Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74436.t1 | XP_013451410.1 | 98.6 | 436 | 6 | 0 | 1 | 436 | 123 | 558 | 3.80E-250 | 873.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74436.t1 | Q9FMT4 | 78.4 | 436 | 92 | 2 | 1 | 435 | 99 | 533 | 5.2e-200 | 698.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74436.t1 | A0A072UI25 | 98.6 | 436 | 6 | 0 | 1 | 436 | 123 | 558 | 2.7e-250 | 873.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene74436.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66483 | MS.gene74436 | PPI |
| MS.gene00528 | MS.gene74436 | PPI |
| MS.gene74436 | MS.gene05049 | PPI |
| MS.gene050408 | MS.gene74436 | PPI |
| MS.gene061594 | MS.gene74436 | PPI |
| MS.gene07047 | MS.gene74436 | PPI |
| MS.gene74436 | MS.gene049666 | PPI |
| MS.gene051669 | MS.gene74436 | PPI |
| MS.gene072703 | MS.gene74436 | PPI |
| MS.gene24501 | MS.gene74436 | PPI |
| MS.gene28806 | MS.gene74436 | PPI |
| MS.gene008363 | MS.gene74436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74436.t1 | MTR_6g023835 | 98.624 | 436 | 6 | 0 | 1 | 436 | 123 | 558 | 0.0 | 895 |
| MS.gene74436.t1 | MTR_4g103600 | 58.275 | 429 | 176 | 3 | 6 | 433 | 102 | 528 | 0.0 | 519 |
| MS.gene74436.t1 | MTR_3g089140 | 58.716 | 436 | 173 | 6 | 1 | 432 | 100 | 532 | 5.00e-180 | 513 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74436.t1 | AT5G14170 | 78.440 | 436 | 92 | 2 | 1 | 435 | 99 | 533 | 0.0 | 710 |
| MS.gene74436.t1 | AT3G01890 | 70.258 | 427 | 105 | 7 | 6 | 429 | 51 | 458 | 0.0 | 581 |
Find 104 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCTCTTCAGAAAGTATT+TGG | 0.145085 | 6.4:+280350 | MS.gene74436:CDS |
| TCTTAGGTATCGTGCGAATT+TGG | 0.236171 | 6.4:-279890 | None:intergenic |
| TAGAAAGAAGGTTGATATTC+AGG | 0.242285 | 6.4:+279800 | MS.gene74436:CDS |
| AGGAGGCGGGCATTCTTTCT+TGG | 0.270814 | 6.4:+280635 | MS.gene74436:CDS |
| GGCTCGGCATTTGGCTTCTT+AGG | 0.274246 | 6.4:-279906 | None:intergenic |
| TCTAGGTATCACGTGCTTCC+TGG | 0.306640 | 6.4:-281744 | None:intergenic |
| CCCTCCACCACCTATAGTTC+TGG | 0.307931 | 6.4:+280427 | MS.gene74436:CDS |
| AAGGGAGTTGTCTGCACTAT+TGG | 0.318030 | 6.4:+280532 | MS.gene74436:CDS |
| AGCCTCTTCAGAAAGTATTT+GGG | 0.344612 | 6.4:+280351 | MS.gene74436:CDS |
| CACGTCGGAGGCTCGGCATT+TGG | 0.346531 | 6.4:-279915 | None:intergenic |
| CTTTCCTGCATTGGTTTCTC+AGG | 0.350339 | 6.4:-279699 | None:intergenic |
| CAAGAATTATTGCTGCGATA+TGG | 0.358007 | 6.4:+280267 | MS.gene74436:CDS |
| TGAACTACTCCCGGCTGATC+AGG | 0.367241 | 6.4:-279981 | None:intergenic |
| CATATCGCAGCAATAATTCT+TGG | 0.368476 | 6.4:-280266 | None:intergenic |
| TTCTTCCTCCGTGCAGCAGC+AGG | 0.379617 | 6.4:-279666 | None:intergenic |
| GAAGATAGTTGGGAGGGTAT+TGG | 0.394511 | 6.4:+279944 | MS.gene74436:CDS |
| TCGTCGTCGATGTCTACGCC+TGG | 0.413216 | 6.4:+279543 | None:intergenic |
| GAAAGTATTTGGGGAAGAAA+AGG | 0.423540 | 6.4:+280361 | MS.gene74436:CDS |
| GCAGACAACTCCCTTTGAAT+AGG | 0.427857 | 6.4:-280524 | None:intergenic |
| TTAAAGAAAGCCGAGAACTT+TGG | 0.432630 | 6.4:-280023 | None:intergenic |
| GAAAATCCAACCGGCCTCAT+AGG | 0.434394 | 6.4:-279600 | None:intergenic |
| GCAGCCACCCTTTCCTGCAT+TGG | 0.440696 | 6.4:-279708 | None:intergenic |
| TGTGTATAAAGAGCAGATTC+CGG | 0.456024 | 6.4:-279738 | None:intergenic |
| TCAAAACCTTCTTGAGGAGC+AGG | 0.460085 | 6.4:-280119 | None:intergenic |
| ATCTGATGCTCCAGAACTAT+AGG | 0.460674 | 6.4:-280437 | None:intergenic |
| ACCGATGTATCCAAAGTTCT+CGG | 0.461991 | 6.4:+280013 | MS.gene74436:CDS |
| CCACACAATAGTGTTGTTCT+CGG | 0.463598 | 6.4:-280081 | None:intergenic |
| AAGGCATTAATAAATTCTAC+TGG | 0.468844 | 6.4:-280671 | None:intergenic |
| GGTGAAAGCTTAAACTTCTC+AGG | 0.469046 | 6.4:-280203 | None:intergenic |
| CGGCGTTGACCCTGATCAGC+CGG | 0.472999 | 6.4:+279971 | MS.gene74436:CDS |
| CTATCGGGAAATAGTCCAGC+TGG | 0.478886 | 6.4:+280464 | MS.gene74436:CDS |
| TGCTCAAAGCTTACCATGGT+TGG | 0.480015 | 6.4:-280781 | None:intergenic |
| CGTGGACTCTGAAGATAGTT+GGG | 0.481652 | 6.4:+279934 | MS.gene74436:CDS |
| CGATCACCTGCTCCTCAAGA+AGG | 0.484816 | 6.4:+280113 | MS.gene74436:CDS |
| TGCTGCACTTTCTAGAAAGA+AGG | 0.485884 | 6.4:+279788 | MS.gene74436:CDS |
| AACTCCCTTTGAATAGGAAA+AGG | 0.491119 | 6.4:-280518 | None:intergenic |
| TAAGCTTTCACCAGCATTGA+CGG | 0.492158 | 6.4:+280214 | MS.gene74436:CDS |
| CTGAGAAACCAATGCAGGAA+AGG | 0.496111 | 6.4:+279700 | MS.gene74436:CDS |
| ACGTGGACTCTGAAGATAGT+TGG | 0.500504 | 6.4:+279933 | MS.gene74436:CDS |
| GGAGCATCACTTCCTGCAGC+GGG | 0.501664 | 6.4:-281723 | None:intergenic |
| CAGAGTCCACGTCGGAGGCT+CGG | 0.506975 | 6.4:-279922 | None:intergenic |
| TTTCTCGCCGTTGAGACCGA+TGG | 0.507861 | 6.4:+279635 | MS.gene74436:CDS |
| CCTTGATTGAATCTCAAAGC+AGG | 0.511145 | 6.4:+280690 | MS.gene74436:CDS |
| TTCTGAGGCGAAAATCCAAC+CGG | 0.514583 | 6.4:-279609 | None:intergenic |
| AGGGATCTGAAAGCTGCAGC+TGG | 0.516281 | 6.4:+280710 | MS.gene74436:CDS |
| TGAGAAACCAATGCAGGAAA+GGG | 0.518820 | 6.4:+279701 | MS.gene74436:CDS |
| GTCCTTTGAAACCACCTATG+AGG | 0.522585 | 6.4:+279586 | MS.gene74436:CDS |
| TCGTAACAAGCACTCCCAGC+TGG | 0.524770 | 6.4:-280479 | None:intergenic |
| TTGAATCGCAAACCCGCTGC+AGG | 0.527757 | 6.4:+281711 | MS.gene74436:CDS |
| GGAGCATCAGATCAAACTAT+CGG | 0.529729 | 6.4:+280448 | MS.gene74436:CDS |
| GCAAGAACTTCCGTCAATGC+TGG | 0.532598 | 6.4:-280224 | None:intergenic |
| AAACCACCTATGAGGCCGGT+TGG | 0.533220 | 6.4:+279594 | MS.gene74436:CDS |
| TCCAGAACTATAGGTGGTGG+AGG | 0.535658 | 6.4:-280428 | None:intergenic |
| TCCACGAGCATCGTAGGAGG+CGG | 0.535807 | 6.4:+280621 | MS.gene74436:CDS |
| TCCCCAAATACTTTCTGAAG+AGG | 0.537915 | 6.4:-280353 | None:intergenic |
| TGCTCCAGAACTATAGGTGG+TGG | 0.541684 | 6.4:-280431 | None:intergenic |
| TTTGAAACCACCTATGAGGC+CGG | 0.549023 | 6.4:+279590 | MS.gene74436:CDS |
| GAGCATCAGATCAAACTATC+GGG | 0.554086 | 6.4:+280449 | MS.gene74436:CDS |
| CGTCGTCGATGTCTACGCCT+GGG | 0.555750 | 6.4:+279544 | None:intergenic |
| CACACAATAGTGTTGTTCTC+GGG | 0.556965 | 6.4:-280080 | None:intergenic |
| CCTGCTTTGAGATTCAATCA+AGG | 0.560426 | 6.4:-280690 | None:intergenic |
| TGGAGCATCACTTCCTGCAG+CGG | 0.562803 | 6.4:-281724 | None:intergenic |
| CCACGAGCATCGTAGGAGGC+GGG | 0.563419 | 6.4:+280622 | MS.gene74436:CDS |
| TCGATGTCTACGCCTGGGAG+TGG | 0.563423 | 6.4:+279549 | None:intergenic |
| GAACTACTCCCGGCTGATCA+GGG | 0.569681 | 6.4:-279980 | None:intergenic |
| TATGGCACTATGTGAAGGCT+AGG | 0.572101 | 6.4:+280285 | MS.gene74436:CDS |
| TTCACTTCAAAACCTTCTTG+AGG | 0.576166 | 6.4:-280125 | None:intergenic |
| CCCGCCTCCTACGATGCTCG+TGG | 0.579778 | 6.4:-280622 | None:intergenic |
| AACTAACGCCTGCTGCTGCA+CGG | 0.579865 | 6.4:+279658 | MS.gene74436:CDS |
| GCAGCAGGCGTTAGTTCCAT+CGG | 0.581426 | 6.4:-279651 | None:intergenic |
| TCTCGAGTTTGAGTCTCGTG+TGG | 0.582039 | 6.4:+279764 | MS.gene74436:CDS |
| GGCGTTGACCCTGATCAGCC+GGG | 0.583042 | 6.4:+279972 | MS.gene74436:CDS |
| TTGTTCTCGGGATATAGCCT+CGG | 0.583394 | 6.4:-280068 | None:intergenic |
| GCTGCAGGAAGTGATGCTCC+AGG | 0.587547 | 6.4:+281726 | MS.gene74436:CDS |
| GCCTCTTCAGAAAGTATTTG+GGG | 0.589482 | 6.4:+280352 | MS.gene74436:CDS |
| GACGACTTCTGAACTACTCC+CGG | 0.592418 | 6.4:-279990 | None:intergenic |
| GACTCTGAAGATAGTTGGGA+GGG | 0.595717 | 6.4:+279938 | MS.gene74436:CDS |
| GGCCTCATAGGTGGTTTCAA+AGG | 0.597547 | 6.4:-279588 | None:intergenic |
| TAATCATTACTTTGGATCCG+AGG | 0.599509 | 6.4:+280051 | MS.gene74436:CDS |
| AAATCCACGAGCATCGTAGG+AGG | 0.600190 | 6.4:+280618 | MS.gene74436:CDS |
| GCTTCCTGAGAAACCAATGC+AGG | 0.601644 | 6.4:+279695 | MS.gene74436:CDS |
| CCGAGAACAACACTATTGTG+TGG | 0.601969 | 6.4:+280081 | MS.gene74436:CDS |
| GCCGAGAACTTTGGATACAT+CGG | 0.603059 | 6.4:-280014 | None:intergenic |
| ACATGTGATGAAGCGATATG+TGG | 0.611068 | 6.4:+280584 | MS.gene74436:CDS |
| AATCCAACCGGCCTCATAGG+TGG | 0.616407 | 6.4:-279597 | None:intergenic |
| GTTGGGAGGGTATTGGAAGA+CGG | 0.621134 | 6.4:+279951 | MS.gene74436:CDS |
| CGAGAACAACACTATTGTGT+GGG | 0.622889 | 6.4:+280082 | MS.gene74436:CDS |
| CTTGATTGAATCTCAAAGCA+GGG | 0.625702 | 6.4:+280691 | MS.gene74436:CDS |
| GAGTGCTTGTTACGATGCAA+TGG | 0.627382 | 6.4:+280487 | MS.gene74436:CDS |
| GGTGGTGGAGGGAACAAATG+TGG | 0.627777 | 6.4:-280416 | None:intergenic |
| ATCTTCAGAGTCCACGTCGG+AGG | 0.634474 | 6.4:-279927 | None:intergenic |
| GTTAGTTCCATCGGTCTCAA+CGG | 0.635089 | 6.4:-279642 | None:intergenic |
| TATCGGGAAATAGTCCAGCT+GGG | 0.641484 | 6.4:+280465 | MS.gene74436:CDS |
| GAAACCAATGCAGGAAAGGG+TGG | 0.642837 | 6.4:+279704 | MS.gene74436:CDS |
| TGCGATATGGCACTATGTGA+AGG | 0.645164 | 6.4:+280280 | MS.gene74436:CDS |
| CCAGAACTATAGGTGGTGGA+GGG | 0.655511 | 6.4:-280427 | None:intergenic |
| GGACTCTGAAGATAGTTGGG+AGG | 0.655821 | 6.4:+279937 | MS.gene74436:CDS |
| CGTTTCGCACTACCACTCCC+AGG | 0.658662 | 6.4:-279561 | None:intergenic |
| GGGAGTGGTAGTGCGAAACG+TGG | 0.658870 | 6.4:+279564 | MS.gene74436:CDS |
| TGATGCTCCAGAACTATAGG+TGG | 0.665812 | 6.4:-280434 | None:intergenic |
| AACGGCGAGAAATTATTCTG+AGG | 0.687649 | 6.4:-279624 | None:intergenic |
| CAAATGCCGAGCCTCCGACG+TGG | 0.704392 | 6.4:+279916 | MS.gene74436:CDS |
| TAACGCCTGCTGCTGCACGG+AGG | 0.741030 | 6.4:+279661 | MS.gene74436:CDS |
| ACTATCTTCAGAGTCCACGT+CGG | 0.774690 | 6.4:-279930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAAACAATGG+AGG | - | chr6.4:280828-280847 | None:intergenic | 15.0% |
| !! | TAAAAAAGTAATCATTACTT+TGG | + | chr6.4:280043-280062 | MS.gene74436:CDS | 15.0% |
| !! | AACTTAGTATATATGTTAGT+TGG | + | chr6.4:281247-281266 | MS.gene74436:intron | 20.0% |
| !! | TGTCAAAAAGTTGTTAAAAA+AGG | - | chr6.4:280984-281003 | None:intergenic | 20.0% |
| !!! | AATTAATTTGCAATCAAAGA+TGG | - | chr6.4:280886-280905 | None:intergenic | 20.0% |
| !!! | TACAACTTTTATGACAATTT+TGG | - | chr6.4:281095-281114 | None:intergenic | 20.0% |
| !!! | TATTATTTTTGACCAATCAA+AGG | + | chr6.4:281061-281080 | MS.gene74436:intron | 20.0% |
| !!! | TCTGTATTTTCTATGTTTTA+TGG | + | chr6.4:281586-281605 | MS.gene74436:intron | 20.0% |
| !!! | TTCAAATGTTTTAAAATGCA+TGG | + | chr6.4:281510-281529 | MS.gene74436:intron | 20.0% |
| ! | AACTAAGACAATATATGGAA+GGG | - | chr6.4:281209-281228 | None:intergenic | 25.0% |
| ! | AGCATAATTTGAACAAATCA+TGG | + | chr6.4:281346-281365 | MS.gene74436:intron | 25.0% |
| ! | ATATATTGTCTTAGTTGTTG+AGG | + | chr6.4:281213-281232 | MS.gene74436:intron | 25.0% |
| ! | TCAACAACTAAGACAATATA+TGG | - | chr6.4:281214-281233 | None:intergenic | 25.0% |
| ! | TTATTCTGCTATATGCTATT+TGG | + | chr6.4:281369-281388 | MS.gene74436:intron | 25.0% |
| !! | AAGGCATTAATAAATTCTAC+TGG | - | chr6.4:280674-280693 | None:intergenic | 25.0% |
| !! | ATATTCCTTTTCCTATTCAA+AGG | + | chr6.4:280513-280532 | MS.gene74436:CDS | 25.0% |
| !! | TATTCCTTTTCCTATTCAAA+GGG | + | chr6.4:280514-280533 | MS.gene74436:CDS | 25.0% |
| !!! | GATTCTAGTCTTATTTTAAC+TGG | - | chr6.4:281560-281579 | None:intergenic | 25.0% |
| AATGAAATCCTATCATACCA+TGG | - | chr6.4:281491-281510 | None:intergenic | 30.0% | |
| ACTAAGACAATATATGGAAG+GGG | - | chr6.4:281208-281227 | None:intergenic | 30.0% | |
| ATATATGTTAGTTGGACTGT+TGG | + | chr6.4:281255-281274 | MS.gene74436:intron | 30.0% | |
| CAACTAAGACAATATATGGA+AGG | - | chr6.4:281210-281229 | None:intergenic | 30.0% | |
| GATCACAGTGAAAAAAAGAA+GGG | - | chr6.4:280331-280350 | None:intergenic | 30.0% | |
| GTGATATTTGTACAACTCTT+TGG | - | chr6.4:281118-281137 | None:intergenic | 30.0% | |
| TCAAAGATGGTAGCAAATAA+AGG | - | chr6.4:280873-280892 | None:intergenic | 30.0% | |
| TGATCACAGTGAAAAAAAGA+AGG | - | chr6.4:280332-280351 | None:intergenic | 30.0% | |
| !! | CACAAAGTATTGGCAAATAT+CGG | + | chr6.4:281392-281411 | MS.gene74436:intron | 30.0% |
| !! | TAGAAAGAAGGTTGATATTC+AGG | + | chr6.4:279800-279819 | MS.gene74436:CDS | 30.0% |
| !!! | TTCTTTTTTGAAATGGGGAA+GGG | - | chr6.4:281183-281202 | None:intergenic | 30.0% |
| AACTCCCTTTGAATAGGAAA+AGG | - | chr6.4:280521-280540 | None:intergenic | 35.0% | |
| ATTGTTTGACAACATGAGCA+GGG | + | chr6.4:281665-281684 | MS.gene74436:intron | 35.0% | |
| CAAGAATTATTGCTGCGATA+TGG | + | chr6.4:280267-280286 | MS.gene74436:CDS | 35.0% | |
| CATATCGCAGCAATAATTCT+TGG | - | chr6.4:280269-280288 | None:intergenic | 35.0% | |
| CTTGATTGAATCTCAAAGCA+GGG | + | chr6.4:280691-280710 | MS.gene74436:CDS | 35.0% | |
| GAAAAAAAGAAGGGTCGTTA+GGG | - | chr6.4:280322-280341 | None:intergenic | 35.0% | |
| GAGTCAATCACAATCAATTC+CGG | - | chr6.4:280921-280940 | None:intergenic | 35.0% | |
| TAATCATTACTTTGGATCCG+AGG | + | chr6.4:280051-280070 | MS.gene74436:CDS | 35.0% | |
| TATCATACCATGGTCATACA+GGG | - | chr6.4:281481-281500 | None:intergenic | 35.0% | |
| TATTGTTTGACAACATGAGC+AGG | + | chr6.4:281664-281683 | MS.gene74436:intron | 35.0% | |
| TGAAAAAAAGAAGGGTCGTT+AGG | - | chr6.4:280323-280342 | None:intergenic | 35.0% | |
| TGTGTATAAAGAGCAGATTC+CGG | - | chr6.4:279741-279760 | None:intergenic | 35.0% | |
| TTAAAGAAAGCCGAGAACTT+TGG | - | chr6.4:280026-280045 | None:intergenic | 35.0% | |
| TTCACTTCAAAACCTTCTTG+AGG | - | chr6.4:280128-280147 | None:intergenic | 35.0% | |
| TTGCAGGTCTTAGAAAATGA+TGG | - | chr6.4:281451-281470 | None:intergenic | 35.0% | |
| ! | AGAGTTTTCTGAATACAAGG+CGG | - | chr6.4:279840-279859 | None:intergenic | 35.0% |
| ! | CGAAGAGTTTTCTGAATACA+AGG | - | chr6.4:279843-279862 | None:intergenic | 35.0% |
| ! | GAAAGGGGATAAAGAGTTTT+CGG | + | chr6.4:280151-280170 | MS.gene74436:CDS | 35.0% |
| ! | TGCTATTTGGCACAAAGTAT+TGG | + | chr6.4:281382-281401 | MS.gene74436:intron | 35.0% |
| !! | AGCCTCTTCAGAAAGTATTT+GGG | + | chr6.4:280351-280370 | MS.gene74436:CDS | 35.0% |
| !! | GAAAGTATTTGGGGAAGAAA+AGG | + | chr6.4:280361-280380 | MS.gene74436:CDS | 35.0% |
| !! | TTGGTTTTCTCTCCTTTGAT+TGG | - | chr6.4:281076-281095 | None:intergenic | 35.0% |
| !!! | AAGAAGGTTTTGAAGTGAAG+AGG | + | chr6.4:280129-280148 | MS.gene74436:CDS | 35.0% |
| !!! | AGGGGACTTCTTTTTTGAAA+TGG | - | chr6.4:281190-281209 | None:intergenic | 35.0% |
| !!! | CAGATTTTTTCAACCAACCA+TGG | + | chr6.4:280768-280787 | MS.gene74436:CDS | 35.0% |
| !!! | CTTCTTTTTTGAAATGGGGA+AGG | - | chr6.4:281184-281203 | None:intergenic | 35.0% |
| !!! | GGGACTTCTTTTTTGAAATG+GGG | - | chr6.4:281188-281207 | None:intergenic | 35.0% |
| !!! | GGGGACTTCTTTTTTGAAAT+GGG | - | chr6.4:281189-281208 | None:intergenic | 35.0% |
| !!! | GTTTTGAAGTGAAGAGGAAA+GGG | + | chr6.4:280135-280154 | MS.gene74436:CDS | 35.0% |
| !!! | TTTTGAAGTGAAGAGGAAAG+GGG | + | chr6.4:280136-280155 | MS.gene74436:CDS | 35.0% |
| AACGGCGAGAAATTATTCTG+AGG | - | chr6.4:279627-279646 | None:intergenic | 40.0% | |
| ACATGTGATGAAGCGATATG+TGG | + | chr6.4:280584-280603 | MS.gene74436:CDS | 40.0% | |
| ACCGATGTATCCAAAGTTCT+CGG | + | chr6.4:280013-280032 | MS.gene74436:CDS | 40.0% | |
| ATAGTGCTCAAAGCTTACCA+TGG | - | chr6.4:280788-280807 | None:intergenic | 40.0% | |
| ATCTGATGCTCCAGAACTAT+AGG | - | chr6.4:280440-280459 | None:intergenic | 40.0% | |
| ATTAATTCACCATCGTCTGC+CGG | + | chr6.4:280899-280918 | MS.gene74436:intron | 40.0% | |
| CCTTGATTGAATCTCAAAGC+AGG | + | chr6.4:280690-280709 | MS.gene74436:CDS | 40.0% | |
| CGAGAACAACACTATTGTGT+GGG | + | chr6.4:280082-280101 | MS.gene74436:CDS | 40.0% | |
| CTATCATACCATGGTCATAC+AGG | - | chr6.4:281482-281501 | None:intergenic | 40.0% | |
| CTGTATGACCATGGTATGAT+AGG | + | chr6.4:281480-281499 | MS.gene74436:intron | 40.0% | |
| GAGCATCAGATCAAACTATC+GGG | + | chr6.4:280449-280468 | MS.gene74436:CDS | 40.0% | |
| GCGCCATATGAGATGAAAAT+AGG | - | chr6.4:281290-281309 | None:intergenic | 40.0% | |
| GGTGAAAGCTTAAACTTCTC+AGG | - | chr6.4:280206-280225 | None:intergenic | 40.0% | |
| TGAGAAACCAATGCAGGAAA+GGG | + | chr6.4:279701-279720 | MS.gene74436:CDS | 40.0% | |
| ! | CACACAATAGTGTTGTTCTC+GGG | - | chr6.4:280083-280102 | None:intergenic | 40.0% |
| ! | CCACACAATAGTGTTGTTCT+CGG | - | chr6.4:280084-280103 | None:intergenic | 40.0% |
| ! | GCGCCTATTTTCATCTCATA+TGG | + | chr6.4:281284-281303 | MS.gene74436:intron | 40.0% |
| ! | GGAGCATCAGATCAAACTAT+CGG | + | chr6.4:280448-280467 | MS.gene74436:CDS | 40.0% |
| ! | TAAGCTTTCACCAGCATTGA+CGG | + | chr6.4:280214-280233 | MS.gene74436:CDS | 40.0% |
| ! | TCCCCAAATACTTTCTGAAG+AGG | - | chr6.4:280356-280375 | None:intergenic | 40.0% |
| ! | TCTTAGGTATCGTGCGAATT+TGG | - | chr6.4:279893-279912 | None:intergenic | 40.0% |
| ! | TGCTGCACTTTCTAGAAAGA+AGG | + | chr6.4:279788-279807 | MS.gene74436:CDS | 40.0% |
| !! | CAGCCTCTTCAGAAAGTATT+TGG | + | chr6.4:280350-280369 | MS.gene74436:CDS | 40.0% |
| !! | CCTGCTTTGAGATTCAATCA+AGG | - | chr6.4:280693-280712 | None:intergenic | 40.0% |
| !! | GCCTCTTCAGAAAGTATTTG+GGG | + | chr6.4:280352-280371 | MS.gene74436:CDS | 40.0% |
| !!! | CATTTTCTAAGACCTGCAAC+TGG | + | chr6.4:281452-281471 | MS.gene74436:intron | 40.0% |
| !!! | GGTTTTGAAGTGAAGAGGAA+AGG | + | chr6.4:280134-280153 | MS.gene74436:CDS | 40.0% |
| AAGGGAGTTGTCTGCACTAT+TGG | + | chr6.4:280532-280551 | MS.gene74436:CDS | 45.0% | |
| ACTATCTTCAGAGTCCACGT+CGG | - | chr6.4:279933-279952 | None:intergenic | 45.0% | |
| CCGAGAACAACACTATTGTG+TGG | + | chr6.4:280081-280100 | MS.gene74436:CDS | 45.0% | |
| CTGAGAAACCAATGCAGGAA+AGG | + | chr6.4:279700-279719 | MS.gene74436:CDS | 45.0% | |
| GCAGACAACTCCCTTTGAAT+AGG | - | chr6.4:280527-280546 | None:intergenic | 45.0% | |
| GCCGAGAACTTTGGATACAT+CGG | - | chr6.4:280017-280036 | None:intergenic | 45.0% | |
| GTTAGTTCCATCGGTCTCAA+CGG | - | chr6.4:279645-279664 | None:intergenic | 45.0% | |
| TATCGGGAAATAGTCCAGCT+GGG | + | chr6.4:280465-280484 | MS.gene74436:CDS | 45.0% | |
| TATGGCACTATGTGAAGGCT+AGG | + | chr6.4:280285-280304 | MS.gene74436:CDS | 45.0% | |
| TCAAAACCTTCTTGAGGAGC+AGG | - | chr6.4:280122-280141 | None:intergenic | 45.0% | |
| TGATGCTCCAGAACTATAGG+TGG | - | chr6.4:280437-280456 | None:intergenic | 45.0% | |
| TGCGATATGGCACTATGTGA+AGG | + | chr6.4:280280-280299 | MS.gene74436:CDS | 45.0% | |
| TGCTCAAAGCTTACCATGGT+TGG | - | chr6.4:280784-280803 | None:intergenic | 45.0% | |
| TTGTTCTCGGGATATAGCCT+CGG | - | chr6.4:280071-280090 | None:intergenic | 45.0% | |
| ! | ACGTGGACTCTGAAGATAGT+TGG | + | chr6.4:279933-279952 | MS.gene74436:CDS | 45.0% |
| ! | CGTGGACTCTGAAGATAGTT+GGG | + | chr6.4:279934-279953 | MS.gene74436:CDS | 45.0% |
| ! | GAAAAATCCACGAGCATCGT+AGG | + | chr6.4:280615-280634 | MS.gene74436:CDS | 45.0% |
| ! | GAAGATAGTTGGGAGGGTAT+TGG | + | chr6.4:279944-279963 | MS.gene74436:CDS | 45.0% |
| ! | GACTCTGAAGATAGTTGGGA+GGG | + | chr6.4:279938-279957 | MS.gene74436:CDS | 45.0% |
| ! | GAGTGCTTGTTACGATGCAA+TGG | + | chr6.4:280487-280506 | MS.gene74436:CDS | 45.0% |
| ! | TTTGAAACCACCTATGAGGC+CGG | + | chr6.4:279590-279609 | MS.gene74436:CDS | 45.0% |
| !! | CTTTCCTGCATTGGTTTCTC+AGG | - | chr6.4:279702-279721 | None:intergenic | 45.0% |
| !! | GTCCTTTGAAACCACCTATG+AGG | + | chr6.4:279586-279605 | MS.gene74436:CDS | 45.0% |
| !! | TTCTGAGGCGAAAATCCAAC+CGG | - | chr6.4:279612-279631 | None:intergenic | 45.0% |
| !!! | TCTTTTTCAGCACTGCGACT+AGG | - | chr6.4:280740-280759 | None:intergenic | 45.0% |
| !! | TATAAAATAAAATAAAACAA+TGG | - | chr6.4:280831-280850 | None:intergenic | 5.0% |
| CAATCAATTCCGGCAGACGA+TGG | - | chr6.4:280911-280930 | None:intergenic | 50.0% | |
| CTATCGGGAAATAGTCCAGC+TGG | + | chr6.4:280464-280483 | MS.gene74436:CDS | 50.0% | |
| GAAAATCCAACCGGCCTCAT+AGG | - | chr6.4:279603-279622 | None:intergenic | 50.0% | |
| GAAACCAATGCAGGAAAGGG+TGG | + | chr6.4:279704-279723 | MS.gene74436:CDS | 50.0% | |
| GACGACTTCTGAACTACTCC+CGG | - | chr6.4:279993-280012 | None:intergenic | 50.0% | |
| GCAAGAACTTCCGTCAATGC+TGG | - | chr6.4:280227-280246 | None:intergenic | 50.0% | |
| GCTTCCTGAGAAACCAATGC+AGG | + | chr6.4:279695-279714 | MS.gene74436:CDS | 50.0% | |
| GGCCTCATAGGTGGTTTCAA+AGG | - | chr6.4:279591-279610 | None:intergenic | 50.0% | |
| TCTCGAGTTTGAGTCTCGTG+TGG | + | chr6.4:279764-279783 | MS.gene74436:CDS | 50.0% | |
| TGCTCCAGAACTATAGGTGG+TGG | - | chr6.4:280434-280453 | None:intergenic | 50.0% | |
| ! | AAATCCACGAGCATCGTAGG+AGG | + | chr6.4:280618-280637 | MS.gene74436:CDS | 50.0% |
| ! | GGACTCTGAAGATAGTTGGG+AGG | + | chr6.4:279937-279956 | MS.gene74436:CDS | 50.0% |
| ! | TCCAGAACTATAGGTGGTGG+AGG | - | chr6.4:280431-280450 | None:intergenic | 50.0% |
| !! | CCAGAACTATAGGTGGTGGA+GGG | - | chr6.4:280430-280449 | None:intergenic | 50.0% |
| !! | GTTGGGAGGGTATTGGAAGA+CGG | + | chr6.4:279951-279970 | MS.gene74436:CDS | 50.0% |
| !!! | AAGGGTGGCTGCTATTTTGC+CGG | + | chr6.4:279719-279738 | MS.gene74436:CDS | 50.0% |
| AAACCACCTATGAGGCCGGT+TGG | + | chr6.4:279594-279613 | MS.gene74436:CDS | 55.0% | |
| AACTAACGCCTGCTGCTGCA+CGG | + | chr6.4:279658-279677 | MS.gene74436:CDS | 55.0% | |
| AATCCAACCGGCCTCATAGG+TGG | - | chr6.4:279600-279619 | None:intergenic | 55.0% | |
| AGGAGGCGGGCATTCTTTCT+TGG | + | chr6.4:280635-280654 | MS.gene74436:CDS | 55.0% | |
| AGGGATCTGAAAGCTGCAGC+TGG | + | chr6.4:280710-280729 | MS.gene74436:CDS | 55.0% | |
| ATCTTCAGAGTCCACGTCGG+AGG | - | chr6.4:279930-279949 | None:intergenic | 55.0% | |
| CATACAGGGTTGCCAGTTGC+AGG | - | chr6.4:281467-281486 | None:intergenic | 55.0% | |
| CCCTCCACCACCTATAGTTC+TGG | + | chr6.4:280427-280446 | MS.gene74436:CDS | 55.0% | |
| CGATCACCTGCTCCTCAAGA+AGG | + | chr6.4:280113-280132 | MS.gene74436:CDS | 55.0% | |
| CTGGCAACCCTGTATGACCA+TGG | + | chr6.4:281471-281490 | MS.gene74436:intron | 55.0% | |
| GAACTACTCCCGGCTGATCA+GGG | - | chr6.4:279983-280002 | None:intergenic | 55.0% | |
| GCAGCAGGCGTTAGTTCCAT+CGG | - | chr6.4:279654-279673 | None:intergenic | 55.0% | |
| TCGTAACAAGCACTCCCAGC+TGG | - | chr6.4:280482-280501 | None:intergenic | 55.0% | |
| TGAACTACTCCCGGCTGATC+AGG | - | chr6.4:279984-280003 | None:intergenic | 55.0% | |
| TTGAATCGCAAACCCGCTGC+AGG | + | chr6.4:281711-281730 | MS.gene74436:CDS | 55.0% | |
| TTTCTCGCCGTTGAGACCGA+TGG | + | chr6.4:279635-279654 | MS.gene74436:CDS | 55.0% | |
| ! | GGCTCGGCATTTGGCTTCTT+AGG | - | chr6.4:279909-279928 | None:intergenic | 55.0% |
| ! | TGGAGCATCACTTCCTGCAG+CGG | - | chr6.4:281727-281746 | None:intergenic | 55.0% |
| !! | GGTGGTGGAGGGAACAAATG+TGG | - | chr6.4:280419-280438 | None:intergenic | 55.0% |
| CGTTTCGCACTACCACTCCC+AGG | - | chr6.4:279564-279583 | None:intergenic | 60.0% | |
| GCAGCCACCCTTTCCTGCAT+TGG | - | chr6.4:279711-279730 | None:intergenic | 60.0% | |
| GCTGCAGGAAGTGATGCTCC+AGG | + | chr6.4:281726-281745 | MS.gene74436:CDS | 60.0% | |
| TTCTTCCTCCGTGCAGCAGC+AGG | - | chr6.4:279669-279688 | None:intergenic | 60.0% | |
| ! | GGAGCATCACTTCCTGCAGC+GGG | - | chr6.4:281726-281745 | None:intergenic | 60.0% |
| ! | GGGAGTGGTAGTGCGAAACG+TGG | + | chr6.4:279564-279583 | MS.gene74436:CDS | 60.0% |
| ! | TCCACGAGCATCGTAGGAGG+CGG | + | chr6.4:280621-280640 | MS.gene74436:CDS | 60.0% |
| CAAATGCCGAGCCTCCGACG+TGG | + | chr6.4:279916-279935 | MS.gene74436:CDS | 65.0% | |
| CACGTCGGAGGCTCGGCATT+TGG | - | chr6.4:279918-279937 | None:intergenic | 65.0% | |
| CAGAGTCCACGTCGGAGGCT+CGG | - | chr6.4:279925-279944 | None:intergenic | 65.0% | |
| TAACGCCTGCTGCTGCACGG+AGG | + | chr6.4:279661-279680 | MS.gene74436:CDS | 65.0% | |
| ! | CCACGAGCATCGTAGGAGGC+GGG | + | chr6.4:280622-280641 | MS.gene74436:CDS | 65.0% |
| !! | CGGCGTTGACCCTGATCAGC+CGG | + | chr6.4:279971-279990 | MS.gene74436:CDS | 65.0% |
| !! | GGCGTTGACCCTGATCAGCC+GGG | + | chr6.4:279972-279991 | MS.gene74436:CDS | 65.0% |
| CCCGCCTCCTACGATGCTCG+TGG | - | chr6.4:280625-280644 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 279552 | 281758 | 279552 | ID=MS.gene74436 |
| chr6.4 | mRNA | 279552 | 281758 | 279552 | ID=MS.gene74436.t1;Parent=MS.gene74436 |
| chr6.4 | exon | 279552 | 280789 | 279552 | ID=MS.gene74436.t1.exon1;Parent=MS.gene74436.t1 |
| chr6.4 | CDS | 279552 | 280789 | 279552 | ID=cds.MS.gene74436.t1;Parent=MS.gene74436.t1 |
| chr6.4 | exon | 281686 | 281758 | 281686 | ID=MS.gene74436.t1.exon2;Parent=MS.gene74436.t1 |
| chr6.4 | CDS | 281686 | 281758 | 281686 | ID=cds.MS.gene74436.t1;Parent=MS.gene74436.t1 |
| Gene Sequence |
| Protein sequence |
