Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006168.t1 | XP_003592100.1 | 94.6 | 404 | 19 | 1 | 1 | 401 | 1 | 404 | 1.20E-194 | 689.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006168.t1 | G7IBZ7 | 94.6 | 404 | 19 | 1 | 1 | 401 | 1 | 404 | 8.8e-195 | 689.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006168 | MS.gene76042 | PPI |
| MS.gene006168 | MS.gene60684 | PPI |
| MS.gene59219 | MS.gene006168 | PPI |
| MS.gene006168 | MS.gene59219 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006168.t1 | MTR_1g098700 | 95.545 | 404 | 15 | 1 | 1 | 401 | 1 | 404 | 0.0 | 805 |
| MS.gene006168.t1 | MTR_6g037000 | 62.972 | 397 | 120 | 4 | 3 | 396 | 4 | 376 | 8.19e-180 | 505 |
| MS.gene006168.t1 | MTR_6g036920 | 62.814 | 398 | 121 | 4 | 3 | 397 | 4 | 377 | 1.05e-170 | 482 |
| MS.gene006168.t1 | MTR_6g037010 | 57.104 | 366 | 108 | 3 | 32 | 396 | 1 | 318 | 6.02e-143 | 410 |
| MS.gene006168.t1 | MTR_4g094375 | 54.726 | 402 | 162 | 4 | 1 | 397 | 1 | 387 | 1.78e-141 | 409 |
| MS.gene006168.t1 | MTR_8g098895 | 42.998 | 407 | 192 | 11 | 2 | 396 | 3 | 381 | 1.42e-89 | 276 |
| MS.gene006168.t1 | MTR_6g037060 | 60.699 | 229 | 63 | 4 | 3 | 228 | 4 | 208 | 1.08e-85 | 260 |
| MS.gene006168.t1 | MTR_6g036980 | 63.522 | 159 | 55 | 1 | 32 | 187 | 1 | 159 | 2.56e-65 | 206 |
| MS.gene006168.t1 | MTR_6g037070 | 67.939 | 131 | 41 | 1 | 268 | 397 | 1 | 131 | 1.18e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006168.t1 | AT1G18740 | 60.049 | 408 | 125 | 7 | 1 | 396 | 1 | 382 | 9.28e-173 | 488 |
| MS.gene006168.t1 | AT1G74450 | 58.810 | 420 | 133 | 7 | 1 | 403 | 1 | 397 | 6.87e-166 | 471 |
| MS.gene006168.t1 | AT1G43630 | 56.863 | 408 | 145 | 8 | 6 | 403 | 27 | 413 | 4.20e-161 | 459 |
| MS.gene006168.t1 | AT1G63930 | 37.176 | 425 | 214 | 11 | 2 | 396 | 3 | 404 | 2.49e-93 | 286 |
| MS.gene006168.t1 | AT4G11300 | 36.070 | 402 | 215 | 12 | 2 | 396 | 3 | 369 | 2.14e-68 | 221 |
| MS.gene006168.t1 | AT4G23530 | 37.805 | 410 | 206 | 14 | 3 | 391 | 4 | 385 | 4.26e-60 | 200 |
Find 100 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTTCTCCTCAGTTAA+TGG | 0.103360 | 1.4:+76773918 | None:intergenic |
| CCTTCATCGTTAACAAATTT+TGG | 0.118674 | 1.4:-76774917 | MS.gene006168:CDS |
| ATTCTTCCTTTCGCGCTTCT+TGG | 0.234533 | 1.4:+76774022 | None:intergenic |
| ACCTATCAACATCGGTCTTT+GGG | 0.264790 | 1.4:-76774332 | MS.gene006168:CDS |
| CGTGGAGTGTTTCTCGTACT+TGG | 0.273934 | 1.4:-76774292 | MS.gene006168:CDS |
| CACCTATCAACATCGGTCTT+TGG | 0.290128 | 1.4:-76774333 | MS.gene006168:CDS |
| ATGAATTGCTTTCACTCAAA+TGG | 0.307901 | 1.4:-76774766 | MS.gene006168:CDS |
| GAAGGATGGGCTTGATCCCT+TGG | 0.336411 | 1.4:-76773847 | MS.gene006168:CDS |
| TCCAAGAGCAAATGATCTTA+TGG | 0.351747 | 1.4:-76774225 | MS.gene006168:CDS |
| ATAGCCCAAGTGTAACTTCT+TGG | 0.363666 | 1.4:+76774083 | None:intergenic |
| GCAGGTTGTCAGACCACCTT+TGG | 0.368006 | 1.4:-76774672 | MS.gene006168:CDS |
| GTCTGTTTATATCATGAATT+CGG | 0.368410 | 1.4:-76774183 | MS.gene006168:CDS |
| GCTAGACAGCTCCAAGCAAT+TGG | 0.379594 | 1.4:-76774263 | MS.gene006168:CDS |
| CAAATGCTTCTATTGCTCAT+AGG | 0.383256 | 1.4:-76774430 | MS.gene006168:CDS |
| ACAAGTTACTCAGCATTGTT+TGG | 0.391925 | 1.4:+76773753 | None:intergenic |
| TGCTTTCACTCAAATGGGTT+GGG | 0.405982 | 1.4:-76774760 | MS.gene006168:CDS |
| CGGTCTTGTTGTTTGTTATG+TGG | 0.416918 | 1.4:-76774163 | MS.gene006168:CDS |
| TCTAAGCTTTCGTCGTGAAC+AGG | 0.420508 | 1.4:-76774885 | MS.gene006168:CDS |
| AAAAGTTTGTGATGCTTTGA+AGG | 0.422996 | 1.4:-76773865 | MS.gene006168:CDS |
| GCTCATAGGAATCGATCATT+TGG | 0.426557 | 1.4:-76774416 | MS.gene006168:CDS |
| TGAACGGAGTGTGAAGGCTT+TGG | 0.427355 | 1.4:-76774627 | MS.gene006168:CDS |
| GCCATAAGATCATTTGCTCT+TGG | 0.428544 | 1.4:+76774224 | None:intergenic |
| GATGAGTGATTTGGCTGATT+CGG | 0.429315 | 1.4:-76773949 | MS.gene006168:CDS |
| CCAAAATTTGTTAACGATGA+AGG | 0.429552 | 1.4:+76774917 | None:intergenic |
| TCAATTAGTTTGCTCGATGA+TGG | 0.442451 | 1.4:-76774461 | MS.gene006168:CDS |
| ATTCAATCCACGGTCTTGGC+AGG | 0.444612 | 1.4:+76774121 | None:intergenic |
| ATAAGATCATTTGCTCTTGG+AGG | 0.449559 | 1.4:+76774227 | None:intergenic |
| AATGATCTTATGGCAACTAA+TGG | 0.450052 | 1.4:-76774215 | MS.gene006168:CDS |
| TAATGTTGTTCCCAATTGCT+TGG | 0.452399 | 1.4:+76774252 | None:intergenic |
| TCGTGAACAGGTTCATTCAA+TGG | 0.455511 | 1.4:-76774873 | MS.gene006168:CDS |
| GCACATTCAATCCACGGTCT+TGG | 0.461101 | 1.4:+76774117 | None:intergenic |
| TTGCTTTCACTCAAATGGGT+TGG | 0.470637 | 1.4:-76774761 | MS.gene006168:CDS |
| CCATTAACTGAGGAGAAAGA+AGG | 0.471352 | 1.4:-76773918 | MS.gene006168:CDS |
| GGTCTTGTTGTTTGTTATGT+GGG | 0.477920 | 1.4:-76774162 | MS.gene006168:CDS |
| GGAGATTGTTCTTTATGCAT+TGG | 0.478527 | 1.4:-76774546 | MS.gene006168:CDS |
| ACAGAAGGGCTTGATTCTCT+TGG | 0.480056 | 1.4:-76773780 | MS.gene006168:CDS |
| ATCCCTTGGAGCGACAGGTA+AGG | 0.481679 | 1.4:-76773833 | MS.gene006168:CDS |
| TAGTTTGCTCGATGATGGTA+AGG | 0.484108 | 1.4:-76774456 | MS.gene006168:CDS |
| CCCCAAAGACCGATGTTGAT+AGG | 0.490236 | 1.4:+76774331 | None:intergenic |
| TGAATTGCTTTCACTCAAAT+GGG | 0.491553 | 1.4:-76774765 | MS.gene006168:CDS |
| CACACTCCGTTCAAAATACT+CGG | 0.497877 | 1.4:+76774637 | None:intergenic |
| GCGTTGAACAGATTCGTGTT+TGG | 0.499782 | 1.4:-76774580 | MS.gene006168:CDS |
| TGTTAGGGTGATGAGTGATT+TGG | 0.500530 | 1.4:-76773958 | MS.gene006168:CDS |
| TTCAATGGAAGGTTCAACCT+TGG | 0.503837 | 1.4:-76774858 | MS.gene006168:CDS |
| CAGACCACCTTTGGATCGAA+TGG | 0.504656 | 1.4:-76774663 | MS.gene006168:CDS |
| CTAGACAGCTCCAAGCAATT+GGG | 0.505291 | 1.4:-76774262 | MS.gene006168:CDS |
| GCTTGATCCCTTGGAGCGAC+AGG | 0.506665 | 1.4:-76773838 | MS.gene006168:CDS |
| TAAACTCCTCTTGACAAATG+AGG | 0.508909 | 1.4:+76774720 | None:intergenic |
| TCCCTTGGAGCGACAGGTAA+GGG | 0.514106 | 1.4:-76773832 | MS.gene006168:CDS |
| GGCAATTTAGATCACTTTCG+TGG | 0.514581 | 1.4:-76774310 | MS.gene006168:CDS |
| GCATTCCAAGAAGTTACACT+TGG | 0.514625 | 1.4:-76774088 | MS.gene006168:CDS |
| TTGGATCATCAGAGGAGTAT+TGG | 0.515295 | 1.4:-76774527 | MS.gene006168:CDS |
| TTCCCTTACCTGTCGCTCCA+AGG | 0.520164 | 1.4:+76773830 | None:intergenic |
| CATTAACTGAGGAGAAAGAA+GGG | 0.525206 | 1.4:-76773917 | MS.gene006168:CDS |
| CCCTTTGTGAGTATGAAGAA+TGG | 0.526236 | 1.4:+76774694 | None:intergenic |
| AGGAGTCCAAGAAGCGCGAA+AGG | 0.529552 | 1.4:-76774028 | MS.gene006168:CDS |
| CGATCATTTGGTCGTAGCAA+TGG | 0.535372 | 1.4:-76774404 | MS.gene006168:CDS |
| TCGTGTTTGGCAGAAGCTGT+TGG | 0.535925 | 1.4:-76774567 | MS.gene006168:CDS |
| GTTTGTGATGCTTTGAAGGA+TGG | 0.538717 | 1.4:-76773861 | MS.gene006168:CDS |
| TTGCTTCCTCATTTGTCAAG+AGG | 0.544215 | 1.4:-76774726 | MS.gene006168:CDS |
| GTTTGTTATGTGGGCTCTTG+TGG | 0.547659 | 1.4:-76774153 | MS.gene006168:CDS |
| TCCCTTACCTGTCGCTCCAA+GGG | 0.547819 | 1.4:+76773831 | None:intergenic |
| CTGTTCAACGCCGTCACGAA+TGG | 0.550491 | 1.4:+76774592 | None:intergenic |
| TTTGTGATGCTTTGAAGGAT+GGG | 0.551111 | 1.4:-76773860 | MS.gene006168:CDS |
| TCTTCATACTCACAAAGGGC+AGG | 0.563122 | 1.4:-76774690 | MS.gene006168:CDS |
| CCATTCTTCATACTCACAAA+GGG | 0.564572 | 1.4:-76774694 | MS.gene006168:CDS |
| GAACAGGTTCATTCAATGGA+AGG | 0.566303 | 1.4:-76774869 | MS.gene006168:CDS |
| ATGCCCGCTACGGACTATCA+AGG | 0.570752 | 1.4:-76774947 | MS.gene006168:CDS |
| GCCATTCTTCATACTCACAA+AGG | 0.575268 | 1.4:-76774695 | MS.gene006168:CDS |
| GAACCTTGATAGTCCGTAGC+GGG | 0.577431 | 1.4:+76774944 | None:intergenic |
| TTCAATCCACGGTCTTGGCA+GGG | 0.582419 | 1.4:+76774122 | None:intergenic |
| AGTGAAAGCAATTCATCATG+AGG | 0.582569 | 1.4:+76774773 | None:intergenic |
| TTATGTGAGAATGCCCGCTA+CGG | 0.587733 | 1.4:-76774957 | None:intergenic |
| AAGGGCTTGATTCTCTTGGT+AGG | 0.590533 | 1.4:-76773776 | MS.gene006168:CDS |
| CTCTCGTGGAGTGAGAGCAA+TGG | 0.595839 | 1.4:+76774059 | None:intergenic |
| GTTTGTAACGCCATTCGTGA+CGG | 0.597336 | 1.4:-76774602 | MS.gene006168:CDS |
| CCTATCAACATCGGTCTTTG+GGG | 0.598980 | 1.4:-76774331 | MS.gene006168:CDS |
| TTTATGCATTGGATCATCAG+AGG | 0.599987 | 1.4:-76774535 | MS.gene006168:CDS |
| TGAATCAAGCTCAATCTCCA+AGG | 0.602258 | 1.4:+76774841 | None:intergenic |
| ACTCCTCTGTGATCCTCTCG+TGG | 0.605117 | 1.4:+76774045 | None:intergenic |
| CATTGCTCTCACTCCACGAG+AGG | 0.610865 | 1.4:-76774058 | MS.gene006168:CDS |
| CGCGAAAGGAAGAATGCTTG+TGG | 0.612564 | 1.4:-76774014 | MS.gene006168:CDS |
| ATTGTGCGCAGCAAAACAGA+AGG | 0.614973 | 1.4:-76773795 | MS.gene006168:CDS |
| TCGGAAACCATTCGATCCAA+AGG | 0.615554 | 1.4:+76774656 | None:intergenic |
| GCAATTCCCTGCCAAGACCG+TGG | 0.616147 | 1.4:-76774128 | MS.gene006168:CDS |
| ACGGTCTTGGCAGGGAATTG+CGG | 0.626719 | 1.4:+76774130 | None:intergenic |
| GACGAAAGCTTAGAATTGAA+CGG | 0.631479 | 1.4:+76774894 | None:intergenic |
| GGCGCACTTTCCATTAACTG+AGG | 0.638557 | 1.4:-76773928 | MS.gene006168:CDS |
| TGAAATGCACATTCAATCCA+CGG | 0.640211 | 1.4:+76774111 | None:intergenic |
| TTGTGCGCAGCAAAACAGAA+GGG | 0.653368 | 1.4:-76773794 | MS.gene006168:CDS |
| GAAACCATTCGATCCAAAGG+TGG | 0.656279 | 1.4:+76774659 | None:intergenic |
| ATTAACTGAGGAGAAAGAAG+GGG | 0.656511 | 1.4:-76773916 | MS.gene006168:CDS |
| CATTCCAAGAAGTTACACTT+GGG | 0.659636 | 1.4:-76774087 | MS.gene006168:CDS |
| CATCAGAGGAGTATTGGTGA+AGG | 0.661798 | 1.4:-76774521 | MS.gene006168:CDS |
| GATAAAGATCAGCATCAACA+TGG | 0.662609 | 1.4:-76774374 | MS.gene006168:CDS |
| TCATTTGGTCGTAGCAATGG+TGG | 0.670155 | 1.4:-76774401 | MS.gene006168:CDS |
| AGTTAGACAGAGAGTTCACG+AGG | 0.670722 | 1.4:-76773892 | MS.gene006168:CDS |
| GCAATAACACCTATCAACAT+CGG | 0.671842 | 1.4:-76774340 | MS.gene006168:CDS |
| CGAACCTTGATAGTCCGTAG+CGG | 0.776669 | 1.4:+76774943 | None:intergenic |
| ACTCCACGAGAGGATCACAG+AGG | 0.822423 | 1.4:-76774048 | MS.gene006168:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTGAAAAATGTGTT+AGG | - | chr1.4:76774731-76774750 | MS.gene006168:CDS | 20.0% |
| !! | ACAAATTGAAAAATGTGTTA+GGG | - | chr1.4:76774732-76774751 | MS.gene006168:CDS | 20.0% |
| ! | GTCTGTTTATATCATGAATT+CGG | - | chr1.4:76774522-76774541 | MS.gene006168:CDS | 25.0% |
| AAAAGTTTGTGATGCTTTGA+AGG | - | chr1.4:76774840-76774859 | MS.gene006168:CDS | 30.0% | |
| AATGATCTTATGGCAACTAA+TGG | - | chr1.4:76774490-76774509 | MS.gene006168:CDS | 30.0% | |
| ATGAATTGCTTTCACTCAAA+TGG | - | chr1.4:76773939-76773958 | MS.gene006168:CDS | 30.0% | |
| TGAATTGCTTTCACTCAAAT+GGG | - | chr1.4:76773940-76773959 | MS.gene006168:CDS | 30.0% | |
| ! | CCTTCATCGTTAACAAATTT+TGG | - | chr1.4:76773788-76773807 | MS.gene006168:CDS | 30.0% |
| !! | CCAAAATTTGTTAACGATGA+AGG | + | chr1.4:76773791-76773810 | None:intergenic | 30.0% |
| AGTGAAAGCAATTCATCATG+AGG | + | chr1.4:76773935-76773954 | None:intergenic | 35.0% | |
| ATAAGATCATTTGCTCTTGG+AGG | + | chr1.4:76774481-76774500 | None:intergenic | 35.0% | |
| ATTAACTGAGGAGAAAGAAG+GGG | - | chr1.4:76774789-76774808 | MS.gene006168:CDS | 35.0% | |
| CAAATGCTTCTATTGCTCAT+AGG | - | chr1.4:76774275-76774294 | MS.gene006168:CDS | 35.0% | |
| CATTAACTGAGGAGAAAGAA+GGG | - | chr1.4:76774788-76774807 | MS.gene006168:CDS | 35.0% | |
| CATTCCAAGAAGTTACACTT+GGG | - | chr1.4:76774618-76774637 | MS.gene006168:CDS | 35.0% | |
| CCATTCTTCATACTCACAAA+GGG | - | chr1.4:76774011-76774030 | MS.gene006168:CDS | 35.0% | |
| GACGAAAGCTTAGAATTGAA+CGG | + | chr1.4:76773814-76773833 | None:intergenic | 35.0% | |
| GATAAAGATCAGCATCAACA+TGG | - | chr1.4:76774331-76774350 | MS.gene006168:CDS | 35.0% | |
| GCAATAACACCTATCAACAT+CGG | - | chr1.4:76774365-76774384 | MS.gene006168:CDS | 35.0% | |
| GGAGATTGTTCTTTATGCAT+TGG | - | chr1.4:76774159-76774178 | MS.gene006168:CDS | 35.0% | |
| TAAACTCCTCTTGACAAATG+AGG | + | chr1.4:76773988-76774007 | None:intergenic | 35.0% | |
| TAATGTTGTTCCCAATTGCT+TGG | + | chr1.4:76774456-76774475 | None:intergenic | 35.0% | |
| TCCAAGAGCAAATGATCTTA+TGG | - | chr1.4:76774480-76774499 | MS.gene006168:CDS | 35.0% | |
| TGAAATGCACATTCAATCCA+CGG | + | chr1.4:76774597-76774616 | None:intergenic | 35.0% | |
| TTTATGCATTGGATCATCAG+AGG | - | chr1.4:76774170-76774189 | MS.gene006168:CDS | 35.0% | |
| !! | GGTCTTGTTGTTTGTTATGT+GGG | - | chr1.4:76774543-76774562 | MS.gene006168:CDS | 35.0% |
| !! | TCAATTAGTTTGCTCGATGA+TGG | - | chr1.4:76774244-76774263 | MS.gene006168:CDS | 35.0% |
| !! | TGGTTTCCGAGTATTTTGAA+CGG | - | chr1.4:76774062-76774081 | MS.gene006168:CDS | 35.0% |
| !! | TTTGTGATGCTTTGAAGGAT+GGG | - | chr1.4:76774845-76774864 | MS.gene006168:CDS | 35.0% |
| ACCTATCAACATCGGTCTTT+GGG | - | chr1.4:76774373-76774392 | MS.gene006168:CDS | 40.0% | |
| ATAGCCCAAGTGTAACTTCT+TGG | + | chr1.4:76774625-76774644 | None:intergenic | 40.0% | |
| CACACTCCGTTCAAAATACT+CGG | + | chr1.4:76774071-76774090 | None:intergenic | 40.0% | |
| CCATTAACTGAGGAGAAAGA+AGG | - | chr1.4:76774787-76774806 | MS.gene006168:CDS | 40.0% | |
| CCCTTTGTGAGTATGAAGAA+TGG | + | chr1.4:76774014-76774033 | None:intergenic | 40.0% | |
| CCTTCTTTCTCCTCAGTTAA+TGG | + | chr1.4:76774790-76774809 | None:intergenic | 40.0% | |
| GAACAGGTTCATTCAATGGA+AGG | - | chr1.4:76773836-76773855 | MS.gene006168:CDS | 40.0% | |
| GCATTCCAAGAAGTTACACT+TGG | - | chr1.4:76774617-76774636 | MS.gene006168:CDS | 40.0% | |
| GCCATAAGATCATTTGCTCT+TGG | + | chr1.4:76774484-76774503 | None:intergenic | 40.0% | |
| GCCATTCTTCATACTCACAA+AGG | - | chr1.4:76774010-76774029 | MS.gene006168:CDS | 40.0% | |
| GCTCATAGGAATCGATCATT+TGG | - | chr1.4:76774289-76774308 | MS.gene006168:CDS | 40.0% | |
| GGCAATTTAGATCACTTTCG+TGG | - | chr1.4:76774395-76774414 | MS.gene006168:CDS | 40.0% | |
| TCGTGAACAGGTTCATTCAA+TGG | - | chr1.4:76773832-76773851 | MS.gene006168:CDS | 40.0% | |
| TGAATCAAGCTCAATCTCCA+AGG | + | chr1.4:76773867-76773886 | None:intergenic | 40.0% | |
| TGTTAGGGTGATGAGTGATT+TGG | - | chr1.4:76774747-76774766 | MS.gene006168:CDS | 40.0% | |
| TTCAATGGAAGGTTCAACCT+TGG | - | chr1.4:76773847-76773866 | MS.gene006168:CDS | 40.0% | |
| TTGCTTCCTCATTTGTCAAG+AGG | - | chr1.4:76773979-76773998 | MS.gene006168:CDS | 40.0% | |
| TTGCTTTCACTCAAATGGGT+TGG | - | chr1.4:76773944-76773963 | MS.gene006168:CDS | 40.0% | |
| ! | GATGAGTGATTTGGCTGATT+CGG | - | chr1.4:76774756-76774775 | MS.gene006168:CDS | 40.0% |
| ! | TGCTTTCACTCAAATGGGTT+GGG | - | chr1.4:76773945-76773964 | MS.gene006168:CDS | 40.0% |
| ! | TTGGATCATCAGAGGAGTAT+TGG | - | chr1.4:76774178-76774197 | MS.gene006168:CDS | 40.0% |
| ! | TTTTGCTGCGCACAATTCTA+TGG | + | chr1.4:76774906-76774925 | None:intergenic | 40.0% |
| !! | CGGTCTTGTTGTTTGTTATG+TGG | - | chr1.4:76774542-76774561 | MS.gene006168:CDS | 40.0% |
| !! | GTATTTTGAACGGAGTGTGA+AGG | - | chr1.4:76774072-76774091 | MS.gene006168:CDS | 40.0% |
| !! | GTTTGTGATGCTTTGAAGGA+TGG | - | chr1.4:76774844-76774863 | MS.gene006168:CDS | 40.0% |
| !! | TAGTTTGCTCGATGATGGTA+AGG | - | chr1.4:76774249-76774268 | MS.gene006168:CDS | 40.0% |
| AAGGGCTTGATTCTCTTGGT+AGG | - | chr1.4:76774929-76774948 | MS.gene006168:CDS | 45.0% | |
| ACAGAAGGGCTTGATTCTCT+TGG | - | chr1.4:76774925-76774944 | MS.gene006168:CDS | 45.0% | |
| AGTTAGACAGAGAGTTCACG+AGG | - | chr1.4:76774813-76774832 | MS.gene006168:CDS | 45.0% | |
| ATTCTTCCTTTCGCGCTTCT+TGG | + | chr1.4:76774686-76774705 | None:intergenic | 45.0% | |
| ATTGTGCGCAGCAAAACAGA+AGG | - | chr1.4:76774910-76774929 | MS.gene006168:CDS | 45.0% | |
| CACCTATCAACATCGGTCTT+TGG | - | chr1.4:76774372-76774391 | MS.gene006168:CDS | 45.0% | |
| CCTATCAACATCGGTCTTTG+GGG | - | chr1.4:76774374-76774393 | MS.gene006168:CDS | 45.0% | |
| CGATCATTTGGTCGTAGCAA+TGG | - | chr1.4:76774301-76774320 | MS.gene006168:CDS | 45.0% | |
| CTAGACAGCTCCAAGCAATT+GGG | - | chr1.4:76774443-76774462 | MS.gene006168:CDS | 45.0% | |
| GAAACCATTCGATCCAAAGG+TGG | + | chr1.4:76774049-76774068 | None:intergenic | 45.0% | |
| GCGTTGAACAGATTCGTGTT+TGG | - | chr1.4:76774125-76774144 | MS.gene006168:CDS | 45.0% | |
| GTTTGTAACGCCATTCGTGA+CGG | - | chr1.4:76774103-76774122 | MS.gene006168:CDS | 45.0% | |
| TCATTTGGTCGTAGCAATGG+TGG | - | chr1.4:76774304-76774323 | MS.gene006168:CDS | 45.0% | |
| TCGGAAACCATTCGATCCAA+AGG | + | chr1.4:76774052-76774071 | None:intergenic | 45.0% | |
| TCTAAGCTTTCGTCGTGAAC+AGG | - | chr1.4:76773820-76773839 | MS.gene006168:CDS | 45.0% | |
| TCTTCATACTCACAAAGGGC+AGG | - | chr1.4:76774015-76774034 | MS.gene006168:CDS | 45.0% | |
| TTGTGCGCAGCAAAACAGAA+GGG | - | chr1.4:76774911-76774930 | MS.gene006168:CDS | 45.0% | |
| !! | CATCAGAGGAGTATTGGTGA+AGG | - | chr1.4:76774184-76774203 | MS.gene006168:CDS | 45.0% |
| !! | GTTTGTTATGTGGGCTCTTG+TGG | - | chr1.4:76774552-76774571 | MS.gene006168:CDS | 45.0% |
| ATTCAATCCACGGTCTTGGC+AGG | + | chr1.4:76774587-76774606 | None:intergenic | 50.0% | |
| CAGACCACCTTTGGATCGAA+TGG | - | chr1.4:76774042-76774061 | MS.gene006168:CDS | 50.0% | |
| CCCCAAAGACCGATGTTGAT+AGG | + | chr1.4:76774377-76774396 | None:intergenic | 50.0% | |
| CGCGAAAGGAAGAATGCTTG+TGG | - | chr1.4:76774691-76774710 | MS.gene006168:CDS | 50.0% | |
| GCACATTCAATCCACGGTCT+TGG | + | chr1.4:76774591-76774610 | None:intergenic | 50.0% | |
| GCTAGACAGCTCCAAGCAAT+TGG | - | chr1.4:76774442-76774461 | MS.gene006168:CDS | 50.0% | |
| GGCGCACTTTCCATTAACTG+AGG | - | chr1.4:76774777-76774796 | MS.gene006168:CDS | 50.0% | |
| TCGTGTTTGGCAGAAGCTGT+TGG | - | chr1.4:76774138-76774157 | MS.gene006168:CDS | 50.0% | |
| TGAACGGAGTGTGAAGGCTT+TGG | - | chr1.4:76774078-76774097 | MS.gene006168:CDS | 50.0% | |
| TTCAATCCACGGTCTTGGCA+GGG | + | chr1.4:76774586-76774605 | None:intergenic | 50.0% | |
| ! | CGAACCTTGATAGTCCGTAG+CGG | + | chr1.4:76773765-76773784 | None:intergenic | 50.0% |
| ! | CGTGGAGTGTTTCTCGTACT+TGG | - | chr1.4:76774413-76774432 | MS.gene006168:CDS | 50.0% |
| ! | GAACCTTGATAGTCCGTAGC+GGG | + | chr1.4:76773764-76773783 | None:intergenic | 50.0% |
| ACGGTCTTGGCAGGGAATTG+CGG | + | chr1.4:76774578-76774597 | None:intergenic | 55.0% | |
| ACTCCACGAGAGGATCACAG+AGG | - | chr1.4:76774657-76774676 | MS.gene006168:CDS | 55.0% | |
| ACTCCTCTGTGATCCTCTCG+TGG | + | chr1.4:76774663-76774682 | None:intergenic | 55.0% | |
| ATCCCTTGGAGCGACAGGTA+AGG | - | chr1.4:76774872-76774891 | MS.gene006168:CDS | 55.0% | |
| CATTGCTCTCACTCCACGAG+AGG | - | chr1.4:76774647-76774666 | MS.gene006168:CDS | 55.0% | |
| CTCTCGTGGAGTGAGAGCAA+TGG | + | chr1.4:76774649-76774668 | None:intergenic | 55.0% | |
| CTGTTCAACGCCGTCACGAA+TGG | + | chr1.4:76774116-76774135 | None:intergenic | 55.0% | |
| GCAGGTTGTCAGACCACCTT+TGG | - | chr1.4:76774033-76774052 | MS.gene006168:CDS | 55.0% | |
| TCCCTTACCTGTCGCTCCAA+GGG | + | chr1.4:76774877-76774896 | None:intergenic | 55.0% | |
| TCCCTTGGAGCGACAGGTAA+GGG | - | chr1.4:76774873-76774892 | MS.gene006168:CDS | 55.0% | |
| TTCCCTTACCTGTCGCTCCA+AGG | + | chr1.4:76774878-76774897 | None:intergenic | 55.0% | |
| ! | AGGAGTCCAAGAAGCGCGAA+AGG | - | chr1.4:76774677-76774696 | MS.gene006168:CDS | 55.0% |
| ! | ATGCCCGCTACGGACTATCA+AGG | - | chr1.4:76773758-76773777 | MS.gene006168:CDS | 55.0% |
| ! | GAAGGATGGGCTTGATCCCT+TGG | - | chr1.4:76774858-76774877 | MS.gene006168:CDS | 55.0% |
| GCAATTCCCTGCCAAGACCG+TGG | - | chr1.4:76774577-76774596 | MS.gene006168:CDS | 60.0% | |
| GCTTGATCCCTTGGAGCGAC+AGG | - | chr1.4:76774867-76774886 | MS.gene006168:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 76773758 | 76774969 | 76773758 | ID=MS.gene006168 |
| chr1.4 | mRNA | 76773758 | 76774969 | 76773758 | ID=MS.gene006168.t1;Parent=MS.gene006168 |
| chr1.4 | exon | 76773758 | 76774969 | 76773758 | ID=MS.gene006168.t1.exon1;Parent=MS.gene006168.t1 |
| chr1.4 | CDS | 76773758 | 76774969 | 76773758 | ID=cds.MS.gene006168.t1;Parent=MS.gene006168.t1 |
| Gene Sequence |
| Protein sequence |
