AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63050.t1 MTR_5g056200 96.591 352 11 1 1 352 1 351 0.0 704
MS.gene63050.t1 MTR_1g076920 33.138 341 200 10 13 331 46 380 1.65e-53 181
MS.gene63050.t1 MTR_8g077185 33.987 306 168 8 60 351 84 369 2.11e-48 167
MS.gene63050.t1 MTR_4g036495 31.058 293 175 8 57 340 401 675 2.60e-33 130
MS.gene63050.t1 MTR_3g034670 24.398 332 213 9 55 348 126 457 1.55e-24 104
MS.gene63050.t1 MTR_8g010120 21.942 278 185 7 75 340 125 382 1.90e-12 68.2
MS.gene63050.t1 MTR_8g010120 21.942 278 185 7 75 340 85 342 2.43e-12 67.4
MS.gene63050.t1 MTR_2g102800 22.819 298 184 8 70 340 367 645 3.49e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63050.t1 AT5G19850 69.412 340 96 2 4 341 26 359 0.0 511
MS.gene63050.t1 AT4G36530 31.494 308 183 6 58 351 25 318 4.42e-47 162
MS.gene63050.t1 AT4G36530 31.494 308 183 6 58 351 82 375 1.92e-46 162
MS.gene63050.t1 AT5G38520 32.476 311 187 9 47 340 54 358 6.82e-46 160
MS.gene63050.t1 AT5G38520 31.366 322 186 9 48 340 55 370 4.59e-44 156
MS.gene63050.t1 AT4G25290 29.305 331 199 10 26 340 358 669 2.39e-29 119
MS.gene63050.t1 AT5G13800 25.938 320 196 8 66 347 126 442 9.84e-28 114
MS.gene63050.t1 AT5G13800 25.938 320 196 8 66 347 103 419 1.04e-27 113
MS.gene63050.t1 AT5G13800 25.938 320 196 8 66 347 103 419 1.04e-27 113
MS.gene63050.t1 AT5G13800 25.796 314 192 8 55 329 91 402 8.12e-26 107
MS.gene63050.t1 AT4G12830 23.466 277 186 6 75 342 132 391 1.41e-16 80.5

Find 87 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATACTCTATTGATCTTAT+TGG 0.166414 5.4:+44578560 MS.gene63050:CDS
TCTATTGATCTTATTGGATA+TGG 0.205615 5.4:+44578566 MS.gene63050:CDS
AATATTCGCTATCAATATTC+TGG 0.257699 5.4:+44577263 MS.gene63050:CDS
CCATGTATCAAACGTGTAAA+AGG 0.281790 5.4:-44578630 None:intergenic
TTCTTTATATGCAATTCTAT+TGG 0.304916 5.4:+44578701 MS.gene63050:CDS
TGCAGGAGTTGTAGGTCTTC+AGG 0.314699 5.4:+44578839 MS.gene63050:intron
ATCTGTACCTAAGCAATCTT+TGG 0.314812 5.4:-44578974 None:intergenic
CAACGGTCCTGCATTAGTTT+TGG 0.317095 5.4:+44577289 MS.gene63050:CDS
TCTCCAATTTGACGAGGATT+TGG 0.317385 5.4:-44578602 None:intergenic
AAACCAAATCCTCGTCAAAT+TGG 0.328365 5.4:+44578599 MS.gene63050:CDS
TCACCCCATGCTATCAAAAC+TGG 0.375505 5.4:-44580225 None:intergenic
TCCTTGGGAACCAATTGAAA+TGG 0.380847 5.4:+44580254 MS.gene63050:CDS
TAATTTCTTCCCATTTCAAT+TGG 0.387677 5.4:-44580264 None:intergenic
GAAAATGCAACGACACTGTT+TGG 0.390503 5.4:-44577061 None:intergenic
AAGAGGATAGTGTTCGAGGA+TGG 0.391260 5.4:-44577012 None:intergenic
ATTGAAATGGGAAGAAATTA+CGG 0.403502 5.4:+44580267 MS.gene63050:CDS
TGAGGGCAATGGCCAACATT+TGG 0.415552 5.4:-44580324 None:intergenic
TTACTCAGGAGGCCCTCTTC+CGG 0.423885 5.4:+44580081 MS.gene63050:CDS
CCCATTTCAATTGGTTCCCA+AGG 0.429222 5.4:-44580255 None:intergenic
CTTGAGTTTATTTGTTACTC+AGG 0.435166 5.4:+44580067 MS.gene63050:CDS
CTTAGTCCAGGGCTGGAACC+TGG 0.439933 5.4:+44580028 MS.gene63050:CDS
AGAATTCCCTTGCAGATTTG+TGG 0.439987 5.4:-44578876 None:intergenic
TTCATTGTCCTTCCAAATGT+TGG 0.443257 5.4:+44580312 MS.gene63050:CDS
TGGGGTAAGAGATGAAGATT+TGG 0.443933 5.4:-44582115 None:intergenic
TTTATATGCAATTCTATTGG+AGG 0.447257 5.4:+44578704 MS.gene63050:CDS
AGAGGATAGTGTTCGAGGAT+GGG 0.450570 5.4:-44577011 None:intergenic
TGCATGGTTTCGGAGCTAAC+AGG 0.452499 5.4:+44577312 MS.gene63050:CDS
CACTAGCTCATCGGTCACTT+TGG 0.454248 5.4:-44579996 None:intergenic
GTTCATTCCAAAGATTGCTT+AGG 0.456751 5.4:+44578967 MS.gene63050:CDS
GTGCAGCTCATCCTTAGTCC+AGG 0.460929 5.4:+44580016 MS.gene63050:CDS
TGTTATAGGGATACTTCTGT+TGG 0.462681 5.4:+44579073 MS.gene63050:intron
GGAGGAAACATACCTTTACT+TGG 0.464780 5.4:-44580117 None:intergenic
GAGTAAGAGGATAGTGTTCG+AGG 0.467291 5.4:-44577016 None:intergenic
CATGGGGTGACAAGGATCCT+TGG 0.467501 5.4:+44580238 MS.gene63050:CDS
CACTTCATTGCAGTGATCAC+TGG 0.468988 5.4:+44578501 MS.gene63050:intron
AAATGTTGGCCATTGCCCTC+AGG 0.470508 5.4:+44580326 MS.gene63050:CDS
ATATTCGCTATCAATATTCT+GGG 0.476186 5.4:+44577264 MS.gene63050:CDS
CAGGTTCCAGCCCTGGACTA+AGG 0.476545 5.4:-44580027 None:intergenic
GTACTTGTAGCATGTGGAAT+TGG 0.478100 5.4:+44577231 MS.gene63050:intron
CCCACTTGTGGAGTCATTTG+TGG 0.479333 5.4:+44582083 MS.gene63050:CDS
GGTAGCAGTTCCTCCGGAAG+AGG 0.481343 5.4:-44580094 None:intergenic
ATGGGGTGACAAGGATCCTT+GGG 0.486295 5.4:+44580239 MS.gene63050:CDS
CCTTGGGAACCAATTGAAAT+GGG 0.489134 5.4:+44580255 MS.gene63050:CDS
GGAGAGAGTGAGCGTAGTGG+TGG 0.491420 5.4:-44576990 None:intergenic
TTCATATAAAGAAGCAGCCT+TGG 0.511606 5.4:+44578925 MS.gene63050:CDS
ACAGCACCAGGTTCCAGCCC+TGG 0.513560 5.4:-44580034 None:intergenic
GCTCATCCTTAGTCCAGGGC+TGG 0.515765 5.4:+44580021 MS.gene63050:CDS
GTTCTGTCTTGATGTCGTTA+AGG 0.525289 5.4:+44578670 MS.gene63050:CDS
GAGTTTATTTGTTACTCAGG+AGG 0.533102 5.4:+44580070 MS.gene63050:CDS
GTAGCAGTTCCTCCGGAAGA+GGG 0.538863 5.4:-44580093 None:intergenic
TTGTAGCATGTGGAATTGGA+AGG 0.541812 5.4:+44577235 MS.gene63050:intron
CAGGGAATCAATCAACTGAT+GGG 0.544170 5.4:-44582134 None:intergenic
GAGGAAACATACCTTTACTT+GGG 0.545671 5.4:-44580116 None:intergenic
GCAACGACACTGTTTGGTTG+AGG 0.546785 5.4:-44577055 None:intergenic
CTTTGGAATGAACTGATGAA+AGG 0.547460 5.4:-44578957 None:intergenic
TACGCAAAGATATATTAAGA+AGG 0.556446 5.4:-44578899 None:intergenic
TGCAGCTCATCCTTAGTCCA+GGG 0.557489 5.4:+44580017 MS.gene63050:CDS
ACTTGGGGTAGCAGTTCCTC+CGG 0.557985 5.4:-44580100 None:intergenic
TCAACTTGTGAACCCACTTG+TGG 0.558784 5.4:+44582071 MS.gene63050:CDS
TTGTGGAGTCATTTGTGGCA+CGG 0.566169 5.4:+44582088 MS.gene63050:CDS
CCATGCACCAAAACTAATGC+AGG 0.568163 5.4:-44577296 None:intergenic
ACAAGTGGGTTCACAAGTTG+AGG 0.568774 5.4:-44582069 None:intergenic
GCCACAAATGACTCCACAAG+TGG 0.574429 5.4:-44582084 None:intergenic
ACAGGGAATCAATCAACTGA+TGG 0.579224 5.4:-44582135 None:intergenic
TGTAGCATGTGGAATTGGAA+GGG 0.581070 5.4:+44577236 MS.gene63050:intron
ATGGGAGAGAGTGAGCGTAG+TGG 0.584324 5.4:-44576993 None:intergenic
GAGAAAGAACCTGAGGGCAA+TGG 0.584329 5.4:-44580335 None:intergenic
AACAGAACCACAAATCTGCA+AGG 0.584434 5.4:+44578869 MS.gene63050:CDS
GGAACTGCTACCCCAAGTAA+AGG 0.586278 5.4:+44580105 MS.gene63050:CDS
TTTGATAGCATGGGGTGACA+AGG 0.592808 5.4:+44580230 MS.gene63050:CDS
GATGAGCTGCACTAGCTCAT+CGG 0.595522 5.4:-44580005 None:intergenic
ATCAATAGAGTATACACGGT+GGG 0.595926 5.4:-44578552 None:intergenic
GGCAATGGCCAACATTTGGA+AGG 0.602468 5.4:-44580320 None:intergenic
ACAGAACCACAAATCTGCAA+GGG 0.606953 5.4:+44578870 MS.gene63050:CDS
CTCAGGAGGCCCTCTTCCGG+AGG 0.608570 5.4:+44580084 MS.gene63050:CDS
AGAAAGACATCTACAGCACC+AGG 0.613950 5.4:-44580046 None:intergenic
ACAGAACTCATTTAATTGTG+CGG 0.626061 5.4:-44578654 None:intergenic
AGGAAACATACCTTTACTTG+GGG 0.643291 5.4:-44580115 None:intergenic
TTCATTGCAGTGATCACTGG+AGG 0.653001 5.4:+44578504 MS.gene63050:intron
AAGAGCTCGATGTTCAAACC+AGG 0.666733 5.4:+44577128 MS.gene63050:CDS
AGGGAATCAATCAACTGATG+GGG 0.671099 5.4:-44582133 None:intergenic
TATCAATATTCTGGGAACAA+CGG 0.681480 5.4:+44577272 MS.gene63050:CDS
ATGAAAGGTCTTGCATACCA+AGG 0.685966 5.4:-44578942 None:intergenic
GAATCGTCTCCAATTTGACG+AGG 0.688025 5.4:-44578608 None:intergenic
TAAGATCAATAGAGTATACA+CGG 0.690646 5.4:-44578556 None:intergenic
CCACAAATGACTCCACAAGT+GGG 0.691468 5.4:-44582083 None:intergenic
GATCAATAGAGTATACACGG+TGG 0.791426 5.4:-44578553 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCAAGAATTAAAAAA+AGG - chr5.4:44578323-44578342 None:intergenic 10.0%
!! AATAGAATAGTAATTAAAGA+GGG + chr5.4:44577553-44577572 MS.gene63050:intron 15.0%
!! ATAGATAATTGAGTATTATT+GGG - chr5.4:44579497-44579516 None:intergenic 15.0%
!! ATATAAAGAATGATACAAAT+TGG - chr5.4:44579897-44579916 None:intergenic 15.0%
!! ATATCACATATTTATTGTAA+GGG + chr5.4:44578428-44578447 MS.gene63050:intron 15.0%
!! ATTTATGTAAAACATCATTA+TGG - chr5.4:44581877-44581896 None:intergenic 15.0%
!! TAGTCATTGAAAAATTATAT+AGG + chr5.4:44577431-44577450 MS.gene63050:intron 15.0%
!! TATATCACATATTTATTGTA+AGG + chr5.4:44578427-44578446 MS.gene63050:intron 15.0%
!! AAAACAAGCATTAAAGAAAA+AGG - chr5.4:44581904-44581923 None:intergenic 20.0%
!! AAAATAATAGTATAGGACAA+TGG - chr5.4:44581566-44581585 None:intergenic 20.0%
!! AATAATCTATAAATAACCCA+TGG + chr5.4:44577935-44577954 MS.gene63050:intron 20.0%
!! AATTAGATAACAGAATGTAA+AGG - chr5.4:44580738-44580757 None:intergenic 20.0%
!! ATTAACTTATAAAATCCGAT+GGG + chr5.4:44581367-44581386 MS.gene63050:intron 20.0%
!! ATTATTCTCATAGTCAAAAT+AGG - chr5.4:44581706-44581725 None:intergenic 20.0%
!! CATAGATAATTGAGTATTAT+TGG - chr5.4:44579498-44579517 None:intergenic 20.0%
!! CCATATATATATAAAGAAAC+AGG - chr5.4:44578280-44578299 None:intergenic 20.0%
!! CTATATTTAAACAATGTTAC+AGG + chr5.4:44579201-44579220 MS.gene63050:intron 20.0%
!! CTGTAACATTGTTTAAATAT+AGG - chr5.4:44579203-44579222 None:intergenic 20.0%
!! GAATAGAATAGTAATTAAAG+AGG + chr5.4:44577552-44577571 MS.gene63050:intron 20.0%
!! TATAACATAAAGCTTGATAA+TGG - chr5.4:44579060-44579079 None:intergenic 20.0%
!! TCAAGAATTAAAAAAAGGTA+TGG - chr5.4:44578318-44578337 None:intergenic 20.0%
!! TCAAGTCTATTAGAAAATAT+TGG + chr5.4:44580679-44580698 MS.gene63050:intron 20.0%
!! TCTTTATATATTGACAAACA+AGG + chr5.4:44579908-44579927 MS.gene63050:intron 20.0%
!! TTAATTGAAATGAAAGAACA+TGG - chr5.4:44578390-44578409 None:intergenic 20.0%
!! TTATATCTGATTGGTATAAA+AGG - chr5.4:44581747-44581766 None:intergenic 20.0%
!! TTCATTTCAATTAAAAATGC+AGG + chr5.4:44578396-44578415 MS.gene63050:intron 20.0%
!! TTCTTTATATGCAATTCTAT+TGG + chr5.4:44578701-44578720 MS.gene63050:CDS 20.0%
!! TTTCATTTCTTATATCAGAA+AGG + chr5.4:44581818-44581837 MS.gene63050:intron 20.0%
!!! ATTATCAAGCTTTATGTTAT+AGG + chr5.4:44579059-44579078 MS.gene63050:intron 20.0%
!!! CCTGTTTCTTTATATATATA+TGG + chr5.4:44578277-44578296 MS.gene63050:intron 20.0%
!!! CTTTTACATAAACTTTTGAA+CGG - chr5.4:44578207-44578226 None:intergenic 20.0%
!!! GAGTTATTTATCAATTTTCT+GGG + chr5.4:44579644-44579663 MS.gene63050:intron 20.0%
!!! TCGAATAATTTAAAATAACC+TGG - chr5.4:44578767-44578786 None:intergenic 20.0%
!!! TGAGTTATTTATCAATTTTC+TGG + chr5.4:44579643-44579662 MS.gene63050:intron 20.0%
!!! TGGTCTTAAAATAATAGTAT+AGG - chr5.4:44581573-44581592 None:intergenic 20.0%
!!! TTATCAAGCTTTATGTTATA+GGG + chr5.4:44579060-44579079 MS.gene63050:intron 20.0%
!!! TTTTTCTTTAATGCTTGTTT+TGG + chr5.4:44581903-44581922 MS.gene63050:intron 20.0%
!!! TTTTTTATTGTGCAAATTGA+AGG - chr5.4:44577508-44577527 None:intergenic 20.0%
! AACAAGTTTAAAAAGTTACC+TGG - chr5.4:44577149-44577168 None:intergenic 25.0%
! AACGAATAACTCAAACTTTA+TGG + chr5.4:44579533-44579552 MS.gene63050:intron 25.0%
! AAGTACTTAATGATCTCTAT+CGG + chr5.4:44581162-44581181 MS.gene63050:intron 25.0%
! AATATTCGCTATCAATATTC+TGG + chr5.4:44577263-44577282 MS.gene63050:CDS 25.0%
! AATTATTGCTCAAATCTGAT+TGG - chr5.4:44581114-44581133 None:intergenic 25.0%
! ATAAGCACTTGTAAACTATT+TGG - chr5.4:44577991-44578010 None:intergenic 25.0%
! ATATTCGCTATCAATATTCT+GGG + chr5.4:44577264-44577283 MS.gene63050:CDS 25.0%
! ATTGAAATGGGAAGAAATTA+CGG + chr5.4:44580267-44580286 MS.gene63050:CDS 25.0%
! ATTTGAGCAATAATTACTGA+TGG + chr5.4:44581119-44581138 MS.gene63050:intron 25.0%
! CATAAGTGTTTGATATTGTT+AGG - chr5.4:44579858-44579877 None:intergenic 25.0%
! CTAATTGACTAGTATTTAGT+TGG + chr5.4:44580752-44580771 MS.gene63050:intron 25.0%
! GATTAACTTATAAAATCCGA+TGG + chr5.4:44581366-44581385 MS.gene63050:intron 25.0%
! GCAATTATATATTCACCTAT+TGG - chr5.4:44580870-44580889 None:intergenic 25.0%
! GGAATTTAATTGTCTAACTA+CGG + chr5.4:44580806-44580825 MS.gene63050:intron 25.0%
! GTAAAGATCTGTATAATTCA+TGG - chr5.4:44578249-44578268 None:intergenic 25.0%
! GTATACTCTATTGATCTTAT+TGG + chr5.4:44578560-44578579 MS.gene63050:CDS 25.0%
! TAAGATCAATAGAGTATACA+CGG - chr5.4:44578559-44578578 None:intergenic 25.0%
! TAAGCACTTGTAAACTATTT+GGG - chr5.4:44577990-44578009 None:intergenic 25.0%
! TAATTTCTTCCCATTTCAAT+TGG - chr5.4:44580267-44580286 None:intergenic 25.0%
! TACGCAAAGATATATTAAGA+AGG - chr5.4:44578902-44578921 None:intergenic 25.0%
! TATTGTTAGGACTTAGAAAT+AGG - chr5.4:44579845-44579864 None:intergenic 25.0%
! TCTATTGATCTTATTGGATA+TGG + chr5.4:44578566-44578585 MS.gene63050:CDS 25.0%
! TGAATTATACAGATCTTTAC+CGG + chr5.4:44578249-44578268 MS.gene63050:intron 25.0%
! TTCAATCTGTCATCTATATA+CGG + chr5.4:44581513-44581532 MS.gene63050:intron 25.0%
! TTCACAATTAGTATAGTTTC+AGG - chr5.4:44579943-44579962 None:intergenic 25.0%
! TTGATATTTAATTACTGACC+AGG + chr5.4:44578746-44578765 MS.gene63050:intron 25.0%
! TTTATATGCAATTCTATTGG+AGG + chr5.4:44578704-44578723 MS.gene63050:CDS 25.0%
! TTTCTTATTAACCAACAACA+AGG - chr5.4:44581050-44581069 None:intergenic 25.0%
!! ATGACTTTGACTTTATATGT+AGG - chr5.4:44580548-44580567 None:intergenic 25.0%
!! CATTAAAAGTGGTTTTCATT+TGG + chr5.4:44581778-44581797 MS.gene63050:intron 25.0%
!! CGGATTTTATAAGTTAATCA+CGG - chr5.4:44581365-44581384 None:intergenic 25.0%
!! TTCATTTTGAACGGTTAATT+TGG - chr5.4:44577110-44577129 None:intergenic 25.0%
!!! AAAACCACTTTTAATGTGAA+CGG - chr5.4:44581774-44581793 None:intergenic 25.0%
!!! AATACATATTGATGGTGTAT+CGG + chr5.4:44577697-44577716 MS.gene63050:intron 25.0%
!!! CGTCAACATTTTTTTTTTTG+AGG + chr5.4:44580514-44580533 MS.gene63050:intron 25.0%
!!! TTAAACGATCAAGTCATTTT+TGG - chr5.4:44581593-44581612 None:intergenic 25.0%
!!! TTCTTAATCTCATTTTTCTC+CGG + chr5.4:44577345-44577364 MS.gene63050:intron 25.0%
!!! TTGAATTTTTTCATGAGTAC+TGG + chr5.4:44578334-44578353 MS.gene63050:intron 25.0%
AAAAAGTGGATGTCACAAAA+AGG - chr5.4:44580449-44580468 None:intergenic 30.0%
AAATACTCCAAAAACAGAGA+CGG - chr5.4:44577795-44577814 None:intergenic 30.0%
AACAGTAACATCACAAAAAG+TGG - chr5.4:44580463-44580482 None:intergenic 30.0%
AAGATCTGTATAATTCATGG+AGG - chr5.4:44578246-44578265 None:intergenic 30.0%
AATCAGATAGTATTCTTACG+TGG + chr5.4:44577184-44577203 MS.gene63050:intron 30.0%
AATGTTCATAGTTGGACATA+AGG - chr5.4:44580636-44580655 None:intergenic 30.0%
AATTATACAGATCTTTACCG+GGG + chr5.4:44578251-44578270 MS.gene63050:intron 30.0%
ACAAAAATCAGTAGACAGAT+AGG - chr5.4:44581635-44581654 None:intergenic 30.0%
ACACCATCAATATGTATTGA+AGG - chr5.4:44577695-44577714 None:intergenic 30.0%
ACAGAACTCATTTAATTGTG+CGG - chr5.4:44578657-44578676 None:intergenic 30.0%
ACTCCTTCAATACATATTGA+TGG + chr5.4:44577689-44577708 MS.gene63050:intron 30.0%
ATAAGGATCACTGTGTTAAT+TGG - chr5.4:44580619-44580638 None:intergenic 30.0%
ATAGAAAGAAAGCAAGTGAA+TGG - chr5.4:44580366-44580385 None:intergenic 30.0%
ATAGTATTCTTACGTGGAAT+TGG + chr5.4:44577190-44577209 MS.gene63050:intron 30.0%
CAAAAATCAGTAGACAGATA+GGG - chr5.4:44581634-44581653 None:intergenic 30.0%
CTAAATTAGCTCACCAAAAT+TGG - chr5.4:44578149-44578168 None:intergenic 30.0%
CTCCTGCACAAAAATAATAT+CGG - chr5.4:44578827-44578846 None:intergenic 30.0%
GAAGCTTATTTCACTATCAA+TGG - chr5.4:44581845-44581864 None:intergenic 30.0%
GAATTATACAGATCTTTACC+GGG + chr5.4:44578250-44578269 MS.gene63050:intron 30.0%
GATAGAGATCATTAAGTACT+TGG - chr5.4:44581163-44581182 None:intergenic 30.0%
GGAGAAAAATGAGATTAAGA+AGG - chr5.4:44577346-44577365 None:intergenic 30.0%
TAAGATATCAACCATCTTGA+GGG - chr5.4:44581253-44581272 None:intergenic 30.0%
TAAGGATCACTGTGTTAATT+GGG - chr5.4:44580618-44580637 None:intergenic 30.0%
TAGAAATAGGCCTTTATTCT+TGG - chr5.4:44579832-44579851 None:intergenic 30.0%
TATTAACCAACAACAAGGAT+TGG - chr5.4:44581045-44581064 None:intergenic 30.0%
TCATGTTCAAACATTAAGCA+GGG + chr5.4:44579028-44579047 MS.gene63050:intron 30.0%
TGTTTAGATATACGCTATCT+AGG + chr5.4:44577900-44577919 MS.gene63050:intron 30.0%
TTCATGTTCAAACATTAAGC+AGG + chr5.4:44579027-44579046 MS.gene63050:intron 30.0%
TTTATTGTGCAAATTGAAGG+AGG - chr5.4:44577505-44577524 None:intergenic 30.0%
! CATTTTTCTCTGCTTATTGT+AGG - chr5.4:44579286-44579305 None:intergenic 30.0%
! CTTGAGTTTATTTGTTACTC+AGG + chr5.4:44580067-44580086 MS.gene63050:CDS 30.0%
! CTTTTACACGTTTGATACAT+GGG + chr5.4:44578631-44578650 MS.gene63050:CDS 30.0%
! GCAGATGTATCTAGAATATA+GGG - chr5.4:44581432-44581451 None:intergenic 30.0%
! TATCAATATTCTGGGAACAA+CGG + chr5.4:44577272-44577291 MS.gene63050:CDS 30.0%
! TATTTTGTACTTGTAGCATG+TGG + chr5.4:44577225-44577244 MS.gene63050:intron 30.0%
! TTAATCACGGAACATTTTAG+AGG - chr5.4:44581352-44581371 None:intergenic 30.0%
! TTGAGGAGAACGAATATTTT+TGG - chr5.4:44577041-44577060 None:intergenic 30.0%
! TTTGAGTTATTCGTTGTTCT+GGG - chr5.4:44579528-44579547 None:intergenic 30.0%
!! TTTGATTGATTCGGACTATT+TGG - chr5.4:44578041-44578060 None:intergenic 30.0%
!!! ACGAATATTTTTGGAGTAAG+AGG - chr5.4:44577032-44577051 None:intergenic 30.0%
!!! TCTCTGTTTTTGGAGTATTT+GGG + chr5.4:44577795-44577814 MS.gene63050:intron 30.0%
!!! TTACGGAAATTTTGATTCAG+TGG + chr5.4:44580284-44580303 MS.gene63050:CDS 30.0%
!!! TTCCGATATTATTTTTGTGC+AGG + chr5.4:44578822-44578841 MS.gene63050:intron 30.0%
AAAAATGCAAACACTCTGAC+GGG + chr5.4:44579299-44579318 MS.gene63050:intron 35.0%
AAACCAAATCCTCGTCAAAT+TGG + chr5.4:44578599-44578618 MS.gene63050:CDS 35.0%
AAATAGGCCTTTATTCTTGG+AGG - chr5.4:44579829-44579848 None:intergenic 35.0%
AACGGTCACTTATATCTGAT+TGG - chr5.4:44581756-44581775 None:intergenic 35.0%
AATATAGGGATGTGCATGAA+AGG - chr5.4:44581418-44581437 None:intergenic 35.0%
AATCTGTCATCTATATACGG+AGG + chr5.4:44581516-44581535 MS.gene63050:intron 35.0%
ACTATCTGTATGACATGGTA+GGG - chr5.4:44581458-44581477 None:intergenic 35.0%
AGAATGATACAAATTGGAGC+TGG - chr5.4:44579891-44579910 None:intergenic 35.0%
AGGAAACATACCTTTACTTG+GGG - chr5.4:44580118-44580137 None:intergenic 35.0%
AGTCAAGCATCTTCCAAAAA+GGG + chr5.4:44580931-44580950 MS.gene63050:intron 35.0%
ATAGAGTAAGGAGAGAATGT+AGG - chr5.4:44579360-44579379 None:intergenic 35.0%
ATCAATAGAGTATACACGGT+GGG - chr5.4:44578555-44578574 None:intergenic 35.0%
ATCAATCAAATAGTCCCACT+TGG + chr5.4:44578051-44578070 MS.gene63050:intron 35.0%
ATCGAGTATTATGAGATGCT+CGG - chr5.4:44579460-44579479 None:intergenic 35.0%
ATCTGTACCTAAGCAATCTT+TGG - chr5.4:44578977-44578996 None:intergenic 35.0%
ATGAAAGGAATGACTTCTGA+CGG - chr5.4:44581403-44581422 None:intergenic 35.0%
CATCTCATAATACTCGATGA+GGG + chr5.4:44579462-44579481 MS.gene63050:intron 35.0%
CATGTTCAAACATTAAGCAG+GGG + chr5.4:44579029-44579048 MS.gene63050:intron 35.0%
CCATGTATCAAACGTGTAAA+AGG - chr5.4:44578633-44578652 None:intergenic 35.0%
GAAAAATGCAAACACTCTGA+CGG + chr5.4:44579298-44579317 MS.gene63050:intron 35.0%
GAAAACGAGTTCATCTATAG+AGG - chr5.4:44580581-44580600 None:intergenic 35.0%
GAACCTATTGCAACATTAAG+TGG + chr5.4:44581961-44581980 MS.gene63050:intron 35.0%
GAACGTTTACAAATAGTGCA+AGG - chr5.4:44581330-44581349 None:intergenic 35.0%
GAATGCACTAACATTTGTCT+GGG + chr5.4:44580785-44580804 MS.gene63050:intron 35.0%
GAGGAAACATACCTTTACTT+GGG - chr5.4:44580119-44580138 None:intergenic 35.0%
GTAAGATATCAACCATCTTG+AGG - chr5.4:44581254-44581273 None:intergenic 35.0%
GTGGGACTATTTGATTGATT+CGG - chr5.4:44578050-44578069 None:intergenic 35.0%
GTTAACTGTCCATTTCATGA+AGG + chr5.4:44582038-44582057 MS.gene63050:intron 35.0%
GTTCATTCCAAAGATTGCTT+AGG + chr5.4:44578967-44578986 MS.gene63050:CDS 35.0%
TATAAAGAAACAGGTTTCCC+CGG - chr5.4:44578271-44578290 None:intergenic 35.0%
TCAATCAAATAGTCCCACTT+GGG + chr5.4:44578052-44578071 MS.gene63050:intron 35.0%
TCGTCAAGCTAGTATATTTG+TGG - chr5.4:44581018-44581037 None:intergenic 35.0%
TCTATTGATGTCAAGCACTT+GGG + chr5.4:44579375-44579394 MS.gene63050:intron 35.0%
TCTTCCAAAAAGGGTTAACA+TGG + chr5.4:44580940-44580959 MS.gene63050:intron 35.0%
TGAATGCACTAACATTTGTC+TGG + chr5.4:44580784-44580803 MS.gene63050:intron 35.0%
TGACCACTTAATGTTGCAAT+AGG - chr5.4:44581967-44581986 None:intergenic 35.0%
TGCTTGACATCAATAGAGTA+AGG - chr5.4:44579372-44579391 None:intergenic 35.0%
TGTTAAGCTAGAAGAATACC+TGG - chr5.4:44579153-44579172 None:intergenic 35.0%
TGTTATAGGGATACTTCTGT+TGG + chr5.4:44579073-44579092 MS.gene63050:intron 35.0%
TTCATATAAAGAAGCAGCCT+TGG + chr5.4:44578925-44578944 MS.gene63050:CDS 35.0%
TTCATTGTCCTTCCAAATGT+TGG + chr5.4:44580312-44580331 MS.gene63050:CDS 35.0%
TTCTAATGTAACTCCTCTTC+TGG - chr5.4:44579679-44579698 None:intergenic 35.0%
TTGAGTTATTCGTTGTTCTG+GGG - chr5.4:44579527-44579546 None:intergenic 35.0%
! AACAACTTATGACTTGTCCA+TGG - chr5.4:44577955-44577974 None:intergenic 35.0%
! ACAACTTATGACTTGTCCAT+GGG - chr5.4:44577954-44577973 None:intergenic 35.0%
! ATAGAGATCGGTTTCTGATA+CGG + chr5.4:44577767-44577786 MS.gene63050:intron 35.0%
! ATCGAGCTCTTCATTTTGAA+CGG - chr5.4:44577119-44577138 None:intergenic 35.0%
! ATTGTAAGGGTCTTATAGCT+AGG + chr5.4:44578441-44578460 MS.gene63050:intron 35.0%
! CCTTTTACACGTTTGATACA+TGG + chr5.4:44578630-44578649 MS.gene63050:CDS 35.0%
! GAGTTTATTTGTTACTCAGG+AGG + chr5.4:44580070-44580089 MS.gene63050:CDS 35.0%
! GGCAGATGTATCTAGAATAT+AGG - chr5.4:44581433-44581452 None:intergenic 35.0%
! GTTTGAGTTATTCGTTGTTC+TGG - chr5.4:44579529-44579548 None:intergenic 35.0%
! TGTGAAGAACATTTTATGCC+AGG + chr5.4:44579132-44579151 MS.gene63050:CDS 35.0%
!! ACACTTTGAAATAGTCATGG+TGG - chr5.4:44580979-44580998 None:intergenic 35.0%
!! ATATATTCACCTATTGGCTC+AGG - chr5.4:44580864-44580883 None:intergenic 35.0%
!! CACTTTGAAATAGTCATGGT+GGG - chr5.4:44580978-44580997 None:intergenic 35.0%
!! CGAACACTTTGAAATAGTCA+TGG - chr5.4:44580982-44581001 None:intergenic 35.0%
!! CTTTGGAATGAACTGATGAA+AGG - chr5.4:44578960-44578979 None:intergenic 35.0%
!! TATTTTTGTGCAGGAGTTGT+AGG + chr5.4:44578831-44578850 MS.gene63050:intron 35.0%
!!! CTTCGATAGCTAGCTTTTAA+GGG - chr5.4:44579408-44579427 None:intergenic 35.0%
!!! GTCTCTGTTTTTGGAGTATT+TGG + chr5.4:44577794-44577813 MS.gene63050:intron 35.0%
!!! TCTTCGATAGCTAGCTTTTA+AGG - chr5.4:44579409-44579428 None:intergenic 35.0%
!!! TTAGTTTTGGTGCATGGTTT+CGG + chr5.4:44577302-44577321 MS.gene63050:CDS 35.0%
AAAAGGCCACAGCCTTAATT+GGG - chr5.4:44579794-44579813 None:intergenic 40.0%
AAAATGACCACGATGTCACT+AGG + chr5.4:44581490-44581509 MS.gene63050:intron 40.0%
AACAGAACCACAAATCTGCA+AGG + chr5.4:44578869-44578888 MS.gene63050:CDS 40.0%
AACCAACAACAAGGATTGGA+AGG - chr5.4:44581041-44581060 None:intergenic 40.0%
AACCAGATACAATGCTTCCT+AGG + chr5.4:44579768-44579787 MS.gene63050:intron 40.0%
AACTTCCCACTTCCTCATAT+AGG - chr5.4:44580146-44580165 None:intergenic 40.0%
ACAGAACCACAAATCTGCAA+GGG + chr5.4:44578870-44578889 MS.gene63050:CDS 40.0%
ACATTTATGAGACGTATGCG+AGG + chr5.4:44577590-44577609 MS.gene63050:intron 40.0%
ACTCCACTATCTGTATGACA+TGG - chr5.4:44581463-44581482 None:intergenic 40.0%
ACTTCCCACTTCCTCATATA+GGG - chr5.4:44580145-44580164 None:intergenic 40.0%
AGAATTCCCTTGCAGATTTG+TGG - chr5.4:44578879-44578898 None:intergenic 40.0%
AGGTGATTAGATGCTGTTGA+GGG - chr5.4:44579340-44579359 None:intergenic 40.0%
ATAATACTCGATGAGGGACT+TGG + chr5.4:44579468-44579487 MS.gene63050:intron 40.0%
ATGAAAGGTCTTGCATACCA+AGG - chr5.4:44578945-44578964 None:intergenic 40.0%
ATTGCGTTAGGAATGTCGAT+AGG + chr5.4:44580653-44580672 MS.gene63050:intron 40.0%
CACTATCTGTATGACATGGT+AGG - chr5.4:44581459-44581478 None:intergenic 40.0%
CACTGTGTTAATTGGGAGTT+TGG - chr5.4:44580611-44580630 None:intergenic 40.0%
CCAACTATGAACATTGCGTT+AGG + chr5.4:44580641-44580660 MS.gene63050:intron 40.0%
CCTAACGCAATGTTCATAGT+TGG - chr5.4:44580644-44580663 None:intergenic 40.0%
CCTTGGGAACCAATTGAAAT+GGG + chr5.4:44580255-44580274 MS.gene63050:CDS 40.0%
CTACCATGTCATACAGATAG+TGG + chr5.4:44581457-44581476 MS.gene63050:intron 40.0%
CTATTGATGTCAAGCACTTG+GGG + chr5.4:44579376-44579395 MS.gene63050:intron 40.0%
CTCCGGTGTTCATTGAATAT+CGG + chr5.4:44577362-44577381 MS.gene63050:intron 40.0%
CTCTATTGATGTCAAGCACT+TGG + chr5.4:44579374-44579393 MS.gene63050:intron 40.0%
GAAAATGCAACGACACTGTT+TGG - chr5.4:44577064-44577083 None:intergenic 40.0%
GAATGAGAGAAAGAACCTGA+GGG - chr5.4:44580344-44580363 None:intergenic 40.0%
GACCGATATTCAATGAACAC+CGG - chr5.4:44577367-44577386 None:intergenic 40.0%
GACTTATTTGAGCTAACCTC+AGG - chr5.4:44578015-44578034 None:intergenic 40.0%
GAGTCAAGCATCTTCCAAAA+AGG + chr5.4:44580930-44580949 MS.gene63050:intron 40.0%
GATCAATAGAGTATACACGG+TGG - chr5.4:44578556-44578575 None:intergenic 40.0%
GCATCTCATAATACTCGATG+AGG + chr5.4:44579461-44579480 MS.gene63050:intron 40.0%
GGAGGAAACATACCTTTACT+TGG - chr5.4:44580120-44580139 None:intergenic 40.0%
GTACTTGTAGCATGTGGAAT+TGG + chr5.4:44577231-44577250 MS.gene63050:intron 40.0%
GTCTTATAGCTAGGTCTGTT+TGG + chr5.4:44578450-44578469 MS.gene63050:intron 40.0%
GTGACCGTTCACATTAAAAG+TGG + chr5.4:44581767-44581786 MS.gene63050:intron 40.0%
GTGCTTCATCCTTCATGAAA+TGG - chr5.4:44582050-44582069 None:intergenic 40.0%
GTTCTGTCTTGATGTCGTTA+AGG + chr5.4:44578670-44578689 MS.gene63050:CDS 40.0%
TAGGTGATTAGATGCTGTTG+AGG - chr5.4:44579341-44579360 None:intergenic 40.0%
TCCTTGGGAACCAATTGAAA+TGG + chr5.4:44580254-44580273 MS.gene63050:CDS 40.0%
TCGAGTATTATGAGATGCTC+GGG - chr5.4:44579459-44579478 None:intergenic 40.0%
TCTCCAATTTGACGAGGATT+TGG - chr5.4:44578605-44578624 None:intergenic 40.0%
TGAAAGGAATGACTTCTGAC+GGG - chr5.4:44581402-44581421 None:intergenic 40.0%
TGGGGTAAGAGATGAAGATT+TGG - chr5.4:44582118-44582137 None:intergenic 40.0%
TGTAGCATGTGGAATTGGAA+GGG + chr5.4:44577236-44577255 MS.gene63050:intron 40.0%
TTGTAGCATGTGGAATTGGA+AGG + chr5.4:44577235-44577254 MS.gene63050:intron 40.0%
TTTACAAGTGCTTATGCCTG+AGG + chr5.4:44577996-44578015 MS.gene63050:intron 40.0%
! AGCACCATGTTAACCCTTTT+TGG - chr5.4:44580947-44580966 None:intergenic 40.0%
! AGGGTTAACATGGTGCTAAA+AGG + chr5.4:44580950-44580969 MS.gene63050:intron 40.0%
! TATCGGTGCTTCATAGAGAT+CGG + chr5.4:44577755-44577774 MS.gene63050:intron 40.0%
! TGATCGTTTAAGTGTTGCAC+AGG + chr5.4:44581602-44581621 MS.gene63050:intron 40.0%
!! AGTGACATCGTGGTCATTTT+CGG - chr5.4:44581490-44581509 None:intergenic 40.0%
!! AGTGTCCAGTTTTGATAGCA+TGG + chr5.4:44580220-44580239 MS.gene63050:intron 40.0%
!! GATTGGTATAAAAGGCACTC+TGG - chr5.4:44581739-44581758 None:intergenic 40.0%
!! GTGTCCAGTTTTGATAGCAT+GGG + chr5.4:44580221-44580240 MS.gene63050:intron 40.0%
!! TGTCCAGTTTTGATAGCATG+GGG + chr5.4:44580222-44580241 MS.gene63050:CDS 40.0%
!!! TTCAGTTTTGAGCATCAGCA+AGG - chr5.4:44579263-44579282 None:intergenic 40.0%
AACCATCTTGAGGGTGATAC+AGG - chr5.4:44581244-44581263 None:intergenic 45.0%
AAGAGCTCGATGTTCAAACC+AGG + chr5.4:44577128-44577147 MS.gene63050:CDS 45.0%
AAGAGGATAGTGTTCGAGGA+TGG - chr5.4:44577015-44577034 None:intergenic 45.0%
ACGAACACGATACAGGGTAT+CGG + chr5.4:44577395-44577414 MS.gene63050:intron 45.0%
AGAAAGACATCTACAGCACC+AGG - chr5.4:44580049-44580068 None:intergenic 45.0%
AGAAAGGGAAACCTACGGAA+GGG - chr5.4:44579563-44579582 None:intergenic 45.0%
AGAGGATAGTGTTCGAGGAT+GGG - chr5.4:44577014-44577033 None:intergenic 45.0%
AGCTCAGAAAGGGAAACCTA+CGG - chr5.4:44579568-44579587 None:intergenic 45.0%
AGGCCTTTATTCTTGGAGGA+AGG - chr5.4:44579825-44579844 None:intergenic 45.0%
ATGAAGCACGAACACGATAC+AGG + chr5.4:44577388-44577407 MS.gene63050:intron 45.0%
ATGCTTCCTAGGCCCAATTA+AGG + chr5.4:44579779-44579798 MS.gene63050:intron 45.0%
CACTTCATTGCAGTGATCAC+TGG + chr5.4:44578501-44578520 MS.gene63050:intron 45.0%
CCACAAATGACTCCACAAGT+GGG - chr5.4:44582086-44582105 None:intergenic 45.0%
CCACCTTCCTCCAAGAATAA+AGG + chr5.4:44579819-44579838 MS.gene63050:intron 45.0%
CCATGCACCAAAACTAATGC+AGG - chr5.4:44577299-44577318 None:intergenic 45.0%
CCTTTATTCTTGGAGGAAGG+TGG - chr5.4:44579822-44579841 None:intergenic 45.0%
GAAAAGGCCACAGCCTTAAT+TGG - chr5.4:44579795-44579814 None:intergenic 45.0%
GAATCGTCTCCAATTTGACG+AGG - chr5.4:44578611-44578630 None:intergenic 45.0%
GAGTAAGAGGATAGTGTTCG+AGG - chr5.4:44577019-44577038 None:intergenic 45.0%
GATTGAACCTAGTGACATCG+TGG - chr5.4:44581500-44581519 None:intergenic 45.0%
GGAATGAGAGAAAGAACCTG+AGG - chr5.4:44580345-44580364 None:intergenic 45.0%
TAATTGGGAGTTTGGCAGAG+CGG - chr5.4:44580603-44580622 None:intergenic 45.0%
TAGCTCACCAAAATTGGCAC+CGG - chr5.4:44578143-44578162 None:intergenic 45.0%
TCAACTTGTGAACCCACTTG+TGG + chr5.4:44582071-44582090 MS.gene63050:CDS 45.0%
TCACACGTATATGTCGCAGT+AGG + chr5.4:44580484-44580503 MS.gene63050:intron 45.0%
TCACCCCATGCTATCAAAAC+TGG - chr5.4:44580228-44580247 None:intergenic 45.0%
TGAAGCACGAACACGATACA+GGG + chr5.4:44577389-44577408 MS.gene63050:intron 45.0%
TGACTCCTTCTACAGACACT+GGG - chr5.4:44580916-44580935 None:intergenic 45.0%
TGATGCTTTCCTGAGCCAAT+AGG + chr5.4:44580852-44580871 MS.gene63050:intron 45.0%
TGCTCGGGCAAGTATTTAAG+AGG - chr5.4:44579444-44579463 None:intergenic 45.0%
TGGGAATGAACATCCAGAAG+AGG + chr5.4:44579663-44579682 MS.gene63050:intron 45.0%
TTATTCTTGGAGGAAGGTGG+AGG - chr5.4:44579819-44579838 None:intergenic 45.0%
TTCAGACCAGTTTCCATCCT+TGG - chr5.4:44579597-44579616 None:intergenic 45.0%
TTCATTGCAGTGATCACTGG+AGG + chr5.4:44578504-44578523 MS.gene63050:intron 45.0%
TTGACTCCTTCTACAGACAC+TGG - chr5.4:44580917-44580936 None:intergenic 45.0%
TTGGTACCAGAGCTCAGAAA+GGG - chr5.4:44579578-44579597 None:intergenic 45.0%
TTGTGGAGTCATTTGTGGCA+CGG + chr5.4:44582088-44582107 MS.gene63050:CDS 45.0%
! ACAAGTGGGTTCACAAGTTG+AGG - chr5.4:44582072-44582091 None:intergenic 45.0%
! ATACACGGTGGGATTTTGCT+AGG - chr5.4:44578544-44578563 None:intergenic 45.0%
! CCCATTTCAATTGGTTCCCA+AGG - chr5.4:44580258-44580277 None:intergenic 45.0%
! CTGATTGGTCCATAACGACT+GGG - chr5.4:44581099-44581118 None:intergenic 45.0%
! GACCTTCCAATCCTTGTTGT+TGG + chr5.4:44581036-44581055 MS.gene63050:intron 45.0%
! TACGGATCCGTCTCTGTTTT+TGG + chr5.4:44577785-44577804 MS.gene63050:intron 45.0%
! TCTGATTGGTCCATAACGAC+TGG - chr5.4:44581100-44581119 None:intergenic 45.0%
! TTTGATAGCATGGGGTGACA+AGG + chr5.4:44580230-44580249 MS.gene63050:CDS 45.0%
!! AAGTGACGAGCTTTGAGCTA+AGG + chr5.4:44580706-44580725 MS.gene63050:intron 45.0%
!! ACGATACAGGGTATCGGATA+CGG + chr5.4:44577401-44577420 MS.gene63050:intron 45.0%
!! CAACGGTCCTGCATTAGTTT+TGG + chr5.4:44577289-44577308 MS.gene63050:CDS 45.0%
!! GAAGCACCGATATGCCTAAA+CGG - chr5.4:44577747-44577766 None:intergenic 45.0%
!!! CCTGCATTAGTTTTGGTGCA+TGG + chr5.4:44577296-44577315 MS.gene63050:CDS 45.0%
AAATGTTGGCCATTGCCCTC+AGG + chr5.4:44580326-44580345 MS.gene63050:CDS 50.0%
ACTTCCTCATATAGGGTGGG+AGG - chr5.4:44580138-44580157 None:intergenic 50.0%
AGACACTGGGACTCATTGCA+AGG - chr5.4:44580903-44580922 None:intergenic 50.0%
AGCTCACCAAAATTGGCACC+GGG - chr5.4:44578142-44578161 None:intergenic 50.0%
AGGTGGCCGTTTAGGCATAT+CGG + chr5.4:44577738-44577757 MS.gene63050:intron 50.0%
AGGTTTCCCTTTCTGAGCTC+TGG + chr5.4:44579569-44579588 MS.gene63050:intron 50.0%
ATAGTCCCACTTGGGTCAGT+TGG + chr5.4:44578060-44578079 MS.gene63050:intron 50.0%
ATGGGGTGACAAGGATCCTT+GGG + chr5.4:44580239-44580258 MS.gene63050:CDS 50.0%
ATTGGTCCATAACGACTGGG+TGG - chr5.4:44581096-44581115 None:intergenic 50.0%
CACTAGCTCATCGGTCACTT+TGG - chr5.4:44579999-44580018 None:intergenic 50.0%
CAGAAAGGGAAACCTACGGA+AGG - chr5.4:44579564-44579583 None:intergenic 50.0%
CCCACCCTATATGAGGAAGT+GGG + chr5.4:44580138-44580157 MS.gene63050:intron 50.0%
CCCACTTCCTCATATAGGGT+GGG - chr5.4:44580141-44580160 None:intergenic 50.0%
CCCACTTGTGGAGTCATTTG+TGG + chr5.4:44582083-44582102 MS.gene63050:CDS 50.0%
CGCTATCTAGGAGAGCTTAC+AGG + chr5.4:44577912-44577931 MS.gene63050:intron 50.0%
CTGGTACCAAGGATGGAAAC+TGG + chr5.4:44579588-44579607 MS.gene63050:intron 50.0%
CTTGAGAGTAGCACACTCAG+AGG - chr5.4:44578102-44578121 None:intergenic 50.0%
CTTGGTACCAGAGCTCAGAA+AGG - chr5.4:44579579-44579598 None:intergenic 50.0%
GACCTGTATCACCCTCAAGA+TGG + chr5.4:44581239-44581258 MS.gene63050:intron 50.0%
GACGGGAATATGAGTCCCAT+CGG - chr5.4:44581385-44581404 None:intergenic 50.0%
GAGAAAGAACCTGAGGGCAA+TGG - chr5.4:44580338-44580357 None:intergenic 50.0%
GATGAGCTGCACTAGCTCAT+CGG - chr5.4:44580008-44580027 None:intergenic 50.0%
GCAACGACACTGTTTGGTTG+AGG - chr5.4:44577058-44577077 None:intergenic 50.0%
GCCACAAATGACTCCACAAG+TGG - chr5.4:44582087-44582106 None:intergenic 50.0%
GGAACTGCTACCCCAAGTAA+AGG + chr5.4:44580105-44580124 MS.gene63050:CDS 50.0%
GGCAATGGCCAACATTTGGA+AGG - chr5.4:44580323-44580342 None:intergenic 50.0%
GGTCTCAGGTTTGATTCTCC+CGG + chr5.4:44578121-44578140 MS.gene63050:intron 50.0%
GTACGATAAGGTGGCCGTTT+AGG + chr5.4:44577730-44577749 MS.gene63050:intron 50.0%
GTTTCCTCCCACCCTATATG+AGG + chr5.4:44580131-44580150 MS.gene63050:intron 50.0%
TACAGGTCAGACAAGCCTGT+CGG - chr5.4:44581227-44581246 None:intergenic 50.0%
TCCCACCCTATATGAGGAAG+TGG + chr5.4:44580137-44580156 MS.gene63050:intron 50.0%
TCCCACTTCCTCATATAGGG+TGG - chr5.4:44580142-44580161 None:intergenic 50.0%
TCTGTATGACATGGTAGGGC+TGG - chr5.4:44581454-44581473 None:intergenic 50.0%
TGAGGGCAATGGCCAACATT+TGG - chr5.4:44580327-44580346 None:intergenic 50.0%
TGAGTCCCAGTGTCTGTAGA+AGG + chr5.4:44580908-44580927 MS.gene63050:intron 50.0%
TGCAGCTCATCCTTAGTCCA+GGG + chr5.4:44580017-44580036 MS.gene63050:CDS 50.0%
TGCAGGAGTTGTAGGTCTTC+AGG + chr5.4:44578839-44578858 MS.gene63050:intron 50.0%
TGCATGGTTTCGGAGCTAAC+AGG + chr5.4:44577312-44577331 MS.gene63050:CDS 50.0%
TGGGACTCATTGCAAGGTGA+GGG - chr5.4:44580897-44580916 None:intergenic 50.0%
TTTATGGTCTGCCCTTCCGT+AGG + chr5.4:44579549-44579568 MS.gene63050:intron 50.0%
! CTCTGAGTGTGCTACTCTCA+AGG + chr5.4:44578100-44578119 MS.gene63050:intron 50.0%
! CTTTCTGAGCTCTGGTACCA+AGG + chr5.4:44579577-44579596 MS.gene63050:intron 50.0%
! TGATGGTGTATCGGAGCGTA+TGG + chr5.4:44577706-44577725 MS.gene63050:intron 50.0%
! TGTGCTACTCTCAAGGTCTC+AGG + chr5.4:44578107-44578126 MS.gene63050:intron 50.0%
!! GACGAGCTTTGAGCTAAGGA+TGG + chr5.4:44580710-44580729 MS.gene63050:intron 50.0%
!! GATTCTCCCGGTGCCAATTT+TGG + chr5.4:44578133-44578152 MS.gene63050:intron 50.0%
!! GGCCTAGGAAGCATTGTATC+TGG - chr5.4:44579773-44579792 None:intergenic 50.0%
!! TCAGTTGGTGGTGTTGGCTT+GGG + chr5.4:44578075-44578094 MS.gene63050:intron 50.0%
ACACCACCAACTGACCCAAG+TGG - chr5.4:44578069-44578088 None:intergenic 55.0%
ACTTGGGGTAGCAGTTCCTC+CGG - chr5.4:44580103-44580122 None:intergenic 55.0%
ATGGGAGAGAGTGAGCGTAG+TGG - chr5.4:44576996-44577015 None:intergenic 55.0%
CACCACCAACTGACCCAAGT+GGG - chr5.4:44578068-44578087 None:intergenic 55.0%
CATGGGGTGACAAGGATCCT+TGG + chr5.4:44580238-44580257 MS.gene63050:CDS 55.0%
CCACAGCCTTAATTGGGCCT+AGG - chr5.4:44579788-44579807 None:intergenic 55.0%
CCTAGGCCCAATTAAGGCTG+TGG + chr5.4:44579785-44579804 MS.gene63050:intron 55.0%
CTGGGACTCATTGCAAGGTG+AGG - chr5.4:44580898-44580917 None:intergenic 55.0%
GAGACGTATGCGAGGTGTGT+CGG + chr5.4:44577598-44577617 MS.gene63050:intron 55.0%
GCGTATGGCGTACGATAAGG+TGG + chr5.4:44577721-44577740 MS.gene63050:intron 55.0%
GGAGCGTATGGCGTACGATA+AGG + chr5.4:44577718-44577737 MS.gene63050:intron 55.0%
GGAGGAAGGTGGAGGAGAAA+AGG - chr5.4:44579811-44579830 None:intergenic 55.0%
GTAGCAGTTCCTCCGGAAGA+GGG - chr5.4:44580096-44580115 None:intergenic 55.0%
GTGCAGCTCATCCTTAGTCC+AGG + chr5.4:44580016-44580035 MS.gene63050:CDS 55.0%
TTACTCAGGAGGCCCTCTTC+CGG + chr5.4:44580081-44580100 MS.gene63050:CDS 55.0%
! ATGCAAACACTCTGACGGGC+TGG + chr5.4:44579303-44579322 MS.gene63050:intron 55.0%
! CGGTGGGATTTTGCTAGGTC+TGG - chr5.4:44578539-44578558 None:intergenic 55.0%
! CTGAGCTCTGGTACCAAGGA+TGG + chr5.4:44579581-44579600 MS.gene63050:intron 55.0%
! CTGCTCTAGTGTGTACCGAC+AGG + chr5.4:44581209-44581228 MS.gene63050:intron 55.0%
!! CTTGGGTCAGTTGGTGGTGT+TGG + chr5.4:44578069-44578088 MS.gene63050:intron 55.0%
!! GTCAGTTGGTGGTGTTGGCT+TGG + chr5.4:44578074-44578093 MS.gene63050:intron 55.0%
ACGTATGCGAGGTGTGTCGG+AGG + chr5.4:44577601-44577620 MS.gene63050:intron 60.0%
CAGGTTCCAGCCCTGGACTA+AGG - chr5.4:44580030-44580049 None:intergenic 60.0%
CGTCAGCCACCCAGTCGTTA+TGG + chr5.4:44581087-44581106 MS.gene63050:intron 60.0%
CTTAGTCCAGGGCTGGAACC+TGG + chr5.4:44580028-44580047 MS.gene63050:CDS 60.0%
GCTCATCCTTAGTCCAGGGC+TGG + chr5.4:44580021-44580040 MS.gene63050:CDS 60.0%
GGAGAGAGTGAGCGTAGTGG+TGG - chr5.4:44576993-44577012 None:intergenic 60.0%
GGTAGCAGTTCCTCCGGAAG+AGG - chr5.4:44580097-44580116 None:intergenic 60.0%
GTCCCACTTGGGTCAGTTGG+TGG + chr5.4:44578063-44578082 MS.gene63050:intron 60.0%
!! CACTCTGACGGGCTGGTTTC+TGG + chr5.4:44579310-44579329 MS.gene63050:intron 60.0%
ACAGCACCAGGTTCCAGCCC+TGG - chr5.4:44580037-44580056 None:intergenic 65.0%
CTCAGGAGGCCCTCTTCCGG+AGG + chr5.4:44580084-44580103 MS.gene63050:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 44576977 44582149 44576977 ID=MS.gene63050
chr5.4 mRNA 44576977 44582149 44576977 ID=MS.gene63050.t1;Parent=MS.gene63050
chr5.4 exon 44576977 44577149 44576977 ID=MS.gene63050.t1.exon1;Parent=MS.gene63050.t1
chr5.4 CDS 44576977 44577149 44576977 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44577241 44577333 44577241 ID=MS.gene63050.t1.exon2;Parent=MS.gene63050.t1
chr5.4 CDS 44577241 44577333 44577241 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44578514 44578725 44578514 ID=MS.gene63050.t1.exon3;Parent=MS.gene63050.t1
chr5.4 CDS 44578514 44578725 44578514 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44578844 44578988 44578844 ID=MS.gene63050.t1.exon4;Parent=MS.gene63050.t1
chr5.4 CDS 44578844 44578988 44578844 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44579081 44579153 44579081 ID=MS.gene63050.t1.exon5;Parent=MS.gene63050.t1
chr5.4 CDS 44579081 44579153 44579081 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44579980 44580126 44579980 ID=MS.gene63050.t1.exon6;Parent=MS.gene63050.t1
chr5.4 CDS 44579980 44580126 44579980 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44580222 44580347 44580222 ID=MS.gene63050.t1.exon7;Parent=MS.gene63050.t1
chr5.4 CDS 44580222 44580347 44580222 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
chr5.4 exon 44582060 44582149 44582060 ID=MS.gene63050.t1.exon8;Parent=MS.gene63050.t1
chr5.4 CDS 44582060 44582149 44582060 ID=cds.MS.gene63050.t1;Parent=MS.gene63050.t1
Gene Sequence

>MS.gene63050

ATGACATTTGCTTCCACCACTACGCTCACTCTCTCCCATCCTCGAACACTATCCTCTTACTCCAAAAATATTCGTTCTCCTCAACCAAACAGTGTCGTTGCATTTTCTAGTTTCAGTAATCAAATTGTTTCCAAATTAACCGTTCAAAATGAAGAGCTCGATGTTCAAACCAGGTAACTTTTTAAACTTGTTACTTTCTGAAATCTGAATCAGATAGTATTCTTACGTGGAATTGGACTCTCTTATTTTATTTTGTACTTGTAGCATGTGGAATTGGAAGGGTTACAATATTCGCTATCAATATTCTGGGAACAACGGTCCTGCATTAGTTTTGGTGCATGGTTTCGGAGCTAACAGGTCTGTCTACCTTCTTAATCTCATTTTTCTCCGGTGTTCATTGAATATCGGTCTATGAAGCACGAACACGATACAGGGTATCGGATACGGCAATATTTAGTCATTGAAAAATTATATAGGATACGATACGTTAAAGATAAGTATATTGAAATAGTATCAATGTCATTTCCTCCTTCAATTTGCACAATAAAAAAATTATGAGAAATATTAAAGTTAGAGAATAGAATAGTAATTAAAGAGGGAGAAACTGAACTCAACATTTATGAGACGTATGCGAGGTGTGTCGGAGGCGTGTCGACGACGTATTGTAGTGTGTCAGCGACATATCAAATTTTTTTATTTTATTTATTCTGATACTCCTTCAATACATATTGATGGTGTATCGGAGCGTATGGCGTACGATAAGGTGGCCGTTTAGGCATATCGGTGCTTCATAGAGATCGGTTTCTGATACGGATCCGTCTCTGTTTTTGGAGTATTTGGGCTTCATTGCTCTTAGCATAGAAGTGCTTATATGAAATATTTATAGTAAAAAGTAAAATAAAGTCGAACTATTTTATATAAGCTGTTTAGATATACGCTATCTAGGAGAGCTTACAGGAATAATCTATAAATAACCCATGGACAAGTCATAAGTTGTTTTCAAAAGTTCTCCCAAATAGTTTACAAGTGCTTATGCCTGAGGTTAGCTCAAATAAGTCACTCCAAATAGTCCGAATCAATCAAATAGTCCCACTTGGGTCAGTTGGTGGTGTTGGCTTGGGACCTCTGAGTGTGCTACTCTCAAGGTCTCAGGTTTGATTCTCCCGGTGCCAATTTTGGTGAGCTAATTTAGCTTCTTAAAATAAAAAAATTATATTGAGAATTTATCCGTTCAAAAGTTTATGTAAAAGAACACTTATCTATTTTCCTCCATGAATTATACAGATCTTTACCGGGGAAACCTGTTTCTTTATATATATATGGAATATGCAATAACAACCATACCTTTTTTTAATTCTTGAATTTTTTCATGAGTACTGGTATCTAGAAATTTGATTAAGAAACATGTATCCATGTTCTTTCATTTCAATTAAAAATGCAGGACACATATTATATCACATATTTATTGTAAGGGTCTTATAGCTAGGTCTGTTTGGTTCTGCAGTTATTGAGTGATTGAGAATACACTTCATTGCAGTGATCACTGGAGGAAAAATATTCCAGACCTAGCAAAATCCCACCGTGTATACTCTATTGATCTTATTGGATATGGATATTCAGACAAACCAAATCCTCGTCAAATTGGAGACGATTCCTTTTACACGTTTGATACATGGGCCGCACAATTAAATGAGTTCTGTCTTGATGTCGTTAAGGATGAAGCATTCTTTATATGCAATTCTATTGGAGGTAAATTCTTTTCAAGTGCTTTGATATTTAATTACTGACCAGGTTATTTTAAATTATTCGATTCTCATTCATTGTTACAAGCGAAGAGATACATTATTCCGATATTATTTTTGTGCAGGAGTTGTAGGTCTTCAGGCAGCTATAACAGAACCACAAATCTGCAAGGGAATTCTCCTTCTTAATATATCTTTGCGTATGCTTCATATAAAGAAGCAGCCTTGGTATGCAAGACCTTTCATCAGTTCATTCCAAAGATTGCTTAGGTACAGATGATACAGAAGTTTCATTTTATTGAACAGATTTCATGTTCAAACATTAAGCAGGGGATTTACCATTATCAAGCTTTATGTTATAGGGATACTTCTGTTGGAAAATTCTTCTTTAAAGCTGTTGCAACGAAAGAATCTGTGAAGAACATTTTATGCCAGGTATTCTTCTAGCTTAACACGCAGCTAAACTTAATCTCTTTGAAAGCCTATATTTAAACAATGTTACAGGATGAGACTATTAATGCATTATAATAAAATTAAATGACCTTGCTGATGCTCAAAACTGAACCTACAATAAGCAGAGAAAAATGCAAACACTCTGACGGGCTGGTTTCTGGCTTACCCTCAACAGCATCTAATCACCTACATTCTCTCCTTACTCTATTGATGTCAAGCACTTGGGGAACGCTCCCTTAAAAGCTAGCTATCGAAGAGAAAAAACTAAGCCTCTTAAATACTTGCCCGAGCATCTCATAATACTCGATGAGGGACTTGGACACCCAATAATACTCAATTATCTATGTTATCACCCCAGAACAACGAATAACTCAAACTTTATGGTCTGCCCTTCCGTAGGTTTCCCTTTCTGAGCTCTGGTACCAAGGATGGAAACTGGTCTGAATTGATATATTTACTGAATAATACTTCTGAGTTATTTATCAATTTTCTGGGAATGAACATCCAGAAGAGGAGTTACATTAGAATTGCGAAATACTACAATATATATATATATATATATATATATATATATATATATATATATATATATAAGCAACCAGATACAATGCTTCCTAGGCCCAATTAAGGCTGTGGCCTTTTCTCCTCCACCTTCCTCCAAGAATAAAGGCCTATTTCTAAGTCCTAACAATATCAAACACTTATGTTATAAGCAACCAGCTCCAATTTGTATCATTCTTTATATATTGACAAACAAGGATGATTTTACCTGAAACTATACTAATTGTGAATGAATTACTTTTCTCAGTGCTATCATGACACTTCCAAAGTGACCGATGAGCTAGTGCAGCTCATCCTTAGTCCAGGGCTGGAACCTGGTGCTGTAGATGTCTTTCTTGAGTTTATTTGTTACTCAGGAGGCCCTCTTCCGGAGGAACTGCTACCCCAAGTAAAGGTATGTTTCCTCCCACCCTATATGAGGAAGTGGGAAGTTATAATAAACTTTAATGCAACAAATGCAAATAATATGCATCATTTCTCTTATTTTAGTGTCCAGTTTTGATAGCATGGGGTGACAAGGATCCTTGGGAACCAATTGAAATGGGAAGAAATTACGGAAATTTTGATTCAGTGGAAGACTTCATTGTCCTTCCAAATGTTGGCCATTGCCCTCAGGTTCTTTCTCTCATTCCATTCACTTGCTTTCTTTCTATAATATATGTCTTTGTGTGTGTGAAAGAGTTGATTTAGCATTTTCATGTGTTGATTATTTTCCTTTTTGTGACATCCACTTTTTGTGATGTTACTGTTGTCACACGTATATGTCGCAGTAGGAATTCAGCGTCAACATTTTTTTTTTTGAGGTGATGCTTCCTACATATAAAGTCAAAGTCATCAGAACTTTTCCTCTATAGATGAACTCGTTTTCCGCTCTGCCAAACTCCCAATTAACACAGTGATCCTTATGTCCAACTATGAACATTGCGTTAGGAATGTCGATAGGAATTCAAGTCTATTAGAAAATATTGGATGAAAGTGACGAGCTTTGAGCTAAGGATGGTTCCTTTACATTCTGTTATCTAATTGACTAGTATTTAGTTGGCTTTCTTACTGAATGCACTAACATTTGTCTGGGAATTTAATTGTCTAACTACGGTCTTGACTTTCTTAGCATCAACTTGATGCTTTCCTGAGCCAATAGGTGAATATATAATTGCATTGCCCTCACCTTGCAATGAGTCCCAGTGTCTGTAGAAGGAGTCAAGCATCTTCCAAAAAGGGTTAACATGGTGCTAAAAGGCTCCCACCATGACTATTTCAAAGTGTTCGCAATAGAATTCTACCACAAATATACTAGCTTGACGACCTTCCAATCCTTGTTGTTGGTTAATAAGAAACAATCAATAGTCATTAACGTCAGCCACCCAGTCGTTATGGACCAATCAGATTTGAGCAATAATTACTGATGGTAAATATTACACATTTGACCAAGTACTTAATGATCTCTATCGGTCGTTCTAAAAAGAGTAATTAAAACTGCTCTAGTGTGTACCGACAGGCTTGTCTGACCTGTATCACCCTCAAGATGGTTGATATCTTACATCTATCTTTGGGTCATGTTGGGTTAGTTGCAAACTTGCAGCGCAGAAACATACCTTGCACTATTTGTAAACGTTCCTCTAAAATGTTCCGTGATTAACTTATAAAATCCGATGGGACTCATATTCCCGTCAGAAGTCATTCCTTTCATGCACATCCCTATATTCTAGATACATCTGCCAGCCCTACCATGTCATACAGATAGTGGAGTTCAGCCGAAAATGACCACGATGTCACTAGGTTCAATCTGTCATCTATATACGGAGGACTTATATGCTCTCAGAGTTACATCCATTGTCCTATACTATTATTTTAAGACCAAAAATGACTTGATCGTTTAAGTGTTGCACAGGCACTTACCCTATCTGTCTACTGATTTTTGTTGTGCACAACAACAATTCATCTATTTGTAGAAAAAACTCTGAAGTCATCCTATTTTGACTATGAGAATAATCACATAATTGCCAGAGTGCCTTTTATACCAATCAGATATAAGTGACCGTTCACATTAAAAGTGGTTTTCATTTGGATAAAACTATACATCTTTTTCATTTCTTATATCAGAAAGGTCCATTGATAGTGAAATAAGCTTCAATATTGCTCCATAATGATGTTTTACATAAATATATCCTTTTTCTTTAATGCTTGTTTTGGTATGTTTATTTTCTCTCATTTCTATCTTTATGTTAGAACCTATTGCAACATTAAGTGGTCATATCTAATCAAATGAATAACTCTGTCTTGTTTGCAATAATCTTCTTACTTTGTTAACTGTCCATTTCATGAAGGATGAAGCACCTCAACTTGTGAACCCACTTGTGGAGTCATTTGTGGCACGGCATGCCAAATCTTCATCTCTTACCCCATCAGTTGATTGA

Protein sequence

>MS.gene63050.t1

MTFASTTTLTLSHPRTLSSYSKNIRSPQPNSVVAFSSFSNQIVSKLTVQNEELDVQTSMWNWKGYNIRYQYSGNNGPALVLVHGFGANSDHWRKNIPDLAKSHRVYSIDLIGYGYSDKPNPRQIGDDSFYTFDTWAAQLNEFCLDVVKDEAFFICNSIGGVVGLQAAITEPQICKGILLLNISLRMLHIKKQPWYARPFISSFQRLLRDTSVGKFFFKAVATKESVKNILCQCYHDTSKVTDELVQLILSPGLEPGAVDVFLEFICYSGGPLPEELLPQVKCPVLIAWGDKDPWEPIEMGRNYGNFDSVEDFIVLPNVGHCPQDEAPQLVNPLVESFVARHAKSSSLTPSVD