AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074082

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074082.t1 MTR_6g023835 98.624 436 6 0 1 436 123 558 0.0 895
MS.gene074082.t1 MTR_4g103600 58.275 429 176 3 6 433 102 528 0.0 519
MS.gene074082.t1 MTR_3g089140 58.716 436 173 6 1 432 100 532 5.00e-180 513
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074082.t1 AT5G14170 78.440 436 92 2 1 435 99 533 0.0 710
MS.gene074082.t1 AT3G01890 70.258 427 105 7 6 429 51 458 0.0 581

Find 105 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCTTCAGAAAGTATT+TGG 0.145085 6.1:+7237812 MS.gene074082:CDS
TCTTAGGTATCGTGCGAATT+TGG 0.236171 6.1:-7237352 None:intergenic
TAGAAAGAAGGTTGATATTC+AGG 0.242285 6.1:+7237262 MS.gene074082:CDS
AGGAGGCGGGCATTCTTTCT+TGG 0.270814 6.1:+7238097 MS.gene074082:CDS
GGCTCGGCATTTGGCTTCTT+AGG 0.274246 6.1:-7237368 None:intergenic
TCTAGGTATCACGTGCTTCC+TGG 0.306640 6.1:-7239206 None:intergenic
CCCTCCACCACCTATAGTTC+TGG 0.307931 6.1:+7237889 MS.gene074082:CDS
AAGGGAGTTGTCTGCACTAT+TGG 0.318030 6.1:+7237994 MS.gene074082:CDS
AGCCTCTTCAGAAAGTATTT+GGG 0.344612 6.1:+7237813 MS.gene074082:CDS
CACGTCGGAGGCTCGGCATT+TGG 0.346531 6.1:-7237377 None:intergenic
CTTTCCTGCATTGGTTTCTC+AGG 0.350339 6.1:-7237161 None:intergenic
CAAGAATTATTGCTGCGATA+TGG 0.358007 6.1:+7237729 MS.gene074082:CDS
CATATCGCAGCAATAATTCT+TGG 0.368476 6.1:-7237728 None:intergenic
TGAACTACTCCCGGCTGGTC+AGG 0.371982 6.1:-7237443 None:intergenic
TTCTTCCTCCGTGCAGCAGC+AGG 0.379617 6.1:-7237128 None:intergenic
GAAGATAGTTGGGAGGGTAT+TGG 0.394511 6.1:+7237406 MS.gene074082:CDS
GAAAGTATTTGGGGAAGAAA+AGG 0.423540 6.1:+7237823 MS.gene074082:CDS
GCAGACAACTCCCTTTGAAT+AGG 0.427857 6.1:-7237986 None:intergenic
TTAAAGAAAGCCGAGAACTT+TGG 0.432630 6.1:-7237485 None:intergenic
GAAAATCCAACCGGCCTCAT+AGG 0.434394 6.1:-7237062 None:intergenic
TCGTCGTCGATGTCTACGCC+TGG 0.438452 6.1:+7237005 None:intergenic
GCAGCCACCCTTTCCTGCAT+TGG 0.440696 6.1:-7237170 None:intergenic
TGCGTATAAAGAGCAGATTC+CGG 0.443933 6.1:-7237200 None:intergenic
TCAAAACCTTCTTGAGGAGC+AGG 0.460085 6.1:-7237581 None:intergenic
ATCTGATGCTCCAGAACTAT+AGG 0.460674 6.1:-7237899 None:intergenic
ACCGATGTATCCAAAGTTCT+CGG 0.461991 6.1:+7237475 MS.gene074082:CDS
CCACACAATAGTGTTGTTCT+CGG 0.463598 6.1:-7237543 None:intergenic
AAGGCATTAATAAATTCTAC+TGG 0.468844 6.1:-7238133 None:intergenic
GGTGAAAGCTTAAACTTCTC+AGG 0.469046 6.1:-7237665 None:intergenic
CTATCGGGAAATAGTCCAGC+TGG 0.478886 6.1:+7237926 MS.gene074082:CDS
TGCTCAAAGCTTACCATGGT+TGG 0.480015 6.1:-7238243 None:intergenic
CGTGGACTCTGAAGATAGTT+GGG 0.481652 6.1:+7237396 MS.gene074082:CDS
TGGCGTTGACCCTGACCAGC+CGG 0.482269 6.1:+7237433 MS.gene074082:CDS
CGATCACCTGCTCCTCAAGA+AGG 0.484816 6.1:+7237575 MS.gene074082:CDS
TGCTGCACTTTCTAGAAAGA+AGG 0.485884 6.1:+7237250 MS.gene074082:CDS
AACTCCCTTTGAATAGGAAA+AGG 0.491119 6.1:-7237980 None:intergenic
TAAGCTTTCACCAGCATTGA+CGG 0.492158 6.1:+7237676 MS.gene074082:CDS
CTGAGAAACCAATGCAGGAA+AGG 0.496111 6.1:+7237162 MS.gene074082:CDS
ACGTGGACTCTGAAGATAGT+TGG 0.500504 6.1:+7237395 MS.gene074082:CDS
GGAGCATCACTTCCTGCAGC+GGG 0.501664 6.1:-7239185 None:intergenic
CAGAGTCCACGTCGGAGGCT+CGG 0.506975 6.1:-7237384 None:intergenic
GAACTACTCCCGGCTGGTCA+GGG 0.507033 6.1:-7237442 None:intergenic
CCTTGATTGAATCTCAAAGC+AGG 0.511145 6.1:+7238152 MS.gene074082:CDS
TTCTGAGGCGAAAATCCAAC+CGG 0.514583 6.1:-7237071 None:intergenic
AGGGATCTGAAAGCTGCAGC+TGG 0.516281 6.1:+7238172 MS.gene074082:CDS
TGAGAAACCAATGCAGGAAA+GGG 0.518820 6.1:+7237163 MS.gene074082:CDS
GTTGGGAGGGTATTGGAAGA+TGG 0.520571 6.1:+7237413 MS.gene074082:CDS
GTCCTTTGAAACCACCTATG+AGG 0.522585 6.1:+7237048 MS.gene074082:CDS
TCGTAACAAGCACTCCCAGC+TGG 0.524770 6.1:-7237941 None:intergenic
TTGAATCGCAAACCCGCTGC+AGG 0.527757 6.1:+7239173 MS.gene074082:CDS
GGAGCATCAGATCAAACTAT+CGG 0.529729 6.1:+7237910 MS.gene074082:CDS
GCAAGAACTTCCGTCAATGC+TGG 0.532598 6.1:-7237686 None:intergenic
AAACCACCTATGAGGCCGGT+TGG 0.533220 6.1:+7237056 MS.gene074082:CDS
TCCAGAACTATAGGTGGTGG+AGG 0.535658 6.1:-7237890 None:intergenic
TCCACGAGCATCGTAGGAGG+CGG 0.535807 6.1:+7238083 MS.gene074082:CDS
TCCCCAAATACTTTCTGAAG+AGG 0.537915 6.1:-7237815 None:intergenic
TGCTCCAGAACTATAGGTGG+TGG 0.541684 6.1:-7237893 None:intergenic
GGCGTTGACCCTGACCAGCC+GGG 0.545129 6.1:+7237434 MS.gene074082:CDS
TTTGAAACCACCTATGAGGC+CGG 0.549023 6.1:+7237052 MS.gene074082:CDS
GAGCATCAGATCAAACTATC+GGG 0.554086 6.1:+7237911 MS.gene074082:CDS
CACACAATAGTGTTGTTCTC+GGG 0.556965 6.1:-7237542 None:intergenic
CCTGCTTTGAGATTCAATCA+AGG 0.560426 6.1:-7238152 None:intergenic
TTTCTCACCGTTGAGACCGA+TGG 0.560848 6.1:+7237097 MS.gene074082:CDS
TGGAGCATCACTTCCTGCAG+CGG 0.562803 6.1:-7239186 None:intergenic
CCACGAGCATCGTAGGAGGC+GGG 0.563419 6.1:+7238084 MS.gene074082:CDS
TATGGCACTATGTGAAGGCT+AGG 0.572101 6.1:+7237747 MS.gene074082:CDS
TCGATGTCTACGCCTGGGAG+CGG 0.572497 6.1:+7237011 None:intergenic
TTCACTTCAAAACCTTCTTG+AGG 0.576166 6.1:-7237587 None:intergenic
CCCGCCTCCTACGATGCTCG+TGG 0.579778 6.1:-7238084 None:intergenic
AACTAACGCCTGCTGCTGCA+CGG 0.579865 6.1:+7237120 MS.gene074082:CDS
GCAGCAGGCGTTAGTTCCAT+CGG 0.581426 6.1:-7237113 None:intergenic
TCTCGAGTTTGAGTCTCGTG+TGG 0.582039 6.1:+7237226 MS.gene074082:CDS
TTGTTCTCGGGATATAGCCT+CGG 0.583394 6.1:-7237530 None:intergenic
CGTCGTCGATGTCTACGCCT+GGG 0.586905 6.1:+7237006 None:intergenic
GCTGCAGGAAGTGATGCTCC+AGG 0.587547 6.1:+7239188 MS.gene074082:CDS
GCCTCTTCAGAAAGTATTTG+GGG 0.589482 6.1:+7237814 MS.gene074082:CDS
GACGACTTCTGAACTACTCC+CGG 0.592418 6.1:-7237452 None:intergenic
GACTCTGAAGATAGTTGGGA+GGG 0.595717 6.1:+7237400 MS.gene074082:CDS
ACTTCTGAACTACTCCCGGC+TGG 0.597153 6.1:-7237448 None:intergenic
GGCCTCATAGGTGGTTTCAA+AGG 0.597547 6.1:-7237050 None:intergenic
AAATCCACGAGCATCGTAGG+AGG 0.600190 6.1:+7238080 MS.gene074082:CDS
GCTTCCTGAGAAACCAATGC+AGG 0.601644 6.1:+7237157 MS.gene074082:CDS
CCGAGAACAACACTATTGTG+TGG 0.601969 6.1:+7237543 MS.gene074082:CDS
GCCGAGAACTTTGGATACAT+CGG 0.603059 6.1:-7237476 None:intergenic
ACATGTGATGAAGCGATATG+TGG 0.611068 6.1:+7238046 MS.gene074082:CDS
CGTTTCGCACTACCGCTCCC+AGG 0.612556 6.1:-7237023 None:intergenic
AATCCAACCGGCCTCATAGG+TGG 0.616407 6.1:-7237059 None:intergenic
CGAGAACAACACTATTGTGT+GGG 0.622889 6.1:+7237544 MS.gene074082:CDS
CTTGATTGAATCTCAAAGCA+GGG 0.625702 6.1:+7238153 MS.gene074082:CDS
GAGTGCTTGTTACGATGCAA+TGG 0.627382 6.1:+7237949 MS.gene074082:CDS
GGTGGTGGAGGGAACAAATG+TGG 0.627777 6.1:-7237878 None:intergenic
GTTAGTTCCATCGGTCTCAA+CGG 0.632927 6.1:-7237104 None:intergenic
ATCTTCAGAGTCCACGTCGG+AGG 0.634474 6.1:-7237389 None:intergenic
TATCGGGAAATAGTCCAGCT+GGG 0.641484 6.1:+7237927 MS.gene074082:CDS
GAAACCAATGCAGGAAAGGG+TGG 0.642837 6.1:+7237166 MS.gene074082:CDS
TGCGATATGGCACTATGTGA+AGG 0.645164 6.1:+7237742 MS.gene074082:CDS
CCAGAACTATAGGTGGTGGA+GGG 0.655511 6.1:-7237889 None:intergenic
GGACTCTGAAGATAGTTGGG+AGG 0.655821 6.1:+7237399 MS.gene074082:CDS
TAATCATTACTCTGGATCCG+AGG 0.662346 6.1:+7237513 MS.gene074082:CDS
AACGGTGAGAAATTATTCTG+AGG 0.664992 6.1:-7237086 None:intergenic
TGATGCTCCAGAACTATAGG+TGG 0.665812 6.1:-7237896 None:intergenic
GGGAGCGGTAGTGCGAAACG+TGG 0.679453 6.1:+7237026 MS.gene074082:CDS
CAAATGCCGAGCCTCCGACG+TGG 0.704392 6.1:+7237378 MS.gene074082:CDS
TAACGCCTGCTGCTGCACGG+AGG 0.741030 6.1:+7237123 MS.gene074082:CDS
ACTATCTTCAGAGTCCACGT+CGG 0.774690 6.1:-7237392 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAACAATGG+AGG - chr6.1:7238290-7238309 None:intergenic 15.0%
!! ATTTCTCTTCTAAATTATAT+CGG - chr6.1:7238410-7238429 None:intergenic 15.0%
!! AACTTAGTATATATGTTAGT+TGG + chr6.1:7238709-7238728 MS.gene074082:intron 20.0%
!! TAAAAAAGTAATCATTACTC+TGG + chr6.1:7237505-7237524 MS.gene074082:CDS 20.0%
!! TGTCAAAAAGTTGTTAAAAA+AGG - chr6.1:7238446-7238465 None:intergenic 20.0%
!!! AATTAATTTGCAATCAAAGA+TGG - chr6.1:7238348-7238367 None:intergenic 20.0%
!!! TACAACTTTTATGACAATTT+TGG - chr6.1:7238557-7238576 None:intergenic 20.0%
!!! TATTATTTTTGACCAATCAA+AGG + chr6.1:7238523-7238542 MS.gene074082:intron 20.0%
!!! TCTGTATTTTCTATGTTTTA+TGG + chr6.1:7239048-7239067 MS.gene074082:intron 20.0%
!!! TTCAAATGTTTTAAAATGCA+TGG + chr6.1:7238972-7238991 MS.gene074082:intron 20.0%
! AACTAAGACAATATATGGAA+GGG - chr6.1:7238671-7238690 None:intergenic 25.0%
! ATATATTGTCTTAGTTGTTG+AGG + chr6.1:7238675-7238694 MS.gene074082:intron 25.0%
! TCAACAACTAAGACAATATA+TGG - chr6.1:7238676-7238695 None:intergenic 25.0%
! TTATTCTGCTATATGCTATT+TGG + chr6.1:7238831-7238850 MS.gene074082:intron 25.0%
!! AAGGCATTAATAAATTCTAC+TGG - chr6.1:7238136-7238155 None:intergenic 25.0%
!! ATATTCCTTTTCCTATTCAA+AGG + chr6.1:7237975-7237994 MS.gene074082:CDS 25.0%
!! TATTCCTTTTCCTATTCAAA+GGG + chr6.1:7237976-7237995 MS.gene074082:CDS 25.0%
!!! GATTCTAGTCTTATTTTAAC+TGG - chr6.1:7239022-7239041 None:intergenic 25.0%
AATGAAATCCTATCATACCA+TGG - chr6.1:7238953-7238972 None:intergenic 30.0%
ACTAAGACAATATATGGAAG+GGG - chr6.1:7238670-7238689 None:intergenic 30.0%
ATATATGTTAGTTGGACTGT+TGG + chr6.1:7238717-7238736 MS.gene074082:intron 30.0%
CAACTAAGACAATATATGGA+AGG - chr6.1:7238672-7238691 None:intergenic 30.0%
GATCACAGTGAAAAAAAGAA+GGG - chr6.1:7237793-7237812 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG - chr6.1:7238580-7238599 None:intergenic 30.0%
TCAAAGATGGTAGCAAATAA+AGG - chr6.1:7238335-7238354 None:intergenic 30.0%
TGATCACAGTGAAAAAAAGA+AGG - chr6.1:7237794-7237813 None:intergenic 30.0%
!! TAGAAAGAAGGTTGATATTC+AGG + chr6.1:7237262-7237281 MS.gene074082:CDS 30.0%
!!! TTCTTTTTTGAAATGGGGAA+GGG - chr6.1:7238645-7238664 None:intergenic 30.0%
AACGGTGAGAAATTATTCTG+AGG - chr6.1:7237089-7237108 None:intergenic 35.0%
AACTCCCTTTGAATAGGAAA+AGG - chr6.1:7237983-7238002 None:intergenic 35.0%
ATTGTTTGACAACATGAGCA+GGG + chr6.1:7239127-7239146 MS.gene074082:intron 35.0%
CAAGAATTATTGCTGCGATA+TGG + chr6.1:7237729-7237748 MS.gene074082:CDS 35.0%
CATATCGCAGCAATAATTCT+TGG - chr6.1:7237731-7237750 None:intergenic 35.0%
CCGATATTTGCCAATACTTT+GGG - chr6.1:7238857-7238876 None:intergenic 35.0%
CTTGATTGAATCTCAAAGCA+GGG + chr6.1:7238153-7238172 MS.gene074082:CDS 35.0%
GAAAAAAAGAAGGGTCGTTA+GGG - chr6.1:7237784-7237803 None:intergenic 35.0%
GAGTCAATCACAATCAATTC+CGG - chr6.1:7238383-7238402 None:intergenic 35.0%
TATCATACCATGGTCATACA+GGG - chr6.1:7238943-7238962 None:intergenic 35.0%
TATTGTTTGACAACATGAGC+AGG + chr6.1:7239126-7239145 MS.gene074082:intron 35.0%
TGAAAAAAAGAAGGGTCGTT+AGG - chr6.1:7237785-7237804 None:intergenic 35.0%
TTAAAGAAAGCCGAGAACTT+TGG - chr6.1:7237488-7237507 None:intergenic 35.0%
TTCACTTCAAAACCTTCTTG+AGG - chr6.1:7237590-7237609 None:intergenic 35.0%
TTGCAGGTCTTAGAAAATGA+TGG - chr6.1:7238913-7238932 None:intergenic 35.0%
! AGAGTTTTCTGAATACAAGG+CGG - chr6.1:7237302-7237321 None:intergenic 35.0%
! CGAAGAGTTTTCTGAATACA+AGG - chr6.1:7237305-7237324 None:intergenic 35.0%
! GAAAGGGGATAAAGAGTTTT+CGG + chr6.1:7237613-7237632 MS.gene074082:CDS 35.0%
!! AGCCTCTTCAGAAAGTATTT+GGG + chr6.1:7237813-7237832 MS.gene074082:CDS 35.0%
!! CCCAAAGTATTGGCAAATAT+CGG + chr6.1:7238854-7238873 MS.gene074082:intron 35.0%
!! GAAAGTATTTGGGGAAGAAA+AGG + chr6.1:7237823-7237842 MS.gene074082:CDS 35.0%
!! TTGGTTTTCTCTCCTTTGAT+TGG - chr6.1:7238538-7238557 None:intergenic 35.0%
!!! AAGAAGGTTTTGAAGTGAAG+AGG + chr6.1:7237591-7237610 MS.gene074082:CDS 35.0%
!!! AGGGGACTTCTTTTTTGAAA+TGG - chr6.1:7238652-7238671 None:intergenic 35.0%
!!! CAGATTTTTTCAACCAACCA+TGG + chr6.1:7238230-7238249 MS.gene074082:CDS 35.0%
!!! CTTCTTTTTTGAAATGGGGA+AGG - chr6.1:7238646-7238665 None:intergenic 35.0%
!!! GGGACTTCTTTTTTGAAATG+GGG - chr6.1:7238650-7238669 None:intergenic 35.0%
!!! GGGGACTTCTTTTTTGAAAT+GGG - chr6.1:7238651-7238670 None:intergenic 35.0%
!!! GTTTTGAAGTGAAGAGGAAA+GGG + chr6.1:7237597-7237616 MS.gene074082:CDS 35.0%
!!! TTTTGAAGTGAAGAGGAAAG+GGG + chr6.1:7237598-7237617 MS.gene074082:CDS 35.0%
ACATGTGATGAAGCGATATG+TGG + chr6.1:7238046-7238065 MS.gene074082:CDS 40.0%
ACCGATGTATCCAAAGTTCT+CGG + chr6.1:7237475-7237494 MS.gene074082:CDS 40.0%
ATAGTGCTCAAAGCTTACCA+TGG - chr6.1:7238250-7238269 None:intergenic 40.0%
ATCTGATGCTCCAGAACTAT+AGG - chr6.1:7237902-7237921 None:intergenic 40.0%
ATTAATTCACCATCGTCTGC+CGG + chr6.1:7238361-7238380 MS.gene074082:intron 40.0%
CCTTGATTGAATCTCAAAGC+AGG + chr6.1:7238152-7238171 MS.gene074082:CDS 40.0%
CGAGAACAACACTATTGTGT+GGG + chr6.1:7237544-7237563 MS.gene074082:CDS 40.0%
CTATCATACCATGGTCATAC+AGG - chr6.1:7238944-7238963 None:intergenic 40.0%
CTGTATGACCATGGTATGAT+AGG + chr6.1:7238942-7238961 MS.gene074082:intron 40.0%
GAGCATCAGATCAAACTATC+GGG + chr6.1:7237911-7237930 MS.gene074082:CDS 40.0%
GCCGATATTTGCCAATACTT+TGG - chr6.1:7238858-7238877 None:intergenic 40.0%
GCGCCATATGAGATGAAAAT+AGG - chr6.1:7238752-7238771 None:intergenic 40.0%
GGTGAAAGCTTAAACTTCTC+AGG - chr6.1:7237668-7237687 None:intergenic 40.0%
TAATCATTACTCTGGATCCG+AGG + chr6.1:7237513-7237532 MS.gene074082:CDS 40.0%
TGAGAAACCAATGCAGGAAA+GGG + chr6.1:7237163-7237182 MS.gene074082:CDS 40.0%
TGCGTATAAAGAGCAGATTC+CGG - chr6.1:7237203-7237222 None:intergenic 40.0%
! CACACAATAGTGTTGTTCTC+GGG - chr6.1:7237545-7237564 None:intergenic 40.0%
! CCACACAATAGTGTTGTTCT+CGG - chr6.1:7237546-7237565 None:intergenic 40.0%
! GCGCCTATTTTCATCTCATA+TGG + chr6.1:7238746-7238765 MS.gene074082:intron 40.0%
! GGAGCATCAGATCAAACTAT+CGG + chr6.1:7237910-7237929 MS.gene074082:CDS 40.0%
! TAAGCTTTCACCAGCATTGA+CGG + chr6.1:7237676-7237695 MS.gene074082:CDS 40.0%
! TCCCCAAATACTTTCTGAAG+AGG - chr6.1:7237818-7237837 None:intergenic 40.0%
! TCTTAGGTATCGTGCGAATT+TGG - chr6.1:7237355-7237374 None:intergenic 40.0%
! TGCTATTTGGCCCAAAGTAT+TGG + chr6.1:7238844-7238863 MS.gene074082:intron 40.0%
! TGCTGCACTTTCTAGAAAGA+AGG + chr6.1:7237250-7237269 MS.gene074082:CDS 40.0%
!! CAGCCTCTTCAGAAAGTATT+TGG + chr6.1:7237812-7237831 MS.gene074082:CDS 40.0%
!! CCTGCTTTGAGATTCAATCA+AGG - chr6.1:7238155-7238174 None:intergenic 40.0%
!! GCCTCTTCAGAAAGTATTTG+GGG + chr6.1:7237814-7237833 MS.gene074082:CDS 40.0%
!!! CATTTTCTAAGACCTGCAAC+TGG + chr6.1:7238914-7238933 MS.gene074082:intron 40.0%
!!! GGTTTTGAAGTGAAGAGGAA+AGG + chr6.1:7237596-7237615 MS.gene074082:CDS 40.0%
AAGGGAGTTGTCTGCACTAT+TGG + chr6.1:7237994-7238013 MS.gene074082:CDS 45.0%
ACTATCTTCAGAGTCCACGT+CGG - chr6.1:7237395-7237414 None:intergenic 45.0%
CCGAGAACAACACTATTGTG+TGG + chr6.1:7237543-7237562 MS.gene074082:CDS 45.0%
CTGAGAAACCAATGCAGGAA+AGG + chr6.1:7237162-7237181 MS.gene074082:CDS 45.0%
GCAGACAACTCCCTTTGAAT+AGG - chr6.1:7237989-7238008 None:intergenic 45.0%
GCCGAGAACTTTGGATACAT+CGG - chr6.1:7237479-7237498 None:intergenic 45.0%
GTTAGTTCCATCGGTCTCAA+CGG - chr6.1:7237107-7237126 None:intergenic 45.0%
TATCGGGAAATAGTCCAGCT+GGG + chr6.1:7237927-7237946 MS.gene074082:CDS 45.0%
TATGGCACTATGTGAAGGCT+AGG + chr6.1:7237747-7237766 MS.gene074082:CDS 45.0%
TCAAAACCTTCTTGAGGAGC+AGG - chr6.1:7237584-7237603 None:intergenic 45.0%
TGATGCTCCAGAACTATAGG+TGG - chr6.1:7237899-7237918 None:intergenic 45.0%
TGCGATATGGCACTATGTGA+AGG + chr6.1:7237742-7237761 MS.gene074082:CDS 45.0%
TGCTCAAAGCTTACCATGGT+TGG - chr6.1:7238246-7238265 None:intergenic 45.0%
TTGTTCTCGGGATATAGCCT+CGG - chr6.1:7237533-7237552 None:intergenic 45.0%
! ACGTGGACTCTGAAGATAGT+TGG + chr6.1:7237395-7237414 MS.gene074082:CDS 45.0%
! CGTGGACTCTGAAGATAGTT+GGG + chr6.1:7237396-7237415 MS.gene074082:CDS 45.0%
! GAAAAATCCACGAGCATCGT+AGG + chr6.1:7238077-7238096 MS.gene074082:CDS 45.0%
! GAAGATAGTTGGGAGGGTAT+TGG + chr6.1:7237406-7237425 MS.gene074082:CDS 45.0%
! GACTCTGAAGATAGTTGGGA+GGG + chr6.1:7237400-7237419 MS.gene074082:CDS 45.0%
! GAGTGCTTGTTACGATGCAA+TGG + chr6.1:7237949-7237968 MS.gene074082:CDS 45.0%
! TTTGAAACCACCTATGAGGC+CGG + chr6.1:7237052-7237071 MS.gene074082:CDS 45.0%
!! CTTTCCTGCATTGGTTTCTC+AGG - chr6.1:7237164-7237183 None:intergenic 45.0%
!! GTCCTTTGAAACCACCTATG+AGG + chr6.1:7237048-7237067 MS.gene074082:CDS 45.0%
!! TTCTGAGGCGAAAATCCAAC+CGG - chr6.1:7237074-7237093 None:intergenic 45.0%
!!! TCTTTTTCAGCACTGCGACT+AGG - chr6.1:7238202-7238221 None:intergenic 45.0%
!! TATAAAATAAAATAAAACAA+TGG - chr6.1:7238293-7238312 None:intergenic 5.0%
CAATCAATTCCGGCAGACGA+TGG - chr6.1:7238373-7238392 None:intergenic 50.0%
CTATCGGGAAATAGTCCAGC+TGG + chr6.1:7237926-7237945 MS.gene074082:CDS 50.0%
GAAAATCCAACCGGCCTCAT+AGG - chr6.1:7237065-7237084 None:intergenic 50.0%
GAAACCAATGCAGGAAAGGG+TGG + chr6.1:7237166-7237185 MS.gene074082:CDS 50.0%
GACGACTTCTGAACTACTCC+CGG - chr6.1:7237455-7237474 None:intergenic 50.0%
GCAAGAACTTCCGTCAATGC+TGG - chr6.1:7237689-7237708 None:intergenic 50.0%
GCTTCCTGAGAAACCAATGC+AGG + chr6.1:7237157-7237176 MS.gene074082:CDS 50.0%
GGCCTCATAGGTGGTTTCAA+AGG - chr6.1:7237053-7237072 None:intergenic 50.0%
TCTCGAGTTTGAGTCTCGTG+TGG + chr6.1:7237226-7237245 MS.gene074082:CDS 50.0%
TGCTCCAGAACTATAGGTGG+TGG - chr6.1:7237896-7237915 None:intergenic 50.0%
TTTCTCACCGTTGAGACCGA+TGG + chr6.1:7237097-7237116 MS.gene074082:CDS 50.0%
! AAATCCACGAGCATCGTAGG+AGG + chr6.1:7238080-7238099 MS.gene074082:CDS 50.0%
! GGACTCTGAAGATAGTTGGG+AGG + chr6.1:7237399-7237418 MS.gene074082:CDS 50.0%
! TCCAGAACTATAGGTGGTGG+AGG - chr6.1:7237893-7237912 None:intergenic 50.0%
!! CCAGAACTATAGGTGGTGGA+GGG - chr6.1:7237892-7237911 None:intergenic 50.0%
!! GTTGGGAGGGTATTGGAAGA+TGG + chr6.1:7237413-7237432 MS.gene074082:CDS 50.0%
!!! AAGGGTGGCTGCTATTTTGC+CGG + chr6.1:7237181-7237200 MS.gene074082:CDS 50.0%
AAACCACCTATGAGGCCGGT+TGG + chr6.1:7237056-7237075 MS.gene074082:CDS 55.0%
AACTAACGCCTGCTGCTGCA+CGG + chr6.1:7237120-7237139 MS.gene074082:CDS 55.0%
AATCCAACCGGCCTCATAGG+TGG - chr6.1:7237062-7237081 None:intergenic 55.0%
ACTTCTGAACTACTCCCGGC+TGG - chr6.1:7237451-7237470 None:intergenic 55.0%
AGGAGGCGGGCATTCTTTCT+TGG + chr6.1:7238097-7238116 MS.gene074082:CDS 55.0%
AGGGATCTGAAAGCTGCAGC+TGG + chr6.1:7238172-7238191 MS.gene074082:CDS 55.0%
ATCTTCAGAGTCCACGTCGG+AGG - chr6.1:7237392-7237411 None:intergenic 55.0%
CATACAGGGTTGCCAGTTGC+AGG - chr6.1:7238929-7238948 None:intergenic 55.0%
CCCTCCACCACCTATAGTTC+TGG + chr6.1:7237889-7237908 MS.gene074082:CDS 55.0%
CGATCACCTGCTCCTCAAGA+AGG + chr6.1:7237575-7237594 MS.gene074082:CDS 55.0%
CTGGCAACCCTGTATGACCA+TGG + chr6.1:7238933-7238952 MS.gene074082:intron 55.0%
GCAGCAGGCGTTAGTTCCAT+CGG - chr6.1:7237116-7237135 None:intergenic 55.0%
TCGTAACAAGCACTCCCAGC+TGG - chr6.1:7237944-7237963 None:intergenic 55.0%
TTGAATCGCAAACCCGCTGC+AGG + chr6.1:7239173-7239192 MS.gene074082:CDS 55.0%
! GGCTCGGCATTTGGCTTCTT+AGG - chr6.1:7237371-7237390 None:intergenic 55.0%
! TGGAGCATCACTTCCTGCAG+CGG - chr6.1:7239189-7239208 None:intergenic 55.0%
!! GGTGGTGGAGGGAACAAATG+TGG - chr6.1:7237881-7237900 None:intergenic 55.0%
GCAGCCACCCTTTCCTGCAT+TGG - chr6.1:7237173-7237192 None:intergenic 60.0%
GCTGCAGGAAGTGATGCTCC+AGG + chr6.1:7239188-7239207 MS.gene074082:CDS 60.0%
TTCTTCCTCCGTGCAGCAGC+AGG - chr6.1:7237131-7237150 None:intergenic 60.0%
! GAACTACTCCCGGCTGGTCA+GGG - chr6.1:7237445-7237464 None:intergenic 60.0%
! GGAGCATCACTTCCTGCAGC+GGG - chr6.1:7239188-7239207 None:intergenic 60.0%
! TCCACGAGCATCGTAGGAGG+CGG + chr6.1:7238083-7238102 MS.gene074082:CDS 60.0%
! TGAACTACTCCCGGCTGGTC+AGG - chr6.1:7237446-7237465 None:intergenic 60.0%
CAAATGCCGAGCCTCCGACG+TGG + chr6.1:7237378-7237397 MS.gene074082:CDS 65.0%
CACGTCGGAGGCTCGGCATT+TGG - chr6.1:7237380-7237399 None:intergenic 65.0%
CAGAGTCCACGTCGGAGGCT+CGG - chr6.1:7237387-7237406 None:intergenic 65.0%
CGTTTCGCACTACCGCTCCC+AGG - chr6.1:7237026-7237045 None:intergenic 65.0%
GGGAGCGGTAGTGCGAAACG+TGG + chr6.1:7237026-7237045 MS.gene074082:CDS 65.0%
TAACGCCTGCTGCTGCACGG+AGG + chr6.1:7237123-7237142 MS.gene074082:CDS 65.0%
! CCACGAGCATCGTAGGAGGC+GGG + chr6.1:7238084-7238103 MS.gene074082:CDS 65.0%
!! TGGCGTTGACCCTGACCAGC+CGG + chr6.1:7237433-7237452 MS.gene074082:CDS 65.0%
CCCGCCTCCTACGATGCTCG+TGG - chr6.1:7238087-7238106 None:intergenic 70.0%
!! GGCGTTGACCCTGACCAGCC+GGG + chr6.1:7237434-7237453 MS.gene074082:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 7237014 7239220 7237014 ID=MS.gene074082
chr6.1 mRNA 7237014 7239220 7237014 ID=MS.gene074082.t1;Parent=MS.gene074082
chr6.1 exon 7237014 7238251 7237014 ID=MS.gene074082.t1.exon1;Parent=MS.gene074082.t1
chr6.1 CDS 7237014 7238251 7237014 ID=cds.MS.gene074082.t1;Parent=MS.gene074082.t1
chr6.1 exon 7239148 7239220 7239148 ID=MS.gene074082.t1.exon2;Parent=MS.gene074082.t1
chr6.1 CDS 7239148 7239220 7239148 ID=cds.MS.gene074082.t1;Parent=MS.gene074082.t1
Gene Sequence

>MS.gene074082

ATGTCTACGCCTGGGAGCGGTAGTGCGAAACGTGGTCCTTTGAAACCACCTATGAGGCCGGTTGGATTTTCGCCTCAGAATAATTTCTCACCGTTGAGACCGATGGAACTAACGCCTGCTGCTGCACGGAGGAAGAAGCAGAAGCTTCCTGAGAAACCAATGCAGGAAAGGGTGGCTGCTATTTTGCCGGAATCTGCTCTTTATACGCAGCTTCTCGAGTTTGAGTCTCGTGTGGATGCTGCACTTTCTAGAAAGAAGGTTGATATTCAGGAAGCGCTGAAAAATCCGCCTTGTATTCAGAAAACTCTTCGTATTTATGTATTTAACACTTTTGCAAACCAAATTCGCACGATACCTAAGAAGCCAAATGCCGAGCCTCCGACGTGGACTCTGAAGATAGTTGGGAGGGTATTGGAAGATGGCGTTGACCCTGACCAGCCGGGAGTAGTTCAGAAGTCGTCACCGATGTATCCAAAGTTCTCGGCTTTCTTTAAAAAAGTAATCATTACTCTGGATCCGAGGCTATATCCCGAGAACAACACTATTGTGTGGGATAGTTATCGATCACCTGCTCCTCAAGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAGTTTTCGGTGAATATACAGTTTTATATGAATTATGCACCTGAGAAGTTTAAGCTTTCACCAGCATTGACGGAAGTTCTTGCTATCGACGTTGATACTCGTCCAAGAATTATTGCTGCGATATGGCACTATGTGAAGGCTAGGAAACTACAGAACCCTAACGACCCTTCTTTTTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGGGAAGAAAAGGTGAAGTTCACAACAGTTTCGCAGAAAATATCGCCACATTTGTTCCCTCCACCACCTATAGTTCTGGAGCATCAGATCAAACTATCGGGAAATAGTCCAGCTGGGAGTGCTTGTTACGATGCAATGGTTGATATTCCTTTTCCTATTCAAAGGGAGTTGTCTGCACTATTGGCAAATGTCGAGAAGAACAAAGAGATTGAAACATGTGATGAAGCGATATGTGGAATCATTAGAAAAATCCACGAGCATCGTAGGAGGCGGGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAGCTGCAGCTGGAGAACCTAGTCGCAGTGCTGAAAAAGAGCGTCGAGCAGATTTTTTCAACCAACCATGGTAAGCTTTGAGCACTATCTCTGCTCATTTTCTGTCCTCCATTGTTTTATTTTATTTTATATTTTGTTTTTTGCTTGTCTCCTTTATTTGCTACCATCTTTGATTGCAAATTAATTCACCATCGTCTGCCGGAATTGATTGTGATTGACTCGAATCCGATATAATTTAGAAGAGAAATGATATTTGTACAACCTTTTTTAACAACTTTTTGACAACTTTCTCTCTCATACTCACATTATCTTCTTATTCTCTCTCTTTCTTTTTCTCTCTCTATTATTTTTGACCAATCAAAGGAGAGAAAACCAAAATTGTCATAAAAGTTGTACCAAAGAGTTGTACAAATATCACTACTCAATTTAGAATTGTCATTATACTTCTGTGATTAATAGTCCCTTCCCCATTTCAAAAAAGAAGTCCCCTTCCATATATTGTCTTAGTTGTTGAGGATTTATATATAAACTTAGTATATATGTTAGTTGGACTGTTGGATTTATGCGCCTATTTTCATCTCATATGGCGCAATGTTGTCAAATAGCGTACTATGCTGTTATAGCATAGCATAATTTGAACAAATCATGATTATTCTGCTATATGCTATTTGGCCCAAAGTATTGGCAAATATCGGCGCTGTAGTGTAGTGTAGCAGATTTTTAACAAACCATCATTTTCTAAGACCTGCAACTGGCAACCCTGTATGACCATGGTATGATAGGATTTCATTTCAAATGTTTTAAAATGCATGGTTTTTTTCTTCTTCTGTGCACAATCCAGTTAAAATAAGACTAGAATCAATGTGTCTGTATTTTCTATGTTTTATGGATACATTTTACTATTAAGTATTAACTATATCAATTATCATTCACTGAAATTCATATATTGTTTGACAACATGAGCAGGGTTGAAGATGCTGTTATTCGATACTTGAATCGCAAACCCGCTGCAGGAAGTGATGCTCCAGGAAGCACGTGA
Protein sequence

>MS.gene074082.t1

MSTPGSGSAKRGPLKPPMRPVGFSPQNNFSPLRPMELTPAAARRKKQKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKKVIITLDPRLYPENNTIVWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKVKFTTVSQKISPHLFPPPPIVLEHQIKLSGNSPAGSACYDAMVDIPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRYLNRKPAAGSDAPGST