Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00528.t1 | KEH40000.1 | 94.9 | 818 | 35 | 2 | 1 | 811 | 70 | 887 | 0.00E+00 | 1174.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00528.t1 | B6EUA9 | 50.4 | 819 | 352 | 9 | 3 | 811 | 30 | 804 | 2.5e-170 | 600.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00528.t1 | A0A072VPD9 | 94.9 | 818 | 35 | 2 | 1 | 811 | 70 | 887 | 0.0e+00 | 1174.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene00528 | MS.gene83541 | PPI |
MS.gene00528 | MS.gene74436 | PPI |
MS.gene00528 | MS.gene47154 | PPI |
MS.gene00528 | MS.gene55513 | PPI |
MS.gene00528 | MS.gene063673 | PPI |
MS.gene00528 | MS.gene074082 | PPI |
MS.gene00528 | MS.gene67503 | PPI |
MS.gene00528 | MS.gene64820 | PPI |
MS.gene00528 | MS.gene67685 | PPI |
MS.gene00528 | MS.gene86409 | PPI |
MS.gene00528 | MS.gene067412 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00528.t1 | MTR_1g017520 | 97.436 | 975 | 18 | 2 | 1 | 968 | 70 | 1044 | 0.0 | 1956 |
MS.gene00528.t1 | MTR_1g106025 | 52.454 | 978 | 401 | 25 | 17 | 968 | 64 | 1003 | 0.0 | 775 |
MS.gene00528.t1 | MTR_4g074440 | 24.165 | 778 | 429 | 27 | 44 | 726 | 182 | 893 | 1.01e-34 | 144 |
MS.gene00528.t1 | MTR_4g074440 | 24.590 | 549 | 291 | 21 | 44 | 527 | 182 | 672 | 1.49e-18 | 91.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00528.t1 | AT1G44910 | 56.602 | 977 | 363 | 20 | 3 | 966 | 30 | 958 | 0.0 | 883 |
MS.gene00528.t1 | AT1G44910 | 56.243 | 937 | 353 | 18 | 3 | 926 | 30 | 922 | 0.0 | 836 |
MS.gene00528.t1 | AT3G19670 | 42.611 | 988 | 497 | 25 | 1 | 965 | 50 | 990 | 0.0 | 637 |
MS.gene00528.t1 | AT3G19670 | 42.611 | 988 | 497 | 25 | 1 | 965 | 50 | 990 | 0.0 | 637 |
MS.gene00528.t1 | AT3G19670 | 42.611 | 988 | 497 | 25 | 1 | 965 | 50 | 990 | 0.0 | 637 |
MS.gene00528.t1 | AT3G19670 | 42.611 | 988 | 497 | 25 | 1 | 965 | 31 | 971 | 0.0 | 636 |
MS.gene00528.t1 | AT3G19840 | 25.212 | 353 | 224 | 10 | 410 | 732 | 454 | 796 | 2.30e-18 | 91.3 |
MS.gene00528.t1 | AT3G19840 | 27.426 | 237 | 131 | 10 | 39 | 237 | 97 | 330 | 2.32e-11 | 68.6 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGCATGGCTTGCCTGTTTC+AGG | 0.129013 | 1.2:-5346154 | MS.gene00528:CDS |
GATAATCAACGACCAGTTTC+TGG | 0.168664 | 1.2:-5342214 | MS.gene00528:CDS |
AGCAGAATATAGGAAATTTC+TGG | 0.198110 | 1.2:-5338221 | MS.gene00528:CDS |
GGCCTGTTTGTTTGAATATA+TGG | 0.213492 | 1.2:+5346232 | None:intergenic |
AAATGCATTTAAAGCGCTTT+TGG | 0.225366 | 1.2:-5341247 | MS.gene00528:CDS |
CCATATACCTTGAGCTCTTC+TGG | 0.235089 | 1.2:+5342499 | None:intergenic |
ACATCCTCAAATAAATCTTT+TGG | 0.289484 | 1.2:+5335901 | None:intergenic |
GGGACCACGGGGACGGTTCC+AGG | 0.299819 | 1.2:-5332920 | MS.gene00528:CDS |
TTTGAGGCGGATGCTGGTAT+TGG | 0.308848 | 1.2:+5345975 | None:intergenic |
TTGAGGCGGATGCTGGTATT+GGG | 0.320664 | 1.2:+5345976 | None:intergenic |
TTTCAGTTCACACCATCTTA+TGG | 0.321948 | 1.2:-5346010 | MS.gene00528:intron |
TTATCATCCATTCAGTATTT+GGG | 0.338884 | 1.2:-5340919 | MS.gene00528:intron |
TACCAAAGTTTCACCATCAT+TGG | 0.343297 | 1.2:+5341408 | None:intergenic |
CGTTCAGTTGGCCCGTGAGC+AGG | 0.344750 | 1.2:-5342407 | MS.gene00528:intron |
TTCTGATTGGACGTGGGAAC+AGG | 0.389042 | 1.2:-5341208 | MS.gene00528:intron |
CTGTGAATGTTCATTCTGAT+TGG | 0.390623 | 1.2:-5341221 | MS.gene00528:CDS |
CTCATTCCATCCACTTCTCC+TGG | 0.393371 | 1.2:+5332902 | None:intergenic |
TGAGGAGGTGCTCCTGAAAC+AGG | 0.402908 | 1.2:+5346142 | None:intergenic |
ACAGCAGTTGCAGGAAGCTT+AGG | 0.403204 | 1.2:-5342100 | MS.gene00528:CDS |
GGGCTGATGCATCAACTGTT+TGG | 0.410617 | 1.2:-5342715 | MS.gene00528:CDS |
CTCACAGTTACAACAGTACT+TGG | 0.414026 | 1.2:+5342133 | None:intergenic |
AAGAAGGCATCAGAGCAATA+TGG | 0.415134 | 1.2:-5333174 | MS.gene00528:CDS |
GATATAGGAACGAGTCCGTC+GGG | 0.415488 | 1.2:-5336178 | MS.gene00528:intron |
GGGCTTGAAGCAAGACCATT+AGG | 0.420883 | 1.2:+5342265 | None:intergenic |
TGCCATATATTCAAACAAAC+AGG | 0.421533 | 1.2:-5346234 | MS.gene00528:CDS |
AGCTACTTGCAAAACGATAT+CGG | 0.425459 | 1.2:-5335175 | MS.gene00528:CDS |
ACCACTGATAATCCAGAAAC+TGG | 0.425854 | 1.2:+5342202 | None:intergenic |
AGAGTACAAGGCAATCTAGT+TGG | 0.428021 | 1.2:-5343519 | MS.gene00528:CDS |
TCCAACACTTTGACACCTAA+TGG | 0.429541 | 1.2:-5342280 | MS.gene00528:CDS |
CATCATCCTCTAGCCGATCC+TGG | 0.432068 | 1.2:+5338058 | None:intergenic |
GGAATGAGGAGCTTGAAGAT+GGG | 0.437118 | 1.2:-5332887 | MS.gene00528:CDS |
ACTTCCTTATATAGTTCAAT+TGG | 0.438478 | 1.2:-5333894 | MS.gene00528:intron |
AGCGACTACATCAGTATTTG+AGG | 0.439124 | 1.2:-5335223 | MS.gene00528:CDS |
ACTGCACCTACAGCAGTTGC+AGG | 0.439764 | 1.2:-5342109 | MS.gene00528:CDS |
TGGAGCACCTCTTCAAGATA+TGG | 0.442331 | 1.2:-5341889 | MS.gene00528:CDS |
AGGTTACTCAGCAATCAGTA+TGG | 0.449369 | 1.2:-5342528 | MS.gene00528:CDS |
CATGATTCTACTTCTGTCAA+TGG | 0.450616 | 1.2:-5341909 | MS.gene00528:CDS |
AACCAATGATGGTGAAACTT+TGG | 0.452007 | 1.2:-5341410 | MS.gene00528:CDS |
TGGAATGAGGAGCTTGAAGA+TGG | 0.452090 | 1.2:-5332888 | MS.gene00528:CDS |
GATGCAACAGCTTGATATTG+AGG | 0.452557 | 1.2:+5335943 | None:intergenic |
CATCTTTGTGAATTCTTCAC+GGG | 0.455080 | 1.2:+5340846 | None:intergenic |
TCTTCTCCTCTCTATAACCA+TGG | 0.455879 | 1.2:+5333228 | None:intergenic |
GCAGGAGGTGCATGCATTTG+AGG | 0.456721 | 1.2:+5345959 | None:intergenic |
TACTCCAAAAGATTTATTTG+AGG | 0.462163 | 1.2:-5335905 | MS.gene00528:CDS |
GTCGGGATGCCTGCTATTCA+AGG | 0.463184 | 1.2:-5346349 | MS.gene00528:CDS |
GACGACCAAGGTTGTCCGGC+AGG | 0.464632 | 1.2:+5345941 | None:intergenic |
CCCATGACTTCACAACAATT+CGG | 0.467987 | 1.2:-5346403 | MS.gene00528:CDS |
GAGTACAAGGCAATCTAGTT+GGG | 0.468679 | 1.2:-5343518 | MS.gene00528:CDS |
TGATTATCAGTGGCAACAAC+TGG | 0.471567 | 1.2:+5342229 | None:intergenic |
AACGAGTCCGTCGGGGTGAA+AGG | 0.472697 | 1.2:-5336170 | MS.gene00528:CDS |
TGAGGACGACCAAGGTTGTC+CGG | 0.473310 | 1.2:+5345937 | None:intergenic |
CTTTGAAAATCTTGAAAAGC+AGG | 0.473646 | 1.2:-5335878 | MS.gene00528:intron |
GGCACATAAAACTATTAGCC+AGG | 0.474323 | 1.2:-5342386 | MS.gene00528:CDS |
TTGTTTCTGACACCATTCCC+TGG | 0.476710 | 1.2:+5342368 | None:intergenic |
ACAACTGGTGTAACAGAAGA+TGG | 0.477825 | 1.2:+5342244 | None:intergenic |
AGCAGAGGAGGCAGCAGCAT+TGG | 0.478603 | 1.2:+5342336 | None:intergenic |
CCGGCTGGAGTTCAATCATC+TGG | 0.478668 | 1.2:-5345878 | MS.gene00528:CDS |
ACATCTTTGTGAATTCTTCA+CGG | 0.482860 | 1.2:+5340845 | None:intergenic |
GTTCACACCATCTTATGGTC+AGG | 0.487720 | 1.2:-5346005 | MS.gene00528:CDS |
CCATTCAGTATTTGGGTCAA+AGG | 0.489226 | 1.2:-5340912 | MS.gene00528:intron |
GGAATACATTACATACTTGA+AGG | 0.490150 | 1.2:-5333841 | MS.gene00528:CDS |
CATAAAAGATATACTTAAGT+CGG | 0.491240 | 1.2:-5335352 | MS.gene00528:CDS |
GCAACAACTCTGCATCTGAT+TGG | 0.493344 | 1.2:-5343751 | MS.gene00528:CDS |
AAGCTTCCTGCAACTGCTGT+AGG | 0.493376 | 1.2:+5342103 | None:intergenic |
CACCTCCTGCCGGACAACCT+TGG | 0.495114 | 1.2:-5345946 | MS.gene00528:CDS |
GTGGCGAGATTATTGCTTGA+AGG | 0.495782 | 1.2:-5336076 | MS.gene00528:intron |
GCAGGACTATATTCGTGACT+TGG | 0.496186 | 1.2:-5336309 | MS.gene00528:intron |
TCACAACAATTCGGACATGC+AGG | 0.496394 | 1.2:-5346394 | MS.gene00528:CDS |
TGACCGGGCTGAATTTGTCT+TGG | 0.497049 | 1.2:+5346286 | None:intergenic |
TCATCCTGTTTCATCATCAC+AGG | 0.497226 | 1.2:-5346266 | MS.gene00528:CDS |
GATATCGGAGATCAATTTGA+AGG | 0.497316 | 1.2:-5335160 | MS.gene00528:intron |
AGTACTTGGTTCGACTCCTA+TGG | 0.497457 | 1.2:+5342147 | None:intergenic |
ATAAAAGATATACTTAAGTC+GGG | 0.500700 | 1.2:-5335351 | MS.gene00528:CDS |
ATTAGAGAGAGCTAAGGAGA+AGG | 0.502167 | 1.2:-5334235 | MS.gene00528:CDS |
CCGTTCCTTCATCTAATGTC+GGG | 0.507422 | 1.2:-5346366 | MS.gene00528:CDS |
GCCGTTCCTTCATCTAATGT+CGG | 0.508127 | 1.2:-5346367 | MS.gene00528:CDS |
TTGGAGCTAGCTGCATTAGC+TGG | 0.508131 | 1.2:+5342298 | None:intergenic |
AGAGAGAGCTAAGGAGAAGG+AGG | 0.508555 | 1.2:-5334232 | MS.gene00528:CDS |
TATTATTACTTCTTCAACAT+GGG | 0.510330 | 1.2:-5334051 | MS.gene00528:CDS |
AATTGCTGACCTTGAATAGC+AGG | 0.511307 | 1.2:+5346340 | None:intergenic |
AGAGTTATTAGAGAGAGCTA+AGG | 0.512572 | 1.2:-5334241 | MS.gene00528:CDS |
CATGCATTTGAGGCGGATGC+TGG | 0.512699 | 1.2:+5345969 | None:intergenic |
TCAGAGCAATATGGAGGATG+TGG | 0.513107 | 1.2:-5333165 | MS.gene00528:CDS |
TCTCCTGAGTCAGACAATGA+AGG | 0.513236 | 1.2:-5332963 | MS.gene00528:CDS |
GGCGGAATTTAGCAGAATAT+AGG | 0.514204 | 1.2:-5338231 | MS.gene00528:CDS |
TTTGTTTGAATATATGGCAT+AGG | 0.515540 | 1.2:+5346238 | None:intergenic |
CAAATGCATGCACCTCCTGC+CGG | 0.518916 | 1.2:-5345956 | MS.gene00528:CDS |
CATGGTGGAACTTGAGAGAA+AGG | 0.520392 | 1.2:-5340494 | MS.gene00528:intron |
AAAGACACAAGAGGGACCAC+GGG | 0.521871 | 1.2:-5332932 | MS.gene00528:CDS |
CTCCCTTCATTGTCTGACTC+AGG | 0.522487 | 1.2:+5332960 | None:intergenic |
CTAGAAGAACATATTGCTGA+TGG | 0.524243 | 1.2:-5336120 | MS.gene00528:CDS |
TGCTTGAAGTAACGACAGAA+TGG | 0.525508 | 1.2:+5342170 | None:intergenic |
GAGCTTGAAGATGGGGAGCT+TGG | 0.528342 | 1.2:-5332879 | MS.gene00528:CDS |
GTAACGTCTGTACAGCCGGC+TGG | 0.529488 | 1.2:-5345893 | MS.gene00528:CDS |
CAAGAGCATACTGCTGGTGA+TGG | 0.531052 | 1.2:-5343728 | MS.gene00528:CDS |
TTTGGTATATGCAAATAAGC+TGG | 0.531455 | 1.2:-5341392 | MS.gene00528:intron |
AAGAGAGAAAACATCGAAGA+AGG | 0.532161 | 1.2:-5333190 | MS.gene00528:CDS |
ACCATTAGGTGTCAAAGTGT+TGG | 0.536875 | 1.2:+5342279 | None:intergenic |
TTCTCAACAAATGCAACAGT+TGG | 0.538488 | 1.2:-5346311 | MS.gene00528:CDS |
CTGTTGAAAGAGTAAGAGAT+CGG | 0.540036 | 1.2:-5340537 | MS.gene00528:CDS |
AGATTTATTTGAAAGCTACA+TGG | 0.541453 | 1.2:-5340512 | MS.gene00528:CDS |
GCTGTTGCATCAAATGCATC+CGG | 0.543055 | 1.2:-5335931 | MS.gene00528:CDS |
CGTACAGTGTATAGAGATTG+AGG | 0.543077 | 1.2:+5346124 | None:intergenic |
TGATGATGAAACAGGATGAC+CGG | 0.543456 | 1.2:+5346270 | None:intergenic |
AGCTGTAACGTCTGTACAGC+CGG | 0.544674 | 1.2:-5345897 | MS.gene00528:CDS |
AGAAGCTAGAGGCTGAAGAA+AGG | 0.544989 | 1.2:-5340888 | MS.gene00528:CDS |
ACGTAAGCGTGAAGAAGAAA+AGG | 0.545043 | 1.2:-5333799 | MS.gene00528:intron |
TGATATAGGAACGAGTCCGT+CGG | 0.545937 | 1.2:-5336179 | MS.gene00528:intron |
TGACTTGGAGAAGGAGGAAG+AGG | 0.546026 | 1.2:-5336294 | MS.gene00528:CDS |
ATACTGCTGGTGATGGGAGA+AGG | 0.548219 | 1.2:-5343721 | MS.gene00528:intron |
GAAGTGACCGCAAGAAGTCT+AGG | 0.551692 | 1.2:-5333094 | MS.gene00528:CDS |
GGAGTTGATGTCACCTCTTG+AGG | 0.553125 | 1.2:-5343485 | MS.gene00528:intron |
ATACCTTCCTAGACTTCTTG+CGG | 0.553463 | 1.2:+5333087 | None:intergenic |
GAAAGAGTTCACTTCTTCAG+AGG | 0.554876 | 1.2:-5342693 | MS.gene00528:CDS |
TTCAACATGGGAGGAATGCA+AGG | 0.556166 | 1.2:-5334039 | MS.gene00528:CDS |
TCTAGAAAATCGCGAAGACA+TGG | 0.556892 | 1.2:-5333116 | MS.gene00528:CDS |
ATACCCTGTGATGATGAAAC+AGG | 0.557450 | 1.2:+5346262 | None:intergenic |
CAGGAGAAGTGGATGGAATG+AGG | 0.557842 | 1.2:-5332901 | MS.gene00528:CDS |
TCCGAATTGTTGTGAAGTCA+TGG | 0.558122 | 1.2:+5346402 | None:intergenic |
CTCCTGAGTCAGACAATGAA+GGG | 0.558423 | 1.2:-5332962 | MS.gene00528:CDS |
GAGCTAGCTGCATTAGCTGG+TGG | 0.559039 | 1.2:+5342301 | None:intergenic |
GCTTGAAGTAACGACAGAAT+GGG | 0.559357 | 1.2:+5342171 | None:intergenic |
TAAAGTCATCAGCAAGGCGT+TGG | 0.560032 | 1.2:+5334190 | None:intergenic |
AGTTGATGTTGCAGCAGAGG+AGG | 0.561689 | 1.2:+5342324 | None:intergenic |
AAAAGACACAAGAGGGACCA+CGG | 0.563924 | 1.2:-5332933 | MS.gene00528:CDS |
TCAGAGGAGAAAACCAATGA+TGG | 0.566057 | 1.2:-5341421 | MS.gene00528:CDS |
TAAAACTATTAGCCAGGGAA+TGG | 0.567415 | 1.2:-5342380 | MS.gene00528:CDS |
TATATTCTGCTAAATTCCGC+CGG | 0.569486 | 1.2:+5338233 | None:intergenic |
AACATAATTTCATACATGGA+TGG | 0.570571 | 1.2:+5342046 | None:intergenic |
AGCTAACATCATCCACAAGA+TGG | 0.570809 | 1.2:-5340703 | MS.gene00528:CDS |
GTCGTTACTTCAAGCACCAT+AGG | 0.571185 | 1.2:-5342163 | MS.gene00528:CDS |
CTATATTCGTGACTTGGAGA+AGG | 0.573107 | 1.2:-5336303 | MS.gene00528:CDS |
CACATAAACAATCATATGCA+TGG | 0.577352 | 1.2:-5346169 | MS.gene00528:CDS |
ACGGTTCCAGGAGAAGTGGA+TGG | 0.580383 | 1.2:-5332908 | MS.gene00528:CDS |
TATTACTTCTTCAACATGGG+AGG | 0.581858 | 1.2:-5334048 | MS.gene00528:CDS |
AAAGAGTTCACTTCTTCAGA+GGG | 0.582420 | 1.2:-5342692 | MS.gene00528:CDS |
GGAAAAGGAAAATGCTGCTG+AGG | 0.585150 | 1.2:-5338260 | MS.gene00528:CDS |
ATGTACCTTCACAAAATCAC+AGG | 0.586297 | 1.2:+5338195 | None:intergenic |
CCAGATGATTGAACTCCAGC+CGG | 0.587420 | 1.2:+5345878 | None:intergenic |
TATAATGCCCTGAAAACACT+TGG | 0.587574 | 1.2:-5341078 | MS.gene00528:CDS |
CTGCAGGTATTATTACAACA+AGG | 0.589073 | 1.2:-5342548 | MS.gene00528:intron |
TGTTGAAAGAGTAAGAGATC+GGG | 0.589167 | 1.2:-5340536 | MS.gene00528:CDS |
GAATGAGGAGCTTGAAGATG+GGG | 0.589298 | 1.2:-5332886 | MS.gene00528:CDS |
GACAATACCAGAAGAGCTCA+AGG | 0.593828 | 1.2:-5342506 | MS.gene00528:intron |
ACATTAGTTTGTCCAACCAC+AGG | 0.594069 | 1.2:+5341451 | None:intergenic |
GATTGGCAAGAGCATACTGC+TGG | 0.595223 | 1.2:-5343734 | MS.gene00528:CDS |
GGGGACGGTTCCAGGAGAAG+TGG | 0.596083 | 1.2:-5332912 | MS.gene00528:CDS |
ATGTTCATTCTGATTGGACG+TGG | 0.597884 | 1.2:-5341215 | MS.gene00528:CDS |
CACAAGAGGGACCACGGGGA+CGG | 0.599081 | 1.2:-5332927 | MS.gene00528:CDS |
AATACCTCCATATCTTGAAG+AGG | 0.599572 | 1.2:+5341882 | None:intergenic |
AGATATACTTAAGTCGGGCA+AGG | 0.600167 | 1.2:-5335346 | MS.gene00528:intron |
AAAATGCTGCTGAGGAACAC+CGG | 0.602673 | 1.2:-5338252 | MS.gene00528:CDS |
CAACTGGTGTAACAGAAGAT+GGG | 0.603013 | 1.2:+5342245 | None:intergenic |
GGCATCCCGACATTAGATGA+AGG | 0.603036 | 1.2:+5346361 | None:intergenic |
TAACTTATTATATACACTCA+AGG | 0.603685 | 1.2:-5334166 | MS.gene00528:intron |
ATTACTACAACAAGAGTACA+AGG | 0.603856 | 1.2:-5343531 | MS.gene00528:CDS |
AAATACTGATGTAGTCGCTA+CGG | 0.604006 | 1.2:+5335227 | None:intergenic |
CCCGACATTAGATGAAGGAA+CGG | 0.604025 | 1.2:+5346366 | None:intergenic |
AACTAATGTGACTCCTTCAG+AGG | 0.605322 | 1.2:-5341437 | MS.gene00528:CDS |
TGGAGTTGATGTTGCAGCAG+AGG | 0.607065 | 1.2:+5342321 | None:intergenic |
AAAATTATACCTCCATCTTG+TGG | 0.609019 | 1.2:+5340691 | None:intergenic |
TGAGGCGGATGCTGGTATTG+GGG | 0.609946 | 1.2:+5345977 | None:intergenic |
ACAGCTTGGTGTGCATGTTG+TGG | 0.610265 | 1.2:+5346196 | None:intergenic |
TTCTCCTGGAACCGTCCCCG+TGG | 0.611301 | 1.2:+5332916 | None:intergenic |
AACTGGTCGTTGATTATCAG+TGG | 0.611617 | 1.2:+5342219 | None:intergenic |
ATATTATTACTTCTTCAACA+TGG | 0.611639 | 1.2:-5334052 | MS.gene00528:CDS |
TTTATTTGAAAGCTACATGG+TGG | 0.617248 | 1.2:-5340509 | MS.gene00528:CDS |
ACCAGTTTCTGGATTATCAG+TGG | 0.617569 | 1.2:-5342203 | MS.gene00528:CDS |
TGCATATGATTGTTTATGTG+AGG | 0.618480 | 1.2:+5346172 | None:intergenic |
CACAACAATTCGGACATGCA+GGG | 0.622894 | 1.2:-5346393 | MS.gene00528:CDS |
AGATGCAGAGTTGTTGCTAG+TGG | 0.623592 | 1.2:+5343757 | None:intergenic |
GAGGCATAAAAGACACAAGA+GGG | 0.628856 | 1.2:-5332940 | MS.gene00528:CDS |
AAGAGCATACTGCTGGTGAT+GGG | 0.629015 | 1.2:-5343727 | MS.gene00528:CDS |
GACCAAGGTTGTCCGGCAGG+AGG | 0.629097 | 1.2:+5345944 | None:intergenic |
TGTTTATGTGAGGAACAGCT+TGG | 0.631811 | 1.2:+5346182 | None:intergenic |
GGCAATGCCTGACCATAAGA+TGG | 0.632811 | 1.2:+5345998 | None:intergenic |
TATTCGTGACTTGGAGAAGG+AGG | 0.635163 | 1.2:-5336300 | MS.gene00528:CDS |
GCTCCAAGACAAATTCAGCC+CGG | 0.637474 | 1.2:-5346289 | MS.gene00528:CDS |
AGAGGTGACATCAACTCCAA+AGG | 0.638169 | 1.2:+5343490 | None:intergenic |
CATCCTGTTTCATCATCACA+GGG | 0.640900 | 1.2:-5346265 | MS.gene00528:CDS |
CAAGACATGACTGACAGCCA+TGG | 0.642401 | 1.2:-5333245 | MS.gene00528:CDS |
TGACCGCAAGAAGTCTAGGA+AGG | 0.647233 | 1.2:-5333090 | MS.gene00528:intron |
GCAACTTGCGAAATGCATCA+CGG | 0.647762 | 1.2:+5336142 | None:intergenic |
GCACATAAAACTATTAGCCA+GGG | 0.652408 | 1.2:-5342385 | MS.gene00528:CDS |
GTATGCTTGAAAATGATGAA+CGG | 0.652437 | 1.2:-5340567 | MS.gene00528:CDS |
AGTTAGTAAAGTCATCAGCA+AGG | 0.652933 | 1.2:+5334184 | None:intergenic |
GGAGGTGCATGCATTTGAGG+CGG | 0.653398 | 1.2:+5345962 | None:intergenic |
TGACAGCCATGGTTATAGAG+AGG | 0.655215 | 1.2:-5333234 | MS.gene00528:CDS |
AGCACCTCTTCAAGATATGG+AGG | 0.656627 | 1.2:-5341886 | MS.gene00528:intron |
CCGAATTGTTGTGAAGTCAT+GGG | 0.660354 | 1.2:+5346403 | None:intergenic |
GATGATGAAACAGGATGACC+GGG | 0.660914 | 1.2:+5346271 | None:intergenic |
GTTACAGCTGCAGCACTCTG+AGG | 0.670283 | 1.2:+5345911 | None:intergenic |
TAACATCATCCACAAGATGG+AGG | 0.670995 | 1.2:-5340700 | MS.gene00528:intron |
TGCAGCACTCTGAGGTACTG+AGG | 0.673442 | 1.2:+5345919 | None:intergenic |
GGAGCTTGGTGATGATGCAG+AGG | 0.676472 | 1.2:-5332865 | MS.gene00528:CDS |
GGGTCAAAGGAAGAAGCTAG+AGG | 0.686231 | 1.2:-5340899 | MS.gene00528:CDS |
TGAGGTACTGAGGACGACCA+AGG | 0.686869 | 1.2:+5345929 | None:intergenic |
GGAGGCATAAAAGACACAAG+AGG | 0.688744 | 1.2:-5332941 | MS.gene00528:CDS |
ATATAGGAACGAGTCCGTCG+GGG | 0.690250 | 1.2:-5336177 | MS.gene00528:intron |
AAGGCATCAGAGCAATATGG+AGG | 0.690422 | 1.2:-5333171 | MS.gene00528:CDS |
CTGAGTCAGACAATGAAGGG+AGG | 0.695593 | 1.2:-5332959 | MS.gene00528:CDS |
TGTTCATTCTGATTGGACGT+GGG | 0.712631 | 1.2:-5341214 | MS.gene00528:CDS |
TGTTGTGGAACAGATGTCAG+TGG | 0.716753 | 1.2:+5346211 | None:intergenic |
AAGACACAAGAGGGACCACG+GGG | 0.722637 | 1.2:-5332931 | MS.gene00528:CDS |
ATGCTGCTGAGGAACACCGG+CGG | 0.733976 | 1.2:-5338249 | MS.gene00528:CDS |
ACAGTGTATAGAGATTGAGG+AGG | 0.757065 | 1.2:+5346127 | None:intergenic |
TTCTTACTGCTAAAACACAG+TGG | 0.768613 | 1.2:-5336095 | MS.gene00528:CDS |
GCGAAAACAAGCTTTCAACG+AGG | 0.790814 | 1.2:-5341052 | MS.gene00528:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 5332860 | 5346422 | 5332860 | ID=MS.gene00528 |
chr1.2 | mRNA | 5332860 | 5346422 | 5332860 | ID=MS.gene00528.t1;Parent=MS.gene00528 |
chr1.2 | exon | 5346129 | 5346422 | 5346129 | ID=MS.gene00528.t1.exon1;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5346129 | 5346422 | 5346129 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5345859 | 5346026 | 5345859 | ID=MS.gene00528.t1.exon2;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5345859 | 5346026 | 5345859 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5343722 | 5343789 | 5343722 | ID=MS.gene00528.t1.exon3;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5343722 | 5343789 | 5343722 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5343486 | 5343555 | 5343486 | ID=MS.gene00528.t1.exon4;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5343486 | 5343555 | 5343486 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5342686 | 5342738 | 5342686 | ID=MS.gene00528.t1.exon5;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5342686 | 5342738 | 5342686 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5342507 | 5342564 | 5342507 | ID=MS.gene00528.t1.exon6;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5342507 | 5342564 | 5342507 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5342061 | 5342422 | 5342061 | ID=MS.gene00528.t1.exon7;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5342061 | 5342422 | 5342061 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5341887 | 5341950 | 5341887 | ID=MS.gene00528.t1.exon8;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5341887 | 5341950 | 5341887 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5341393 | 5341491 | 5341393 | ID=MS.gene00528.t1.exon9;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5341393 | 5341491 | 5341393 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5341209 | 5341277 | 5341209 | ID=MS.gene00528.t1.exon10;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5341209 | 5341277 | 5341209 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5341053 | 5341130 | 5341053 | ID=MS.gene00528.t1.exon11;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5341053 | 5341130 | 5341053 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5340840 | 5340926 | 5340840 | ID=MS.gene00528.t1.exon12;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5340840 | 5340926 | 5340840 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5340701 | 5340735 | 5340701 | ID=MS.gene00528.t1.exon13;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5340701 | 5340735 | 5340701 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5340495 | 5340600 | 5340495 | ID=MS.gene00528.t1.exon14;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5340495 | 5340600 | 5340495 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5338201 | 5338281 | 5338201 | ID=MS.gene00528.t1.exon15;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5338201 | 5338281 | 5338201 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5338011 | 5338103 | 5338011 | ID=MS.gene00528.t1.exon16;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5338011 | 5338103 | 5338011 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5336274 | 5336327 | 5336274 | ID=MS.gene00528.t1.exon17;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5336274 | 5336327 | 5336274 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5336077 | 5336193 | 5336077 | ID=MS.gene00528.t1.exon18;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5336077 | 5336193 | 5336077 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5335879 | 5335977 | 5335879 | ID=MS.gene00528.t1.exon19;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5335879 | 5335977 | 5335879 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5335347 | 5335394 | 5335347 | ID=MS.gene00528.t1.exon20;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5335347 | 5335394 | 5335347 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5335161 | 5335253 | 5335161 | ID=MS.gene00528.t1.exon21;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5335161 | 5335253 | 5335161 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5334167 | 5334274 | 5334167 | ID=MS.gene00528.t1.exon22;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5334167 | 5334274 | 5334167 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5334011 | 5334075 | 5334011 | ID=MS.gene00528.t1.exon23;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5334011 | 5334075 | 5334011 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5333800 | 5333902 | 5333800 | ID=MS.gene00528.t1.exon24;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5333800 | 5333902 | 5333800 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5333091 | 5333396 | 5333091 | ID=MS.gene00528.t1.exon25;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5333091 | 5333396 | 5333091 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
chr1.2 | exon | 5332860 | 5332994 | 5332860 | ID=MS.gene00528.t1.exon26;Parent=MS.gene00528.t1 |
chr1.2 | CDS | 5332860 | 5332994 | 5332860 | ID=cds.MS.gene00528.t1;Parent=MS.gene00528.t1 |
Gene Sequence |
Protein sequence |