Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004921.t1 | XP_013468801.1 | 95.9 | 394 | 11 | 2 | 1 | 393 | 1 | 390 | 1.80E-214 | 755 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004921.t1 | Q9FFZ1 | 23.4 | 342 | 200 | 11 | 94 | 395 | 97 | 416 | 4.1e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004921.t1 | A0A072VN42 | 95.9 | 394 | 11 | 2 | 1 | 393 | 1 | 390 | 1.3e-214 | 755.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87466 | MS.gene004921 | PPI |
| MS.gene004921 | MS.gene053824 | PPI |
| MS.gene004921 | MS.gene012023 | PPI |
| MS.gene63050 | MS.gene004921 | PPI |
| MS.gene004921 | MS.gene76418 | PPI |
| MS.gene65675 | MS.gene004921 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004921.t1 | MTR_1g076920 | 95.939 | 394 | 11 | 2 | 1 | 393 | 1 | 390 | 0.0 | 767 |
| MS.gene004921.t1 | MTR_5g056200 | 34.483 | 319 | 178 | 9 | 84 | 396 | 50 | 343 | 5.17e-53 | 180 |
| MS.gene004921.t1 | MTR_8g077185 | 35.593 | 354 | 186 | 12 | 58 | 394 | 38 | 366 | 7.58e-52 | 177 |
| MS.gene004921.t1 | MTR_4g036495 | 31.190 | 311 | 172 | 12 | 87 | 390 | 398 | 673 | 3.27e-25 | 108 |
| MS.gene004921.t1 | MTR_3g034670 | 25.070 | 355 | 198 | 13 | 82 | 393 | 121 | 450 | 2.30e-22 | 99.4 |
| MS.gene004921.t1 | MTR_2g102800 | 24.068 | 295 | 182 | 9 | 121 | 395 | 376 | 648 | 2.61e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004921.t1 | AT5G38520 | 67.953 | 337 | 98 | 3 | 62 | 396 | 34 | 362 | 9.51e-161 | 456 |
| MS.gene004921.t1 | AT5G38520 | 66.764 | 343 | 104 | 3 | 62 | 396 | 34 | 374 | 3.12e-160 | 455 |
| MS.gene004921.t1 | AT5G19850 | 33.631 | 336 | 184 | 10 | 59 | 383 | 42 | 349 | 2.55e-54 | 184 |
| MS.gene004921.t1 | AT4G36530 | 33.236 | 343 | 177 | 14 | 64 | 391 | 1 | 306 | 6.98e-47 | 163 |
| MS.gene004921.t1 | AT4G36530 | 33.140 | 344 | 178 | 14 | 63 | 391 | 57 | 363 | 1.64e-46 | 164 |
| MS.gene004921.t1 | AT5G13800 | 27.168 | 346 | 182 | 15 | 94 | 395 | 97 | 416 | 5.16e-22 | 98.2 |
| MS.gene004921.t1 | AT5G13800 | 27.168 | 346 | 182 | 15 | 94 | 395 | 97 | 416 | 5.16e-22 | 98.2 |
| MS.gene004921.t1 | AT5G13800 | 27.168 | 346 | 182 | 15 | 94 | 395 | 120 | 439 | 8.81e-22 | 97.4 |
| MS.gene004921.t1 | AT4G25290 | 28.313 | 332 | 178 | 12 | 79 | 395 | 386 | 672 | 2.27e-21 | 96.7 |
| MS.gene004921.t1 | AT5G13800 | 26.933 | 375 | 194 | 16 | 51 | 381 | 64 | 402 | 1.10e-20 | 93.6 |
| MS.gene004921.t1 | AT4G12830 | 36.441 | 118 | 65 | 3 | 110 | 224 | 125 | 235 | 4.10e-14 | 73.9 |
| MS.gene004921.t1 | AT1G80280 | 24.399 | 291 | 180 | 10 | 121 | 393 | 374 | 642 | 1.18e-13 | 73.2 |
Find 90 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATGCTATTGATCTTCT+TGG | 0.157772 | 1.4:-63131360 | MS.gene004921:CDS |
| GCTATTGATCTTCTTGGTTT+TGG | 0.163333 | 1.4:-63131354 | MS.gene004921:CDS |
| TGAAGAAACAAAATAATTTA+TGG | 0.207219 | 1.4:+63131859 | None:intergenic |
| ACAGTTGATCTTGGATTTCT+TGG | 0.227874 | 1.4:-63131023 | MS.gene004921:intron |
| TGTCTCATTGCTGCTGCTTC+AGG | 0.241897 | 1.4:-63130944 | MS.gene004921:CDS |
| TCTCCCCATAAAAGTAAAAT+AGG | 0.274171 | 1.4:+63130219 | None:intergenic |
| TGTTTCTACCACCATTGTTT+TGG | 0.280780 | 1.4:+63132005 | None:intergenic |
| CTGTTACTTGTCCATGGCTT+TGG | 0.291905 | 1.4:-63131797 | MS.gene004921:CDS |
| AATTGATACAAATGCATCTA+AGG | 0.330008 | 1.4:+63130296 | None:intergenic |
| GGCACCAATTGCACTGGATT+AGG | 0.332925 | 1.4:+63130255 | None:intergenic |
| TTGCAGAAGCAATTCCCTTT+TGG | 0.333173 | 1.4:+63130690 | None:intergenic |
| GAGTTCAGTGTATGGAAATA+AGG | 0.338288 | 1.4:-63130550 | MS.gene004921:CDS |
| TCAATACAAACAGTTGATCT+TGG | 0.347401 | 1.4:-63131032 | MS.gene004921:intron |
| ACAAAGCAATTGTTGATGAT+TGG | 0.354224 | 1.4:-63130763 | MS.gene004921:CDS |
| AAGTAACAGAGGAGGGTTAT+TGG | 0.354968 | 1.4:+63131811 | None:intergenic |
| GATCCCTTTACTCCAATTGA+TGG | 0.363586 | 1.4:-63130192 | MS.gene004921:CDS |
| TCAAGTGAAACTCTAGTTAG+AGG | 0.364835 | 1.4:-63130821 | MS.gene004921:CDS |
| TAATGATCCTGAAGTTTCTA+TGG | 0.365035 | 1.4:+63131940 | None:intergenic |
| CAGAAGCCAACAGTACTAAT+AGG | 0.371016 | 1.4:-63130989 | MS.gene004921:CDS |
| AGTTGCTTCTACCCTTGCTT+TGG | 0.373716 | 1.4:-63130733 | MS.gene004921:CDS |
| GCATTTGTATCAATTGTAAC+AGG | 0.377701 | 1.4:-63130288 | MS.gene004921:CDS |
| ACTAGAGTTTCACTTGAATC+TGG | 0.383055 | 1.4:+63130827 | None:intergenic |
| TTTGATTCTGCAGATCATTA+GGG | 0.383631 | 1.4:-63130340 | MS.gene004921:intron |
| TTTCCAACTGGTCCATCAAT+TGG | 0.392220 | 1.4:+63130180 | None:intergenic |
| AAGGCTCCTTCAGCATTTGC+CGG | 0.395058 | 1.4:+63130315 | None:intergenic |
| GGCCACTCTTTCAAATTCAT+AGG | 0.397879 | 1.4:-63130037 | None:intergenic |
| ATTGTGCTATTAAATTGTTC+TGG | 0.404463 | 1.4:-63130797 | MS.gene004921:CDS |
| GCTGCTTCCATAGAAACTTC+AGG | 0.412435 | 1.4:-63131947 | MS.gene004921:CDS |
| GGTCCATCAATTGGAGTAAA+GGG | 0.413778 | 1.4:+63130189 | None:intergenic |
| GTTCAACTGTTCATGCTTGA+AGG | 0.416044 | 1.4:-63130123 | MS.gene004921:CDS |
| ACAAGTGCTGTTCATTCAGT+TGG | 0.421358 | 1.4:-63132148 | MS.gene004921:CDS |
| CAAGTGCTGTTCATTCAGTT+GGG | 0.427250 | 1.4:-63132147 | MS.gene004921:CDS |
| GCTTATGCAGAGAGAATTTG+AGG | 0.428427 | 1.4:-63130581 | MS.gene004921:intron |
| TTGGTGCTTCCATTCCTCAC+TGG | 0.451292 | 1.4:-63131778 | MS.gene004921:CDS |
| AGGACCTAATCCAGTGCAAT+TGG | 0.451647 | 1.4:-63130259 | MS.gene004921:CDS |
| GAAGAAAAGTACTTTCCAAC+TGG | 0.454066 | 1.4:+63130168 | None:intergenic |
| TAAAGCAGAAATGTCTTAAG+TGG | 0.464903 | 1.4:-63131901 | MS.gene004921:CDS |
| CCTCCTCTGTTACTTGTCCA+TGG | 0.474310 | 1.4:-63131803 | MS.gene004921:CDS |
| AAGCAATTGTTGATGATTGG+AGG | 0.477562 | 1.4:-63130760 | MS.gene004921:CDS |
| TCTGCAGATCATTAGGGAAC+CGG | 0.477903 | 1.4:-63130334 | MS.gene004921:intron |
| TGGTCCATCAATTGGAGTAA+AGG | 0.483632 | 1.4:+63130188 | None:intergenic |
| GACATTGTCCCCATGATGAC+AGG | 0.489475 | 1.4:-63130095 | MS.gene004921:CDS |
| TTCAACTGTTCATGCTTGAA+GGG | 0.491418 | 1.4:-63130122 | MS.gene004921:CDS |
| GAGTTTCCTATTAGTACTGT+TGG | 0.496781 | 1.4:+63130983 | None:intergenic |
| AAGAGTGTTCTTTGATGTAG+TGG | 0.499396 | 1.4:+63132063 | None:intergenic |
| GTACTAATAGGAAACTCTGT+TGG | 0.499809 | 1.4:-63130977 | MS.gene004921:CDS |
| CTAATTCAGGCCTGTCATCA+TGG | 0.500280 | 1.4:+63130085 | None:intergenic |
| CTGTTCATGCTTGAAGGGGT+TGG | 0.503540 | 1.4:-63130117 | MS.gene004921:CDS |
| TTCCTATGAATTTGAAAGAG+TGG | 0.507708 | 1.4:+63130035 | None:intergenic |
| AACATCTTGAGTTCAGTGTA+TGG | 0.513396 | 1.4:-63130558 | MS.gene004921:CDS |
| TAATTCAGGCCTGTCATCAT+GGG | 0.516079 | 1.4:+63130086 | None:intergenic |
| TTTCATATACCATGGAAACA+TGG | 0.520371 | 1.4:-63131308 | MS.gene004921:CDS |
| CTTTGATGTAGTGGTTCTTG+TGG | 0.520475 | 1.4:+63132072 | None:intergenic |
| GAAAGATTCAACAGCAACAA+TGG | 0.520584 | 1.4:-63132109 | MS.gene004921:CDS |
| AGAAATGTCTTAAGTGGAAG+TGG | 0.522801 | 1.4:-63131895 | MS.gene004921:CDS |
| ACTCCAATTGATGGACCAGT+TGG | 0.523530 | 1.4:-63130183 | MS.gene004921:CDS |
| ATTTGAAAGAGTGGCCAACC+AGG | 0.525397 | 1.4:+63130044 | None:intergenic |
| CTTCCATTCCTCACTGGCGC+AGG | 0.530591 | 1.4:-63131772 | MS.gene004921:intron |
| AATTGCACTGGATTAGGTCC+TGG | 0.538070 | 1.4:+63130261 | None:intergenic |
| AAAATCAATCAGCCAAAGCA+AGG | 0.544075 | 1.4:+63130721 | None:intergenic |
| GGAGCATCAGATAAGCCACC+AGG | 0.544264 | 1.4:-63131333 | MS.gene004921:CDS |
| TACCTCGGCCCATGTTTCCA+TGG | 0.546489 | 1.4:+63131299 | None:intergenic |
| ATGTAGTGGTTCTTGTGGAT+AGG | 0.570737 | 1.4:+63132077 | None:intergenic |
| GAATGGAAGCACCAAAGCCA+TGG | 0.571641 | 1.4:+63131786 | None:intergenic |
| ATACCTGCGCCAGTGAGGAA+TGG | 0.572463 | 1.4:+63131769 | None:intergenic |
| TACCATGGAAACATGGGCCG+AGG | 0.573122 | 1.4:-63131301 | MS.gene004921:intron |
| TTCATATACCATGGAAACAT+GGG | 0.575368 | 1.4:-63131307 | MS.gene004921:CDS |
| GTATGGAAATAAGGAGGCTG+TGG | 0.584738 | 1.4:-63130541 | MS.gene004921:CDS |
| TCAATTGTAACAGGACCACC+AGG | 0.596405 | 1.4:-63130279 | MS.gene004921:CDS |
| TGTCTTAAGTGGAAGTGGAA+AGG | 0.597275 | 1.4:-63131890 | MS.gene004921:CDS |
| AGGGAACCGGCAAATGCTGA+AGG | 0.603376 | 1.4:-63130321 | MS.gene004921:CDS |
| AAATCAATCAGCCAAAGCAA+GGG | 0.606197 | 1.4:+63130722 | None:intergenic |
| GTGCTATTAAATTGTTCTGG+TGG | 0.607382 | 1.4:-63130794 | MS.gene004921:CDS |
| TGCACTGGATTAGGTCCTGG+TGG | 0.608382 | 1.4:+63130264 | None:intergenic |
| GGCTGTGGATGATGAACTCG+TGG | 0.631002 | 1.4:-63130526 | MS.gene004921:CDS |
| TTTGAAAGAGTGGCCAACCA+GGG | 0.631950 | 1.4:+63130045 | None:intergenic |
| CATGGACAAGTAACAGAGGA+GGG | 0.632484 | 1.4:+63131804 | None:intergenic |
| CAGCAGCAATGAGACAAGCA+AGG | 0.632663 | 1.4:+63130951 | None:intergenic |
| GGTTCTTGTGGATAGGAACA+AGG | 0.635082 | 1.4:+63132084 | None:intergenic |
| CACTTGAGTATCCAAAACAA+TGG | 0.643281 | 1.4:-63132016 | MS.gene004921:CDS |
| TTCAGTGTATGGAAATAAGG+AGG | 0.648155 | 1.4:-63130547 | MS.gene004921:CDS |
| CCATGGACAAGTAACAGAGG+AGG | 0.649384 | 1.4:+63131803 | None:intergenic |
| TCAACTGTTCATGCTTGAAG+GGG | 0.658262 | 1.4:-63130121 | MS.gene004921:CDS |
| TTGAGTATCCAAAACAATGG+TGG | 0.671173 | 1.4:-63132013 | MS.gene004921:CDS |
| CAAACATACCTGCGCCAGTG+AGG | 0.679154 | 1.4:+63131764 | None:intergenic |
| AATTCAGGCCTGTCATCATG+GGG | 0.687756 | 1.4:+63130087 | None:intergenic |
| TCCATGGTATATGAAAAGCC+TGG | 0.710891 | 1.4:+63131315 | None:intergenic |
| ATGGTATATGAAAAGCCTGG+TGG | 0.727869 | 1.4:+63131318 | None:intergenic |
| AAGCCATGGACAAGTAACAG+AGG | 0.730393 | 1.4:+63131800 | None:intergenic |
| TGTGGATGATGAACTCGTGG+AGG | 0.755163 | 1.4:-63130523 | MS.gene004921:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAACAAAATAATTTA+TGG | + | chr1.4:63130339-63130358 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTAACTTATA+CGG | - | chr1.4:63131132-63131151 | MS.gene004921:intron | 15.0% |
| !!! | TATTTTTCTTAAGCAAAATT+GGG | - | chr1.4:63130753-63130772 | MS.gene004921:CDS | 15.0% |
| !! | AAAAAAATAAATACTCCTTC+CGG | + | chr1.4:63131808-63131827 | None:intergenic | 20.0% |
| !! | AAATGGAAGTTAATTATACT+AGG | - | chr1.4:63130618-63130637 | MS.gene004921:intron | 20.0% |
| !! | AGAATATAAAGTGATAAACA+AGG | + | chr1.4:63130528-63130547 | None:intergenic | 20.0% |
| !! | AGTATAATTAACTTCCATTT+AGG | + | chr1.4:63130618-63130637 | None:intergenic | 20.0% |
| !! | TTAAGAAAAATAGTTGAACA+CGG | + | chr1.4:63130745-63130764 | None:intergenic | 20.0% |
| !!! | AAAAAAATGTGACATTTTAG+AGG | + | chr1.4:63130702-63130721 | None:intergenic | 20.0% |
| !!! | AAAATAGGCATTGATATTTT+TGG | + | chr1.4:63131964-63131983 | None:intergenic | 20.0% |
| !!! | AATGCCTATTTTACTTTTAT+GGG | - | chr1.4:63131972-63131991 | MS.gene004921:CDS | 20.0% |
| !!! | CTATTTTTCTTAAGCAAAAT+TGG | - | chr1.4:63130752-63130771 | MS.gene004921:CDS | 20.0% |
| !!! | GATTTTTTATTGAACCAAAA+GGG | - | chr1.4:63131491-63131510 | MS.gene004921:intron | 20.0% |
| !!! | TCTCTAAAATAGTTATATTG+CGG | + | chr1.4:63130995-63131014 | None:intergenic | 20.0% |
| !!! | TGATTTTTTATTGAACCAAA+AGG | - | chr1.4:63131490-63131509 | MS.gene004921:intron | 20.0% |
| ! | AAAATATGAGTTATTGACAG+TGG | + | chr1.4:63130457-63130476 | None:intergenic | 25.0% |
| ! | AAAGGTAATCTCTTTAGATT+AGG | - | chr1.4:63131546-63131565 | MS.gene004921:intron | 25.0% |
| ! | AATTGATACAAATGCATCTA+AGG | + | chr1.4:63131902-63131921 | None:intergenic | 25.0% |
| ! | CCAAAAATTTAGGGAAATTA+TGG | + | chr1.4:63131572-63131591 | None:intergenic | 25.0% |
| ! | GTTTCCTATCCAAAAATTTA+GGG | + | chr1.4:63131581-63131600 | None:intergenic | 25.0% |
| ! | TTTAATGATGTCGAACTAAA+AGG | + | chr1.4:63130934-63130953 | None:intergenic | 25.0% |
| !! | ATTGTGCTATTAAATTGTTC+TGG | - | chr1.4:63131398-63131417 | MS.gene004921:intron | 25.0% |
| !! | ATTTTTGTCTACAAAACCAA+CGG | + | chr1.4:63131747-63131766 | None:intergenic | 25.0% |
| !! | CATCAAGATTTTTCTTTTTC+AGG | - | chr1.4:63130782-63130801 | MS.gene004921:CDS | 25.0% |
| !! | CCATAATTTCCCTAAATTTT+TGG | - | chr1.4:63131569-63131588 | MS.gene004921:intron | 25.0% |
| !! | TCTTTTAGCAAAAAAATGAG+TGG | + | chr1.4:63130496-63130515 | None:intergenic | 25.0% |
| !!! | AATTTTTCATGGACTAATTC+AGG | + | chr1.4:63132126-63132145 | None:intergenic | 25.0% |
| !!! | ATGCCTATTTTACTTTTATG+GGG | - | chr1.4:63131973-63131992 | MS.gene004921:CDS | 25.0% |
| !!! | ATTTCCCTAAATTTTTGGAT+AGG | - | chr1.4:63131574-63131593 | MS.gene004921:intron | 25.0% |
| !!! | CAATGCCTATTTTACTTTTA+TGG | - | chr1.4:63131971-63131990 | MS.gene004921:CDS | 25.0% |
| CTTGATATTTAGGCAAAATG+TGG | + | chr1.4:63131050-63131069 | None:intergenic | 30.0% | |
| GCATTTGTATCAATTGTAAC+AGG | - | chr1.4:63131907-63131926 | MS.gene004921:CDS | 30.0% | |
| GGTTTCCTATCCAAAAATTT+AGG | + | chr1.4:63131582-63131601 | None:intergenic | 30.0% | |
| GTTTATGCTATTGATCTTCT+TGG | - | chr1.4:63130835-63130854 | MS.gene004921:CDS | 30.0% | |
| TAAAGCAGAAATGTCTTAAG+TGG | - | chr1.4:63130294-63130313 | MS.gene004921:CDS | 30.0% | |
| TAATGATCCTGAAGTTTCTA+TGG | + | chr1.4:63130258-63130277 | None:intergenic | 30.0% | |
| TACAAAACCAACGGTTAAAA+AGG | + | chr1.4:63131738-63131757 | None:intergenic | 30.0% | |
| TCAATACAAACAGTTGATCT+TGG | - | chr1.4:63131163-63131182 | MS.gene004921:intron | 30.0% | |
| TCTCCCCATAAAAGTAAAAT+AGG | + | chr1.4:63131979-63131998 | None:intergenic | 30.0% | |
| TCTTAAGCAAAATTGGGTTA+AGG | - | chr1.4:63130759-63130778 | MS.gene004921:CDS | 30.0% | |
| TGATGCAAACCTTGATATTT+AGG | + | chr1.4:63131060-63131079 | None:intergenic | 30.0% | |
| TTCATATACCATGGAAACAT+GGG | - | chr1.4:63130888-63130907 | MS.gene004921:intron | 30.0% | |
| TTTCATATACCATGGAAACA+TGG | - | chr1.4:63130887-63130906 | MS.gene004921:intron | 30.0% | |
| TTTGATTCTGCAGATCATTA+GGG | - | chr1.4:63131855-63131874 | MS.gene004921:CDS | 30.0% | |
| ! | CACATTTTGCCTAAATATCA+AGG | - | chr1.4:63131048-63131067 | MS.gene004921:intron | 30.0% |
| ! | TGAACATTTTCTTGTTGAGA+AGG | + | chr1.4:63132057-63132076 | None:intergenic | 30.0% |
| ! | TGCATAAGCAATACAGTTTT+AGG | + | chr1.4:63131603-63131622 | None:intergenic | 30.0% |
| !! | ACAAAGCAATTGTTGATGAT+TGG | - | chr1.4:63131432-63131451 | MS.gene004921:intron | 30.0% |
| !! | ATGTGACATTTTAGAGGTAT+TGG | + | chr1.4:63130696-63130715 | None:intergenic | 30.0% |
| !! | TTTTGATTCTGCAGATCATT+AGG | - | chr1.4:63131854-63131873 | MS.gene004921:CDS | 30.0% |
| !! | TTTTTGAGCGTGTTAAACAA+AGG | - | chr1.4:63131528-63131547 | MS.gene004921:intron | 30.0% |
| !!! | TTGTCGTTTTCAAAGTTCAA+TGG | - | chr1.4:63131777-63131796 | MS.gene004921:CDS | 30.0% |
| AAAATCAATCAGCCAAAGCA+AGG | + | chr1.4:63131477-63131496 | None:intergenic | 35.0% | |
| AAATCAATCAGCCAAAGCAA+GGG | + | chr1.4:63131476-63131495 | None:intergenic | 35.0% | |
| AAATGAGTGGATGAGAATTG+TGG | + | chr1.4:63130483-63130502 | None:intergenic | 35.0% | |
| AACATCTTGAGTTCAGTGTA+TGG | - | chr1.4:63131637-63131656 | MS.gene004921:intron | 35.0% | |
| AATGTGATTATGCACCACTT+AGG | + | chr1.4:63130657-63130676 | None:intergenic | 35.0% | |
| ACAGTTGATCTTGGATTTCT+TGG | - | chr1.4:63131172-63131191 | MS.gene004921:intron | 35.0% | |
| ACTAGAGTTTCACTTGAATC+TGG | + | chr1.4:63131371-63131390 | None:intergenic | 35.0% | |
| AGAAATGTCTTAAGTGGAAG+TGG | - | chr1.4:63130300-63130319 | MS.gene004921:CDS | 35.0% | |
| CACTTGAGTATCCAAAACAA+TGG | - | chr1.4:63130179-63130198 | MS.gene004921:CDS | 35.0% | |
| CTGCATTGTAACTGTAATTG+CGG | - | chr1.4:63131024-63131043 | MS.gene004921:intron | 35.0% | |
| GAAAGATTCAACAGCAACAA+TGG | - | chr1.4:63130086-63130105 | MS.gene004921:CDS | 35.0% | |
| GAAATGAATTAGTGCCTAAG+TGG | - | chr1.4:63130640-63130659 | MS.gene004921:intron | 35.0% | |
| GAGTTCAGTGTATGGAAATA+AGG | - | chr1.4:63131645-63131664 | MS.gene004921:intron | 35.0% | |
| GAGTTTCCTATTAGTACTGT+TGG | + | chr1.4:63131215-63131234 | None:intergenic | 35.0% | |
| GTACTAATAGGAAACTCTGT+TGG | - | chr1.4:63131218-63131237 | MS.gene004921:intron | 35.0% | |
| TCAAAGTTCAATGGAATCAC+CGG | - | chr1.4:63131786-63131805 | MS.gene004921:CDS | 35.0% | |
| TCAAGTGAAACTCTAGTTAG+AGG | - | chr1.4:63131374-63131393 | MS.gene004921:CDS | 35.0% | |
| TTCAACTGTTCATGCTTGAA+GGG | - | chr1.4:63132073-63132092 | MS.gene004921:CDS | 35.0% | |
| TTCAGTGTATGGAAATAAGG+AGG | - | chr1.4:63131648-63131667 | MS.gene004921:intron | 35.0% | |
| TTGAGTATCCAAAACAATGG+TGG | - | chr1.4:63130182-63130201 | MS.gene004921:CDS | 35.0% | |
| TTGTAGTTTGGACTGCAATT+TGG | + | chr1.4:63130966-63130985 | None:intergenic | 35.0% | |
| ! | GCTATTGATCTTCTTGGTTT+TGG | - | chr1.4:63130841-63130860 | MS.gene004921:intron | 35.0% |
| ! | GGTGCATAATCACATTTTAG+TGG | - | chr1.4:63130661-63130680 | MS.gene004921:intron | 35.0% |
| ! | GTGCTATTAAATTGTTCTGG+TGG | - | chr1.4:63131401-63131420 | MS.gene004921:intron | 35.0% |
| ! | TTTTGGATACTCAAGTGGTT+TGG | + | chr1.4:63130176-63130195 | None:intergenic | 35.0% |
| !! | AAGAGTGTTCTTTGATGTAG+TGG | + | chr1.4:63130135-63130154 | None:intergenic | 35.0% |
| !! | AAGCAATTGTTGATGATTGG+AGG | - | chr1.4:63131435-63131454 | MS.gene004921:intron | 35.0% |
| !! | GAAGAAAAGTACTTTCCAAC+TGG | + | chr1.4:63132030-63132049 | None:intergenic | 35.0% |
| !! | TGTGCTTTTTAGTGCCTAAA+TGG | - | chr1.4:63130601-63130620 | MS.gene004921:intron | 35.0% |
| !! | TGTTTCTACCACCATTGTTT+TGG | + | chr1.4:63130193-63130212 | None:intergenic | 35.0% |
| !!! | CATTGTTTTGGATACTCAAG+TGG | + | chr1.4:63130181-63130200 | None:intergenic | 35.0% |
| AAGTAACAGAGGAGGGTTAT+TGG | + | chr1.4:63130387-63130406 | None:intergenic | 40.0% | |
| ACAGTTCTTAATCGCAGTTG+CGG | + | chr1.4:63131098-63131117 | None:intergenic | 40.0% | |
| ATGGTATATGAAAAGCCTGG+TGG | + | chr1.4:63130880-63130899 | None:intergenic | 40.0% | |
| ATGTAGTGGTTCTTGTGGAT+AGG | + | chr1.4:63130121-63130140 | None:intergenic | 40.0% | |
| CAGAAGCCAACAGTACTAAT+AGG | - | chr1.4:63131206-63131225 | MS.gene004921:intron | 40.0% | |
| CTTTGATGTAGTGGTTCTTG+TGG | + | chr1.4:63130126-63130145 | None:intergenic | 40.0% | |
| GAACTCGTGGAGGTAAATTA+AGG | - | chr1.4:63131682-63131701 | MS.gene004921:intron | 40.0% | |
| GATCCCTTTACTCCAATTGA+TGG | - | chr1.4:63132003-63132022 | MS.gene004921:CDS | 40.0% | |
| GCTTATGCAGAGAGAATTTG+AGG | - | chr1.4:63131614-63131633 | MS.gene004921:intron | 40.0% | |
| GGTCCATCAATTGGAGTAAA+GGG | + | chr1.4:63132009-63132028 | None:intergenic | 40.0% | |
| GTTCAACTGTTCATGCTTGA+AGG | - | chr1.4:63132072-63132091 | MS.gene004921:CDS | 40.0% | |
| TAATTCAGGCCTGTCATCAT+GGG | + | chr1.4:63132112-63132131 | None:intergenic | 40.0% | |
| TCAACTGTTCATGCTTGAAG+GGG | - | chr1.4:63132074-63132093 | MS.gene004921:CDS | 40.0% | |
| TCCATGAAAAATTGCTTCCC+TGG | - | chr1.4:63132133-63132152 | MS.gene004921:CDS | 40.0% | |
| TCCATGGTATATGAAAAGCC+TGG | + | chr1.4:63130883-63130902 | None:intergenic | 40.0% | |
| TGAAAAATTGCTTCCCTGGT+TGG | - | chr1.4:63132137-63132156 | MS.gene004921:CDS | 40.0% | |
| TGGTCCATCAATTGGAGTAA+AGG | + | chr1.4:63132010-63132029 | None:intergenic | 40.0% | |
| TGTCGAACTAAAAGGTCGAT+AGG | + | chr1.4:63130926-63130945 | None:intergenic | 40.0% | |
| TGTCTTAAGTGGAAGTGGAA+AGG | - | chr1.4:63130305-63130324 | MS.gene004921:CDS | 40.0% | |
| TTTCCAACTGGTCCATCAAT+TGG | + | chr1.4:63132018-63132037 | None:intergenic | 40.0% | |
| ! | ACAAGTGCTGTTCATTCAGT+TGG | - | chr1.4:63130047-63130066 | MS.gene004921:CDS | 40.0% |
| ! | ACCAGGCTTTTCATATACCA+TGG | - | chr1.4:63130879-63130898 | MS.gene004921:intron | 40.0% |
| ! | ACCAGGGAAGCAATTTTTCA+TGG | + | chr1.4:63132137-63132156 | None:intergenic | 40.0% |
| ! | CAAGTGCTGTTCATTCAGTT+GGG | - | chr1.4:63130048-63130067 | MS.gene004921:CDS | 40.0% |
| ! | CTTCGTTCCTTTTTAACCGT+TGG | - | chr1.4:63131728-63131747 | MS.gene004921:intron | 40.0% |
| ! | TTGCAGAAGCAATTCCCTTT+TGG | + | chr1.4:63131508-63131527 | None:intergenic | 40.0% |
| !!! | ATTTTTGGCACCAATTGCAC+TGG | + | chr1.4:63131949-63131968 | None:intergenic | 40.0% |
| AAGCCATGGACAAGTAACAG+AGG | + | chr1.4:63130398-63130417 | None:intergenic | 45.0% | |
| AATTCAGGCCTGTCATCATG+GGG | + | chr1.4:63132111-63132130 | None:intergenic | 45.0% | |
| AGGACCTAATCCAGTGCAAT+TGG | - | chr1.4:63131936-63131955 | MS.gene004921:CDS | 45.0% | |
| AGGTCGATAGGCAAATACCT+CGG | + | chr1.4:63130914-63130933 | None:intergenic | 45.0% | |
| AGTTCAATGGAATCACCGGA+AGG | - | chr1.4:63131790-63131809 | MS.gene004921:CDS | 45.0% | |
| AGTTGCTTCTACCCTTGCTT+TGG | - | chr1.4:63131462-63131481 | MS.gene004921:intron | 45.0% | |
| ATTTGAAAGAGTGGCCAACC+AGG | + | chr1.4:63132154-63132173 | None:intergenic | 45.0% | |
| CATGGACAAGTAACAGAGGA+GGG | + | chr1.4:63130394-63130413 | None:intergenic | 45.0% | |
| CTAATTCAGGCCTGTCATCA+TGG | + | chr1.4:63132113-63132132 | None:intergenic | 45.0% | |
| GCTGCTTCCATAGAAACTTC+AGG | - | chr1.4:63130248-63130267 | MS.gene004921:CDS | 45.0% | |
| GGTTCTTGTGGATAGGAACA+AGG | + | chr1.4:63130114-63130133 | None:intergenic | 45.0% | |
| GTATGGAAATAAGGAGGCTG+TGG | - | chr1.4:63131654-63131673 | MS.gene004921:intron | 45.0% | |
| TCAATTGTAACAGGACCACC+AGG | - | chr1.4:63131916-63131935 | MS.gene004921:CDS | 45.0% | |
| TCTGCAGATCATTAGGGAAC+CGG | - | chr1.4:63131861-63131880 | MS.gene004921:CDS | 45.0% | |
| TTGCGGCTGCAATTGTAGTT+TGG | + | chr1.4:63130978-63130997 | None:intergenic | 45.0% | |
| TTTGAAAGAGTGGCCAACCA+GGG | + | chr1.4:63132153-63132172 | None:intergenic | 45.0% | |
| ! | AATTGCACTGGATTAGGTCC+TGG | + | chr1.4:63131937-63131956 | None:intergenic | 45.0% |
| ! | ACTCCAATTGATGGACCAGT+TGG | - | chr1.4:63132012-63132031 | MS.gene004921:CDS | 45.0% |
| ! | CTGTTACTTGTCCATGGCTT+TGG | - | chr1.4:63130398-63130417 | MS.gene004921:intron | 45.0% |
| AAGGCTCCTTCAGCATTTGC+CGG | + | chr1.4:63131883-63131902 | None:intergenic | 50.0% | |
| CAGCAGCAATGAGACAAGCA+AGG | + | chr1.4:63131247-63131266 | None:intergenic | 50.0% | |
| CCATGGACAAGTAACAGAGG+AGG | + | chr1.4:63130395-63130414 | None:intergenic | 50.0% | |
| CTGTTCATGCTTGAAGGGGT+TGG | - | chr1.4:63132078-63132097 | MS.gene004921:CDS | 50.0% | |
| GACATTGTCCCCATGATGAC+AGG | - | chr1.4:63132100-63132119 | MS.gene004921:CDS | 50.0% | |
| GGCACCAATTGCACTGGATT+AGG | + | chr1.4:63131943-63131962 | None:intergenic | 50.0% | |
| TGTGGATGATGAACTCGTGG+AGG | - | chr1.4:63131672-63131691 | MS.gene004921:intron | 50.0% | |
| ! | CCTCCTCTGTTACTTGTCCA+TGG | - | chr1.4:63130392-63130411 | MS.gene004921:intron | 50.0% |
| ! | TGTCTCATTGCTGCTGCTTC+AGG | - | chr1.4:63131251-63131270 | MS.gene004921:intron | 50.0% |
| ! | TTGGTGCTTCCATTCCTCAC+TGG | - | chr1.4:63130417-63130436 | MS.gene004921:intron | 50.0% |
| !! | GAATGGAAGCACCAAAGCCA+TGG | + | chr1.4:63130412-63130431 | None:intergenic | 50.0% |
| AGGGAACCGGCAAATGCTGA+AGG | - | chr1.4:63131874-63131893 | MS.gene004921:CDS | 55.0% | |
| ATACCTGCGCCAGTGAGGAA+TGG | + | chr1.4:63130429-63130448 | None:intergenic | 55.0% | |
| CAAACATACCTGCGCCAGTG+AGG | + | chr1.4:63130434-63130453 | None:intergenic | 55.0% | |
| GGCTGTGGATGATGAACTCG+TGG | - | chr1.4:63131669-63131688 | MS.gene004921:intron | 55.0% | |
| TACCATGGAAACATGGGCCG+AGG | - | chr1.4:63130894-63130913 | MS.gene004921:intron | 55.0% | |
| TACCTCGGCCCATGTTTCCA+TGG | + | chr1.4:63130899-63130918 | None:intergenic | 55.0% | |
| ! | GGAGCATCAGATAAGCCACC+AGG | - | chr1.4:63130862-63130881 | MS.gene004921:intron | 55.0% |
| ! | TGCACTGGATTAGGTCCTGG+TGG | + | chr1.4:63131934-63131953 | None:intergenic | 55.0% |
| CTTCCATTCCTCACTGGCGC+AGG | - | chr1.4:63130423-63130442 | MS.gene004921:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 63130038 | 63132179 | 63130038 | ID=MS.gene004921 |
| chr1.4 | mRNA | 63130038 | 63132179 | 63130038 | ID=MS.gene004921.t1;Parent=MS.gene004921 |
| chr1.4 | exon | 63131773 | 63132179 | 63131773 | ID=MS.gene004921.t1.exon1;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63131773 | 63132179 | 63131773 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| chr1.4 | exon | 63131302 | 63131413 | 63131302 | ID=MS.gene004921.t1.exon2;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63131302 | 63131413 | 63131302 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| chr1.4 | exon | 63130941 | 63131041 | 63130941 | ID=MS.gene004921.t1.exon3;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63130941 | 63131041 | 63130941 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| chr1.4 | exon | 63130668 | 63130856 | 63130668 | ID=MS.gene004921.t1.exon4;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63130668 | 63130856 | 63130668 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| chr1.4 | exon | 63130524 | 63130593 | 63130524 | ID=MS.gene004921.t1.exon5;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63130524 | 63130593 | 63130524 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| chr1.4 | exon | 63130038 | 63130349 | 63130038 | ID=MS.gene004921.t1.exon6;Parent=MS.gene004921.t1 |
| chr1.4 | CDS | 63130038 | 63130349 | 63130038 | ID=cds.MS.gene004921.t1;Parent=MS.gene004921.t1 |
| Gene Sequence |
| Protein sequence |
