Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59219.t1 | XP_003592100.1 | 96.3 | 404 | 15 | 0 | 1 | 404 | 1 | 404 | 1.30E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59219.t1 | G7IBZ7 | 96.3 | 404 | 15 | 0 | 1 | 404 | 1 | 404 | 9.5e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049160 | MS.gene59219 | 0.805268 | 1.45E-49 | -1.69E-46 |
| MS.gene051837 | MS.gene59219 | 0.816458 | 5.47E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59219 | MS.gene006168 | PPI |
| MS.gene59219 | MS.gene76042 | PPI |
| MS.gene59219 | MS.gene60684 | PPI |
| MS.gene006168 | MS.gene59219 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59219.t1 | MTR_1g098700 | 95.545 | 404 | 18 | 0 | 1 | 404 | 1 | 404 | 0.0 | 808 |
| MS.gene59219.t1 | MTR_6g037000 | 62.250 | 400 | 121 | 4 | 3 | 399 | 4 | 376 | 7.09e-179 | 503 |
| MS.gene59219.t1 | MTR_6g036920 | 62.095 | 401 | 122 | 4 | 3 | 400 | 4 | 377 | 9.07e-170 | 480 |
| MS.gene59219.t1 | MTR_6g037010 | 56.250 | 368 | 111 | 2 | 32 | 399 | 1 | 318 | 3.16e-142 | 408 |
| MS.gene59219.t1 | MTR_4g094375 | 54.074 | 405 | 163 | 4 | 1 | 400 | 1 | 387 | 2.44e-140 | 406 |
| MS.gene59219.t1 | MTR_8g098895 | 42.927 | 410 | 191 | 11 | 2 | 399 | 3 | 381 | 6.73e-90 | 277 |
| MS.gene59219.t1 | MTR_6g037060 | 59.483 | 232 | 64 | 4 | 3 | 231 | 4 | 208 | 1.43e-84 | 257 |
| MS.gene59219.t1 | MTR_6g036980 | 62.893 | 159 | 56 | 1 | 32 | 187 | 1 | 159 | 9.64e-65 | 204 |
| MS.gene59219.t1 | MTR_6g037070 | 67.939 | 131 | 41 | 1 | 271 | 400 | 1 | 131 | 1.24e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59219.t1 | AT1G18740 | 59.854 | 411 | 124 | 7 | 1 | 399 | 1 | 382 | 5.28e-173 | 488 |
| MS.gene59219.t1 | AT1G74450 | 58.629 | 423 | 132 | 7 | 1 | 406 | 1 | 397 | 3.07e-166 | 472 |
| MS.gene59219.t1 | AT1G43630 | 56.691 | 411 | 144 | 8 | 6 | 406 | 27 | 413 | 2.31e-161 | 460 |
| MS.gene59219.t1 | AT1G63930 | 37.150 | 428 | 213 | 12 | 2 | 399 | 3 | 404 | 8.64e-93 | 285 |
| MS.gene59219.t1 | AT4G11300 | 35.468 | 406 | 215 | 12 | 2 | 399 | 3 | 369 | 8.71e-68 | 219 |
| MS.gene59219.t1 | AT4G23530 | 37.621 | 412 | 207 | 13 | 3 | 394 | 4 | 385 | 1.29e-60 | 201 |
Find 100 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTTCTCCTCAGTTAA+TGG | 0.103360 | 1.3:+67865071 | None:intergenic |
| CCTTCATCGTTAACAAATTT+TGG | 0.118674 | 1.3:-67866079 | MS.gene59219:CDS |
| ATTCTTCCTTTCGCGCTTCT+TGG | 0.234533 | 1.3:+67865175 | None:intergenic |
| ACCTATCAACATCGGTCTTT+GGG | 0.264790 | 1.3:-67865485 | MS.gene59219:CDS |
| CGTGGAGTGTTTCTCGTACT+TGG | 0.273934 | 1.3:-67865445 | MS.gene59219:CDS |
| CACCTATCAACATCGGTCTT+TGG | 0.290128 | 1.3:-67865486 | MS.gene59219:CDS |
| ATGAATTGCTTTCACTCAAA+TGG | 0.307901 | 1.3:-67865928 | MS.gene59219:CDS |
| GAAGGATGGGCTTGATCCCT+TGG | 0.336411 | 1.3:-67865000 | MS.gene59219:CDS |
| TCCAAGAGCAAATGATCTTA+TGG | 0.351747 | 1.3:-67865378 | MS.gene59219:CDS |
| ATAGCCCAAGTGTAACTTCT+TGG | 0.363666 | 1.3:+67865236 | None:intergenic |
| GCAGGTTGTCAGACCACCTT+TGG | 0.368006 | 1.3:-67865834 | MS.gene59219:CDS |
| GTCTGTTTATATCATGAATT+CGG | 0.368410 | 1.3:-67865336 | MS.gene59219:CDS |
| GCTAGACAGCTCCAAGCAAT+TGG | 0.379594 | 1.3:-67865416 | MS.gene59219:CDS |
| CAAATGCTTCTATTGCTCAT+AGG | 0.383256 | 1.3:-67865592 | MS.gene59219:CDS |
| ACAAGTTACTCAGCATTGTT+TGG | 0.391925 | 1.3:+67864906 | None:intergenic |
| TGCTTTCACTCAAATGGGTT+GGG | 0.405982 | 1.3:-67865922 | MS.gene59219:CDS |
| CGGTCTTGTTGTTTGTTATG+TGG | 0.416918 | 1.3:-67865316 | MS.gene59219:CDS |
| TCTAAGCTTTCGTCGTGAAC+AGG | 0.420508 | 1.3:-67866047 | MS.gene59219:CDS |
| AAAAGTTTGTGATGCTTTGA+AGG | 0.422996 | 1.3:-67865018 | MS.gene59219:CDS |
| GCTCATAGGAATCGATCATT+TGG | 0.426557 | 1.3:-67865578 | MS.gene59219:CDS |
| TGAACGGAGTGTGAAGGCTT+TGG | 0.427355 | 1.3:-67865789 | MS.gene59219:CDS |
| GCCATAAGATCATTTGCTCT+TGG | 0.428544 | 1.3:+67865377 | None:intergenic |
| GATGAGTGATTTGGCTGATT+CGG | 0.429315 | 1.3:-67865102 | MS.gene59219:CDS |
| CCAAAATTTGTTAACGATGA+AGG | 0.429552 | 1.3:+67866079 | None:intergenic |
| ATTCAATCCACGGTCTTGGC+AGG | 0.444612 | 1.3:+67865274 | None:intergenic |
| ATAAGATCATTTGCTCTTGG+AGG | 0.449559 | 1.3:+67865380 | None:intergenic |
| AATGATCTTATGGCAACTAA+TGG | 0.450052 | 1.3:-67865368 | MS.gene59219:CDS |
| TAATGTTGTTCCCAATTGCT+TGG | 0.452399 | 1.3:+67865405 | None:intergenic |
| TCGTGAACAGGTTCATTCAA+TGG | 0.455511 | 1.3:-67866035 | MS.gene59219:CDS |
| GCACATTCAATCCACGGTCT+TGG | 0.461101 | 1.3:+67865270 | None:intergenic |
| TTGCTTTCACTCAAATGGGT+TGG | 0.470637 | 1.3:-67865923 | MS.gene59219:CDS |
| CCATTAACTGAGGAGAAAGA+AGG | 0.471352 | 1.3:-67865071 | MS.gene59219:CDS |
| TAGTTTGCTTGATGATGGTA+AGG | 0.477116 | 1.3:-67865618 | MS.gene59219:CDS |
| GGTCTTGTTGTTTGTTATGT+GGG | 0.477920 | 1.3:-67865315 | MS.gene59219:CDS |
| GGAGATTGTTCTTTATGCAT+TGG | 0.478527 | 1.3:-67865708 | MS.gene59219:CDS |
| ACAGAAGGGCTTGATTCTCT+TGG | 0.480056 | 1.3:-67864933 | MS.gene59219:CDS |
| ATCCCTTGGAGCGACAGGTA+AGG | 0.481679 | 1.3:-67864986 | MS.gene59219:CDS |
| TCAATTAGTTTGCTTGATGA+TGG | 0.481840 | 1.3:-67865623 | MS.gene59219:CDS |
| CCCCAAAGACCGATGTTGAT+AGG | 0.490236 | 1.3:+67865484 | None:intergenic |
| TGAATTGCTTTCACTCAAAT+GGG | 0.491553 | 1.3:-67865927 | MS.gene59219:CDS |
| CACACTCCGTTCAAAATACT+CGG | 0.497877 | 1.3:+67865799 | None:intergenic |
| GCGTTGAACAGATTCGTGTT+TGG | 0.499782 | 1.3:-67865742 | MS.gene59219:CDS |
| TGTTAGGGTGATGAGTGATT+TGG | 0.500530 | 1.3:-67865111 | MS.gene59219:CDS |
| TTCAATGGAAGGTTCAACCT+TGG | 0.503837 | 1.3:-67866020 | MS.gene59219:CDS |
| CAGACCACCTTTGGATCGAA+TGG | 0.504656 | 1.3:-67865825 | MS.gene59219:CDS |
| CTAGACAGCTCCAAGCAATT+GGG | 0.505291 | 1.3:-67865415 | MS.gene59219:CDS |
| GCTTGATCCCTTGGAGCGAC+AGG | 0.506665 | 1.3:-67864991 | MS.gene59219:CDS |
| TAAACTCCTCTTGACAAATG+AGG | 0.508909 | 1.3:+67865882 | None:intergenic |
| TCCCTTGGAGCGACAGGTAA+GGG | 0.514106 | 1.3:-67864985 | MS.gene59219:CDS |
| GGCAATTTAGATCACTTTCG+TGG | 0.514581 | 1.3:-67865463 | MS.gene59219:CDS |
| GCATTCCAAGAAGTTACACT+TGG | 0.514625 | 1.3:-67865241 | MS.gene59219:CDS |
| TTGGATCATCAGAGGAGTAT+TGG | 0.515295 | 1.3:-67865689 | MS.gene59219:CDS |
| TTCCCTTACCTGTCGCTCCA+AGG | 0.520164 | 1.3:+67864983 | None:intergenic |
| CATTAACTGAGGAGAAAGAA+GGG | 0.525206 | 1.3:-67865070 | MS.gene59219:CDS |
| CCCTTTGTGAGTATGAAGAA+TGG | 0.526236 | 1.3:+67865856 | None:intergenic |
| AGGAGTCCAAGAAGCGCGAA+AGG | 0.529552 | 1.3:-67865181 | MS.gene59219:CDS |
| CGATCATTTGGTCGTAGCAA+TGG | 0.535372 | 1.3:-67865566 | MS.gene59219:CDS |
| TCGTGTTTGGCAGAAGCTGT+TGG | 0.535925 | 1.3:-67865729 | MS.gene59219:CDS |
| GTTTGTGATGCTTTGAAGGA+TGG | 0.538717 | 1.3:-67865014 | MS.gene59219:CDS |
| TTGCTTCCTCATTTGTCAAG+AGG | 0.544215 | 1.3:-67865888 | MS.gene59219:CDS |
| GTTTGTTATGTGGGCTCTTG+TGG | 0.547659 | 1.3:-67865306 | MS.gene59219:CDS |
| TCCCTTACCTGTCGCTCCAA+GGG | 0.547819 | 1.3:+67864984 | None:intergenic |
| CTGTTCAACGCCGTCACGAA+TGG | 0.550491 | 1.3:+67865754 | None:intergenic |
| TTTGTGATGCTTTGAAGGAT+GGG | 0.551111 | 1.3:-67865013 | MS.gene59219:CDS |
| TCTTCATACTCACAAAGGGC+AGG | 0.563122 | 1.3:-67865852 | MS.gene59219:CDS |
| CCATTCTTCATACTCACAAA+GGG | 0.564572 | 1.3:-67865856 | MS.gene59219:CDS |
| GAACAGGTTCATTCAATGGA+AGG | 0.566303 | 1.3:-67866031 | MS.gene59219:CDS |
| ATGCCCGCTACGGACTATCA+AGG | 0.570752 | 1.3:-67866109 | MS.gene59219:CDS |
| GCCATTCTTCATACTCACAA+AGG | 0.575268 | 1.3:-67865857 | MS.gene59219:CDS |
| GAACCTTGATAGTCCGTAGC+GGG | 0.577431 | 1.3:+67866106 | None:intergenic |
| TTCAATCCACGGTCTTGGCA+GGG | 0.582419 | 1.3:+67865275 | None:intergenic |
| AGTGAAAGCAATTCATCATG+AGG | 0.582569 | 1.3:+67865935 | None:intergenic |
| TTATGTGAGAATGCCCGCTA+CGG | 0.587733 | 1.3:-67866119 | None:intergenic |
| AAGGGCTTGATTCTCTTGGT+AGG | 0.590533 | 1.3:-67864929 | MS.gene59219:CDS |
| CTCTCGTGGAGTGAGAGCAA+TGG | 0.595839 | 1.3:+67865212 | None:intergenic |
| GTTTGTAACGCCATTCGTGA+CGG | 0.597336 | 1.3:-67865764 | MS.gene59219:CDS |
| CCTATCAACATCGGTCTTTG+GGG | 0.598980 | 1.3:-67865484 | MS.gene59219:CDS |
| TTTATGCATTGGATCATCAG+AGG | 0.599987 | 1.3:-67865697 | MS.gene59219:CDS |
| TGAATCAAGCTCAATCTCCA+AGG | 0.602258 | 1.3:+67866003 | None:intergenic |
| ACTCCTCTGTGATCCTCTCG+TGG | 0.605117 | 1.3:+67865198 | None:intergenic |
| CATTGCTCTCACTCCACGAG+AGG | 0.610865 | 1.3:-67865211 | MS.gene59219:CDS |
| CGCGAAAGGAAGAATGCTTG+TGG | 0.612564 | 1.3:-67865167 | MS.gene59219:CDS |
| ATTGTGCGCAGCAAAACAGA+AGG | 0.614973 | 1.3:-67864948 | MS.gene59219:CDS |
| TCGGAAACCATTCGATCCAA+AGG | 0.615554 | 1.3:+67865818 | None:intergenic |
| GCAATTCCCTGCCAAGACCG+TGG | 0.616147 | 1.3:-67865281 | MS.gene59219:CDS |
| ACGGTCTTGGCAGGGAATTG+CGG | 0.626719 | 1.3:+67865283 | None:intergenic |
| GACGAAAGCTTAGAATTGAA+CGG | 0.631479 | 1.3:+67866056 | None:intergenic |
| GGCGCACTTTCCATTAACTG+AGG | 0.638557 | 1.3:-67865081 | MS.gene59219:CDS |
| TGAAATGCACATTCAATCCA+CGG | 0.640211 | 1.3:+67865264 | None:intergenic |
| TTGTGCGCAGCAAAACAGAA+GGG | 0.653368 | 1.3:-67864947 | MS.gene59219:CDS |
| GAAACCATTCGATCCAAAGG+TGG | 0.656279 | 1.3:+67865821 | None:intergenic |
| ATTAACTGAGGAGAAAGAAG+GGG | 0.656511 | 1.3:-67865069 | MS.gene59219:CDS |
| CATTCCAAGAAGTTACACTT+GGG | 0.659636 | 1.3:-67865240 | MS.gene59219:CDS |
| CATCAGAGGAGTATTGGTGA+AGG | 0.661798 | 1.3:-67865683 | MS.gene59219:CDS |
| GATAAAGATCAGCATCAACA+TGG | 0.662609 | 1.3:-67865536 | MS.gene59219:CDS |
| TCATTTGGTCGTAGCAATGG+TGG | 0.670155 | 1.3:-67865563 | MS.gene59219:CDS |
| AGTTAGACAGAGAGTTCACG+AGG | 0.670722 | 1.3:-67865045 | MS.gene59219:CDS |
| GCAATAACACCTATCAACAT+CGG | 0.671842 | 1.3:-67865493 | MS.gene59219:CDS |
| CGAACCTTGATAGTCCGTAG+CGG | 0.776669 | 1.3:+67866105 | None:intergenic |
| ACTCCACGAGAGGATCACAG+AGG | 0.822423 | 1.3:-67865201 | MS.gene59219:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTGAAAAATGTGTT+AGG | - | chr1.3:67865893-67865912 | MS.gene59219:CDS | 20.0% |
| !! | ACAAATTGAAAAATGTGTTA+GGG | - | chr1.3:67865894-67865913 | MS.gene59219:CDS | 20.0% |
| ! | GTCTGTTTATATCATGAATT+CGG | - | chr1.3:67865684-67865703 | MS.gene59219:CDS | 25.0% |
| AAAAGTTTGTGATGCTTTGA+AGG | - | chr1.3:67866002-67866021 | MS.gene59219:CDS | 30.0% | |
| AATGATCTTATGGCAACTAA+TGG | - | chr1.3:67865652-67865671 | MS.gene59219:CDS | 30.0% | |
| ATGAATTGCTTTCACTCAAA+TGG | - | chr1.3:67865092-67865111 | MS.gene59219:CDS | 30.0% | |
| TGAATTGCTTTCACTCAAAT+GGG | - | chr1.3:67865093-67865112 | MS.gene59219:CDS | 30.0% | |
| ! | CCTTCATCGTTAACAAATTT+TGG | - | chr1.3:67864941-67864960 | MS.gene59219:CDS | 30.0% |
| !! | CCAAAATTTGTTAACGATGA+AGG | + | chr1.3:67864944-67864963 | None:intergenic | 30.0% |
| !! | TCAATTAGTTTGCTTGATGA+TGG | - | chr1.3:67865397-67865416 | MS.gene59219:CDS | 30.0% |
| AGTGAAAGCAATTCATCATG+AGG | + | chr1.3:67865088-67865107 | None:intergenic | 35.0% | |
| ATAAGATCATTTGCTCTTGG+AGG | + | chr1.3:67865643-67865662 | None:intergenic | 35.0% | |
| ATTAACTGAGGAGAAAGAAG+GGG | - | chr1.3:67865951-67865970 | MS.gene59219:CDS | 35.0% | |
| CAAATGCTTCTATTGCTCAT+AGG | - | chr1.3:67865428-67865447 | MS.gene59219:CDS | 35.0% | |
| CATTAACTGAGGAGAAAGAA+GGG | - | chr1.3:67865950-67865969 | MS.gene59219:CDS | 35.0% | |
| CATTCCAAGAAGTTACACTT+GGG | - | chr1.3:67865780-67865799 | MS.gene59219:CDS | 35.0% | |
| CCATTCTTCATACTCACAAA+GGG | - | chr1.3:67865164-67865183 | MS.gene59219:CDS | 35.0% | |
| GACGAAAGCTTAGAATTGAA+CGG | + | chr1.3:67864967-67864986 | None:intergenic | 35.0% | |
| GATAAAGATCAGCATCAACA+TGG | - | chr1.3:67865484-67865503 | MS.gene59219:CDS | 35.0% | |
| GCAATAACACCTATCAACAT+CGG | - | chr1.3:67865527-67865546 | MS.gene59219:CDS | 35.0% | |
| GGAGATTGTTCTTTATGCAT+TGG | - | chr1.3:67865312-67865331 | MS.gene59219:CDS | 35.0% | |
| TAAACTCCTCTTGACAAATG+AGG | + | chr1.3:67865141-67865160 | None:intergenic | 35.0% | |
| TAATGTTGTTCCCAATTGCT+TGG | + | chr1.3:67865618-67865637 | None:intergenic | 35.0% | |
| TCCAAGAGCAAATGATCTTA+TGG | - | chr1.3:67865642-67865661 | MS.gene59219:CDS | 35.0% | |
| TGAAATGCACATTCAATCCA+CGG | + | chr1.3:67865759-67865778 | None:intergenic | 35.0% | |
| TTTATGCATTGGATCATCAG+AGG | - | chr1.3:67865323-67865342 | MS.gene59219:CDS | 35.0% | |
| !! | GGTCTTGTTGTTTGTTATGT+GGG | - | chr1.3:67865705-67865724 | MS.gene59219:CDS | 35.0% |
| !! | TAGTTTGCTTGATGATGGTA+AGG | - | chr1.3:67865402-67865421 | MS.gene59219:CDS | 35.0% |
| !! | TGGTTTCCGAGTATTTTGAA+CGG | - | chr1.3:67865215-67865234 | MS.gene59219:CDS | 35.0% |
| !! | TTTGTGATGCTTTGAAGGAT+GGG | - | chr1.3:67866007-67866026 | MS.gene59219:CDS | 35.0% |
| ACCTATCAACATCGGTCTTT+GGG | - | chr1.3:67865535-67865554 | MS.gene59219:CDS | 40.0% | |
| ATAGCCCAAGTGTAACTTCT+TGG | + | chr1.3:67865787-67865806 | None:intergenic | 40.0% | |
| CACACTCCGTTCAAAATACT+CGG | + | chr1.3:67865224-67865243 | None:intergenic | 40.0% | |
| CCATTAACTGAGGAGAAAGA+AGG | - | chr1.3:67865949-67865968 | MS.gene59219:CDS | 40.0% | |
| CCCTTTGTGAGTATGAAGAA+TGG | + | chr1.3:67865167-67865186 | None:intergenic | 40.0% | |
| CCTTCTTTCTCCTCAGTTAA+TGG | + | chr1.3:67865952-67865971 | None:intergenic | 40.0% | |
| GAACAGGTTCATTCAATGGA+AGG | - | chr1.3:67864989-67865008 | MS.gene59219:CDS | 40.0% | |
| GCATTCCAAGAAGTTACACT+TGG | - | chr1.3:67865779-67865798 | MS.gene59219:CDS | 40.0% | |
| GCCATAAGATCATTTGCTCT+TGG | + | chr1.3:67865646-67865665 | None:intergenic | 40.0% | |
| GCCATTCTTCATACTCACAA+AGG | - | chr1.3:67865163-67865182 | MS.gene59219:CDS | 40.0% | |
| GCTCATAGGAATCGATCATT+TGG | - | chr1.3:67865442-67865461 | MS.gene59219:CDS | 40.0% | |
| GGCAATTTAGATCACTTTCG+TGG | - | chr1.3:67865557-67865576 | MS.gene59219:CDS | 40.0% | |
| TCGTGAACAGGTTCATTCAA+TGG | - | chr1.3:67864985-67865004 | MS.gene59219:CDS | 40.0% | |
| TGAATCAAGCTCAATCTCCA+AGG | + | chr1.3:67865020-67865039 | None:intergenic | 40.0% | |
| TGTTAGGGTGATGAGTGATT+TGG | - | chr1.3:67865909-67865928 | MS.gene59219:CDS | 40.0% | |
| TTCAATGGAAGGTTCAACCT+TGG | - | chr1.3:67865000-67865019 | MS.gene59219:CDS | 40.0% | |
| TTGCTTCCTCATTTGTCAAG+AGG | - | chr1.3:67865132-67865151 | MS.gene59219:CDS | 40.0% | |
| TTGCTTTCACTCAAATGGGT+TGG | - | chr1.3:67865097-67865116 | MS.gene59219:CDS | 40.0% | |
| ! | GATGAGTGATTTGGCTGATT+CGG | - | chr1.3:67865918-67865937 | MS.gene59219:CDS | 40.0% |
| ! | TGCTTTCACTCAAATGGGTT+GGG | - | chr1.3:67865098-67865117 | MS.gene59219:CDS | 40.0% |
| ! | TTGGATCATCAGAGGAGTAT+TGG | - | chr1.3:67865331-67865350 | MS.gene59219:CDS | 40.0% |
| ! | TTTTGCTGCGCACAATTCTA+TGG | + | chr1.3:67866068-67866087 | None:intergenic | 40.0% |
| !! | CGGTCTTGTTGTTTGTTATG+TGG | - | chr1.3:67865704-67865723 | MS.gene59219:CDS | 40.0% |
| !! | GTATTTTGAACGGAGTGTGA+AGG | - | chr1.3:67865225-67865244 | MS.gene59219:CDS | 40.0% |
| !! | GTTTGTGATGCTTTGAAGGA+TGG | - | chr1.3:67866006-67866025 | MS.gene59219:CDS | 40.0% |
| AAGGGCTTGATTCTCTTGGT+AGG | - | chr1.3:67866091-67866110 | MS.gene59219:CDS | 45.0% | |
| ACAGAAGGGCTTGATTCTCT+TGG | - | chr1.3:67866087-67866106 | MS.gene59219:CDS | 45.0% | |
| AGTTAGACAGAGAGTTCACG+AGG | - | chr1.3:67865975-67865994 | MS.gene59219:CDS | 45.0% | |
| ATTCTTCCTTTCGCGCTTCT+TGG | + | chr1.3:67865848-67865867 | None:intergenic | 45.0% | |
| ATTGTGCGCAGCAAAACAGA+AGG | - | chr1.3:67866072-67866091 | MS.gene59219:CDS | 45.0% | |
| CACCTATCAACATCGGTCTT+TGG | - | chr1.3:67865534-67865553 | MS.gene59219:CDS | 45.0% | |
| CCTATCAACATCGGTCTTTG+GGG | - | chr1.3:67865536-67865555 | MS.gene59219:CDS | 45.0% | |
| CGATCATTTGGTCGTAGCAA+TGG | - | chr1.3:67865454-67865473 | MS.gene59219:CDS | 45.0% | |
| CTAGACAGCTCCAAGCAATT+GGG | - | chr1.3:67865605-67865624 | MS.gene59219:CDS | 45.0% | |
| GAAACCATTCGATCCAAAGG+TGG | + | chr1.3:67865202-67865221 | None:intergenic | 45.0% | |
| GCGTTGAACAGATTCGTGTT+TGG | - | chr1.3:67865278-67865297 | MS.gene59219:CDS | 45.0% | |
| GTTTGTAACGCCATTCGTGA+CGG | - | chr1.3:67865256-67865275 | MS.gene59219:CDS | 45.0% | |
| TCATTTGGTCGTAGCAATGG+TGG | - | chr1.3:67865457-67865476 | MS.gene59219:CDS | 45.0% | |
| TCGGAAACCATTCGATCCAA+AGG | + | chr1.3:67865205-67865224 | None:intergenic | 45.0% | |
| TCTAAGCTTTCGTCGTGAAC+AGG | - | chr1.3:67864973-67864992 | MS.gene59219:CDS | 45.0% | |
| TCTTCATACTCACAAAGGGC+AGG | - | chr1.3:67865168-67865187 | MS.gene59219:CDS | 45.0% | |
| TTGTGCGCAGCAAAACAGAA+GGG | - | chr1.3:67866073-67866092 | MS.gene59219:CDS | 45.0% | |
| !! | CATCAGAGGAGTATTGGTGA+AGG | - | chr1.3:67865337-67865356 | MS.gene59219:CDS | 45.0% |
| !! | GTTTGTTATGTGGGCTCTTG+TGG | - | chr1.3:67865714-67865733 | MS.gene59219:CDS | 45.0% |
| ATTCAATCCACGGTCTTGGC+AGG | + | chr1.3:67865749-67865768 | None:intergenic | 50.0% | |
| CAGACCACCTTTGGATCGAA+TGG | - | chr1.3:67865195-67865214 | MS.gene59219:CDS | 50.0% | |
| CCCCAAAGACCGATGTTGAT+AGG | + | chr1.3:67865539-67865558 | None:intergenic | 50.0% | |
| CGCGAAAGGAAGAATGCTTG+TGG | - | chr1.3:67865853-67865872 | MS.gene59219:CDS | 50.0% | |
| GCACATTCAATCCACGGTCT+TGG | + | chr1.3:67865753-67865772 | None:intergenic | 50.0% | |
| GCTAGACAGCTCCAAGCAAT+TGG | - | chr1.3:67865604-67865623 | MS.gene59219:CDS | 50.0% | |
| GGCGCACTTTCCATTAACTG+AGG | - | chr1.3:67865939-67865958 | MS.gene59219:CDS | 50.0% | |
| TCGTGTTTGGCAGAAGCTGT+TGG | - | chr1.3:67865291-67865310 | MS.gene59219:CDS | 50.0% | |
| TGAACGGAGTGTGAAGGCTT+TGG | - | chr1.3:67865231-67865250 | MS.gene59219:CDS | 50.0% | |
| TTCAATCCACGGTCTTGGCA+GGG | + | chr1.3:67865748-67865767 | None:intergenic | 50.0% | |
| ! | CGAACCTTGATAGTCCGTAG+CGG | + | chr1.3:67864918-67864937 | None:intergenic | 50.0% |
| ! | CGTGGAGTGTTTCTCGTACT+TGG | - | chr1.3:67865575-67865594 | MS.gene59219:CDS | 50.0% |
| ! | GAACCTTGATAGTCCGTAGC+GGG | + | chr1.3:67864917-67864936 | None:intergenic | 50.0% |
| ACGGTCTTGGCAGGGAATTG+CGG | + | chr1.3:67865740-67865759 | None:intergenic | 55.0% | |
| ACTCCACGAGAGGATCACAG+AGG | - | chr1.3:67865819-67865838 | MS.gene59219:CDS | 55.0% | |
| ACTCCTCTGTGATCCTCTCG+TGG | + | chr1.3:67865825-67865844 | None:intergenic | 55.0% | |
| ATCCCTTGGAGCGACAGGTA+AGG | - | chr1.3:67866034-67866053 | MS.gene59219:CDS | 55.0% | |
| CATTGCTCTCACTCCACGAG+AGG | - | chr1.3:67865809-67865828 | MS.gene59219:CDS | 55.0% | |
| CTCTCGTGGAGTGAGAGCAA+TGG | + | chr1.3:67865811-67865830 | None:intergenic | 55.0% | |
| CTGTTCAACGCCGTCACGAA+TGG | + | chr1.3:67865269-67865288 | None:intergenic | 55.0% | |
| GCAGGTTGTCAGACCACCTT+TGG | - | chr1.3:67865186-67865205 | MS.gene59219:CDS | 55.0% | |
| TCCCTTACCTGTCGCTCCAA+GGG | + | chr1.3:67866039-67866058 | None:intergenic | 55.0% | |
| TCCCTTGGAGCGACAGGTAA+GGG | - | chr1.3:67866035-67866054 | MS.gene59219:CDS | 55.0% | |
| TTCCCTTACCTGTCGCTCCA+AGG | + | chr1.3:67866040-67866059 | None:intergenic | 55.0% | |
| ! | AGGAGTCCAAGAAGCGCGAA+AGG | - | chr1.3:67865839-67865858 | MS.gene59219:CDS | 55.0% |
| ! | ATGCCCGCTACGGACTATCA+AGG | - | chr1.3:67864911-67864930 | MS.gene59219:CDS | 55.0% |
| ! | GAAGGATGGGCTTGATCCCT+TGG | - | chr1.3:67866020-67866039 | MS.gene59219:CDS | 55.0% |
| GCAATTCCCTGCCAAGACCG+TGG | - | chr1.3:67865739-67865758 | MS.gene59219:CDS | 60.0% | |
| GCTTGATCCCTTGGAGCGAC+AGG | - | chr1.3:67866029-67866048 | MS.gene59219:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 67864911 | 67866131 | 67864911 | ID=MS.gene59219 |
| chr1.3 | mRNA | 67864911 | 67866131 | 67864911 | ID=MS.gene59219.t1;Parent=MS.gene59219 |
| chr1.3 | exon | 67864911 | 67866131 | 67864911 | ID=MS.gene59219.t1.exon1;Parent=MS.gene59219.t1 |
| chr1.3 | CDS | 67864911 | 67866131 | 67864911 | ID=cds.MS.gene59219.t1;Parent=MS.gene59219.t1 |
| Gene Sequence |
| Protein sequence |
