AlfalfaGEDB | MS.gene87466

M. sativa cultivar XinJiangDaYe / MS.gene87466

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87466.t1	XP_013446399.1	99.7	327	1	0	1	327	48	374	5.80E-187	663.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87466.t1	Q9FFZ1	27.5	324	194	5	34	318	93	414	1.5e-29	131.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87466.t1	A0A072TTE3	99.7	327	1	0	1	327	48	374	4.2e-187	663.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene87466	0.847061	1.47E-59	-1.69E-46
MS.gene049171	MS.gene87466	0.91504	9.44E-85	-1.69E-46
MS.gene049173	MS.gene87466	0.824811	6.59E-54	-1.69E-46
MS.gene049217	MS.gene87466	0.832467	9.30E-56	-1.69E-46
MS.gene049222	MS.gene87466	0.880462	5.38E-70	-1.69E-46
MS.gene049232	MS.gene87466	0.814035	1.89E-51	-1.69E-46
MS.gene049257	MS.gene87466	0.826072	3.32E-54	-1.69E-46
MS.gene049285	MS.gene87466	0.878611	2.44E-69	-1.69E-46
MS.gene049320	MS.gene87466	0.843437	1.40E-58	-1.69E-46
MS.gene049427	MS.gene87466	0.813821	2.11E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene012239	MS.gene87466	PPI
MS.gene051828	MS.gene87466	PPI
MS.gene062219	MS.gene87466	PPI
MS.gene24845	MS.gene87466	PPI
MS.gene87466	MS.gene90280	PPI
MS.gene87466	MS.gene004921	PPI
MS.gene87466	MS.gene051793	PPI
MS.gene87466	MS.gene07438	PPI
MS.gene87466	MS.gene07443	PPI
MS.gene87466	MS.gene90176	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87466.t1	MTR_8g077185	99.694	327	1	0	1	327	48	374	0.0	674
MS.gene87466.t1	MTR_1g076920	35.988	339	179	12	5	318	65	390	3.68e-52	177
MS.gene87466.t1	MTR_5g056200	34.314	306	167	8	37	322	59	350	1.51e-49	169
MS.gene87466.t1	MTR_4g036495	33.216	283	172	8	37	315	404	673	1.34e-39	148
MS.gene87466.t1	MTR_3g034670	28.804	368	203	12	4	324	101	456	7.44e-32	124
MS.gene87466.t1	MTR_5g044540	25.874	286	175	8	47	323	8	265	4.78e-19	85.9
MS.gene87466.t1	MTR_5g044540	25.874	286	175	8	47	323	24	281	6.65e-19	85.9
MS.gene87466.t1	MTR_5g044540	25.874	286	175	8	47	323	25	282	6.68e-19	85.9
MS.gene87466.t1	MTR_5g044540	25.874	286	175	8	47	323	87	344	1.23e-18	85.9
MS.gene87466.t1	MTR_4g083080	26.766	269	162	8	47	307	68	309	1.27e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87466.t1	AT4G36530	74.684	316	77	1	1	316	51	363	0.0	512
MS.gene87466.t1	AT4G36530	75.658	304	74	0	13	316	3	306	0.0	504
MS.gene87466.t1	AT5G19850	34.557	327	175	10	5	316	55	357	1.06e-54	182
MS.gene87466.t1	AT5G38520	35.714	308	171	11	31	319	61	360	6.63e-46	159
MS.gene87466.t1	AT5G38520	34.688	320	170	11	31	319	61	372	2.46e-45	158
MS.gene87466.t1	AT4G25290	34.667	300	175	9	25	319	388	671	2.06e-41	153
MS.gene87466.t1	AT5G13800	29.573	328	182	9	34	318	93	414	3.19e-35	134
MS.gene87466.t1	AT5G13800	29.573	328	182	9	34	318	93	414	3.19e-35	134
MS.gene87466.t1	AT5G13800	29.573	328	182	9	34	318	116	437	3.45e-35	134
MS.gene87466.t1	AT5G13800	29.430	316	174	9	34	306	93	402	3.35e-33	127

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Find 88 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCACTATGTTGTGCA+AGG	0.574133	8.3:+26916474	MS.gene87466:CDS
AAACCATGAATAAGAACAAG+AGG	0.582877	8.3:-26916507	None:intergenic
AAAGCCGAGTTCACAAGCTC+AGG	0.542509	8.3:-26919626	None:intergenic
AAGACTGATTCAATCCGAGC+GGG	0.577428	8.3:-26918355	None:intergenic
AAGCAGAAGGGTACAATTAT+TGG	0.274374	8.3:+26916436	MS.gene87466:CDS
AAGGGTACAATTATTGGAAG+TGG	0.485898	8.3:+26916442	MS.gene87466:CDS
AATAAACTTCTCCGGCATTG+GGG	0.651870	8.3:-26918931	None:intergenic
ACAACCCCAGTGACAGACTC+AGG	0.566244	8.3:-26918184	None:intergenic
ACAATTTGGCGATGGAAATA+AGG	0.316222	8.3:+26918225	MS.gene87466:CDS
ACTATGATGCCATGGTGTGG+AGG	0.627349	8.3:+26917688	MS.gene87466:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCACTATGTTGTGCA+AGG	+	chr8.3:26916474-26916493	MS.gene87466:CDS	30.0%
AAACCATGAATAAGAACAAG+AGG	-	chr8.3:26916510-26916529	None:intergenic	30.0%
AAACTGTGAAACTACAGAAT+AGG	+	chr8.3:26918445-26918464	MS.gene87466:intron	30.0%
AAATTAAGGAAAACTGTGCA+TGG	-	chr8.3:26917841-26917860	None:intergenic	30.0%
AACACATTACATGCTATATC+AGG	-	chr8.3:26917333-26917352	None:intergenic	30.0%
AATAAAAAAGTCTGCAACCA+CGG	-	chr8.3:26916328-26916347	None:intergenic	30.0%
AGAATTAGCTAAGAAACACA+AGG	+	chr8.3:26917614-26917633	MS.gene87466:CDS	30.0%
ATATAGTTGATTATGTACGG+TGG	-	chr8.3:26919164-26919183	None:intergenic	30.0%
ATCTTGTGGAATCTATAACA+AGG	+	chr8.3:26918897-26918916	MS.gene87466:CDS	30.0%
CGATATGTTATATTTCATGC+AGG	-	chr8.3:26917046-26917065	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	26915830	26919700	26915830	ID=MS.gene87466
chr8.3	mRNA	26915830	26919700	26915830	ID=MS.gene87466.t1;Parent=MS.gene87466
chr8.3	exon	26915830	26915890	26915830	ID=MS.gene87466.t1.exon1;Parent=MS.gene87466.t1
chr8.3	CDS	26915830	26915890	26915830	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1
chr8.3	exon	26916409	26916553	26916409	ID=MS.gene87466.t1.exon2;Parent=MS.gene87466.t1
chr8.3	CDS	26916409	26916553	26916409	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1
chr8.3	exon	26917602	26917772	26917602	ID=MS.gene87466.t1.exon3;Parent=MS.gene87466.t1
chr8.3	CDS	26917602	26917772	26917602	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1
chr8.3	exon	26918144	26918384	26918144	ID=MS.gene87466.t1.exon4;Parent=MS.gene87466.t1
chr8.3	CDS	26918144	26918384	26918144	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1
chr8.3	exon	26918866	26918957	26918866	ID=MS.gene87466.t1.exon5;Parent=MS.gene87466.t1
chr8.3	CDS	26918866	26918957	26918866	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1
chr8.3	exon	26919427	26919700	26919427	ID=MS.gene87466.t1.exon6;Parent=MS.gene87466.t1
chr8.3	CDS	26919427	26919700	26919427	ID=cds.MS.gene87466.t1;Parent=MS.gene87466.t1

Gene Sequence

>MS.gene87466

ATGGCAACTGGAGTTTCAGTTATGGCTTCCTCTCTTACTTCACAAGCTCAACCATCTCAAGGTTAGTTATTTATTCAATGCTGCTTCTGCCTCACTTTCACTTATGCCATTTCTGACAAGTATTATTATTTTCAAGATTTGAATCGCGGATCTCAATCGCAATCGCTTGTCTAACTCATCCTTACGGAACTAGTTTGTAAGATGAGGAGTGTCACTCTTTATAAAGTTTAGTCAGACCTTATGTAGTTATGTTCAATCTATGTGGGACTTGGCTTTTCCAATACGTTGCGGTCAAGACATCAAAAACCGAGGGAGGAACTTTTTCCACCCGAAGTCACTTTGGATGTACATATCTGAAAATAAAAAACAGTTTTTGTGTTGTCCAGATGTGTGTTTTCGGACAAATTAAGAGTTTTTGTATTGTCTGGATGTATACATCCCTGACTCATTTGTGATTTTTAAGAAATGTACCCAAAATTGTTCTTGCGGCCCAGACCGTGGTTGCAGACTTTTTTATTTATTAAAAACATGGGCTATTTTATTTTATATGCTTATATTTATGGCTTTTTCCTTTTTAAGAGAAGGAACTTGAAAGATTACCATACAAAGCAGAAGGGTACAATTATTGGAAGTGGAAGGATCATAAAATTCACTATGTTGTGCAAGGAGAAGGCCCTCCTCTTGTTCTTATTCATGGTTTTGGTGCATCTGCATTCCACTGGAGGTTTGTTTCTTTCATTGAAATCTTACGCCTTTTTTAGTTTTATTGCTTAGTTAATGCTCAATCCGAAAGGGAAAAAATTAAGAAAACTCTTGAAGAGAATCAGCTAAAAGATTTGAGTGTGCCCTTTTATATGTGCTGTTTATATTTTTAGTCTAACTTCCAATTCTGTGCGTATTCAATTCTGTTCCTTCTTTCGATATATGCATTTAGAAATACAGTAAACAGCATATTTTCATTTGCAATATGCATAAAACAAGATCCTAAGTAACATTGAACAGCAATCAATCTGTATAGGCATAACAAAATTAATGTCAACACTTAGAAATACAGTAAACATGTCATATCTTTATAAATGCACGCATCAATGTATATATGAGATTCTGATGTCTATACTCCTAAAGGGAAGAGAAGAGGAACATTGAAATGATATAATTGATTTAACTAAGCTACAAAAATGCGAGAGCTCCACTTTCTTGATCAAATGTTATGCCTGCATGAAATATAACATATCGCCCAGTCAACTCAATTGCCAAATAACAACATTCAAAAACTTTAGTACAAGCATATATATAATGAACTGCTATACTAGTACTAGACTATTAGTTGTTAACATTTAAAGCATTTCGCTTATTATCACTCCACAATTTAGTACACTTGAAGCACATACAATTACTATTTTTTACTTCCAGCTGATAAATATTATTAACTCAGAACCTTCGCATAAATCTTAATATGTACTTCTCACTTTTTTCATTGATGACAAAGGGAATATCCTGCCTGATATAGCATGTAATGTGTTGACAAATATGCTGTTAAATACTGTAAGTAAATGTGATTGTTGCTATAGCTCTTTCTTGTAACAAATGATGATAACTGAAATGCTATAAATGTTAACAACTATATATTAATCAAAAAATTAAATTCCTAATGTGATTGTGGCTATAGCTCTTTTAAATGTTTACTAAAGTGGCTGTAATTGTCTGTCCGAAAAGTTAATTTTTTGTTATGTAGTCATATATCTTTATACACTTCATTTACATCTCTCCAGATACAATATTCCAGAATTAGCTAAGAAACACAAGGTTTATGCCTTAGACTTGCTAGGATTTGGGTGGAGTGACAAAGCACTCGTCGACTATGATGCCATGGTGTGGAGGGATCAAGTCGTGGACTTCATGAAGGAAATTGTTAAAGAACCAGCAGTTTTGGTTGGAAATAGGTAATTACTATAGTACCTAGATTTACATCGAATTATTAGGCTGAAATAGCATATTCTTCTTTTTTCCATGCACAGTTTTCCTTAATTTTGGAAATTTAGTCTGTCGTGGTGGCAAACACAATGGTGTCCATCGCTGGTCACGACAAATAGCTGTTTGTTCAAATTTCGCTACACTACGGTGCTATAGTGCCGCTATCTGTTAACACTTCGTTCTAAATTGCATATCGCAGAACAATAGTGGTTTGTTCAAATTAGACTGCTGCAATGTTTAGCTTTTCATAAATTACAATATCTGCTATATCGATTCTTTTCCTATTTTTTTCGAAAAAGTTAAAACTATGGTGTTAATCTCAATCATGATGACTTTTCAGCCTTGGAGGATTTACTGCTTTGATTGCGGCAGCTGGGTTGCCTGAGTCTGTCACTGGGGTTGTTCTACTGAATTCTGCAGGACAATTTGGCGATGGAAATAAGGAACAGAAAACTTCAGAGGAAACATCTCTACAAAAGTTTTTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTATATTCTGGCAGTCGAAGCAACCCGCTCGGATTGAATCAGTCTTAAAAAGTGTAGGTTACATGATATCTTCAACTTGGATTTCTTTAAATGTTTAATAGGTATTAAAGTTCAAACTGTGAAACTACAGAATAGGCTCATCAAAGCATATGTGTGTCACCAGAATGTTATAGTATCTTATGTGTGAAACTACAAAATGAGAAAATATCTTTGATATTGTACTATAGTATCTTAGTTTATCTCTTAGTATTAGTTTCTAACCATAGAATATCTTAAGATTATCTCCTAGGATCAAGCTATTATCAACAATTTTCAACTTCTTACTCTTCCTCTCATCCTTTTATCTAAAATCCATAACTTCAACAATTTAGAATCATATTTACAGAAGCTTGTAGCTTTAGTGGGACTATTTACTTCCCTTCAGGGACTTTCTTCTGCTAGTTTTTTTTCTTACTAGGTGTTTCCAATCAAACACAATTCAATTTACTTAAATGGCACTGCATATAAGTTTGATTGCGTAGCTTGTCAATGCAGGTGTATAAAAACTCTTCCAATGTGGATGACTATCTTGTGGAATCTATAACAAGGCCAGCTCAAGACCCCAATGCCGGAGAAGTTTATTACAGGTGCATGACCGTTTCCGTCCTAGTCAGTCTTTGTCTGTGTTGTCGGATTGCCTGTATAGTGTGGCATGACGGATTTAGTATCTGATGTCATGGGATACTAAGCCAACTATGTCCGTCATAGGCCACAACGTCATTATATGAATATACATCTCCATTGGAAATAAATCTATAACAATAAGGCTGTAATTTACATTCATTAACATCCACCGTACATAATCAACTATATATTTGAATCGTGTTAACCATCTAAATTGTTGTCGAAATTTGATTTCAAAATATCATTTCTCTTTTGGTATATATTGGAAAGAAACATACTAGGATTTAGCAATGTAGATAAGCTTTGTGTTCTAAACAAATAAATCAACCTTTATTCTGTCCTCACTAACTTGGAGTCTTGATTATCAGTTTCCTGTCTTAATTATTTTATTACTTTGTTTTTAACTACTACTTGACATATTATTTTCTGCAGGTTAATGACACGCTTCATGATGAATCAAAGCAAATACACTCTAGATTCTGTGTTAAGCGAACTTTCTTGCCCGTTGCTTCTGCTGTGGGGTGACCTTGATCCATGGGTTGGTCCAGCGAAAGCTAATAAAATCAAAGAGTTTTATCCAAAAACAACTCTTGTTAACTTGCAAGCCGGGCATTGCCCACACGACGAGATACCTGAGCTTGTGAACTCGGCTTTATTGGATTGGCTCGCCACTCTTACTCCTAAAGTCTCTCTCCAAACAGTTTGA

Protein sequence

>MS.gene87466.t1

MATGVSVMASSLTSQAQPSQEKELERLPYKAEGYNYWKWKDHKIHYVVQGEGPPLVLIHGFGASAFHWRYNIPELAKKHKVYALDLLGFGWSDKALVDYDAMVWRDQVVDFMKEIVKEPAVLVGNSLGGFTALIAAAGLPESVTGVVLLNSAGQFGDGNKEQKTSEETSLQKFFLKPLKEVFQRVVLGFIFWQSKQPARIESVLKSVYKNSSNVDDYLVESITRPAQDPNAGEVYYRLMTRFMMNQSKYTLDSVLSELSCPLLLLWGDLDPWVGPAKANKIKEFYPKTTLVNLQAGHCPHDEIPELVNSALLDWLATLTPKVSLQTV