AlfalfaGEDB | MS.gene76418

M. sativa cultivar XinJiangDaYe / MS.gene76418

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76418.t1	XP_013446399.1	99.4	329	0	1	1	329	48	374	4.90E-186	660.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76418.t1	Q9FFZ1	27.5	324	194	5	36	320	93	414	1.5e-29	131.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76418.t1	A0A072TTE3	99.4	329	0	1	1	329	48	374	3.6e-186	660.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene76418	0.810347	1.21E-50	-1.69E-46
MS.gene049171	MS.gene76418	0.933657	1.34E-95	-1.69E-46
MS.gene049173	MS.gene76418	0.832102	1.14E-55	-1.69E-46
MS.gene049217	MS.gene76418	0.842605	2.33E-58	-1.69E-46
MS.gene049222	MS.gene76418	0.900947	4.39E-78	-1.69E-46
MS.gene049232	MS.gene76418	0.865455	5.83E-65	-1.69E-46
MS.gene049281	MS.gene76418	-0.81087	9.30E-51	-1.69E-46
MS.gene049285	MS.gene76418	0.913667	4.72E-84	-1.69E-46
MS.gene049320	MS.gene76418	0.895746	7.15E-76	-1.69E-46
MS.gene04939	MS.gene76418	0.824859	6.42E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004921	MS.gene76418	PPI
MS.gene012239	MS.gene76418	PPI
MS.gene051828	MS.gene76418	PPI
MS.gene062219	MS.gene76418	PPI
MS.gene07438	MS.gene76418	PPI
MS.gene24845	MS.gene76418	PPI
MS.gene76418	MS.gene90280	PPI
MS.gene76418	MS.gene051793	PPI
MS.gene76418	MS.gene90176	PPI
MS.gene76418	MS.gene07443	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76418.t1	MTR_8g077185	99.392	329	0	1	1	329	48	374	0.0	672
MS.gene76418.t1	MTR_1g076920	36.257	342	178	13	6	320	62	390	4.52e-52	176
MS.gene76418.t1	MTR_5g056200	34.314	306	167	8	39	324	59	350	2.64e-49	168
MS.gene76418.t1	MTR_4g036495	33.216	283	172	8	39	317	404	673	2.57e-39	147
MS.gene76418.t1	MTR_3g034670	28.378	370	204	12	4	326	101	456	1.56e-31	124
MS.gene76418.t1	MTR_5g044540	25.874	286	175	8	49	325	8	265	6.61e-19	85.5
MS.gene76418.t1	MTR_5g044540	25.874	286	175	8	49	325	25	282	7.96e-19	85.5
MS.gene76418.t1	MTR_5g044540	25.874	286	175	8	49	325	24	281	1.23e-18	85.1
MS.gene76418.t1	MTR_5g044540	25.263	285	178	8	49	325	87	344	1.62e-18	85.5
MS.gene76418.t1	MTR_4g083080	26.766	269	162	8	49	309	68	309	1.85e-15	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76418.t1	AT4G36530	74.528	318	76	2	1	318	51	363	0.0	509
MS.gene76418.t1	AT4G36530	74.593	307	77	1	12	318	1	306	4.21e-180	501
MS.gene76418.t1	AT5G19850	34.043	329	176	9	5	318	55	357	1.15e-54	182
MS.gene76418.t1	AT5G38520	35.119	336	190	12	5	321	34	360	3.49e-46	160
MS.gene76418.t1	AT5G38520	34.957	349	185	13	5	321	34	372	1.43e-45	159
MS.gene76418.t1	AT4G25290	34.667	300	175	9	27	321	388	671	3.19e-41	152
MS.gene76418.t1	AT5G13800	29.573	328	182	9	36	320	93	414	3.78e-35	133
MS.gene76418.t1	AT5G13800	29.573	328	182	9	36	320	93	414	3.78e-35	133
MS.gene76418.t1	AT5G13800	29.573	328	182	9	36	320	116	437	6.22e-35	133
MS.gene76418.t1	AT5G13800	29.430	316	174	9	36	308	93	402	5.29e-33	126

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Find 90 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCACTATGTTGTGCA+AGG	0.574133	8.1:+30529446	MS.gene76418:CDS
AAACCATGAATAAGAACAAG+AGG	0.582877	8.1:-30529479	None:intergenic
AAAGCCGAGTTCACAAGTTC+CGG	0.451235	8.1:-30532753	None:intergenic
AACTAACCTTGAGATTGAGA+TGG	0.595866	8.1:-30528807	None:intergenic
AAGACTGATTCAATCCGAGC+GGG	0.577428	8.1:-30531383	None:intergenic
AAGCAGAAGGGTACAATTAT+TGG	0.274374	8.1:+30529408	MS.gene76418:CDS
AAGGGTACAATTATTGGAAG+TGG	0.485898	8.1:+30529414	MS.gene76418:CDS
AAGTTCCGGTATCTCGTCGT+GGG	0.513634	8.1:-30532739	None:intergenic
AATAAACTTCTCCGGCATTG+GGG	0.651870	8.1:-30532098	None:intergenic
ACAACTCCAGTGACAGACTC+AGG	0.567497	8.1:-30531212	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCACTATGTTGTGCA+AGG	+	chr8.1:30529446-30529465	MS.gene76418:CDS	30.0%
AAACCATGAATAAGAACAAG+AGG	-	chr8.1:30529482-30529501	None:intergenic	30.0%
AAATGAATATACGTCTCCAT+TGG	+	chr8.1:30532265-30532284	MS.gene76418:intron	30.0%
AAATTAAGGAAAACTGTGCA+TGG	-	chr8.1:30530867-30530886	None:intergenic	30.0%
AATAAAAAAGTCTGCAACCA+CGG	-	chr8.1:30529300-30529319	None:intergenic	30.0%
ACATACTAAGATTTATGCGA+AGG	-	chr8.1:30530257-30530276	None:intergenic	30.0%
ACCATATGTTCAATCTATGT+GGG	+	chr8.1:30529045-30529064	MS.gene76418:intron	30.0%
AGAATTAGCTAAGAAACACA+AGG	+	chr8.1:30530640-30530659	MS.gene76418:CDS	30.0%
AGTAGCTTAGTTTATCTCTT+AGG	+	chr8.1:30531613-30531632	MS.gene76418:intron	30.0%
AGTATCTTATATTGTCTCCT+AGG	+	chr8.1:30531654-30531673	MS.gene76418:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	30528756	30532827	30528756	ID=MS.gene76418
chr8.1	mRNA	30528756	30532827	30528756	ID=MS.gene76418.t1;Parent=MS.gene76418
chr8.1	exon	30528756	30528822	30528756	ID=MS.gene76418.t1.exon1;Parent=MS.gene76418.t1
chr8.1	CDS	30528756	30528822	30528756	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1
chr8.1	exon	30529381	30529525	30529381	ID=MS.gene76418.t1.exon2;Parent=MS.gene76418.t1
chr8.1	CDS	30529381	30529525	30529381	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1
chr8.1	exon	30530628	30530798	30530628	ID=MS.gene76418.t1.exon3;Parent=MS.gene76418.t1
chr8.1	CDS	30530628	30530798	30530628	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1
chr8.1	exon	30531172	30531412	30531172	ID=MS.gene76418.t1.exon4;Parent=MS.gene76418.t1
chr8.1	CDS	30531172	30531412	30531172	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1
chr8.1	exon	30532033	30532124	30532033	ID=MS.gene76418.t1.exon5;Parent=MS.gene76418.t1
chr8.1	CDS	30532033	30532124	30532033	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1
chr8.1	exon	30532554	30532827	30532554	ID=MS.gene76418.t1.exon6;Parent=MS.gene76418.t1
chr8.1	CDS	30532554	30532827	30532554	ID=cds.MS.gene76418.t1;Parent=MS.gene76418.t1

Gene Sequence

>MS.gene76418

ATGGCAACTGGAGTTTCAGTTATGGCTTCCTCTCTTACTTCACAAGCTCAACCATCTCAATCTCAAGGTTAGTTATTTATTCAATGCTGCTTCTGCCTCACTTTCACTTATGCCATTTATGCCATTTCTGACAAGTATTATTATTTTCTATTATTTTCTTCTTCAAGATTTGAATCGCGGATCTCCATCTCAATCGCGCTTTGTATTAGGTTTTTACATTAGGTCTAACTCATCCTTACGGAACTAGTTTGTAAGATGAGGAGTGTCACTCTTTATAAAGTTTAGTCAGACCATATGTTCAATCTATGTGGGACTTGGTTTTTCCAATACGTTGCGGTCAAGACATCAAAAACCGAGGGAGGAACTTTTTCCACCCGAAGTCACTTTGGATGTACACATCTGAAAATAAAAAACAATTTTTGTGTTGTCCAGATGTGTGTTTTCGGACAAATTAAGAGTTTTTGTATTGTCTGGATGTATACATCCCTGACTCATTTGCGATTTTTAAGAATTGTACCCAAAATTGTTATTGCGGCCCAGACCGTGGTTGCAGACTTTTTTATTTATTAAAAACATGGGTTATTTTATTTTATATGCTTATATTTATGGCTTTTTCCTTTTTAAGAGAAGGAACTTGAAAGATTACCATACAAAGCAGAAGGGTACAATTATTGGAAGTGGAAGGATCATAAAATTCACTATGTTGTGCAAGGAGAAGGCCCTCCTCTTGTTCTTATTCATGGTTTTGGTGCATCTGCATTCCACTGGAGGTTTGTTTCTTTCATTGAAATCTTACGCCTTTTTTAGTTTTATTGCTTAGTTAATGCTTAATCCGAAAGGGAAAAAATTAAGAAAACCCTTCAAGAGAATCAGCTAAAAGATTTGATGCCCTTTTATATGTGCTGTTTATATTTTTAGTCTAACTTCCAATTCTGTGCGTATTCAATTCTGTTCCTTCTTTCGATATATGCATTTAGAAATACAGTAAACAGCATATTTTCATTTGCAATATGCATAAATAAGTGATTATAAAACAAGATCCTAAGTAACATTGAACAGCAATCAATCTGTGCAGGCATAACAAAATTAATGTCAACACTTGGAAATACAGTAAACATGTTCATATCTTTATAAATGCACGCATCAATGTATATATATGAGATTCTGATGTCTATACTCCTAAAGGGAAGAGAAGAGGAACATTGAATTGATATAATTGATTTAACTAAGCTACAAAAATGCGAGAGCTCCACTTTCTTGATTAAATGTTATGCCTGCATGAAATATAACATATCGCCCAGTCAACTCAATTGCCAAATAACAACATTCAACAACTTTAGTACAAGCATATATATAATGAACTGCTATACTAGTACTAGACTATTAGTTGTTAACAATTAAAGCATTTCGCTTATTATCACTCCACAATTGAGTAAACTTGAAGCACATACATTTACTATTTTTTTCACTTCCAGCTGATAAATATTATAACTTAGAACCTTCGCATAAATCTTAGTATGTACTTCTCACTTTTTTCGTTGATGGCAAAGGGAATATCCTGATATAGCATGTAATGTGCTAACAAATGCTGTTTAATACTGTAAAAAATGTGATTGTTGCTATAGCTCTTTCTTCTAAGACAAAAAGGTTGAGTGTTCTGTCTTTGCAGTGTATGCAGTGGCCGCAAATGATTATAAGTGAAATGCTATAAATGTTAACAACTATATATTAATCAAAAAGCTAAATTCCTAATGTGATTGTTGCTATAGCTCGTTCAAATGTTTATTAAAGTGGCTGTAAATGTCTGTCCGAAAAGTTAATTTTTTGTTATGTAGTCATATATCTTTATACACTTCATTTACATCTCTCCAGATACAATATTCCAGAATTAGCTAAGAAACACAAGGTTTATGCCTTAGACTTGCTTGGATTTGGGTGGAGTGACAAAGCACTCGTCGACTATGATGCCATGGTGTGGAGGGATCAAGTCGTGGACTTCATGAAGGAAATTGTTAAAGAACCAGCAGTTTTGGTTGGAAATAGGTAATTACCGTAGTACCTAGATTTACATCGAATTATTAGGCTGAAATAGCATATTCTTCTTTTTTCCATGCACAGTTTTCCTTAATTTTGGAAATTTAGTCTGTCGTGGTGGCAAACACAATGGTGTCCATCGCTGGTCACGACAAATAGCTGTTTGTTCAAATTTCACTACACTACGGTGCTATAGTGCCACTATCTGTTAACGCTTCGTTCTAAATTGCATATCGCAAAACAATAGTGGTTTGTTCAAATTAGACTGCTGCAATGTTTAGCTTTTCATAAATTACAACATCTGCTATTTCGATTCTTTTCCTATTTTTTTTTTTAATAAGTTAAAACTATGGTGTTAATCTCAATCATGATGACTTTTCAGCCTTGGAGGATTTACTGCTTTGATTGCAGCTGCTGGGTTGCCTGAGTCTGTCACTGGAGTTGTTCTACTGAATTCTGCAGGACAATTTGGTGATGGAAATAAGGAACAGAAAACTTCAGAGGAAACATCTCTACAAAAGTTTTTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTATATTCTGGCAGTCGAAGCAACCCGCTCGGATTGAATCAGTCTTAAAAAGTGTAGGTTACATAATATCTTCAACTTGGATTTCTTTAAATGCTTGATAGGTATTAAAGTTCAAACTTTGACAACTATATATTAATGAATAAACTTTCACCGAAGAGGCTCATCAAGGCATATTTGTGTCAACAGAATGTTAGGAGTTAGGACGTTTTTATATTATTGTTAGAATATGAGAAAATATCTGACATCATATTAGAGTAGCTTAGTTTATCTCTTAGGATTAGTTTCTAACCGTAGAGTATCTTATATTGTCTCCTAGGATTAATCTCCATGTTACTTGGTTATTATTGTGATTTGTTTCATGATTTTCGTATTTATTTTGGATTATAAGTCTATGTGTCCTTCTAAATAGGGATTAGTGGTTAGTATTTTGTATTAAGCTATTATCAACAGTTTCAACTTCTTACTATTCCTCTTATCCTTTTATCTAAAATCCATAACTTCGACAATTAAGAATCATATTTACGAAAGCTTGTAGCTTTAGTGGGACTGTTTATTTCCTTTCAGGGACTTAGTTCTGCTTGTTTTTTTCTTACTAGGTGTTTCCAATCAAACACAATTCAATTTACTTAAATGGTACTGTATATAAGTTTGATTGCGTAGCTTGTCAATGCAGGTGTATAAAAACTCTTCCAATGTGGATGACTATCTTGTGGAATCCATAACACGGCCAGCTCAAGACCCCAATGCCGGAGAAGTTTATTACAGGTGCATGACCGTTTCCGTCCTAGTCGGTCTTTGTCTATGTTGTCGGATTGCCTGTATAGTGTGGCATGACAGATTCAGTGCCTGCTGTCATAGCTACAGTTCCAATTATGTCCGTCATACTCACAGGCCACAACATCATTAAATGAATATACGTCTCCATTGGAAATAAATCTATAACAAGGCTGCAATTTATTTTCATCAATCATCTACCGTACTAGTCAACTATATATTTGAATCGTGTTAACCATCTAAATTGTTGTCGAAATTTGATTTCAAAACTTCATTTTGCTTTTGATATTTATTGGAAAGAAACATACTAGACTTAAGCAATGTAGATAAGCTGAGGAAATGCTTGTGTTCTAAACAATTCTGTTGGTATATGTTTCTCCTTTTGTTTTTAACTACTACCTGACATATTGTTCTCTGCAGGTTAATGACACGCTTCATGATGAATCAAAGCAAGTACACTCTTGATTCTGTGTTAGGCGAACTCTCTTGCCCGTTGCTTCTGCTATGGGGTGACCTTGATCCATGGGTTGGTCCAGCGAAAGCTAACAAAATCAAAGAGTTTTATCCAAAAACAACTCTTGTTAACTTGCAAGCCGGGCATTGCCCCCACGACGAGATACCGGAACTTGTGAACTCGGCTTTATTGGATTGGCTCGCCACCCTTACTCCTAAAGTCTCTCTCCAAACAGTTTGA

Protein sequence

>MS.gene76418.t1

MATGVSVMASSLTSQAQPSQSQEKELERLPYKAEGYNYWKWKDHKIHYVVQGEGPPLVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALVDYDAMVWRDQVVDFMKEIVKEPAVLVGNSLGGFTALIAAAGLPESVTGVVLLNSAGQFGDGNKEQKTSEETSLQKFFLKPLKEVFQRVVLGFIFWQSKQPARIESVLKSVYKNSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSKYTLDSVLGELSCPLLLLWGDLDPWVGPAKANKIKEFYPKTTLVNLQAGHCPHDEIPELVNSALLDWLATLTPKVSLQTV