.gene056401:CDS 30.0%
TTCTTCCGATCAATATGATA+GGG - chr4.1:33859564-33859583 MS.gene056401:intron 30.0%
TTTCAAAAGGAAAATGTCTC+AGG - chr4.1:33859704-33859723 MS.gene056401:intron 30.0%
TTTCCTTCACTATAACAACA+TGG + chr4.1:33859206-33859225 None:intergenic 30.0%
TTTCTTCCGATCAATATGAT+AGG - chr4.1:33859563-33859582 MS.gene056401:intron 30.0%
! AACATGTCATCTGAAGTTAA+TGG + chr4.1:33858057-33858076 None:intergenic 30.0%
! AATAGTAGTTTGCATGATGT+TGG - chr4.1:33861446-33861465 MS.gene056401:CDS 30.0%
! CACATTTTCATCATAACTAG+TGG + chr4.1:33858280-33858299 None:intergenic 30.0%
! CTTTTCATTCCACTATCAAA+TGG + chr4.1:33858033-33858052 None:intergenic 30.0%
! CTTTTTGGATATGTTGAGTA+TGG + chr4.1:33860813-33860832 None:intergenic 30.0%
! GTTTTCTGCAGAAATGAAAA+TGG - chr4.1:33858614-33858633 MS.gene056401:CDS 30.0%
! TAATCTACAGAGGTTTGTTT+AGG + chr4.1:33861389-33861408 None:intergenic 30.0%
! TTTTTCTTATAGGCAACAAG+TGG - chr4.1:33860351-33860370 MS.gene056401:CDS 30.0%
!! CTGTTAGCACTGAAATTTTA+GGG - chr4.1:33860095-33860114 MS.gene056401:CDS 30.0%
!! TCACACTTAATTTGCTATAG+GGG - chr4.1:33860221-33860240 MS.gene056401:CDS 30.0%
!! TCTGTTAGCACTGAAATTTT+AGG - chr4.1:33860094-33860113 MS.gene056401:CDS 30.0%
!! TCTTGTTTCTAATTCATGTG+AGG - chr4.1:33861280-33861299 MS.gene056401:CDS 30.0%
!!! AAATTTTAGGGTATACAGGA+TGG - chr4.1:33860107-33860126 MS.gene056401:CDS 30.0%
!!! ACTGAAATTTTAGGGTATAC+AGG - chr4.1:33860103-33860122 MS.gene056401:CDS 30.0%
!!! AGGTTTTTTTCCTATGTCTA+GGG - chr4.1:33859724-33859743 MS.gene056401:intron 30.0%
!!! ATGGTTTACTTTTTTGAACC+AGG + chr4.1:33859982-33860001 None:intergenic 30.0%
!!! ATTTGATTTTTGAGTGCTTC+TGG + chr4.1:33861628-33861647 None:intergenic 30.0%
!!! CTTATTATTTTGGGTTGTGT+TGG - chr4.1:33860552-33860571 MS.gene056401:CDS 30.0%
!!! TGGTTTACTTTTTTGAACCA+GGG + chr4.1:33859981-33860000 None:intergenic 30.0%
AACATCATAAGCCTTCACAT+CGG + chr4.1:33859435-33859454 None:intergenic 35.0%
AACCAACAGAATGAAATCTG+GGG - chr4.1:33860180-33860199 MS.gene056401:CDS 35.0%
AACCAAGGATGTTATGAACT+TGG + chr4.1:33860888-33860907 None:intergenic 35.0%
AAGAGAATATGCAGACAACA+TGG - chr4.1:33861032-33861051 MS.gene056401:CDS 35.0%
AAGATTCAACAACATGGCTT+TGG - chr4.1:33861345-33861364 MS.gene056401:CDS 35.0%
ACAAGAATTAACTAGGTGAG+AGG + chr4.1:33860942-33860961 None:intergenic 35.0%
ACTTGAACTTGTCACTACAA+AGG - chr4.1:33858821-33858840 MS.gene056401:CDS 35.0%
AGATTTGAAGGAATGTGTAG+AGG - chr4.1:33861847-33861866 MS.gene056401:CDS 35.0%
AGGAATACTAGCACAAGTTT+GGG - chr4.1:33858488-33858507 MS.gene056401:CDS 35.0%
AGGTCATCACCATACTTTAT+AGG + chr4.1:33858516-33858535 None:intergenic 35.0%
AGTTGAAAACAACCTACAGA+TGG + chr4.1:33861728-33861747 None:intergenic 35.0%
ATGATAGTAGCCAACATTAG+AGG + chr4.1:33858697-33858716 None:intergenic 35.0%
ATGGTTGATCACTTGTAGTT+AGG + chr4.1:33858542-33858561 None:intergenic 35.0%
ATTCTTCTATACCGATGTGA+AGG - chr4.1:33859421-33859440 MS.gene056401:intron 35.0%
CAAGAATTAACTAGGTGAGA+GGG + chr4.1:33860941-33860960 None:intergenic 35.0%
CATATTCTCTTCAGAGTTGT+TGG + chr4.1:33861023-33861042 None:intergenic 35.0%
CATCATCAAGATACTTGAGT+TGG + chr4.1:33861796-33861815 None:intergenic 35.0%
GAACTCCCTATCATATTGAT+CGG + chr4.1:33859572-33859591 None:intergenic 35.0%
GAATCTTCAATACAGTCAAC+AGG + chr4.1:33861332-33861351 None:intergenic 35.0%
GACAACATGGAATTTCAAGA+TGG - chr4.1:33861045-33861064 MS.gene056401:CDS 35.0%
GAGCGAATACGAATTAAAGA+AGG - chr4.1:33859239-33859258 MS.gene056401:intron 35.0%
GAGTGCTTTATCCTTCTTTA+AGG - chr4.1:33858452-33858471 MS.gene056401:CDS 35.0%
GATGCTGCAAAAAAAATTGG+GGG - chr4.1:33860465-33860484 MS.gene056401:CDS 35.0%
GCTAAATTCAATCCATCATG+TGG + chr4.1:33858192-33858211 None:intergenic 35.0%
GCTCTTATTCACAGATAAGT+GGG + chr4.1:33860791-33860810 None:intergenic 35.0%
GGAGAATTTGTAAGAGTTTG+AGG - chr4.1:33859633-33859652 MS.gene056401:intron 35.0%
GGTTCAATCATCCAACAAAT+TGG - chr4.1:33861191-33861210 MS.gene056401:CDS 35.0%
GTAACCAACAGAATGAAATC+TGG - chr4.1:33860178-33860197 MS.gene056401:CDS 35.0%
TAATTCATGTGAGGCAGAAT+TGG - chr4.1:33861289-33861308 MS.gene056401:CDS 35.0%
TGGTGGAAATTACAATGGTA+TGG - chr4.1:33858248-33858267 MS.gene056401:CDS 35.0%
TTCAATACAGTCAACAGGAA+TGG + chr4.1:33861327-33861346 None:intergenic 35.0%
TTCACATCGGTATAGAAGAA+TGG + chr4.1:33859422-33859441 None:intergenic 35.0%
TTGTTAGATCAAAAGCTTGC+AGG - chr4.1:33858564-33858583 MS.gene056401:CDS 35.0%
TTTCAGAAGCTGAACTAAGA+GGG - chr4.1:33859660-33859679 MS.gene056401:intron 35.0%
TTTGCATATTCACCACATGA+TGG - chr4.1:33858177-33858196 MS.gene056401:CDS 35.0%
! AATTTAGAGTTGACCCATTG+AGG - chr4.1:33860576-33860595 MS.gene056401:CDS 35.0%
! ACTTTATTTATCTTGCGCGA+TGG + chr4.1:33861071-33861090 None:intergenic 35.0%
! ATGAACTTTGATAGCTATGC+TGG - chr4.1:33858096-33858115 MS.gene056401:CDS 35.0%
! ATGACATCTGGAATAAATCC+TGG + chr4.1:33859781-33859800 None:intergenic 35.0%
! ATGTTCTGAACATCATCTTG+AGG - chr4.1:33859355-33859374 MS.gene056401:intron 35.0%
! ATTTAGAGTTGACCCATTGA+GGG - chr4.1:33860577-33860596 MS.gene056401:CDS 35.0%
! ATTTGTTTCTCATGCACTTC+AGG - chr4.1:33858872-33858891 MS.gene056401:CDS 35.0%
! GTCCAAATGGTAAGACTTTT+TGG + chr4.1:33860828-33860847 None:intergenic 35.0%
! GTTCTCCAACAATACTTTTC+TGG - chr4.1:33860432-33860451 MS.gene056401:CDS 35.0%
!! ATCTTGATGATGAAGAGGAA+TGG - chr4.1:33861804-33861823 MS.gene056401:CDS 35.0%
!! ATTGAACTTGGTTTGGAAGA+AGG - chr4.1:33861491-33861510 MS.gene056401:CDS 35.0%
!! CAAGTATCTTGATGATGAAG+AGG - chr4.1:33861799-33861818 MS.gene056401:CDS 35.0%
!! GACTACCAGAAAAGTATTGT+TGG + chr4.1:33860440-33860459 None:intergenic 35.0%
!! TCTTGATGATGAAGAGGAAT+GGG - chr4.1:33861805-33861824 MS.gene056401:CDS 35.0%
!!! CAGGTTTTTTTCCTATGTCT+AGG - chr4.1:33859723-33859742 MS.gene056401:intron 35.0%
!!! GGTTTTTTTCCTATGTCTAG+GGG - chr4.1:33859725-33859744 MS.gene056401:intron 35.0%
AAATCAAGCTGCTTACAGTC+AGG - chr4.1:33859829-33859848 MS.gene056401:intron 40.0%
AACAAGTGGTTCAAGAAAGC+AGG - chr4.1:33860365-33860384 MS.gene056401:CDS 40.0%
ACATCTTCATCCTCCAACTT+AGG + chr4.1:33861260-33861279 None:intergenic 40.0%
ACCAACAGAATGAAATCTGG+GGG - chr4.1:33860181-33860200 MS.gene056401:CDS 40.0%
ACCAATATTCCTCAAAGGAG+AGG - chr4.1:33857989-33858008 MS.gene056401:CDS 40.0%
ACTCCTTAGCCTAATTGCAA+CGG + chr4.1:33859507-33859526 None:intergenic 40.0%
AGAACAAGATCAATGTGGGT+TGG - chr4.1:33861421-33861440 MS.gene056401:CDS 40.0%
ATGGTGAATGGAAGTTCATC+AGG - chr4.1:33861584-33861603 MS.gene056401:CDS 40.0%
CAACTCCTGGTTTACTGATA+AGG + chr4.1:33860151-33860170 None:intergenic 40.0%
CAATATTCCTCAAAGGAGAG+GGG - chr4.1:33857991-33858010 MS.gene056401:CDS 40.0%
CACCAAGTTCATAACATCCT+TGG - chr4.1:33860883-33860902 MS.gene056401:intron 40.0%
CACTATCAAATGGTGTCCAA+AGG + chr4.1:33858023-33858042 None:intergenic 40.0%
CCAATATTCCTCAAAGGAGA+GGG - chr4.1:33857990-33858009 MS.gene056401:CDS 40.0%
CTTTGGACACCATTTGATAG+TGG - chr4.1:33858021-33858040 MS.gene056401:CDS 40.0%
GAAAACCTCAGTACCTAAGT+TGG - chr4.1:33861244-33861263 MS.gene056401:CDS 40.0%
GAGGAATACTAGCACAAGTT+TGG - chr4.1:33858487-33858506 MS.gene056401:CDS 40.0%
GATCACTTGTAGTTAGGATG+AGG + chr4.1:33858536-33858555 None:intergenic 40.0%
GGAAGACCAATATTCCTCAA+AGG - chr4.1:33857984-33858003 MS.gene056401:CDS 40.0%
GGCTCTTATTCACAGATAAG+TGG + chr4.1:33860792-33860811 None:intergenic 40.0%
GGTGAATGACTCAGATTTGA+AGG - chr4.1:33861835-33861854 MS.gene056401:CDS 40.0%
GGTGTCAAAGCTAACTATAG+AGG - chr4.1:33861677-33861696 MS.gene056401:CDS 40.0%
GGTTACAAACTTACAACTCC+TGG + chr4.1:33860164-33860183 None:intergenic 40.0%
GTCAGAGACGTAAGCAAAAT+TGG + chr4.1:33860724-33860743 None:intergenic 40.0%
GTTTCAGAAGCTGAACTAAG+AGG - chr4.1:33859659-33859678 MS.gene056401:intron 40.0%
GTTTGGGCACCTATAAAGTA+TGG - chr4.1:33858504-33858523 MS.gene056401:CDS 40.0%
TCGTTTCGTTGAATGACATC+TGG + chr4.1:33859793-33859812 None:intergenic 40.0%
TCTCAGATAGCGTTTAGTAG+CGG - chr4.1:33859752-33859771 MS.gene056401:intron 40.0%
TCTGAACATCATCTTGAGGA+AGG - chr4.1:33859359-33859378 MS.gene056401:intron 40.0%
TGCTTCCTTATCAGTAAACC+AGG - chr4.1:33860143-33860162 MS.gene056401:CDS 40.0%
TGGTTTACTGATAAGGAAGC+AGG + chr4.1:33860144-33860163 None:intergenic 40.0%
TTAACTCGCATGTTCCTGAA+TGG - chr4.1:33858670-33858689 MS.gene056401:CDS 40.0%
TTGCTCGTTCGCAATATACA+TGG - chr4.1:33861902-33861921 MS.gene056401:CDS 40.0%
! AAAATGGGATCTTGTTGTCC+TGG - chr4.1:33858630-33858649 MS.gene056401:CDS 40.0%
! ACCAGCTGATTCCTTAAAGA+AGG + chr4.1:33858466-33858485 None:intergenic 40.0%
! ACTTTGATAGCTATGCTGGT+TGG - chr4.1:33858100-33858119 MS.gene056401:CDS 40.0%
! TCCTTCTTTAAGGAATCAGC+TGG - chr4.1:33858462-33858481 MS.gene056401:CDS 40.0%
! TTCAAGTTCGATCCATCTGT+AGG - chr4.1:33861713-33861732 MS.gene056401:CDS 40.0%
! TTCTTTAAGGAATCAGCTGG+TGG - chr4.1:33858465-33858484 MS.gene056401:CDS 40.0%
!! CTTGGTTTGGAAGAAGGAAA+AGG - chr4.1:33861497-33861516 MS.gene056401:CDS 40.0%
!!! GTAGAGGTTTTGAGTGACAT+TGG - chr4.1:33861863-33861882 MS.gene056401:CDS 40.0%
!!! TAGGTACTGAGGTTTTCTCA+GGG + chr4.1:33861241-33861260 None:intergenic 40.0%
!!! TTAGGTACTGAGGTTTTCTC+AGG + chr4.1:33861242-33861261 None:intergenic 40.0%
AAATTTGACCCTCACACTGG+TGG - chr4.1:33861155-33861174 MS.gene056401:CDS 45.0%
AACAGAATGAAATCTGGGGG+AGG - chr4.1:33860184-33860203 MS.gene056401:CDS 45.0%
AATACCTGAGGAAGAAGTCG+TGG + chr4.1:33859015-33859034 None:intergenic 45.0%
ACAGAATGAAATCTGGGGGA+GGG - chr4.1:33860185-33860204 MS.gene056401:CDS 45.0%
AGAACTCTGAACATCAACCC+TGG - chr4.1:33859961-33859980 MS.gene056401:intron 45.0%
CAACAAATCCACCAGTGTGA+GGG + chr4.1:33861166-33861185 None:intergenic 45.0%
CAGGAATCTGCAAATACCTG+AGG + chr4.1:33859027-33859046 None:intergenic 45.0%
CATCATCTTGAGGAAGGACA+AGG - chr4.1:33859365-33859384 MS.gene056401:intron 45.0%
CCAACATTAGAGGTCCATTC+AGG + chr4.1:33858687-33858706 None:intergenic 45.0%
CCTGAATGGACCTCTAATGT+TGG - chr4.1:33858684-33858703 MS.gene056401:CDS 45.0%
CGGTCATGCTTGAAGAAGTA+GGG + chr4.1:33861541-33861560 None:intergenic 45.0%
CTCGTTCGCAATATACATGG+CGG - chr4.1:33861905-33861924 MS.gene056401:CDS 45.0%
CTCTCATCAAGTGACCAACT+AGG + chr4.1:33858426-33858445 None:intergenic 45.0%
CTGAAATTTGACCCTCACAC+TGG - chr4.1:33861152-33861171 MS.gene056401:CDS 45.0%
GAAAGCAGGCTGAGAAAAAG+AGG - chr4.1:33860379-33860398 MS.gene056401:CDS 45.0%
GAGGAAGGACAAGGTATATC+TGG - chr4.1:33859374-33859393 MS.gene056401:intron 45.0%
GATTCTGTCCAAGGAGTTGA+AGG - chr4.1:33861125-33861144 MS.gene056401:CDS 45.0%
GCTGAACTAAGAGGGATAGA+AGG - chr4.1:33859668-33859687 MS.gene056401:intron 45.0%
GTTTCTCATGCACTTCAGGT+TGG - chr4.1:33858876-33858895 MS.gene056401:CDS 45.0%
TCAGAACTCCTTCAACTCCT+TGG + chr4.1:33861136-33861155 None:intergenic 45.0%
TCCCCCAGATTTCATTCTGT+TGG + chr4.1:33860185-33860204 None:intergenic 45.0%
TCCTTGGACAGAATCAAGCA+CGG + chr4.1:33861120-33861139 None:intergenic 45.0%
TCGGTCATGCTTGAAGAAGT+AGG + chr4.1:33861542-33861561 None:intergenic 45.0%
TGAAGAGGAATGGGTGATGT+TGG - chr4.1:33861814-33861833 MS.gene056401:CDS 45.0%
TGAATGCTGCCGTTGCAATT+AGG - chr4.1:33859495-33859514 MS.gene056401:CDS 45.0%
TTTAAGGAATCAGCTGGTGG+AGG - chr4.1:33858468-33858487 MS.gene056401:CDS 45.0%
TTTCGCAGCGTGTGAATCTA+AGG - chr4.1:33858977-33858996 MS.gene056401:intron 45.0%
! AACCTCAGTACCTAAGTTGG+AGG - chr4.1:33861247-33861266 MS.gene056401:CDS 45.0%
! AGATCATGCGATTAGTCACG+AGG - chr4.1:33858737-33858756 MS.gene056401:CDS 45.0%
! ATCCTCCAACTTAGGTACTG+AGG + chr4.1:33861252-33861271 None:intergenic 45.0%
! ATGCGATTAGTCACGAGGTT+CGG - chr4.1:33858742-33858761 MS.gene056401:CDS 45.0%
! CCCTCTCCTTTGAGGAATAT+TGG + chr4.1:33857993-33858012 None:intergenic 45.0%
! GGAGAGTGTATGAGTCCAAA+TGG + chr4.1:33860841-33860860 None:intergenic 45.0%
!! ATGGCTTTGGACAAAGACTC+AGG - chr4.1:33861358-33861377 MS.gene056401:CDS 45.0%
!! GTTTACCTCTAGCACTGACA+TGG - chr4.1:33859177-33859196 MS.gene056401:intron 45.0%
!! TGAGAAAAAGAGGAGTGCTG+TGG - chr4.1:33860389-33860408 MS.gene056401:CDS 45.0%
!! TTGCATGATGTTGGCTCTCA+TGG - chr4.1:33861455-33861474 MS.gene056401:CDS 45.0%
ACCGTGCTTGATTCTGTCCA+AGG - chr4.1:33861116-33861135 MS.gene056401:CDS 50.0%
AGAATGAAATCTGGGGGAGG+GGG - chr4.1:33860187-33860206 MS.gene056401:CDS 50.0%
CACAGATAAGTGGGCAGATG+CGG + chr4.1:33860782-33860801 None:intergenic 50.0%
CAGAATGAAATCTGGGGGAG+GGG - chr4.1:33860186-33860205 MS.gene056401:CDS 50.0%
CAGTCGAGGCGTGGAATAAT+TGG + chr4.1:33860055-33860074 None:intergenic 50.0%
CTGCCGTTGCAATTAGGCTA+AGG - chr4.1:33859501-33859520 MS.gene056401:CDS 50.0%
GCAACAAATCCACCAGTGTG+AGG + chr4.1:33861167-33861186 None:intergenic 50.0%
GCTATAGGGGAGTGAAACAG+TGG - chr4.1:33860234-33860253 MS.gene056401:CDS 50.0%
GGAATCCATGTCAGTGCTAG+AGG + chr4.1:33859185-33859204 None:intergenic 50.0%
TAAACGACCTCGACACTTCG+CGG + chr4.1:33858593-33858612 None:intergenic 50.0%
TCCATTCACCATTGAGCCAG+AGG + chr4.1:33861576-33861595 None:intergenic 50.0%
TGAGAGTTGCCCCTAGACAT+AGG + chr4.1:33859737-33859756 None:intergenic 50.0%
TTTCGCGCGTGATGAACAAG+CGG + chr4.1:33859467-33859486 None:intergenic 50.0%
! ACCGATTCATCGAATGCCTC+TGG - chr4.1:33861557-33861576 MS.gene056401:CDS 50.0%
! AGCTATGCTGGTTGGTGCAA+TGG - chr4.1:33858108-33858127 MS.gene056401:CDS 50.0%
! ATCGAATGCCTCTGGCTCAA+TGG - chr4.1:33861565-33861584 MS.gene056401:CDS 50.0%
! TCTTGTTGTCCTGGACTTCC+TGG - chr4.1:33858639-33858658 MS.gene056401:CDS 50.0%
! TGCGATTAGTCACGAGGTTC+GGG - chr4.1:33858743-33858762 MS.gene056401:CDS 50.0%
! TTGACCCATTGAGGGTGTGA+GGG - chr4.1:33860585-33860604 MS.gene056401:CDS 50.0%
!! ACTGGTGGATTTGTTGCAGG+AGG - chr4.1:33861170-33861189 MS.gene056401:CDS 50.0%
!! CACACTGGTGGATTTGTTGC+AGG - chr4.1:33861167-33861186 MS.gene056401:CDS 50.0%
!! GCCAGAGGCATTCGATGAAT+CGG + chr4.1:33861561-33861580 None:intergenic 50.0%
ACCAACCCTCACACCCTCAA+TGG + chr4.1:33860593-33860612 None:intergenic 55.0%
ACCTGAGGAAGAAGTCGTGG+AGG + chr4.1:33859012-33859031 None:intergenic 55.0%
ACTGCAGCGCTTTACAGTCG+AGG + chr4.1:33860069-33860088 None:intergenic 55.0%
AGCGTTTAGTAGCGGTGACC+AGG - chr4.1:33859760-33859779 MS.gene056401:intron 55.0%
AGGAGAGGGGAATCAGCCTT+TGG - chr4.1:33858004-33858023 MS.gene056401:CDS 55.0%
CCAACCCTCACACCCTCAAT+GGG + chr4.1:33860592-33860611 None:intergenic 55.0%
GAATGAAATCTGGGGGAGGG+GGG - chr4.1:33860188-33860207 MS.gene056401:CDS 55.0%
TGCGAGTTAAACACGCGACC+AGG + chr4.1:33858660-33858679 None:intergenic 55.0%
! GCCTCTGGCTCAATGGTGAA+TGG - chr4.1:33861572-33861591 MS.gene056401:CDS 55.0%
! GCGATTAGTCACGAGGTTCG+GGG - chr4.1:33858744-33858763 MS.gene056401:CDS 55.0%
! GCTGATTCCCCTCTCCTTTG+AGG + chr4.1:33858001-33858020 None:intergenic 55.0%
! GTTGACCCATTGAGGGTGTG+AGG - chr4.1:33860584-33860603 MS.gene056401:CDS 55.0%
AACACGCGACCAGGAAGTCC+AGG + chr4.1:33858651-33858670 None:intergenic 60.0%
AGCGCTTTACAGTCGAGGCG+TGG + chr4.1:33860064-33860083 None:intergenic 60.0%
GCCTCCACGACTTCTTCCTC+AGG - chr4.1:33859008-33859027 MS.gene056401:intron 60.0%
! CCCATTGAGGGTGTGAGGGT+TGG - chr4.1:33860589-33860608 MS.gene056401:CDS 60.0%
!! CAGGTTACCGCGAAGTGTCG+AGG - chr4.1:33858583-33858602 MS.gene056401:CDS 60.0%
GTGGGCAGATGCGGAGCAAG+TGG + chr4.1:33860773-33860792 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 33857982 33861940 33857982 ID=MS.gene056401
chr4.1 mRNA 33857982 33861940 33857982 ID=MS.gene056401.t1;Parent=MS.gene056401
chr4.1 exon 33861029 33861940 33861029 ID=MS.gene056401.t1.exon1;Parent=MS.gene056401.t1
chr4.1 CDS 33861029 33861940 33861029 ID=cds.MS.gene056401.t1;Parent=MS.gene056401.t1
chr4.1 exon 33860893 33860937 33860893 ID=MS.gene056401.t1.exon2;Parent=MS.gene056401.t1
chr4.1 CDS 33860893 33860937 33860893 ID=cds.MS.gene056401.t1;Parent=MS.gene056401.t1
chr4.1 exon 33860072 33860818 33860072 ID=MS.gene056401.t1.exon3;Parent=MS.gene056401.t1
chr4.1 CDS 33860072 33860818 33860072 ID=cds.MS.gene056401.t1;Parent=MS.gene056401.t1
chr4.1 exon 33859436 33859559 33859436 ID=MS.gene056401.t1.exon4;Parent=MS.gene056401.t1
chr4.1 CDS 33859436 33859559 33859436 ID=cds.MS.gene056401.t1;Parent=MS.gene056401.t1
chr4.1 exon 33857982 33858907 33857982 ID=MS.gene056401.t1.exon5;Parent=MS.gene056401.t1
chr4.1 CDS 33857982 33858907 33857982 ID=cds.MS.gene056401.t1;Parent=MS.gene056401.t1
Gene Sequence

>MS.gene056401

ATGGAAGACCAATATTCCTCAAAGGAGAGGGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTCCATTAACTTCAGATGACATGTTTAACAACATCTCTGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATTCACCACATGATGGATTGAATTTAGCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGGTATGGATAGTTCCACTAGTTATGATGAAAATGTGCTATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATAATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATGATATCAAAATCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACCTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTGTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTCCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGCTACTATCATAAATCTGAGTACTTGAGATTAGATCATGCGATTAGTCACGAGGTTCGGGGATCGATTGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGGTTGGTTTTTCTTTTGCTACTTCCACCATATACTACTTTTCTATTTTCAAATTGTGTTATAATTAAATGCATTTTTCGTGACTTTTCGCAGCGTGTGAATCTAAGGACTATTATGCCTCCACGACTTCTTCCTCAGGTATTTGCAGATTCCTGAATTTCTGATATATCATTTTATCTGAAATTCTTAACAGGTCCTTTTTTTTTATGCAGTGTGTATCAAATAACAAAAGAGCTGCGTTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTTTACCTCTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGAATTAAAGAAGGCCATATGACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCGCTTGTTCATCACGCGCGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACGAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCAGAACAACAGCTTTTATTAGACAATTTGTCAGATACTATGAGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATAGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTAGGGGCAACTCTCAGATAGCGTTTAGTAGCGGTGACCAGGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGTATATTTTGACTGAATCTTCTATATTTTCATCCTTTTAGAATTTAATGTGAAATGAATGCTCCATTTTAAGAAGCATATGTTTCAAGTTATTGTGTATCATGGAATGTTAGAACTCTGAACATCAACCCTGGTTCAAAAAAGTAAACCATACGAAAAAAACTTAATCAGAAAACACACGATATTTGATTACAAAGTTTGGCCAATTATTCCACGCCTCGACTGTAAAGCGCTGCAGTATCTTTCTGTTAGCACTGAAATTTTAGGGTATACAGGATGGAAGCTGAGTCACCTGCTTCCTTATCAGTAAACCAGGAGTTGTAAGTTTGTAACCAACAGAATGAAATCTGGGGGAGGGGGGATGCTCCATATCACACTTAATTTGCTATAGGGGAGTGAAACAGTGGAACAAAAGCCTTGATTTATCTTTTAACTTTGTAACTTCCTTTTGTTGCTATTTTTAATGTATTTTGGAACCATGCCTTTTAACATTTGTAGTAATTTTTCTTATAGGCAACAAGTGGTTCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCTGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAAAATTGGGGGTGAGACACACAAGACAAACTCAACATATTTGTGAAAATTTCATTTATATTTATTATTAACTCAGCTTATTATTTTGGGTTGTGTTGGAAATTTAGAGTTGACCCATTGAGGGTGTGAGGGTTGGTCCATCATAAGTTTAAGAGTTGCAATTTTGTTATGTTAGAACAGCAAATCCTGCTCTAAGTAAACATATAAAATCACACAAGACACAAACGATTGATAACGGAGTTCAGCCAATTTTGCTTACGTCTCTGACGAAAAGTGCTTGTTGCGCTTTCAGCTCCACTTGCTCCGCATCTGCCCACTTATCTGTGAATAAGAGCCATACTCAACATATCCAAAAAGTCTTACCATTTGGACTCATACACTCTCCAATTCCAACTTATATACATTTTCACCAAGTTCATAACATCCTTGGTTGTTCATGATATTTTCTTAAGATTGACATTACCCTCTCACCTAGTTAATTCTTGTCAATAAAGACGAATTTGTTTTTAATTTTTAACAAACATTCATTCTTTAAACAGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTGAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGTTCAATCATCCAACAAATTGGTACGCATAATAAAACTCTCATGTTCCCTGAGAAAACCTCAGTACCTAAGTTGGAGGATGAAGATGTTCTTGTTTCTAATTCATGTGAGGCAGAATTGGAGAAAGACAATGCCATTCCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCTCTGTAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGTAGTTTGCATGATGTTGGCTCTCATGGTTCTTTTTCAATGATTGAACTTGGTTTGGAAGAAGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCGAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCAGGATCTCAAAGCATTGAGAACCAGAAGCACTCAAAAATCAAATCAATCTGTGTCGATAGTGAATCAAAATTCGGTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTCGATCCATCTGTAGGTTGTTTTCAACTCTATGAAGAAGTTGCAAAAAGATTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAGGTTTTGAGTGACATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA
Protein sequence

>MS.gene056401.t1

MEDQYSSKERGISLWTPFDSGMKSPLTSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYSPHDGLNLAEHINGPFFMTEIGGNYNGMDSSTSYDENVLLQEMETQLEFLDNNSNETNNNLDSQQNGSYDMCNYMISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDLILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCPGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSNNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHMTSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGIEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDQDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGTHNKTLMFPEKTSVPKLEDEDVLVSNSCEAELEKDNAIPVDCIEDSTTWLWTKTQDCPKQTSVDYVLEKEQDQCGLDNSSLHDVGSHGSFSMIELGLEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKIKSICVDSESKFGVKANYRGDTIRFKFDPSVGCFQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS