Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003892.t1 | XP_013456287.1 | 96.1 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.00E+00 | 1820.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003892.t1 | Q6C8F7 | 27.3 | 143 | 98 | 3 | 29 | 168 | 6 | 145 | 5.5e-08 | 61.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003892.t1 | A0A072UMN5 | 96.1 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.0e+00 | 1820.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene025598 | MS.gene003892 | PPI |
| MS.gene68267 | MS.gene003892 | PPI |
| MS.gene003892 | MS.gene54899 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003892.t1 | MTR_4g067110 | 96.095 | 973 | 38 | 0 | 1 | 973 | 1 | 973 | 0.0 | 1931 |
| MS.gene003892.t1 | MTR_2g098850 | 70.618 | 987 | 258 | 5 | 1 | 973 | 1 | 969 | 0.0 | 1410 |
| MS.gene003892.t1 | MTR_2g098850 | 69.807 | 987 | 246 | 5 | 1 | 973 | 1 | 949 | 0.0 | 1386 |
| MS.gene003892.t1 | MTR_4g039320 | 43.113 | 1060 | 484 | 23 | 1 | 973 | 1 | 1028 | 0.0 | 801 |
| MS.gene003892.t1 | MTR_7g091780 | 43.824 | 1020 | 490 | 20 | 2 | 973 | 6 | 990 | 0.0 | 783 |
| MS.gene003892.t1 | MTR_1g084090 | 33.333 | 1038 | 586 | 21 | 1 | 973 | 1 | 997 | 3.24e-177 | 541 |
| MS.gene003892.t1 | MTR_1g082810 | 48.315 | 89 | 46 | 0 | 49 | 137 | 11 | 99 | 1.10e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003892.t1 | AT1G05960 | 54.038 | 1003 | 410 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1002 |
| MS.gene003892.t1 | AT1G05960 | 54.038 | 1003 | 410 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1002 |
| MS.gene003892.t1 | AT1G05960 | 54.038 | 1003 | 410 | 14 | 1 | 973 | 1 | 982 | 0.0 | 1002 |
| MS.gene003892.t1 | AT1G05960 | 52.832 | 1024 | 411 | 15 | 1 | 973 | 1 | 1003 | 0.0 | 988 |
| MS.gene003892.t1 | AT2G41830 | 42.529 | 1044 | 504 | 23 | 2 | 973 | 6 | 1025 | 0.0 | 775 |
| MS.gene003892.t1 | AT2G41830 | 39.168 | 914 | 460 | 23 | 132 | 973 | 1 | 890 | 0.0 | 582 |
| MS.gene003892.t1 | AT5G21080 | 55.118 | 508 | 219 | 4 | 1 | 500 | 1 | 507 | 0.0 | 575 |
| MS.gene003892.t1 | AT5G21080 | 37.019 | 416 | 202 | 13 | 583 | 970 | 635 | 1018 | 1.47e-52 | 200 |
| MS.gene003892.t1 | AT5G26850 | 35.588 | 1020 | 569 | 21 | 1 | 972 | 1 | 980 | 0.0 | 553 |
| MS.gene003892.t1 | AT5G26850 | 35.588 | 1020 | 569 | 21 | 1 | 972 | 1 | 980 | 0.0 | 553 |
| MS.gene003892.t1 | AT5G26850 | 35.588 | 1020 | 569 | 21 | 1 | 972 | 1 | 980 | 0.0 | 553 |
| MS.gene003892.t1 | AT5G26850 | 35.588 | 1020 | 569 | 21 | 1 | 972 | 1 | 980 | 0.0 | 553 |
Find 219 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGGGATGCTTTAATTAT+TGG | 0.142650 | 4.4:-39458676 | None:intergenic |
| CTGACTCTTGTGGCAGGGAC+TGG | 0.143185 | 4.4:+39455464 | MS.gene003892:CDS |
| GTCTCTTGCTTTCTTCAATC+TGG | 0.151994 | 4.4:+39457082 | MS.gene003892:CDS |
| CTATCTTCTGTTGTCCATTT+TGG | 0.180959 | 4.4:+39455888 | MS.gene003892:CDS |
| AATGGGACCTCCATTGTTTA+TGG | 0.219448 | 4.4:+39459802 | MS.gene003892:CDS |
| AACTAACTGTTGAATATATC+AGG | 0.226689 | 4.4:-39458693 | None:intergenic |
| ATATGTTCAACTTACCTTCT+TGG | 0.226797 | 4.4:-39457982 | None:intergenic |
| CAGCCACAAATTATCCTTCT+TGG | 0.232775 | 4.4:-39455444 | None:intergenic |
| TCCTCTTTGGGAAATTCCTT+GGG | 0.238244 | 4.4:-39455401 | None:intergenic |
| CAGTGTGAGGCTCTTGTATC+AGG | 0.239099 | 4.4:+39460318 | MS.gene003892:CDS |
| GCGCCCCAATTCGTGTTTCT+TGG | 0.245582 | 4.4:-39456537 | None:intergenic |
| TGACTCTTGTGGCAGGGACT+GGG | 0.253799 | 4.4:+39455465 | MS.gene003892:CDS |
| AAGGCTTCAGTTGCAATAAT+TGG | 0.264420 | 4.4:+39456006 | MS.gene003892:CDS |
| GGGAAATTCCTTGGGGTGAT+TGG | 0.270431 | 4.4:-39455393 | None:intergenic |
| GCTTTCTTCAATCTGGGTTC+TGG | 0.272992 | 4.4:+39457089 | MS.gene003892:CDS |
| TGAAAGCTGCTGGATGTTAA+TGG | 0.286853 | 4.4:+39461119 | MS.gene003892:CDS |
| AGTTTCTCCTCTACCAATTA+AGG | 0.290332 | 4.4:+39460428 | MS.gene003892:CDS |
| TGTTAAAGAGCCGTCCTCTT+TGG | 0.296797 | 4.4:-39455414 | None:intergenic |
| CTGGGTTCTGGCAACATCTA+TGG | 0.302142 | 4.4:+39457101 | MS.gene003892:CDS |
| TAGCTGCAGTTTCCAGTATT+GGG | 0.304149 | 4.4:+39456076 | MS.gene003892:CDS |
| AATCAATGGTCATCTGAAAA+AGG | 0.312373 | 4.4:+39455719 | MS.gene003892:CDS |
| GTCCTCTTTGGGAAATTCCT+TGG | 0.314480 | 4.4:-39455402 | None:intergenic |
| CTCCCTCATGAGCATTTCAT+TGG | 0.314688 | 4.4:+39457958 | MS.gene003892:CDS |
| AAATTTACCTCATCAAAATC+TGG | 0.317492 | 4.4:-39459866 | None:intergenic |
| GACAGATTTCCACTTGGTTC+AGG | 0.319543 | 4.4:-39460004 | None:intergenic |
| AAAGGCTTGCTTGTATAATA+TGG | 0.324194 | 4.4:+39455625 | MS.gene003892:CDS |
| TACATACATGTTCAATTTAG+AGG | 0.325825 | 4.4:+39454862 | MS.gene003892:CDS |
| CCTCACACTGGTTCTTCATT+TGG | 0.326955 | 4.4:-39460305 | None:intergenic |
| TGCTGCTATTAAGTCACTTT+CGG | 0.330128 | 4.4:+39458950 | MS.gene003892:CDS |
| ATCCAAGTGCTTGACCAAAA+TGG | 0.334685 | 4.4:-39455902 | None:intergenic |
| TGAGCCAGTTGACACAGTTT+AGG | 0.340595 | 4.4:-39454893 | None:intergenic |
| CCAATTCGTGTTTCTTGGTC+AGG | 0.343176 | 4.4:-39456532 | None:intergenic |
| TGTCAACTGGCTCAAGAAAT+CGG | 0.347746 | 4.4:+39454902 | MS.gene003892:CDS |
| GAAGCGTTACAAGAAGTTAT+TGG | 0.348759 | 4.4:+39452677 | MS.gene003892:CDS |
| TTGTAATATACACATTTCTA+AGG | 0.349572 | 4.4:-39456136 | None:intergenic |
| GTGTGGTTAGGTGCGTTTCA+TGG | 0.349676 | 4.4:+39455091 | MS.gene003892:intron |
| ATAGATCATGTTAGTGACTT+TGG | 0.359929 | 4.4:+39455343 | MS.gene003892:intron |
| GTTAAAGAGCCGTCCTCTTT+GGG | 0.361240 | 4.4:-39455413 | None:intergenic |
| TGGGGTGATTGGAGCTAGAT+TGG | 0.362239 | 4.4:-39455382 | None:intergenic |
| AATTCTCAACGGATTCTTAG+AGG | 0.362893 | 4.4:-39453434 | None:intergenic |
| TAAAATTTAAAATAGATAGA+TGG | 0.365905 | 4.4:+39454839 | MS.gene003892:intron |
| CTTGTATAATATGGTCAAAC+TGG | 0.366128 | 4.4:+39455634 | MS.gene003892:CDS |
| TCCACAGACATCCAGTTACT+TGG | 0.369843 | 4.4:+39457907 | MS.gene003892:intron |
| TGTGGCTTCGGCAGCTTTGA+TGG | 0.372597 | 4.4:+39459967 | MS.gene003892:CDS |
| GAAAAGCTGTAAATACGATA+TGG | 0.377200 | 4.4:-39456757 | None:intergenic |
| TAGGGGCAGAACAGATCAAT+AGG | 0.383284 | 4.4:+39456677 | MS.gene003892:CDS |
| TCTTACGAAAGCCAAGTAAC+TGG | 0.383620 | 4.4:-39457918 | None:intergenic |
| TCTCTTGCTTTCTTCAATCT+GGG | 0.383800 | 4.4:+39457083 | MS.gene003892:CDS |
| TGGTTCTTCATTTGGTCATA+AGG | 0.384205 | 4.4:-39460297 | None:intergenic |
| TGTGCAGACACTGGAGTATT+CGG | 0.387464 | 4.4:+39460970 | MS.gene003892:intron |
| AGCTTTCAAGAATTTATCAT+AGG | 0.388126 | 4.4:-39461104 | None:intergenic |
| CCGACCTCATTAAGCACTTA+AGG | 0.388667 | 4.4:+39456037 | MS.gene003892:CDS |
| GTCAACTGGCTCAAGAAATC+GGG | 0.392941 | 4.4:+39454903 | MS.gene003892:CDS |
| GAATCAGAGAAGATAATCTA+TGG | 0.396697 | 4.4:+39458909 | MS.gene003892:CDS |
| TCATAAGGTACAGGATTTGC+AGG | 0.399980 | 4.4:-39460282 | None:intergenic |
| GGGAACTCAATCTGAGCAAC+TGG | 0.401860 | 4.4:-39459845 | None:intergenic |
| TTAGCTGCAGTTTCCAGTAT+TGG | 0.405516 | 4.4:+39456075 | MS.gene003892:CDS |
| GATAAATTCTTGAAAGCTGC+TGG | 0.405792 | 4.4:+39461109 | MS.gene003892:CDS |
| CCTGACCAAGAAACACGAAT+TGG | 0.408852 | 4.4:+39456532 | MS.gene003892:CDS |
| AATTGATGAAATAAAGCATC+AGG | 0.411056 | 4.4:-39456490 | None:intergenic |
| AGGACCCATCCTTGATTTGA+TGG | 0.413478 | 4.4:+39456253 | MS.gene003892:CDS |
| GTAGTTTATTAGAGATTGTT+CGG | 0.415919 | 4.4:+39454399 | MS.gene003892:CDS |
| CTGACCAAGAAACACGAATT+GGG | 0.416802 | 4.4:+39456533 | MS.gene003892:CDS |
| ATACTCGTCATTCCCAATAC+TGG | 0.419702 | 4.4:-39456088 | None:intergenic |
| GATTAACGCTTAAAATCGTC+AGG | 0.425004 | 4.4:-39460057 | None:intergenic |
| TATTCCTAAACTGTGTCAAC+TGG | 0.426596 | 4.4:+39454889 | MS.gene003892:CDS |
| TTGTTTCTAGATTGTGGCTT+CGG | 0.428600 | 4.4:+39459955 | MS.gene003892:intron |
| GATTTGCGTAATGAAGTCTT+TGG | 0.428917 | 4.4:+39453747 | MS.gene003892:CDS |
| TTTCCGATGCTCTAAATCTT+GGG | 0.429222 | 4.4:+39456776 | MS.gene003892:CDS |
| CTGCTAAAGATCCGGCATAT+TGG | 0.430399 | 4.4:+39455600 | MS.gene003892:CDS |
| ACAGATGAAATCAGGATCAT+AGG | 0.437523 | 4.4:+39454443 | MS.gene003892:CDS |
| TCATCAATTGCTCCTGGTGA+TGG | 0.438079 | 4.4:+39456504 | MS.gene003892:CDS |
| GGTACAGGATTTGCAGGAAT+GGG | 0.439740 | 4.4:-39460276 | None:intergenic |
| CTCAGGTAAATTGCCTGTCT+TGG | 0.441203 | 4.4:-39458647 | None:intergenic |
| TTGAGCTTGTCGATGATGTC+AGG | 0.442296 | 4.4:+39458868 | MS.gene003892:CDS |
| TTAATTATTGGAATTAGCTC+AGG | 0.445901 | 4.4:-39458664 | None:intergenic |
| ATCGCATCTTTCAGTGGACT+TGG | 0.449918 | 4.4:+39455121 | MS.gene003892:CDS |
| TTCATTTGGTCATAAGGTAC+AGG | 0.451138 | 4.4:-39460291 | None:intergenic |
| CCCATTGGATATGCATCATC+AGG | 0.452179 | 4.4:-39459785 | None:intergenic |
| GACTCTTGTGGCAGGGACTG+GGG | 0.454897 | 4.4:+39455466 | MS.gene003892:CDS |
| CAAAATGGACAACAGAAGAT+AGG | 0.456384 | 4.4:-39455887 | None:intergenic |
| GCTTTGATGGACGAAGAGAC+TGG | 0.457425 | 4.4:+39459980 | MS.gene003892:CDS |
| TTGTGGCTGACTCTTGTGGC+AGG | 0.467015 | 4.4:+39455458 | MS.gene003892:CDS |
| CTTATATTCTCTGCCAAGAC+AGG | 0.472578 | 4.4:+39458634 | MS.gene003892:CDS |
| AAAATTCTTATCGTCATGTA+AGG | 0.472661 | 4.4:+39453800 | MS.gene003892:CDS |
| TTCTTGTGATATGACACGTT+AGG | 0.474759 | 4.4:-39456368 | None:intergenic |
| AAACTCGAACAGATGAAATC+AGG | 0.476249 | 4.4:+39454435 | MS.gene003892:CDS |
| GAACAACAGGTTGGGGATGT+AGG | 0.477228 | 4.4:+39456233 | MS.gene003892:intron |
| AACTTCTTGTAACGCTTCAC+CGG | 0.477865 | 4.4:-39452672 | None:intergenic |
| TTTATTTCATCAATTGCTCC+TGG | 0.483167 | 4.4:+39456498 | MS.gene003892:CDS |
| GTCACTTTCGGCCGTAGAGT+TGG | 0.486619 | 4.4:+39458962 | MS.gene003892:CDS |
| TGTGGTTAGGTGCGTTTCAT+GGG | 0.486827 | 4.4:+39455092 | MS.gene003892:intron |
| GCTTTCAAGAATTTATCATA+GGG | 0.487556 | 4.4:-39461103 | None:intergenic |
| TCGTGCTAGCTCAAGACAAC+CGG | 0.489738 | 4.4:+39452653 | MS.gene003892:CDS |
| GATTGTTGTTCTTGCTACAA+TGG | 0.492747 | 4.4:-39456306 | None:intergenic |
| CGTTAATCAACTCTTAGAAT+CGG | 0.495438 | 4.4:+39460072 | MS.gene003892:CDS |
| AATTTATCATAGGGGCTGGC+AGG | 0.496112 | 4.4:-39461094 | None:intergenic |
| CTTGGAACAAATATGTTACA+AGG | 0.501550 | 4.4:+39453725 | MS.gene003892:CDS |
| GGTCAGGATGAGCCATCACC+AGG | 0.502339 | 4.4:-39456516 | None:intergenic |
| CATCCTTGATTTGATGGCTG+TGG | 0.503859 | 4.4:+39456259 | MS.gene003892:CDS |
| CAAGAATTTATCATAGGGGC+TGG | 0.506399 | 4.4:-39461098 | None:intergenic |
| GCTCTACGTCTCCGTTCAGC+TGG | 0.506463 | 4.4:+39454938 | MS.gene003892:CDS |
| TTTCGTAAGATGTTTCCAAC+TGG | 0.507563 | 4.4:+39457931 | MS.gene003892:CDS |
| TATGCAGATTACTGATAACT+TGG | 0.508073 | 4.4:+39453707 | MS.gene003892:intron |
| AGTGACTTTGGAGAATTACA+TGG | 0.508157 | 4.4:+39455355 | MS.gene003892:CDS |
| TCATCGACAAGCTCAAGAAA+AGG | 0.509001 | 4.4:-39458861 | None:intergenic |
| TCTTGTGATATGACACGTTA+GGG | 0.510444 | 4.4:-39456367 | None:intergenic |
| TGTCGATGATGTCAGGCTAC+AGG | 0.515098 | 4.4:+39458875 | MS.gene003892:CDS |
| CATAAAGAAACAACTTGCAC+AGG | 0.518963 | 4.4:+39459754 | MS.gene003892:CDS |
| CAGGGATACTGCTAAAGATC+CGG | 0.519659 | 4.4:+39455592 | MS.gene003892:intron |
| GCCATGGCCTCAAAATTCGC+CGG | 0.523947 | 4.4:-39457132 | None:intergenic |
| CACAGCCATCAAATCAAGGA+TGG | 0.524628 | 4.4:-39456258 | None:intergenic |
| CCTGATGATGCATATCCAAT+GGG | 0.525211 | 4.4:+39459785 | MS.gene003892:CDS |
| CCATGGCCTCAAAATTCGCC+GGG | 0.527666 | 4.4:-39457131 | None:intergenic |
| AGGTACAGGATTTGCAGGAA+TGG | 0.529133 | 4.4:-39460277 | None:intergenic |
| CAGTCTGACAGATTTCCACT+TGG | 0.530024 | 4.4:-39460010 | None:intergenic |
| GTTAGACCATAAAACAATGA+TGG | 0.531776 | 4.4:+39456606 | MS.gene003892:CDS |
| TCCTGATGATGCATATCCAA+TGG | 0.532704 | 4.4:+39459784 | MS.gene003892:CDS |
| ATAATATTAATCTGAAGGAT+AGG | 0.533027 | 4.4:-39455946 | None:intergenic |
| CAGCAGAGGTTGCCACAGGC+GGG | 0.533831 | 4.4:-39452615 | None:intergenic |
| TTTATTGTTCACTCGTTCAA+AGG | 0.535348 | 4.4:+39457173 | MS.gene003892:CDS |
| TCAGAGCCTCTCCATTCAGC+AGG | 0.536677 | 4.4:+39456645 | MS.gene003892:CDS |
| ATAAACAATGGAGGTCCCAT+TGG | 0.537727 | 4.4:-39459800 | None:intergenic |
| CTTTGATGGACGAAGAGACT+GGG | 0.537961 | 4.4:+39459981 | MS.gene003892:CDS |
| AGGAGGGTTGTGCCCGCCTG+TGG | 0.538546 | 4.4:+39452603 | MS.gene003892:CDS |
| ACTACTGCCCCTCCTTCCAC+AGG | 0.538901 | 4.4:-39456703 | None:intergenic |
| AATTTACCTCATCAAAATCT+GGG | 0.542840 | 4.4:-39459865 | None:intergenic |
| AACATCTATGGACAATGGCC+CGG | 0.549815 | 4.4:+39457113 | MS.gene003892:CDS |
| ATACTGACCTTAATTGGTAG+AGG | 0.550402 | 4.4:-39460435 | None:intergenic |
| ACATACATGTTCAATTTAGA+GGG | 0.550480 | 4.4:+39454863 | MS.gene003892:CDS |
| AGCATTTCATTGGACCAAGA+AGG | 0.553364 | 4.4:+39457968 | MS.gene003892:CDS |
| TCTCCAAGAAGGATAATTTG+TGG | 0.557351 | 4.4:+39455441 | MS.gene003892:CDS |
| CCTCTTTGGGAAATTCCTTG+GGG | 0.558009 | 4.4:-39455400 | None:intergenic |
| ACACCACAGCCATCAAATCA+AGG | 0.559488 | 4.4:-39456262 | None:intergenic |
| TTCGGAAGGCGATCTGAAGT+TGG | 0.560737 | 4.4:+39460988 | MS.gene003892:CDS |
| CTAATGCTCTAGTCTCCTGC+TGG | 0.560946 | 4.4:-39460380 | None:intergenic |
| GTGGTAGTCTCAAAGAATGT+TGG | 0.562576 | 4.4:-39461072 | None:intergenic |
| TTTGGAAACCGCACGGCAAG+TGG | 0.564174 | 4.4:+39460245 | MS.gene003892:CDS |
| TTTCCCAAGATTTAGAGCAT+CGG | 0.566217 | 4.4:-39456779 | None:intergenic |
| TGTGGCTGACTCTTGTGGCA+GGG | 0.566984 | 4.4:+39455459 | MS.gene003892:CDS |
| TAATATGGTCAAACTGGCAA+GGG | 0.567973 | 4.4:+39455640 | MS.gene003892:CDS |
| CTTGAGCTAGCACGAAGAGC+AGG | 0.568508 | 4.4:-39452645 | None:intergenic |
| ATAGGAAACCTGTGGAAGGA+GGG | 0.569341 | 4.4:+39456695 | MS.gene003892:CDS |
| TTTAACAGATATCTCCAAGA+AGG | 0.573391 | 4.4:+39455430 | MS.gene003892:CDS |
| TAAAACAATGATGGCTGAGA+AGG | 0.574833 | 4.4:+39456615 | MS.gene003892:CDS |
| ATAATATGGTCAAACTGGCA+AGG | 0.575219 | 4.4:+39455639 | MS.gene003892:CDS |
| TAATTTGTGGCTGACTCTTG+TGG | 0.576163 | 4.4:+39455454 | MS.gene003892:CDS |
| TGTTGATAATATTAATCTGA+AGG | 0.578916 | 4.4:-39455951 | None:intergenic |
| CAAGCCTTTGACCAATATGC+CGG | 0.579481 | 4.4:-39455611 | None:intergenic |
| GAATCCGTTGAGAATTCCTA+AGG | 0.579527 | 4.4:+39453441 | MS.gene003892:CDS |
| CTTCTTATCATCCAACTCTA+CGG | 0.583488 | 4.4:-39458973 | None:intergenic |
| GCAACTGGAGAACATGTCCT+TGG | 0.584551 | 4.4:-39459830 | None:intergenic |
| AAAGCAAGAGACTCACTTGG+TGG | 0.585481 | 4.4:-39457071 | None:intergenic |
| TATAAGCATGTACGATGCCA+AGG | 0.585994 | 4.4:-39458617 | None:intergenic |
| AGCTTTCCTGCTGAATGGAG+AGG | 0.587054 | 4.4:-39456651 | None:intergenic |
| AAAAGAGACCTCCTGCGAGA+TGG | 0.588416 | 4.4:-39458592 | None:intergenic |
| AATAGGAAACCTGTGGAAGG+AGG | 0.593531 | 4.4:+39456694 | MS.gene003892:CDS |
| TAAAGCAATGCTAAAAGTGT+GGG | 0.594413 | 4.4:-39457154 | None:intergenic |
| AATGCTAAAAGTGTGGGCCA+TGG | 0.594968 | 4.4:-39457148 | None:intergenic |
| ACTAACTGTTGAATATATCA+GGG | 0.596910 | 4.4:-39458692 | None:intergenic |
| GGTCCAATGAAATGCTCATG+AGG | 0.596995 | 4.4:-39457961 | None:intergenic |
| GAGGTTTACAACCATCTCGC+AGG | 0.597698 | 4.4:+39458581 | MS.gene003892:CDS |
| AGTGTGAGGCTCTTGTATCA+GGG | 0.600633 | 4.4:+39460319 | MS.gene003892:CDS |
| ACAGCAGAGGTTGCCACAGG+CGG | 0.601288 | 4.4:-39452616 | None:intergenic |
| ATAAAGCAATGCTAAAAGTG+TGG | 0.601535 | 4.4:-39457155 | None:intergenic |
| CCTTAAGTGCTTAATGAGGT+CGG | 0.601671 | 4.4:-39456037 | None:intergenic |
| TGAATGGAGAGGCTCTGACT+TGG | 0.603434 | 4.4:-39456640 | None:intergenic |
| CAGTAGTTGATGTCAGCAGT+AGG | 0.605929 | 4.4:+39456719 | MS.gene003892:CDS |
| GTGATATGACACGTTAGGGA+TGG | 0.608957 | 4.4:-39456363 | None:intergenic |
| TGTCTATAGTCATACGAACA+CGG | 0.609919 | 4.4:-39461049 | None:intergenic |
| CTTGGTGTCTCCATAAACAA+TGG | 0.611978 | 4.4:-39459812 | None:intergenic |
| TAGGAAACCTGTGGAAGGAG+GGG | 0.615399 | 4.4:+39456696 | MS.gene003892:CDS |
| AGCTGTAAATACGATATGGA+AGG | 0.615523 | 4.4:-39456753 | None:intergenic |
| TGACCAAGAAACACGAATTG+GGG | 0.618022 | 4.4:+39456534 | MS.gene003892:CDS |
| AACACAGCAGAGGTTGCCAC+AGG | 0.618662 | 4.4:-39452619 | None:intergenic |
| GTGACTTTGGAGAATTACAT+GGG | 0.619470 | 4.4:+39455356 | MS.gene003892:CDS |
| TTATCATAGGGGCTGGCAGG+TGG | 0.621286 | 4.4:-39461091 | None:intergenic |
| ACTACAAGCTCTATCCTACA+TGG | 0.622795 | 4.4:+39454961 | MS.gene003892:CDS |
| ATTGATGAAATAAAGCATCA+GGG | 0.624457 | 4.4:-39456489 | None:intergenic |
| TAACGTGTCATATCACAAGA+AGG | 0.624982 | 4.4:+39456370 | MS.gene003892:CDS |
| AGATCCGGCATATTGGTCAA+AGG | 0.627533 | 4.4:+39455607 | MS.gene003892:CDS |
| ACAGCCATCAAATCAAGGAT+GGG | 0.630952 | 4.4:-39456257 | None:intergenic |
| AACTGGGGAGAAAACAGAGA+TGG | 0.631697 | 4.4:-39456586 | None:intergenic |
| AAGGAATTTCCCAAAGAGGA+CGG | 0.633587 | 4.4:+39455404 | MS.gene003892:CDS |
| TGAGCAATCGCATCTTTCAG+TGG | 0.635171 | 4.4:+39455115 | MS.gene003892:CDS |
| GAAAACCTCACCTGATTACG+AGG | 0.636182 | 4.4:-39452711 | None:intergenic |
| ATCAATAGGAAACCTGTGGA+AGG | 0.638646 | 4.4:+39456691 | MS.gene003892:CDS |
| TATATTACAACTTTCAAACA+AGG | 0.638772 | 4.4:+39456149 | MS.gene003892:CDS |
| ACCTCCTTAAGTGCTTAATG+AGG | 0.638798 | 4.4:-39456041 | None:intergenic |
| CTTTCAAGAATTTATCATAG+GGG | 0.640709 | 4.4:-39461102 | None:intergenic |
| TTTACCTTAGGAATTCTCAA+CGG | 0.641215 | 4.4:-39453445 | None:intergenic |
| CCCCAAGGAATTTCCCAAAG+AGG | 0.642073 | 4.4:+39455400 | MS.gene003892:CDS |
| AGGACAAAGCAGTACCATGT+AGG | 0.642126 | 4.4:-39454975 | None:intergenic |
| GTCCAATGAAATGCTCATGA+GGG | 0.642966 | 4.4:-39457960 | None:intergenic |
| GAGCTTGTAGTCCAGCTGAA+CGG | 0.644770 | 4.4:-39454949 | None:intergenic |
| ATCTAGCTCCAATCACCCCA+AGG | 0.646399 | 4.4:+39455385 | MS.gene003892:CDS |
| ACAGATCAATAGGAAACCTG+TGG | 0.646808 | 4.4:+39456687 | MS.gene003892:CDS |
| GTACAGGATTTGCAGGAATG+GGG | 0.647087 | 4.4:-39460275 | None:intergenic |
| GTCTATAGTCATACGAACAC+GGG | 0.648189 | 4.4:-39461048 | None:intergenic |
| ATAAAGAAACAACTTGCACA+GGG | 0.651476 | 4.4:+39459755 | MS.gene003892:CDS |
| CTGGCAACATCTATGGACAA+TGG | 0.655778 | 4.4:+39457108 | MS.gene003892:CDS |
| GAGCAGGACAAACACAGCAG+AGG | 0.659420 | 4.4:-39452629 | None:intergenic |
| AAGAAAGCAAGAGACTCACT+TGG | 0.659869 | 4.4:-39457074 | None:intergenic |
| CAAATATTCAAAATTACCTG+AGG | 0.662510 | 4.4:+39459028 | MS.gene003892:CDS |
| CTGATACAAGAGCCTCACAC+TGG | 0.662972 | 4.4:-39460317 | None:intergenic |
| CAGACACTGGAGTATTCGGA+AGG | 0.663133 | 4.4:+39460974 | MS.gene003892:intron |
| TCAACTGGCTCAAGAAATCG+GGG | 0.666428 | 4.4:+39454904 | MS.gene003892:CDS |
| GTTTACAACCATCTCGCAGG+AGG | 0.666560 | 4.4:+39458584 | MS.gene003892:CDS |
| AGGTTATCGACAGAGAGCAA+TGG | 0.667525 | 4.4:-39460037 | None:intergenic |
| ACCTCATTAAGCACTTAAGG+AGG | 0.670614 | 4.4:+39456040 | MS.gene003892:CDS |
| GAAACTAGCCACTTGCCGTG+CGG | 0.674563 | 4.4:-39460253 | None:intergenic |
| GAGACTGGGCCTGAACCAAG+TGG | 0.675352 | 4.4:+39459995 | MS.gene003892:CDS |
| GGTGTCTCCATAAACAATGG+AGG | 0.682652 | 4.4:-39459809 | None:intergenic |
| TCATGAGGGAGAATGCCAGT+TGG | 0.689364 | 4.4:-39457946 | None:intergenic |
| CCAAATGAAGAACCAGTGTG+AGG | 0.696233 | 4.4:+39460305 | MS.gene003892:CDS |
| CATTGTTTATGGAGACACCA+AGG | 0.708806 | 4.4:+39459813 | MS.gene003892:CDS |
| AAAACCTCACCTGATTACGA+GGG | 0.729452 | 4.4:-39452710 | None:intergenic |
| CAAGGGAAGCTACAACTCTG+CGG | 0.734909 | 4.4:+39455657 | MS.gene003892:CDS |
| TAAAGAAACAACTTGCACAG+GGG | 0.750879 | 4.4:+39459756 | MS.gene003892:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39452588 | 39461138 | 39452588 | ID=MS.gene003892 |
| chr4.4 | mRNA | 39452588 | 39461138 | 39452588 | ID=MS.gene003892.t1;Parent=MS.gene003892 |
| chr4.4 | exon | 39452588 | 39452722 | 39452588 | ID=MS.gene003892.t1.exon1;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39452588 | 39452722 | 39452588 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39453388 | 39453462 | 39453388 | ID=MS.gene003892.t1.exon2;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39453388 | 39453462 | 39453388 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39453714 | 39453829 | 39453714 | ID=MS.gene003892.t1.exon3;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39453714 | 39453829 | 39453714 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39454385 | 39454499 | 39454385 | ID=MS.gene003892.t1.exon4;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39454385 | 39454499 | 39454385 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39454854 | 39454982 | 39454854 | ID=MS.gene003892.t1.exon5;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39454854 | 39454982 | 39454854 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39455101 | 39455148 | 39455101 | ID=MS.gene003892.t1.exon6;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39455101 | 39455148 | 39455101 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39455347 | 39455501 | 39455347 | ID=MS.gene003892.t1.exon7;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39455347 | 39455501 | 39455347 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39455595 | 39455791 | 39455595 | ID=MS.gene003892.t1.exon8;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39455595 | 39455791 | 39455595 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39455878 | 39456170 | 39455878 | ID=MS.gene003892.t1.exon9;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39455878 | 39456170 | 39455878 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39456242 | 39456391 | 39456242 | ID=MS.gene003892.t1.exon10;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39456242 | 39456391 | 39456242 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39456484 | 39456804 | 39456484 | ID=MS.gene003892.t1.exon11;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39456484 | 39456804 | 39456484 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39457045 | 39457194 | 39457045 | ID=MS.gene003892.t1.exon12;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39457045 | 39457194 | 39457045 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39457914 | 39457989 | 39457914 | ID=MS.gene003892.t1.exon13;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39457914 | 39457989 | 39457914 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39458581 | 39458708 | 39458581 | ID=MS.gene003892.t1.exon14;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39458581 | 39458708 | 39458581 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39458855 | 39459049 | 39458855 | ID=MS.gene003892.t1.exon15;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39458855 | 39459049 | 39458855 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39459740 | 39459880 | 39459740 | ID=MS.gene003892.t1.exon16;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39459740 | 39459880 | 39459740 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39459965 | 39460093 | 39459965 | ID=MS.gene003892.t1.exon17;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39459965 | 39460093 | 39459965 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39460243 | 39460449 | 39460243 | ID=MS.gene003892.t1.exon18;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39460243 | 39460449 | 39460243 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| chr4.4 | exon | 39460977 | 39461138 | 39460977 | ID=MS.gene003892.t1.exon19;Parent=MS.gene003892.t1 |
| chr4.4 | CDS | 39460977 | 39461138 | 39460977 | ID=cds.MS.gene003892.t1;Parent=MS.gene003892.t1 |
| Gene Sequence |
| Protein sequence |
