AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene55513

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55513.t1 MTR_6g023835 98.624 436 6 0 1 436 123 558 0.0 895
MS.gene55513.t1 MTR_4g103600 58.275 429 176 3 6 433 102 528 0.0 519
MS.gene55513.t1 MTR_3g089140 58.716 436 173 6 1 432 100 532 5.00e-180 513
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene55513.t1 AT5G14170 78.440 436 92 2 1 435 99 533 0.0 710
MS.gene55513.t1 AT3G01890 70.258 427 105 7 6 429 51 458 0.0 581

Find 104 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTCTTCAGAAAGTATT+TGG 0.145085 6.2:+17145881 MS.gene55513:CDS
TCTTAGGTATCGTGCGAATT+TGG 0.236171 6.2:-17145421 None:intergenic
TAGAAAGAAGGTTGATATTC+AGG 0.242285 6.2:+17145331 MS.gene55513:CDS
AGGAGGCGGGCATTCTTTCT+TGG 0.270814 6.2:+17146166 MS.gene55513:CDS
GGCTCGGCATTTGGCTTCTT+AGG 0.274246 6.2:-17145437 None:intergenic
TCTAGGTATCACGTGCTTCC+TGG 0.306640 6.2:-17147271 None:intergenic
CCCTCCACCACCTATAGTTC+TGG 0.307931 6.2:+17145958 MS.gene55513:CDS
AAGGGAGTTGTCTGCACTAT+TGG 0.318030 6.2:+17146063 MS.gene55513:CDS
AGCCTCTTCAGAAAGTATTT+GGG 0.344612 6.2:+17145882 MS.gene55513:CDS
CACGTCGGAGGCTCGGCATT+TGG 0.346531 6.2:-17145446 None:intergenic
CTTTCCTGCATTGGTTTCTC+AGG 0.350339 6.2:-17145230 None:intergenic
CAAGAATTATTGCTGCGATA+TGG 0.358007 6.2:+17145798 MS.gene55513:CDS
TGAACTACTCCCGGCTGATC+AGG 0.367241 6.2:-17145512 None:intergenic
CATATCGCAGCAATAATTCT+TGG 0.368476 6.2:-17145797 None:intergenic
TTCTTCCTCCGTGCAGCAGC+AGG 0.379617 6.2:-17145197 None:intergenic
GAAGATAGTTGGGAGGGTAT+TGG 0.394511 6.2:+17145475 MS.gene55513:CDS
TCGTCGTCTATGTCTACGCC+TGG 0.404173 6.2:+17145074 None:intergenic
GAAAGTATTTGGGGAAGAAA+AGG 0.423540 6.2:+17145892 MS.gene55513:CDS
GCAGACAACTCCCTTTGAAT+AGG 0.427857 6.2:-17146055 None:intergenic
TTAAAGAAAGCCGAGAACTT+TGG 0.432630 6.2:-17145554 None:intergenic
GAAAATCCAACCGGCCTCAT+AGG 0.434394 6.2:-17145131 None:intergenic
GCAGCCACCCTTTCCTGCAT+TGG 0.440696 6.2:-17145239 None:intergenic
TGCGTATAAAGAGCAGATTC+CGG 0.443933 6.2:-17145269 None:intergenic
TCAAAACCTTCTTGAGGAGC+AGG 0.460085 6.2:-17145650 None:intergenic
ATCTGATGCTCCAGAACTAT+AGG 0.460674 6.2:-17145968 None:intergenic
ACCGATGTATCCAAAGTTCT+CGG 0.461991 6.2:+17145544 MS.gene55513:CDS
CCACACAATAGTGTTGTTCT+CGG 0.463598 6.2:-17145612 None:intergenic
AAGGCATTAATAAATTCTAC+TGG 0.468844 6.2:-17146202 None:intergenic
GGTGAAAGCTTAAACTTCTC+AGG 0.469046 6.2:-17145734 None:intergenic
CTATCGGGAAATAGTCCAGC+TGG 0.478886 6.2:+17145995 MS.gene55513:CDS
TGCTCAAAGCTTACCATGGT+TGG 0.480015 6.2:-17146312 None:intergenic
TGGCGTTGACCCTGATCAGC+CGG 0.481582 6.2:+17145502 MS.gene55513:CDS
CGTGGACTCTGAAGATAGTT+GGG 0.481652 6.2:+17145465 MS.gene55513:CDS
CGATCACCTGCTCCTCAAGA+AGG 0.484816 6.2:+17145644 MS.gene55513:CDS
TGCTGCACTTTCTAGAAAGA+AGG 0.485884 6.2:+17145319 MS.gene55513:CDS
AACTCCCTTTGAATAGGAAA+AGG 0.491119 6.2:-17146049 None:intergenic
TAAGCTTTCACCAGCATTGA+CGG 0.492158 6.2:+17145745 MS.gene55513:CDS
CTGAGAAACCAATGCAGGAA+AGG 0.496111 6.2:+17145231 MS.gene55513:CDS
ACGTGGACTCTGAAGATAGT+TGG 0.500504 6.2:+17145464 MS.gene55513:CDS
GGAGCATCACTTCCTGCAGC+GGG 0.501664 6.2:-17147250 None:intergenic
CAGAGTCCACGTCGGAGGCT+CGG 0.506975 6.2:-17145453 None:intergenic
CCTTGATTGAATCTCAAAGC+AGG 0.511145 6.2:+17146221 MS.gene55513:CDS
TTCTGAGGCGAAAATCCAAC+CGG 0.514583 6.2:-17145140 None:intergenic
AGGGATCTGAAAGCTGCAGC+TGG 0.516281 6.2:+17146241 MS.gene55513:CDS
TGAGAAACCAATGCAGGAAA+GGG 0.518820 6.2:+17145232 MS.gene55513:CDS
GTTGGGAGGGTATTGGAAGA+TGG 0.520571 6.2:+17145482 MS.gene55513:CDS
GTCCTTTGAAACCACCTATG+AGG 0.522585 6.2:+17145117 MS.gene55513:CDS
TCGTAACAAGCACTCCCAGC+TGG 0.524770 6.2:-17146010 None:intergenic
TTGAATCGCAAACCCGCTGC+AGG 0.527757 6.2:+17147238 MS.gene55513:CDS
GGAGCATCAGATCAAACTAT+CGG 0.529729 6.2:+17145979 MS.gene55513:CDS
GCAAGAACTTCCGTCAATGC+TGG 0.532598 6.2:-17145755 None:intergenic
AAACCACCTATGAGGCCGGT+TGG 0.533220 6.2:+17145125 MS.gene55513:CDS
TCCAGAACTATAGGTGGTGG+AGG 0.535658 6.2:-17145959 None:intergenic
TCCACGAGCATCGTAGGAGG+CGG 0.535807 6.2:+17146152 MS.gene55513:CDS
TCCCCAAATACTTTCTGAAG+AGG 0.537915 6.2:-17145884 None:intergenic
TGCTCCAGAACTATAGGTGG+TGG 0.541684 6.2:-17145962 None:intergenic
TTTGAAACCACCTATGAGGC+CGG 0.549023 6.2:+17145121 MS.gene55513:CDS
GGCGTTGACCCTGATCAGCC+GGG 0.550072 6.2:+17145503 MS.gene55513:CDS
GAGCATCAGATCAAACTATC+GGG 0.554086 6.2:+17145980 MS.gene55513:CDS
CACACAATAGTGTTGTTCTC+GGG 0.556965 6.2:-17145611 None:intergenic
CCTGCTTTGAGATTCAATCA+AGG 0.560426 6.2:-17146221 None:intergenic
TTTCTCACCGTTGAGACCGA+TGG 0.560848 6.2:+17145166 MS.gene55513:CDS
TGGAGCATCACTTCCTGCAG+CGG 0.562803 6.2:-17147251 None:intergenic
CCACGAGCATCGTAGGAGGC+GGG 0.563419 6.2:+17146153 MS.gene55513:CDS
GAACTACTCCCGGCTGATCA+GGG 0.569681 6.2:-17145511 None:intergenic
TATGGCACTATGTGAAGGCT+AGG 0.572101 6.2:+17145816 MS.gene55513:CDS
TTCACTTCAAAACCTTCTTG+AGG 0.576166 6.2:-17145656 None:intergenic
CCCGCCTCCTACGATGCTCG+TGG 0.579778 6.2:-17146153 None:intergenic
AACTAACGCCTGCTGCTGCA+CGG 0.579865 6.2:+17145189 MS.gene55513:CDS
GCAGCAGGCGTTAGTTCCAT+CGG 0.581426 6.2:-17145182 None:intergenic
TCTCGAGTTTGAGTCTCGTG+TGG 0.582039 6.2:+17145295 MS.gene55513:CDS
TTGTTCTCGGGATATAGCCT+CGG 0.583394 6.2:-17145599 None:intergenic
GCTGCAGGAAGTGATGCTCC+AGG 0.587547 6.2:+17147253 MS.gene55513:CDS
CGTCGTCTATGTCTACGCCT+GGG 0.588174 6.2:+17145075 None:intergenic
GCCTCTTCAGAAAGTATTTG+GGG 0.589482 6.2:+17145883 MS.gene55513:CDS
GACGACTTCTGAACTACTCC+CGG 0.592418 6.2:-17145521 None:intergenic
GACTCTGAAGATAGTTGGGA+GGG 0.595717 6.2:+17145469 MS.gene55513:CDS
GGCCTCATAGGTGGTTTCAA+AGG 0.597547 6.2:-17145119 None:intergenic
TAATCATTACTTTGGATCCG+AGG 0.599509 6.2:+17145582 MS.gene55513:CDS
AAATCCACGAGCATCGTAGG+AGG 0.600190 6.2:+17146149 MS.gene55513:CDS
GCTTCCTGAGAAACCAATGC+AGG 0.601644 6.2:+17145226 MS.gene55513:CDS
CCGAGAACAACACTATTGTG+TGG 0.601969 6.2:+17145612 MS.gene55513:CDS
GCCGAGAACTTTGGATACAT+CGG 0.603059 6.2:-17145545 None:intergenic
ACATGTGATGAAGCGATATG+TGG 0.611068 6.2:+17146115 MS.gene55513:CDS
CGTTTCGCACTACCGCTCCC+AGG 0.612556 6.2:-17145092 None:intergenic
AATCCAACCGGCCTCATAGG+TGG 0.616407 6.2:-17145128 None:intergenic
CGAGAACAACACTATTGTGT+GGG 0.622889 6.2:+17145613 MS.gene55513:CDS
CTTGATTGAATCTCAAAGCA+GGG 0.625702 6.2:+17146222 MS.gene55513:CDS
GAGTGCTTGTTACGATGCAA+TGG 0.627382 6.2:+17146018 MS.gene55513:CDS
GGTGGTGGAGGGAACAAATG+TGG 0.627777 6.2:-17145947 None:intergenic
GTTAGTTCCATCGGTCTCAA+CGG 0.632927 6.2:-17145173 None:intergenic
ATCTTCAGAGTCCACGTCGG+AGG 0.634474 6.2:-17145458 None:intergenic
TCTATGTCTACGCCTGGGAG+CGG 0.636904 6.2:+17145080 None:intergenic
TATCGGGAAATAGTCCAGCT+GGG 0.641484 6.2:+17145996 MS.gene55513:CDS
GAAACCAATGCAGGAAAGGG+TGG 0.642837 6.2:+17145235 MS.gene55513:CDS
TGCGATATGGCACTATGTGA+AGG 0.645164 6.2:+17145811 MS.gene55513:CDS
CCAGAACTATAGGTGGTGGA+GGG 0.655511 6.2:-17145958 None:intergenic
GGACTCTGAAGATAGTTGGG+AGG 0.655821 6.2:+17145468 MS.gene55513:CDS
AACGGTGAGAAATTATTCTG+AGG 0.664992 6.2:-17145155 None:intergenic
TGATGCTCCAGAACTATAGG+TGG 0.665812 6.2:-17145965 None:intergenic
GGGAGCGGTAGTGCGAAACG+TGG 0.679453 6.2:+17145095 MS.gene55513:CDS
CAAATGCCGAGCCTCCGACG+TGG 0.704392 6.2:+17145447 MS.gene55513:CDS
TAACGCCTGCTGCTGCACGG+AGG 0.741030 6.2:+17145192 MS.gene55513:CDS
ACTATCTTCAGAGTCCACGT+CGG 0.774690 6.2:-17145461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAAAACAATGG+AGG - chr6.2:17146359-17146378 None:intergenic 15.0%
!! TAAAAAAGTAATCATTACTT+TGG + chr6.2:17145574-17145593 MS.gene55513:CDS 15.0%
!! AACTTAGTATATATGTTAGT+TGG + chr6.2:17146774-17146793 MS.gene55513:intron 20.0%
!! TGTCAAAAAGTTGTTAAAAA+AGG - chr6.2:17146515-17146534 None:intergenic 20.0%
!!! AATTAATTTGCAATCAAAGA+TGG - chr6.2:17146417-17146436 None:intergenic 20.0%
!!! TACAACTTTTATGACAATTT+TGG - chr6.2:17146622-17146641 None:intergenic 20.0%
!!! TATTATTTTTGACCAATCAA+AGG + chr6.2:17146588-17146607 MS.gene55513:intron 20.0%
!!! TCTGTATTTTCTATGTTTTA+TGG + chr6.2:17147113-17147132 MS.gene55513:intron 20.0%
!!! TTCAAATGTTTTAAAATGCA+TGG + chr6.2:17147037-17147056 MS.gene55513:intron 20.0%
! AACTAAGACAATATATGGAA+GGG - chr6.2:17146736-17146755 None:intergenic 25.0%
! ATATATTGTCTTAGTTGTTG+AGG + chr6.2:17146740-17146759 MS.gene55513:intron 25.0%
! TCAACAACTAAGACAATATA+TGG - chr6.2:17146741-17146760 None:intergenic 25.0%
! TTATTCTGCTATATGCTATT+TGG + chr6.2:17146896-17146915 MS.gene55513:intron 25.0%
!! AAGGCATTAATAAATTCTAC+TGG - chr6.2:17146205-17146224 None:intergenic 25.0%
!! ATATTCCTTTTCCTATTCAA+AGG + chr6.2:17146044-17146063 MS.gene55513:CDS 25.0%
!! TATTCCTTTTCCTATTCAAA+GGG + chr6.2:17146045-17146064 MS.gene55513:CDS 25.0%
!!! GATTCTAGTCTTATTTTAAC+TGG - chr6.2:17147087-17147106 None:intergenic 25.0%
AATGAAATCCTATCATACCA+TGG - chr6.2:17147018-17147037 None:intergenic 30.0%
ACTAAGACAATATATGGAAG+GGG - chr6.2:17146735-17146754 None:intergenic 30.0%
ATATATGTTAGTTGGACTGT+TGG + chr6.2:17146782-17146801 MS.gene55513:intron 30.0%
CAACTAAGACAATATATGGA+AGG - chr6.2:17146737-17146756 None:intergenic 30.0%
GATCACAGTGAAAAAAAGAA+GGG - chr6.2:17145862-17145881 None:intergenic 30.0%
GTGATATTTGTACAACTCTT+TGG - chr6.2:17146645-17146664 None:intergenic 30.0%
TCAAAGATGGTAGCAAATAA+AGG - chr6.2:17146404-17146423 None:intergenic 30.0%
TGATCACAGTGAAAAAAAGA+AGG - chr6.2:17145863-17145882 None:intergenic 30.0%
!! CACAAAGTATTGGCAAATAT+CGG + chr6.2:17146919-17146938 MS.gene55513:intron 30.0%
!! TAGAAAGAAGGTTGATATTC+AGG + chr6.2:17145331-17145350 MS.gene55513:CDS 30.0%
!!! TTCTTTTTTGAAATGGGGAA+GGG - chr6.2:17146710-17146729 None:intergenic 30.0%
AACGGTGAGAAATTATTCTG+AGG - chr6.2:17145158-17145177 None:intergenic 35.0%
AACTCCCTTTGAATAGGAAA+AGG - chr6.2:17146052-17146071 None:intergenic 35.0%
ATTGTTTGACAACATGAGCA+GGG + chr6.2:17147192-17147211 MS.gene55513:intron 35.0%
CAAGAATTATTGCTGCGATA+TGG + chr6.2:17145798-17145817 MS.gene55513:CDS 35.0%
CATATCGCAGCAATAATTCT+TGG - chr6.2:17145800-17145819 None:intergenic 35.0%
CTTGATTGAATCTCAAAGCA+GGG + chr6.2:17146222-17146241 MS.gene55513:CDS 35.0%
GAAAAAAAGAAGGGTCGTTA+GGG - chr6.2:17145853-17145872 None:intergenic 35.0%
GAGTCAATCACAATCAATTC+CGG - chr6.2:17146452-17146471 None:intergenic 35.0%
TAATCATTACTTTGGATCCG+AGG + chr6.2:17145582-17145601 MS.gene55513:CDS 35.0%
TATCATACCATGGTCATACA+GGG - chr6.2:17147008-17147027 None:intergenic 35.0%
TATTGTTTGACAACATGAGC+AGG + chr6.2:17147191-17147210 MS.gene55513:intron 35.0%
TGAAAAAAAGAAGGGTCGTT+AGG - chr6.2:17145854-17145873 None:intergenic 35.0%
TTAAAGAAAGCCGAGAACTT+TGG - chr6.2:17145557-17145576 None:intergenic 35.0%
TTCACTTCAAAACCTTCTTG+AGG - chr6.2:17145659-17145678 None:intergenic 35.0%
TTGCAGGTCTTAGAAAATGA+TGG - chr6.2:17146978-17146997 None:intergenic 35.0%
! AGAGTTTTCTGAATACAAGG+CGG - chr6.2:17145371-17145390 None:intergenic 35.0%
! CGAAGAGTTTTCTGAATACA+AGG - chr6.2:17145374-17145393 None:intergenic 35.0%
! GAAAGGGGATAAAGAGTTTT+CGG + chr6.2:17145682-17145701 MS.gene55513:CDS 35.0%
! TGCTATTTGGCACAAAGTAT+TGG + chr6.2:17146909-17146928 MS.gene55513:intron 35.0%
!! AGCCTCTTCAGAAAGTATTT+GGG + chr6.2:17145882-17145901 MS.gene55513:CDS 35.0%
!! GAAAGTATTTGGGGAAGAAA+AGG + chr6.2:17145892-17145911 MS.gene55513:CDS 35.0%
!! TTGGTTTTCTCTCCTTTGAT+TGG - chr6.2:17146603-17146622 None:intergenic 35.0%
!!! AAGAAGGTTTTGAAGTGAAG+AGG + chr6.2:17145660-17145679 MS.gene55513:CDS 35.0%
!!! AGGGGACTTCTTTTTTGAAA+TGG - chr6.2:17146717-17146736 None:intergenic 35.0%
!!! CAGATTTTTTCAACCAACCA+TGG + chr6.2:17146299-17146318 MS.gene55513:CDS 35.0%
!!! CTTCTTTTTTGAAATGGGGA+AGG - chr6.2:17146711-17146730 None:intergenic 35.0%
!!! GGGACTTCTTTTTTGAAATG+GGG - chr6.2:17146715-17146734 None:intergenic 35.0%
!!! GGGGACTTCTTTTTTGAAAT+GGG - chr6.2:17146716-17146735 None:intergenic 35.0%
!!! GTTTTGAAGTGAAGAGGAAA+GGG + chr6.2:17145666-17145685 MS.gene55513:CDS 35.0%
!!! TTTTGAAGTGAAGAGGAAAG+GGG + chr6.2:17145667-17145686 MS.gene55513:CDS 35.0%
ACATGTGATGAAGCGATATG+TGG + chr6.2:17146115-17146134 MS.gene55513:CDS 40.0%
ACCGATGTATCCAAAGTTCT+CGG + chr6.2:17145544-17145563 MS.gene55513:CDS 40.0%
ATAGTGCTCAAAGCTTACCA+TGG - chr6.2:17146319-17146338 None:intergenic 40.0%
ATCTGATGCTCCAGAACTAT+AGG - chr6.2:17145971-17145990 None:intergenic 40.0%
ATTAATTCACCATCGTCTGC+CGG + chr6.2:17146430-17146449 MS.gene55513:intron 40.0%
CCTTGATTGAATCTCAAAGC+AGG + chr6.2:17146221-17146240 MS.gene55513:CDS 40.0%
CGAGAACAACACTATTGTGT+GGG + chr6.2:17145613-17145632 MS.gene55513:CDS 40.0%
CTATCATACCATGGTCATAC+AGG - chr6.2:17147009-17147028 None:intergenic 40.0%
CTGTATGACCATGGTATGAT+AGG + chr6.2:17147007-17147026 MS.gene55513:intron 40.0%
GAGCATCAGATCAAACTATC+GGG + chr6.2:17145980-17145999 MS.gene55513:CDS 40.0%
GCGCCATATGAGATGAAAAT+AGG - chr6.2:17146817-17146836 None:intergenic 40.0%
GGTGAAAGCTTAAACTTCTC+AGG - chr6.2:17145737-17145756 None:intergenic 40.0%
TGAGAAACCAATGCAGGAAA+GGG + chr6.2:17145232-17145251 MS.gene55513:CDS 40.0%
TGCGTATAAAGAGCAGATTC+CGG - chr6.2:17145272-17145291 None:intergenic 40.0%
! CACACAATAGTGTTGTTCTC+GGG - chr6.2:17145614-17145633 None:intergenic 40.0%
! CCACACAATAGTGTTGTTCT+CGG - chr6.2:17145615-17145634 None:intergenic 40.0%
! GCGCCTATTTTCATCTCATA+TGG + chr6.2:17146811-17146830 MS.gene55513:intron 40.0%
! GGAGCATCAGATCAAACTAT+CGG + chr6.2:17145979-17145998 MS.gene55513:CDS 40.0%
! TAAGCTTTCACCAGCATTGA+CGG + chr6.2:17145745-17145764 MS.gene55513:CDS 40.0%
! TCCCCAAATACTTTCTGAAG+AGG - chr6.2:17145887-17145906 None:intergenic 40.0%
! TCTTAGGTATCGTGCGAATT+TGG - chr6.2:17145424-17145443 None:intergenic 40.0%
! TGCTGCACTTTCTAGAAAGA+AGG + chr6.2:17145319-17145338 MS.gene55513:CDS 40.0%
!! CAGCCTCTTCAGAAAGTATT+TGG + chr6.2:17145881-17145900 MS.gene55513:CDS 40.0%
!! CCTGCTTTGAGATTCAATCA+AGG - chr6.2:17146224-17146243 None:intergenic 40.0%
!! GCCTCTTCAGAAAGTATTTG+GGG + chr6.2:17145883-17145902 MS.gene55513:CDS 40.0%
!!! CATTTTCTAAGACCTGCAAC+TGG + chr6.2:17146979-17146998 MS.gene55513:intron 40.0%
!!! GGTTTTGAAGTGAAGAGGAA+AGG + chr6.2:17145665-17145684 MS.gene55513:CDS 40.0%
AAGGGAGTTGTCTGCACTAT+TGG + chr6.2:17146063-17146082 MS.gene55513:CDS 45.0%
ACTATCTTCAGAGTCCACGT+CGG - chr6.2:17145464-17145483 None:intergenic 45.0%
CCGAGAACAACACTATTGTG+TGG + chr6.2:17145612-17145631 MS.gene55513:CDS 45.0%
CTGAGAAACCAATGCAGGAA+AGG + chr6.2:17145231-17145250 MS.gene55513:CDS 45.0%
GCAGACAACTCCCTTTGAAT+AGG - chr6.2:17146058-17146077 None:intergenic 45.0%
GCCGAGAACTTTGGATACAT+CGG - chr6.2:17145548-17145567 None:intergenic 45.0%
GTTAGTTCCATCGGTCTCAA+CGG - chr6.2:17145176-17145195 None:intergenic 45.0%
TATCGGGAAATAGTCCAGCT+GGG + chr6.2:17145996-17146015 MS.gene55513:CDS 45.0%
TATGGCACTATGTGAAGGCT+AGG + chr6.2:17145816-17145835 MS.gene55513:CDS 45.0%
TCAAAACCTTCTTGAGGAGC+AGG - chr6.2:17145653-17145672 None:intergenic 45.0%
TGATGCTCCAGAACTATAGG+TGG - chr6.2:17145968-17145987 None:intergenic 45.0%
TGCGATATGGCACTATGTGA+AGG + chr6.2:17145811-17145830 MS.gene55513:CDS 45.0%
TGCTCAAAGCTTACCATGGT+TGG - chr6.2:17146315-17146334 None:intergenic 45.0%
TTGTTCTCGGGATATAGCCT+CGG - chr6.2:17145602-17145621 None:intergenic 45.0%
! ACGTGGACTCTGAAGATAGT+TGG + chr6.2:17145464-17145483 MS.gene55513:CDS 45.0%
! CGTGGACTCTGAAGATAGTT+GGG + chr6.2:17145465-17145484 MS.gene55513:CDS 45.0%
! GAAAAATCCACGAGCATCGT+AGG + chr6.2:17146146-17146165 MS.gene55513:CDS 45.0%
! GAAGATAGTTGGGAGGGTAT+TGG + chr6.2:17145475-17145494 MS.gene55513:CDS 45.0%
! GACTCTGAAGATAGTTGGGA+GGG + chr6.2:17145469-17145488 MS.gene55513:CDS 45.0%
! GAGTGCTTGTTACGATGCAA+TGG + chr6.2:17146018-17146037 MS.gene55513:CDS 45.0%
! TTTGAAACCACCTATGAGGC+CGG + chr6.2:17145121-17145140 MS.gene55513:CDS 45.0%
!! CTTTCCTGCATTGGTTTCTC+AGG - chr6.2:17145233-17145252 None:intergenic 45.0%
!! GTCCTTTGAAACCACCTATG+AGG + chr6.2:17145117-17145136 MS.gene55513:CDS 45.0%
!! TTCTGAGGCGAAAATCCAAC+CGG - chr6.2:17145143-17145162 None:intergenic 45.0%
!!! TCTTTTTCAGCACTGCGACT+AGG - chr6.2:17146271-17146290 None:intergenic 45.0%
!! TATAAAATAAAATAAAACAA+TGG - chr6.2:17146362-17146381 None:intergenic 5.0%
CAATCAATTCCGGCAGACGA+TGG - chr6.2:17146442-17146461 None:intergenic 50.0%
CTATCGGGAAATAGTCCAGC+TGG + chr6.2:17145995-17146014 MS.gene55513:CDS 50.0%
GAAAATCCAACCGGCCTCAT+AGG - chr6.2:17145134-17145153 None:intergenic 50.0%
GAAACCAATGCAGGAAAGGG+TGG + chr6.2:17145235-17145254 MS.gene55513:CDS 50.0%
GACGACTTCTGAACTACTCC+CGG - chr6.2:17145524-17145543 None:intergenic 50.0%
GCAAGAACTTCCGTCAATGC+TGG - chr6.2:17145758-17145777 None:intergenic 50.0%
GCTTCCTGAGAAACCAATGC+AGG + chr6.2:17145226-17145245 MS.gene55513:CDS 50.0%
GGCCTCATAGGTGGTTTCAA+AGG - chr6.2:17145122-17145141 None:intergenic 50.0%
TCTCGAGTTTGAGTCTCGTG+TGG + chr6.2:17145295-17145314 MS.gene55513:CDS 50.0%
TGCTCCAGAACTATAGGTGG+TGG - chr6.2:17145965-17145984 None:intergenic 50.0%
TTTCTCACCGTTGAGACCGA+TGG + chr6.2:17145166-17145185 MS.gene55513:CDS 50.0%
! AAATCCACGAGCATCGTAGG+AGG + chr6.2:17146149-17146168 MS.gene55513:CDS 50.0%
! GGACTCTGAAGATAGTTGGG+AGG + chr6.2:17145468-17145487 MS.gene55513:CDS 50.0%
! TCCAGAACTATAGGTGGTGG+AGG - chr6.2:17145962-17145981 None:intergenic 50.0%
!! CCAGAACTATAGGTGGTGGA+GGG - chr6.2:17145961-17145980 None:intergenic 50.0%
!! GTTGGGAGGGTATTGGAAGA+TGG + chr6.2:17145482-17145501 MS.gene55513:CDS 50.0%
!!! AAGGGTGGCTGCTATTTTGC+CGG + chr6.2:17145250-17145269 MS.gene55513:CDS 50.0%
AAACCACCTATGAGGCCGGT+TGG + chr6.2:17145125-17145144 MS.gene55513:CDS 55.0%
AACTAACGCCTGCTGCTGCA+CGG + chr6.2:17145189-17145208 MS.gene55513:CDS 55.0%
AATCCAACCGGCCTCATAGG+TGG - chr6.2:17145131-17145150 None:intergenic 55.0%
AGGAGGCGGGCATTCTTTCT+TGG + chr6.2:17146166-17146185 MS.gene55513:CDS 55.0%
AGGGATCTGAAAGCTGCAGC+TGG + chr6.2:17146241-17146260 MS.gene55513:CDS 55.0%
ATCTTCAGAGTCCACGTCGG+AGG - chr6.2:17145461-17145480 None:intergenic 55.0%
CATACAGGGTTGCCAGTTGC+AGG - chr6.2:17146994-17147013 None:intergenic 55.0%
CCCTCCACCACCTATAGTTC+TGG + chr6.2:17145958-17145977 MS.gene55513:CDS 55.0%
CGATCACCTGCTCCTCAAGA+AGG + chr6.2:17145644-17145663 MS.gene55513:CDS 55.0%
CTGGCAACCCTGTATGACCA+TGG + chr6.2:17146998-17147017 MS.gene55513:intron 55.0%
GAACTACTCCCGGCTGATCA+GGG - chr6.2:17145514-17145533 None:intergenic 55.0%
GCAGCAGGCGTTAGTTCCAT+CGG - chr6.2:17145185-17145204 None:intergenic 55.0%
TCGTAACAAGCACTCCCAGC+TGG - chr6.2:17146013-17146032 None:intergenic 55.0%
TGAACTACTCCCGGCTGATC+AGG - chr6.2:17145515-17145534 None:intergenic 55.0%
TTGAATCGCAAACCCGCTGC+AGG + chr6.2:17147238-17147257 MS.gene55513:CDS 55.0%
! GGCTCGGCATTTGGCTTCTT+AGG - chr6.2:17145440-17145459 None:intergenic 55.0%
! TGGAGCATCACTTCCTGCAG+CGG - chr6.2:17147254-17147273 None:intergenic 55.0%
!! GGTGGTGGAGGGAACAAATG+TGG - chr6.2:17145950-17145969 None:intergenic 55.0%
GCAGCCACCCTTTCCTGCAT+TGG - chr6.2:17145242-17145261 None:intergenic 60.0%
GCTGCAGGAAGTGATGCTCC+AGG + chr6.2:17147253-17147272 MS.gene55513:CDS 60.0%
TTCTTCCTCCGTGCAGCAGC+AGG - chr6.2:17145200-17145219 None:intergenic 60.0%
! GGAGCATCACTTCCTGCAGC+GGG - chr6.2:17147253-17147272 None:intergenic 60.0%
! TCCACGAGCATCGTAGGAGG+CGG + chr6.2:17146152-17146171 MS.gene55513:CDS 60.0%
!! TGGCGTTGACCCTGATCAGC+CGG + chr6.2:17145502-17145521 MS.gene55513:CDS 60.0%
CAAATGCCGAGCCTCCGACG+TGG + chr6.2:17145447-17145466 MS.gene55513:CDS 65.0%
CACGTCGGAGGCTCGGCATT+TGG - chr6.2:17145449-17145468 None:intergenic 65.0%
CAGAGTCCACGTCGGAGGCT+CGG - chr6.2:17145456-17145475 None:intergenic 65.0%
CGTTTCGCACTACCGCTCCC+AGG - chr6.2:17145095-17145114 None:intergenic 65.0%
GGGAGCGGTAGTGCGAAACG+TGG + chr6.2:17145095-17145114 MS.gene55513:CDS 65.0%
TAACGCCTGCTGCTGCACGG+AGG + chr6.2:17145192-17145211 MS.gene55513:CDS 65.0%
! CCACGAGCATCGTAGGAGGC+GGG + chr6.2:17146153-17146172 MS.gene55513:CDS 65.0%
!! GGCGTTGACCCTGATCAGCC+GGG + chr6.2:17145503-17145522 MS.gene55513:CDS 65.0%
CCCGCCTCCTACGATGCTCG+TGG - chr6.2:17146156-17146175 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 17145083 17147285 17145083 ID=MS.gene55513
chr6.2 mRNA 17145083 17147285 17145083 ID=MS.gene55513.t1;Parent=MS.gene55513
chr6.2 exon 17145083 17146320 17145083 ID=MS.gene55513.t1.exon1;Parent=MS.gene55513.t1
chr6.2 CDS 17145083 17146320 17145083 ID=cds.MS.gene55513.t1;Parent=MS.gene55513.t1
chr6.2 exon 17147213 17147285 17147213 ID=MS.gene55513.t1.exon2;Parent=MS.gene55513.t1
chr6.2 CDS 17147213 17147285 17147213 ID=cds.MS.gene55513.t1;Parent=MS.gene55513.t1
Gene Sequence

>MS.gene55513

ATGTCTACGCCTGGGAGCGGTAGTGCGAAACGTGGTCCTTTGAAACCACCTATGAGGCCGGTTGGATTTTCGCCTCAGAATAATTTCTCACCGTTGAGACCGATGGAACTAACGCCTGCTGCTGCACGGAGGAAGAAGCAGAAGCTTCCTGAGAAACCAATGCAGGAAAGGGTGGCTGCTATTTTGCCGGAATCTGCTCTTTATACGCAGCTTCTCGAGTTTGAGTCTCGTGTGGATGCTGCACTTTCTAGAAAGAAGGTTGATATTCAGGAAGCGCTGAAAAATCCGCCTTGTATTCAGAAAACTCTTCGTATTTATGTATTTAACACTTTTGCAAACCAAATTCGCACGATACCTAAGAAGCCAAATGCCGAGCCTCCGACGTGGACTCTGAAGATAGTTGGGAGGGTATTGGAAGATGGCGTTGACCCTGATCAGCCGGGAGTAGTTCAGAAGTCGTCACCGATGTATCCAAAGTTCTCGGCTTTCTTTAAAAAAGTAATCATTACTTTGGATCCGAGGCTATATCCCGAGAACAACACTATTGTGTGGGATAGTTATCGATCACCTGCTCCTCAAGAAGGTTTTGAAGTGAAGAGGAAAGGGGATAAAGAGTTTTCGGTGAATATACAGTTTTATATGAATTATGCACCTGAGAAGTTTAAGCTTTCACCAGCATTGACGGAAGTTCTTGCTATCGACGTTGATACTCGTCCAAGAATTATTGCTGCGATATGGCACTATGTGAAGGCTAGGAAACTACAGAACCCTAACGACCCTTCTTTTTTTCACTGTGATCAGCCTCTTCAGAAAGTATTTGGGGAAGAAAAGGTGAAGTTCACAACAGTTTCGCAGAAAATATCGCCACATTTGTTCCCTCCACCACCTATAGTTCTGGAGCATCAGATCAAACTATCGGGAAATAGTCCAGCTGGGAGTGCTTGTTACGATGCAATGGTTGATATTCCTTTTCCTATTCAAAGGGAGTTGTCTGCACTATTGGCAAATGTCGAGAAGAACAAAGAGATTGAAACATGTGATGAAGCGATATGTGGAATCATTAGAAAAATCCACGAGCATCGTAGGAGGCGGGCATTCTTTCTTGGTTTCAGTCAATCTCCAGTAGAATTTATTAATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAGCTGCAGCTGGAGAACCTAGTCGCAGTGCTGAAAAAGAGCGTCGAGCAGATTTTTTCAACCAACCATGGTAAGCTTTGAGCACTATCTCTGCTCATTTTCTGTCCTCCATTGTTTTATTTTATTTTATATTTTGTTTTTTGCTTGTCTCCTTTATTTGCTACCATCTTTGATTGCAAATTAATTCACCATCGTCTGCCGGAATTGATTGTGATTGACTCGAATCAGATATAATTTAGAAGAGAAATGATATTTGTACAACCTTTTTTAACAACTTTTTGACAACTTTCTCTCTCGTACTCACATTATCTTCTTATTCTCTCTCTTTTTCTCTCTCTATTATTTTTGACCAATCAAAGGAGAGAAAACCAAAATTGTCATAAAAGTTGTACCAAAGAGTTGTACAAATATCACTACTCAATTTAGAATTGTCATTATACTTCTGTGATTAATAGTCCCTTCCCCATTTCAAAAAAGAAGTCCCCTTCCATATATTGTCTTAGTTGTTGAGGATTTATATATAAACTTAGTATATATGTTAGTTGGACTGTTGGATTTATGCGCCTATTTTCATCTCATATGGCGCAATGTTGTCAAATAGCGTACTATGCTGTTATAGCATAGCATAATTTGAACAAATCATGATTATTCTGCTATATGCTATTTGGCACAAAGTATTGGCAAATATCGGCGCTGTAGTGTAGTGTAGCAGATTTTTAACAAACCATCATTTTCTAAGACCTGCAACTGGCAACCCTGTATGACCATGGTATGATAGGATTTCATTTCAAATGTTTTAAAATGCATGGTTTTTTTCTTCTTCTGTGCACAATCCAGTTAAAATAAGACTAGAATCAACGTGTCTGTATTTTCTATGTTTTATGGATACATTTTACTATTAAGTATTAACTATATCAATTATCATTCACTGAAATTCATATATTGTTTGACAACATGAGCAGGGTTGAAGATGCTGTTATTCGATACTTGAATCGCAAACCCGCTGCAGGAAGTGATGCTCCAGGAAGCACGTGA
Protein sequence

>MS.gene55513.t1

MSTPGSGSAKRGPLKPPMRPVGFSPQNNFSPLRPMELTPAAARRKKQKLPEKPMQERVAAILPESALYTQLLEFESRVDAALSRKKVDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPKKPNAEPPTWTLKIVGRVLEDGVDPDQPGVVQKSSPMYPKFSAFFKKVIITLDPRLYPENNTIVWDSYRSPAPQEGFEVKRKGDKEFSVNIQFYMNYAPEKFKLSPALTEVLAIDVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDQPLQKVFGEEKVKFTTVSQKISPHLFPPPPIVLEHQIKLSGNSPAGSACYDAMVDIPFPIQRELSALLANVEKNKEIETCDEAICGIIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSRDLKAAAGEPSRSAEKERRADFFNQPWVEDAVIRYLNRKPAAGSDAPGST