Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68267.t1 | XP_003605757.1 | 97.7 | 1028 | 23 | 1 | 1 | 1027 | 1 | 1028 | 0.00E+00 | 1878.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68267.t1 | Q6ZQ18 | 24.2 | 442 | 287 | 15 | 15 | 442 | 4 | 411 | 1.9e-19 | 99.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68267.t1 | G7JTI7 | 97.7 | 1028 | 23 | 1 | 1 | 1027 | 1 | 1028 | 0.0e+00 | 1878.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene056371 | MS.gene68267 | PPI |
| MS.gene98718 | MS.gene68267 | PPI |
| MS.gene68267 | MS.gene003892 | PPI |
| MS.gene28347 | MS.gene68267 | PPI |
| MS.gene68267 | MS.gene85284 | PPI |
| MS.gene85609 | MS.gene68267 | PPI |
| MS.gene85602 | MS.gene68267 | PPI |
| MS.gene032166 | MS.gene68267 | PPI |
| MS.gene032165 | MS.gene68267 | PPI |
| MS.gene68267 | MS.gene052019 | PPI |
| MS.gene54564 | MS.gene68267 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68267.t1 | MTR_4g039320 | 97.568 | 1028 | 24 | 1 | 1 | 1027 | 1 | 1028 | 0.0 | 2074 |
| MS.gene68267.t1 | MTR_7g091780 | 51.326 | 1056 | 411 | 18 | 3 | 1027 | 7 | 990 | 0.0 | 967 |
| MS.gene68267.t1 | MTR_4g067110 | 44.805 | 1049 | 481 | 20 | 1 | 1027 | 1 | 973 | 0.0 | 828 |
| MS.gene68267.t1 | MTR_2g098850 | 43.667 | 1058 | 476 | 17 | 1 | 1027 | 1 | 969 | 0.0 | 811 |
| MS.gene68267.t1 | MTR_2g098850 | 55.019 | 518 | 214 | 2 | 1 | 499 | 1 | 518 | 0.0 | 617 |
| MS.gene68267.t1 | MTR_2g098850 | 38.702 | 416 | 228 | 10 | 619 | 1027 | 554 | 949 | 2.25e-62 | 230 |
| MS.gene68267.t1 | MTR_1g084090 | 34.167 | 1080 | 575 | 27 | 1 | 1027 | 1 | 997 | 1.12e-180 | 552 |
| MS.gene68267.t1 | MTR_1g082810 | 50.000 | 98 | 49 | 0 | 40 | 137 | 2 | 99 | 1.36e-27 | 107 |
| MS.gene68267.t1 | MTR_1g082815 | 46.875 | 64 | 34 | 0 | 144 | 207 | 1 | 64 | 7.59e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68267.t1 | AT5G21080 | 56.280 | 1059 | 387 | 19 | 1 | 1024 | 1 | 1018 | 0.0 | 1096 |
| MS.gene68267.t1 | AT2G41830 | 50.609 | 1067 | 439 | 13 | 2 | 1027 | 6 | 1025 | 0.0 | 1008 |
| MS.gene68267.t1 | AT2G41830 | 48.559 | 937 | 394 | 13 | 132 | 1027 | 1 | 890 | 0.0 | 811 |
| MS.gene68267.t1 | AT1G05960 | 50.984 | 508 | 230 | 4 | 1 | 493 | 1 | 504 | 3.29e-177 | 543 |
| MS.gene68267.t1 | AT1G05960 | 36.730 | 422 | 226 | 13 | 620 | 1027 | 588 | 982 | 1.14e-56 | 213 |
| MS.gene68267.t1 | AT1G05960 | 50.984 | 508 | 230 | 4 | 1 | 493 | 1 | 504 | 3.29e-177 | 543 |
| MS.gene68267.t1 | AT1G05960 | 36.730 | 422 | 226 | 13 | 620 | 1027 | 588 | 982 | 1.14e-56 | 213 |
| MS.gene68267.t1 | AT1G05960 | 50.984 | 508 | 230 | 4 | 1 | 493 | 1 | 504 | 3.29e-177 | 543 |
| MS.gene68267.t1 | AT1G05960 | 36.730 | 422 | 226 | 13 | 620 | 1027 | 588 | 982 | 1.14e-56 | 213 |
| MS.gene68267.t1 | AT5G26850 | 33.585 | 1060 | 590 | 25 | 1 | 1026 | 1 | 980 | 1.51e-174 | 536 |
| MS.gene68267.t1 | AT5G26850 | 33.585 | 1060 | 590 | 25 | 1 | 1026 | 1 | 980 | 1.51e-174 | 536 |
| MS.gene68267.t1 | AT5G26850 | 33.585 | 1060 | 590 | 25 | 1 | 1026 | 1 | 980 | 1.51e-174 | 536 |
| MS.gene68267.t1 | AT5G26850 | 33.585 | 1060 | 590 | 25 | 1 | 1026 | 1 | 980 | 1.51e-174 | 536 |
| MS.gene68267.t1 | AT1G05960 | 48.771 | 529 | 231 | 5 | 1 | 493 | 1 | 525 | 7.66e-172 | 530 |
| MS.gene68267.t1 | AT1G05960 | 36.730 | 422 | 226 | 13 | 620 | 1027 | 609 | 1003 | 1.21e-56 | 213 |
Find 211 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGCACTCTTTGAGAAAT+TGG | 0.142400 | 4.3:-61452470 | MS.gene68267:CDS |
| GATGATGACATTCCCGTTTC+TGG | 0.176627 | 4.3:-61450090 | MS.gene68267:CDS |
| GCTGAGTGTTGATGACATTT+TGG | 0.183306 | 4.3:-61450010 | MS.gene68267:CDS |
| ACAATATCAAGTTGCATATT+AGG | 0.203881 | 4.3:+61453288 | None:intergenic |
| GGAAATCTTCTGTTGCTTTC+CGG | 0.219003 | 4.3:+61449705 | None:intergenic |
| ATCAAGGAAGATTCTCAAAA+TGG | 0.237376 | 4.3:-61453815 | MS.gene68267:CDS |
| TGGAGAGCCATTTCTTTATA+TGG | 0.242690 | 4.3:+61449745 | None:intergenic |
| TAAATGTTTGTTACATTTGC+AGG | 0.259482 | 4.3:+61450433 | None:intergenic |
| AATTTCTTGTAACGTTTAAT+AGG | 0.260530 | 4.3:+61456488 | None:intergenic |
| TTCAATCTATTCATCATAGA+AGG | 0.267853 | 4.3:+61452295 | None:intergenic |
| ATGCCACGAACCCTGGATTT+TGG | 0.270130 | 4.3:-61453640 | MS.gene68267:CDS |
| TCAGGTTGTTTCGGTTGTTT+TGG | 0.277392 | 4.3:-61453852 | MS.gene68267:intron |
| CATTACTTGCCAATTCATTC+AGG | 0.289885 | 4.3:-61449663 | MS.gene68267:CDS |
| GGATGATGAGGACGCTTTAA+AGG | 0.298782 | 4.3:-61450533 | MS.gene68267:CDS |
| TGTTTCACAGGTTTGGTTCA+TGG | 0.302837 | 4.3:-61454445 | MS.gene68267:intron |
| AAGAGTTTGCATACTAAATA+TGG | 0.304713 | 4.3:-61453615 | MS.gene68267:CDS |
| CCTCGTACAGTTAACAATTA+AGG | 0.308024 | 4.3:-61453085 | MS.gene68267:intron |
| TTGCTGATCTTACGATCATT+AGG | 0.317253 | 4.3:+61456300 | None:intergenic |
| ATCAAGGTGCTTGACTAAAA+TGG | 0.317663 | 4.3:+61453332 | None:intergenic |
| TGACATTCCCGTTTCTGGTT+TGG | 0.328957 | 4.3:-61450085 | MS.gene68267:CDS |
| CTCCCATTTGTTGAGCTAGA+TGG | 0.335829 | 4.3:+61454660 | None:intergenic |
| ACAGAAGATTTCCACTTTCA+TGG | 0.338277 | 4.3:-61449695 | MS.gene68267:CDS |
| AGCATCTTCTTCAACAATTA+CGG | 0.339473 | 4.3:+61452228 | None:intergenic |
| TCATCATCAATAGTAAATAA+TGG | 0.344171 | 4.3:+61450105 | None:intergenic |
| AAGTTGTCATTTGTATTTAT+AGG | 0.344443 | 4.3:-61455726 | MS.gene68267:CDS |
| GGTTGATCCTTTCCTGCAAC+TGG | 0.351301 | 4.3:-61450626 | MS.gene68267:CDS |
| GGATGATAAACATTCTGATA+TGG | 0.355282 | 4.3:-61450233 | MS.gene68267:intron |
| GTACAGCATTTGCGAGCTTC+CGG | 0.358129 | 4.3:-61454626 | MS.gene68267:CDS |
| TGCTGTCATTAACCAGTTGC+AGG | 0.367595 | 4.3:+61450614 | None:intergenic |
| TCTTGAGCAAAGATGTTATA+AGG | 0.374255 | 4.3:-61455779 | MS.gene68267:CDS |
| CGATTCATTTGACTGGCTTT+CGG | 0.377099 | 4.3:+61450489 | None:intergenic |
| GCGTTATTTCGCGTAACATT+TGG | 0.377850 | 4.3:-61456568 | MS.gene68267:CDS |
| TCTCTTGATGATTCGAACTT+AGG | 0.380277 | 4.3:-61453159 | MS.gene68267:CDS |
| GTGCACCCACCCTGGTTTCA+TGG | 0.382038 | 4.3:+61452623 | None:intergenic |
| GATAGGGCAAGCCCGTGTTC+TGG | 0.382269 | 4.3:+61453509 | None:intergenic |
| TAAAACACTATCTTCTTGTA+TGG | 0.383577 | 4.3:+61452432 | None:intergenic |
| GCAGAGTGGAAATCCATTCT+TGG | 0.384260 | 4.3:-61449475 | MS.gene68267:CDS |
| CCATTCTTGGATTCAAACTT+AGG | 0.385208 | 4.3:-61449462 | MS.gene68267:CDS |
| TTAAGACATTCTTGTGATCA+AGG | 0.387178 | 4.3:+61453316 | None:intergenic |
| GTTTCACAGGTTTGGTTCAT+GGG | 0.388563 | 4.3:-61454444 | MS.gene68267:intron |
| ATTAACAACCAGCAGCCTTC+AGG | 0.389547 | 4.3:+61449328 | None:intergenic |
| CCCAAATTGATGATAGCAAA+AGG | 0.403707 | 4.3:+61452073 | None:intergenic |
| CTTGTTAACTCAGGTTGTTT+CGG | 0.407813 | 4.3:-61453861 | MS.gene68267:intron |
| GCATGTCGAGCAAGACAGAT+AGG | 0.409849 | 4.3:+61453492 | None:intergenic |
| AGGCAGCCAAGTAAAGCTTA+TGG | 0.410878 | 4.3:-61450565 | MS.gene68267:CDS |
| TCACAAAGTCAAACAAGGTT+TGG | 0.411915 | 4.3:+61454876 | None:intergenic |
| CCGGATGATGCCTGTCCATT+GGG | 0.421408 | 4.3:-61450301 | MS.gene68267:CDS |
| TGTTCAGCCAAGTTTGCCTT+TGG | 0.422796 | 4.3:-61449590 | MS.gene68267:intron |
| TGGCTGAACATTGGAATTTG+TGG | 0.423136 | 4.3:+61449603 | None:intergenic |
| CTCTTGATGATTCGAACTTA+GGG | 0.423225 | 4.3:-61453158 | MS.gene68267:CDS |
| TTCTTCTTCAAATCCTCCCT+TGG | 0.423494 | 4.3:-61452551 | MS.gene68267:CDS |
| TCTTTATATGGCATGTTTGA+AGG | 0.424023 | 4.3:+61449757 | None:intergenic |
| AACTGATGAAATAATGCCTC+AGG | 0.426761 | 4.3:+61452670 | None:intergenic |
| AAGAGGAATCCTGAATGAAT+TGG | 0.426773 | 4.3:+61449654 | None:intergenic |
| CAAACTCTTGACCAAAATCC+AGG | 0.427241 | 4.3:+61453629 | None:intergenic |
| CAGCAATCGGTGGCTATAAT+CGG | 0.431344 | 4.3:-61453228 | MS.gene68267:CDS |
| CTTACTAGTTGCTCGGAGTA+AGG | 0.431485 | 4.3:-61451983 | MS.gene68267:intron |
| AGGCACGTTGAGTTCTCCTT+TGG | 0.438517 | 4.3:+61453754 | None:intergenic |
| AAACATGCCATATAAAGAAA+TGG | 0.438665 | 4.3:-61449752 | MS.gene68267:CDS |
| TTGCCATCTAGCTCAACAAA+TGG | 0.438712 | 4.3:-61454663 | MS.gene68267:CDS |
| TTGTTCTGATACGACAAATT+CGG | 0.439720 | 4.3:+61452798 | None:intergenic |
| CAAAGCATTGGACCGGTCTC+AGG | 0.441829 | 4.3:+61449417 | None:intergenic |
| CAACATAAACTGCCGCAAAC+AGG | 0.442152 | 4.3:+61456545 | None:intergenic |
| AGCAGTACCAAAGGCAAACT+TGG | 0.442672 | 4.3:+61449583 | None:intergenic |
| CTGTTGTATCAAGAGATAAC+TGG | 0.442960 | 4.3:+61450275 | None:intergenic |
| CCCTGGTTTCATGGTCTGCA+TGG | 0.444341 | 4.3:+61452632 | None:intergenic |
| TGGCTTTCCAAACCAGAAAC+GGG | 0.446194 | 4.3:+61450078 | None:intergenic |
| AGAAGGGTTATTAACCTTTG+TGG | 0.446634 | 4.3:+61452312 | None:intergenic |
| TCTATAAACTGCAGCAATCA+AGG | 0.447846 | 4.3:+61452845 | None:intergenic |
| TTTGATCCATAAGCTTTACT+TGG | 0.449616 | 4.3:+61450559 | None:intergenic |
| TTGGCTTTCCAAACCAGAAA+CGG | 0.450173 | 4.3:+61450077 | None:intergenic |
| AATCTGTTGCTGATACAGTT+AGG | 0.454028 | 4.3:-61450585 | MS.gene68267:CDS |
| TGATGACTACTCAGCCTAAT+CGG | 0.455645 | 4.3:+61452102 | None:intergenic |
| TACGCGTTATTCGTGGAGAA+TGG | 0.458427 | 4.3:-61453786 | MS.gene68267:CDS |
| GTTTGACTTTGTGAACAATC+AGG | 0.459893 | 4.3:-61454867 | MS.gene68267:intron |
| CAGAAGATTTCCACTTTCAT+GGG | 0.461514 | 4.3:-61449694 | MS.gene68267:CDS |
| AGAGAGGATGTTGTAGGCCT+TGG | 0.462324 | 4.3:+61450778 | None:intergenic |
| CATGTCTAATATTACAGTTA+TGG | 0.464441 | 4.3:-61452874 | MS.gene68267:CDS |
| TTATCATATGGACGCGATGC+TGG | 0.465130 | 4.3:+61449354 | None:intergenic |
| CCTAAGTTTGAATCCAAGAA+TGG | 0.465692 | 4.3:+61449462 | None:intergenic |
| GGAAAACTATGGGGATATCA+AGG | 0.467639 | 4.3:-61453831 | MS.gene68267:CDS |
| CCCAATGGACAGGCATCATC+CGG | 0.468273 | 4.3:+61450301 | None:intergenic |
| TGCCACAGCTTATCAGCAGC+AGG | 0.469495 | 4.3:-61449394 | MS.gene68267:CDS |
| AATGAGAGAGAGGATGTTGT+AGG | 0.471509 | 4.3:+61450772 | None:intergenic |
| CGTAACATTTGGCCTGTTTG+CGG | 0.471842 | 4.3:-61456557 | MS.gene68267:CDS |
| TACAACTGTACGTCGTGTCC+TGG | 0.473240 | 4.3:-61453573 | MS.gene68267:CDS |
| CTCAAAGAGTGCAGCTGAAG+AGG | 0.473402 | 4.3:+61452477 | None:intergenic |
| CTTGATCTTTCCCGCAATGC+AGG | 0.474405 | 4.3:+61456515 | None:intergenic |
| AGGGAAGATGCCACGAACCC+TGG | 0.476421 | 4.3:-61453647 | MS.gene68267:CDS |
| TCAAGGAAGATTCTCAAAAT+GGG | 0.477988 | 4.3:-61453814 | MS.gene68267:CDS |
| GCTCAACAAATGGGAGATGA+TGG | 0.478655 | 4.3:-61454653 | MS.gene68267:CDS |
| ACCGGATGATGCCTGTCCAT+TGG | 0.479159 | 4.3:-61450302 | MS.gene68267:CDS |
| TGTCACAGGTATTACCGATT+AGG | 0.479604 | 4.3:-61452116 | MS.gene68267:intron |
| GATAATTTCCTGAAGGCTGC+TGG | 0.482284 | 4.3:-61449336 | MS.gene68267:CDS |
| CAGTTATCTCTTGATACAAC+AGG | 0.483279 | 4.3:-61450274 | MS.gene68267:CDS |
| ATGAATTGGCAAGTAATGAT+TGG | 0.490570 | 4.3:+61449668 | None:intergenic |
| GGATTTGAAGAAGAAGGTTG+AGG | 0.490876 | 4.3:+61452559 | None:intergenic |
| AATAGCGGAACAAGGATTCC+AGG | 0.490919 | 4.3:+61453555 | None:intergenic |
| GGAATTCTACGCGTTATTCG+TGG | 0.491050 | 4.3:-61453793 | MS.gene68267:CDS |
| ATTATTTCATCAGTTACTCC+TGG | 0.493629 | 4.3:-61452662 | MS.gene68267:CDS |
| TCCATGCAGACCATGAAACC+AGG | 0.494159 | 4.3:-61452633 | MS.gene68267:CDS |
| TATCATTCTACCGGCGTGCG+AGG | 0.494328 | 4.3:+61456449 | None:intergenic |
| CAATCTATTATTGAAAATGC+TGG | 0.494952 | 4.3:-61453470 | MS.gene68267:intron |
| GCCTTCAGGAAATTATCATA+TGG | 0.495284 | 4.3:+61449342 | None:intergenic |
| ACGTACAGTTGTACCTTCCT+TGG | 0.497866 | 4.3:+61453583 | None:intergenic |
| TCAGGCAATGTGGTGGGTGA+CGG | 0.498916 | 4.3:+61449435 | None:intergenic |
| AAATCCTCTTCGTGTTCCTA+AGG | 0.499125 | 4.3:-61456256 | MS.gene68267:intron |
| GTTGTGCATCGGTACTAGCT+TGG | 0.499618 | 4.3:+61450058 | None:intergenic |
| ACGGCCATGGTATCGAGAAC+AGG | 0.501724 | 4.3:+61452909 | None:intergenic |
| CCCACCACATTGCCTGAGAC+CGG | 0.501838 | 4.3:-61449429 | MS.gene68267:CDS |
| TTGTATTTATAGGAAGTTGT+TGG | 0.503668 | 4.3:-61455716 | MS.gene68267:CDS |
| GGTCTGCATGGACCATTGCC+AGG | 0.503771 | 4.3:+61452644 | None:intergenic |
| TTGGTTCCATTGTATTACTT+CGG | 0.504659 | 4.3:+61453134 | None:intergenic |
| GATTCAGTGCTCGTCAAAGC+AGG | 0.507356 | 4.3:+61452334 | None:intergenic |
| TTCAAATCCTCCCTTGGCAA+AGG | 0.508274 | 4.3:-61452545 | MS.gene68267:CDS |
| AGGATACCAGTCTGGACTAA+AGG | 0.508989 | 4.3:-61450254 | MS.gene68267:CDS |
| AAGGGAGGATTTGAAGAAGA+AGG | 0.510924 | 4.3:+61452553 | None:intergenic |
| TAAAGGCTGTTGTTGTGCAT+CGG | 0.510975 | 4.3:+61450047 | None:intergenic |
| CGATGCTGGCAGTTGAAAGA+AGG | 0.515201 | 4.3:+61449368 | None:intergenic |
| TATCATCCTTTAGTCCAGAC+TGG | 0.515638 | 4.3:+61450248 | None:intergenic |
| AGCATTTCTCTCAATGAAAA+CGG | 0.516488 | 4.3:-61451397 | MS.gene68267:intron |
| TAGCAAACGATTCATTTGAC+TGG | 0.518116 | 4.3:+61450482 | None:intergenic |
| TCTTGGTTGTAATCAGGAAG+AGG | 0.518222 | 4.3:+61449637 | None:intergenic |
| GCCTTGTCTTACTAGTTGCT+CGG | 0.519811 | 4.3:-61451990 | MS.gene68267:CDS |
| ATCATTCTACCGGCGTGCGA+GGG | 0.521273 | 4.3:+61456450 | None:intergenic |
| TGACCAAAATCCAGGGTTCG+TGG | 0.523303 | 4.3:+61453637 | None:intergenic |
| GCCTCTTCACACTAGTTACT+CGG | 0.527178 | 4.3:+61452260 | None:intergenic |
| TCATTAACCAGTTGCAGGAA+AGG | 0.527548 | 4.3:+61450619 | None:intergenic |
| TCCTGATTACAACCAAGAAA+AGG | 0.529816 | 4.3:-61449632 | MS.gene68267:CDS |
| TGCCATCTAGCTCAACAAAT+GGG | 0.530176 | 4.3:-61454662 | MS.gene68267:CDS |
| GATACAACAGGATACCAGTC+TGG | 0.531614 | 4.3:-61450262 | MS.gene68267:CDS |
| AATATGCAACTTGATATTGT+CGG | 0.532526 | 4.3:-61453285 | MS.gene68267:CDS |
| ACTTCAAGTCCTATCGTCAA+TGG | 0.534321 | 4.3:-61454603 | MS.gene68267:intron |
| TGAATTGGCAAGTAATGATT+GGG | 0.541834 | 4.3:+61449669 | None:intergenic |
| AGGCAAACTTGGCTGAACAT+TGG | 0.542103 | 4.3:+61449594 | None:intergenic |
| TTGCGATAGAAATGAGAGAG+AGG | 0.542283 | 4.3:+61450762 | None:intergenic |
| ACCGGTCTCAGGCAATGTGG+TGG | 0.544210 | 4.3:+61449428 | None:intergenic |
| TGACGATAGGACTTGAAGTC+CGG | 0.545617 | 4.3:+61454607 | None:intergenic |
| TAAGCTGTGGCACAAAGCAT+TGG | 0.545776 | 4.3:+61449405 | None:intergenic |
| AAATGTCATCAACACTCAGC+AGG | 0.545797 | 4.3:+61450013 | None:intergenic |
| TCATCAGTTACTCCTGGCAA+TGG | 0.545940 | 4.3:-61452656 | MS.gene68267:CDS |
| CCTGCAGAATTCTTCTCATG+AGG | 0.550469 | 4.3:-61451458 | MS.gene68267:intron |
| CCAAATTGATGATAGCAAAA+GGG | 0.553351 | 4.3:+61452074 | None:intergenic |
| AATATCAGTTGCCTTTGCCA+AGG | 0.555412 | 4.3:+61452534 | None:intergenic |
| ATTGAGAGAAATGCTCCTCA+AGG | 0.556592 | 4.3:+61451405 | None:intergenic |
| TGATTGGGCACCCATGAAAG+TGG | 0.559105 | 4.3:+61449684 | None:intergenic |
| TCTTCTGTTGCTTTCCGGCG+AGG | 0.560458 | 4.3:+61449710 | None:intergenic |
| TAAAGCTTATGGATCAAAAG+AGG | 0.560884 | 4.3:-61450554 | MS.gene68267:CDS |
| ACTATGATAGTGCAGAGTCT+AGG | 0.562791 | 4.3:-61450460 | MS.gene68267:CDS |
| CTTGGATGTGAAAACAATCA+TGG | 0.566220 | 4.3:+61450796 | None:intergenic |
| CATTGTGAGAACCTCCTCGC+CGG | 0.567146 | 4.3:-61449724 | MS.gene68267:CDS |
| CGGCGAGGAGGTTCTCACAA+TGG | 0.570303 | 4.3:+61449725 | None:intergenic |
| AGCAAGCTACTTGCAAACAA+AGG | 0.572591 | 4.3:+61454959 | None:intergenic |
| CCGGTCTCAGGCAATGTGGT+GGG | 0.575594 | 4.3:+61449429 | None:intergenic |
| TACGAGGCATTCATCTACTT+CGG | 0.575702 | 4.3:+61453101 | None:intergenic |
| GGCCTGCTGCTGATAAGCTG+TGG | 0.575807 | 4.3:+61449392 | None:intergenic |
| AGACAACACACCACGTAGGA+AGG | 0.575883 | 4.3:-61449795 | MS.gene68267:CDS |
| TGACTTCAATCTATTAAGAA+CGG | 0.576842 | 4.3:+61452387 | None:intergenic |
| AACTGCAAGCATCACGCCGA+AGG | 0.577152 | 4.3:-61450841 | MS.gene68267:CDS |
| ATATCAGTTGCCTTTGCCAA+GGG | 0.577247 | 4.3:+61452535 | None:intergenic |
| AGAGATAACTGGACTCCCAA+TGG | 0.578004 | 4.3:+61450286 | None:intergenic |
| TCAATCTATTCATCATAGAA+GGG | 0.579432 | 4.3:+61452296 | None:intergenic |
| GTTATGCAGATCTCAGATGC+AGG | 0.580061 | 4.3:-61452933 | MS.gene68267:intron |
| GTGTTCTGGAGACCAGAGAT+TGG | 0.580951 | 4.3:+61453523 | None:intergenic |
| AAAGATGTTATAAGGAGTTG+AGG | 0.581387 | 4.3:-61455771 | MS.gene68267:CDS |
| TAACTGGACTCCCAATGGAC+AGG | 0.582987 | 4.3:+61450291 | None:intergenic |
| CCTTAATTGTTAACTGTACG+AGG | 0.582996 | 4.3:+61453085 | None:intergenic |
| CATGTCGAGCAAGACAGATA+GGG | 0.585911 | 4.3:+61453493 | None:intergenic |
| TGTGGCACAAAGCATTGGAC+CGG | 0.594211 | 4.3:+61449410 | None:intergenic |
| ATGGCTAAGTTAGCCAAGGA+AGG | 0.594419 | 4.3:-61453596 | MS.gene68267:CDS |
| AATCTCTGGTCTCCAGAACA+CGG | 0.597119 | 4.3:-61453521 | MS.gene68267:CDS |
| TCAGTTGCCTTTGCCAAGGG+AGG | 0.598902 | 4.3:+61452538 | None:intergenic |
| TGCTGGCAGTTGAAAGAAGG+CGG | 0.602146 | 4.3:+61449371 | None:intergenic |
| TGGATCAAAAGAGGATGATG+AGG | 0.602970 | 4.3:-61450545 | MS.gene68267:CDS |
| GACAAACTGACGATGGCACA+AGG | 0.608467 | 4.3:+61452581 | None:intergenic |
| GCCGAGTAACTAGTGTGAAG+AGG | 0.610135 | 4.3:-61452261 | MS.gene68267:CDS |
| TATGCGATGTGCACCCACCC+TGG | 0.610716 | 4.3:+61452615 | None:intergenic |
| AAATATGGCTAAGTTAGCCA+AGG | 0.613203 | 4.3:-61453600 | MS.gene68267:CDS |
| TCCATATGATAATTTCCTGA+AGG | 0.615364 | 4.3:-61449343 | MS.gene68267:CDS |
| ATCTCTGGTCTCCAGAACAC+GGG | 0.621594 | 4.3:-61453520 | MS.gene68267:CDS |
| TCTGTTGCTTTCCGGCGAGG+AGG | 0.621680 | 4.3:+61449713 | None:intergenic |
| CTAGTGTAAAGAGAGACCTT+CGG | 0.623227 | 4.3:+61450825 | None:intergenic |
| AATCGTCCGTGTTAAAAGAA+CGG | 0.624415 | 4.3:-61450342 | MS.gene68267:CDS |
| ATTGTTCACAAAGTCAAACA+AGG | 0.626698 | 4.3:+61454871 | None:intergenic |
| AAATTCTTCTTGATCAATCG+CGG | 0.626834 | 4.3:-61454925 | MS.gene68267:CDS |
| TCAACAATTACGGATACTTG+AGG | 0.628038 | 4.3:+61452238 | None:intergenic |
| ATTATCAAAATAGCGGAACA+AGG | 0.628643 | 4.3:+61453547 | None:intergenic |
| GATTGAAGTCAAGTTATAGT+CGG | 0.629009 | 4.3:-61452375 | MS.gene68267:CDS |
| ACTGATGAAATAATGCCTCA+GGG | 0.635325 | 4.3:+61452671 | None:intergenic |
| AAACTCTTGACCAAAATCCA+GGG | 0.643801 | 4.3:+61453630 | None:intergenic |
| GATTGGTATTATCAAAATAG+CGG | 0.647821 | 4.3:+61453540 | None:intergenic |
| AGGTCCTGTTCTCGATACCA+TGG | 0.653165 | 4.3:-61452913 | MS.gene68267:CDS |
| TAGGGTCCGAAGTAATACAA+TGG | 0.653776 | 4.3:-61453140 | MS.gene68267:CDS |
| ATCATATTACCATTGACGAT+AGG | 0.657452 | 4.3:+61454594 | None:intergenic |
| AACTAGTAAGACAAGGCTGT+AGG | 0.657522 | 4.3:+61451996 | None:intergenic |
| AACAAGAGTTCAGCAATCGG+TGG | 0.657645 | 4.3:-61453238 | MS.gene68267:CDS |
| GAATTTGTCGTATCAGAACA+AGG | 0.659033 | 4.3:-61452796 | MS.gene68267:intron |
| TGATATCTTCCCTCGCACGC+CGG | 0.663628 | 4.3:-61456459 | MS.gene68267:intron |
| TGGACCGGTCTCAGGCAATG+TGG | 0.668100 | 4.3:+61449425 | None:intergenic |
| GCAGACCATGAAACCAGGGT+GGG | 0.677610 | 4.3:-61452628 | MS.gene68267:CDS |
| CCATGCAGACCATGAAACCA+GGG | 0.679392 | 4.3:-61452632 | MS.gene68267:CDS |
| CATACCTTAGGAACACGAAG+AGG | 0.681157 | 4.3:+61456252 | None:intergenic |
| TGCAGACCATGAAACCAGGG+TGG | 0.685737 | 4.3:-61452629 | MS.gene68267:CDS |
| AGAATGGTAGTGAATGCCAA+AGG | 0.687586 | 4.3:-61453770 | MS.gene68267:CDS |
| TCCGAGCAACTAGTAAGACA+AGG | 0.696577 | 4.3:+61451989 | None:intergenic |
| GACGAGCACTGAATCCACAA+AGG | 0.700276 | 4.3:-61452326 | MS.gene68267:CDS |
| GGTTGAGGACAAACTGACGA+TGG | 0.710132 | 4.3:+61452574 | None:intergenic |
| GTGATATGATGAGACACTTG+CGG | 0.716325 | 4.3:-61453197 | MS.gene68267:CDS |
| TTGGAGACAACACACCACGT+AGG | 0.734551 | 4.3:-61449799 | MS.gene68267:CDS |
| TATTCTTTAGGCATTCCCTG+AGG | 0.740034 | 4.3:-61452686 | MS.gene68267:intron |
| AAACAGAAATCCTTCCTACG+TGG | 0.759461 | 4.3:+61449785 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 61449329 | 61456594 | 61449329 | ID=MS.gene68267 |
| chr4.3 | mRNA | 61449329 | 61456594 | 61449329 | ID=MS.gene68267.t1;Parent=MS.gene68267 |
| chr4.3 | exon | 61456460 | 61456594 | 61456460 | ID=MS.gene68267.t1.exon1;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61456460 | 61456594 | 61456460 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61456257 | 61456331 | 61456257 | ID=MS.gene68267.t1.exon2;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61456257 | 61456331 | 61456257 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61455697 | 61455812 | 61455697 | ID=MS.gene68267.t1.exon3;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61455697 | 61455812 | 61455697 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61454868 | 61454982 | 61454868 | ID=MS.gene68267.t1.exon4;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61454868 | 61454982 | 61454868 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61454604 | 61454732 | 61454604 | ID=MS.gene68267.t1.exon5;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61454604 | 61454732 | 61454604 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61454410 | 61454457 | 61454410 | ID=MS.gene68267.t1.exon6;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61454410 | 61454457 | 61454410 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61453752 | 61453870 | 61453752 | ID=MS.gene68267.t1.exon7;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61453752 | 61453870 | 61453752 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61453471 | 61453667 | 61453471 | ID=MS.gene68267.t1.exon8;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61453471 | 61453667 | 61453471 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61453086 | 61453378 | 61453086 | ID=MS.gene68267.t1.exon9;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61453086 | 61453378 | 61453086 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61452797 | 61452946 | 61452797 | ID=MS.gene68267.t1.exon10;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61452797 | 61452946 | 61452797 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61452213 | 61452698 | 61452213 | ID=MS.gene68267.t1.exon11;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61452213 | 61452698 | 61452213 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61451984 | 61452130 | 61451984 | ID=MS.gene68267.t1.exon12;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61451984 | 61452130 | 61451984 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61451398 | 61451473 | 61451398 | ID=MS.gene68267.t1.exon13;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61451398 | 61451473 | 61451398 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61450739 | 61450866 | 61450739 | ID=MS.gene68267.t1.exon14;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61450739 | 61450866 | 61450739 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61450447 | 61450647 | 61450447 | ID=MS.gene68267.t1.exon15;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61450447 | 61450647 | 61450447 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61450234 | 61450365 | 61450234 | ID=MS.gene68267.t1.exon16;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61450234 | 61450365 | 61450234 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61450005 | 61450136 | 61450005 | ID=MS.gene68267.t1.exon17;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61450005 | 61450136 | 61450005 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61449591 | 61449824 | 61449591 | ID=MS.gene68267.t1.exon18;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61449591 | 61449824 | 61449591 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| chr4.3 | exon | 61449329 | 61449499 | 61449329 | ID=MS.gene68267.t1.exon19;Parent=MS.gene68267.t1 |
| chr4.3 | CDS | 61449329 | 61449499 | 61449329 | ID=cds.MS.gene68267.t1;Parent=MS.gene68267.t1 |
| Gene Sequence |
| Protein sequence |
