Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60684.t1 | XP_003592100.1 | 96.3 | 404 | 15 | 0 | 1 | 404 | 1 | 404 | 1.30E-196 | 695.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60684.t1 | G7IBZ7 | 96.3 | 404 | 15 | 0 | 1 | 404 | 1 | 404 | 9.5e-197 | 695.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006168 | MS.gene60684 | PPI |
| MS.gene59219 | MS.gene60684 | PPI |
| MS.gene60684 | MS.gene76042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60684.t1 | MTR_1g098700 | 95.545 | 404 | 18 | 0 | 1 | 404 | 1 | 404 | 0.0 | 808 |
| MS.gene60684.t1 | MTR_6g037000 | 62.250 | 400 | 121 | 4 | 3 | 399 | 4 | 376 | 7.09e-179 | 503 |
| MS.gene60684.t1 | MTR_6g036920 | 62.095 | 401 | 122 | 4 | 3 | 400 | 4 | 377 | 9.07e-170 | 480 |
| MS.gene60684.t1 | MTR_6g037010 | 56.250 | 368 | 111 | 2 | 32 | 399 | 1 | 318 | 3.16e-142 | 408 |
| MS.gene60684.t1 | MTR_4g094375 | 54.074 | 405 | 163 | 4 | 1 | 400 | 1 | 387 | 2.44e-140 | 406 |
| MS.gene60684.t1 | MTR_8g098895 | 42.927 | 410 | 191 | 11 | 2 | 399 | 3 | 381 | 6.73e-90 | 277 |
| MS.gene60684.t1 | MTR_6g037060 | 59.483 | 232 | 64 | 4 | 3 | 231 | 4 | 208 | 1.43e-84 | 257 |
| MS.gene60684.t1 | MTR_6g036980 | 62.893 | 159 | 56 | 1 | 32 | 187 | 1 | 159 | 9.64e-65 | 204 |
| MS.gene60684.t1 | MTR_6g037070 | 67.939 | 131 | 41 | 1 | 271 | 400 | 1 | 131 | 1.24e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60684.t1 | AT1G18740 | 59.854 | 411 | 124 | 7 | 1 | 399 | 1 | 382 | 5.28e-173 | 488 |
| MS.gene60684.t1 | AT1G74450 | 58.629 | 423 | 132 | 7 | 1 | 406 | 1 | 397 | 3.07e-166 | 472 |
| MS.gene60684.t1 | AT1G43630 | 56.691 | 411 | 144 | 8 | 6 | 406 | 27 | 413 | 2.31e-161 | 460 |
| MS.gene60684.t1 | AT1G63930 | 37.150 | 428 | 213 | 12 | 2 | 399 | 3 | 404 | 8.64e-93 | 285 |
| MS.gene60684.t1 | AT4G11300 | 35.468 | 406 | 215 | 12 | 2 | 399 | 3 | 369 | 8.71e-68 | 219 |
| MS.gene60684.t1 | AT4G23530 | 37.621 | 412 | 207 | 13 | 3 | 394 | 4 | 385 | 1.29e-60 | 201 |
Find 100 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCTTCTCCTCAGTTAA+TGG | 0.102655 | 1.2:-70753814 | None:intergenic |
| CCTTCATCGTTAACAAATTT+TGG | 0.118674 | 1.2:+70752806 | MS.gene60684:CDS |
| ATTCTTCCTTTCGCGCTTCT+TGG | 0.234533 | 1.2:-70753710 | None:intergenic |
| ACCTATCAACATCGGTCTTT+GGG | 0.264790 | 1.2:+70753400 | MS.gene60684:CDS |
| CGTGGAGTGTTTCTCGTACT+TGG | 0.273934 | 1.2:+70753440 | MS.gene60684:CDS |
| CACCTATCAACATCGGTCTT+TGG | 0.290128 | 1.2:+70753399 | MS.gene60684:CDS |
| ATGAATTGCTTTCACTCAAA+TGG | 0.307901 | 1.2:+70752957 | MS.gene60684:CDS |
| TCCAAGAGCAAATGATCTTA+TGG | 0.351747 | 1.2:+70753507 | MS.gene60684:CDS |
| GCAGGTTGTCAGACCACCTT+TGG | 0.368006 | 1.2:+70753051 | MS.gene60684:CDS |
| GAAGGACGGGCTTGATCCCT+TGG | 0.378338 | 1.2:+70753885 | MS.gene60684:CDS |
| GCTAGACAGCTCCAAGCAAT+TGG | 0.379594 | 1.2:+70753469 | MS.gene60684:CDS |
| CAAATGCTTCTATTGCTCAT+AGG | 0.383256 | 1.2:+70753293 | MS.gene60684:CDS |
| ACAAGTTACTCAGCATTGTT+TGG | 0.391925 | 1.2:-70753979 | None:intergenic |
| GTCTGTCTATATCATGAATT+CGG | 0.396800 | 1.2:+70753549 | MS.gene60684:CDS |
| AAAAGTTTGCGATGCTTTGA+AGG | 0.399604 | 1.2:+70753867 | MS.gene60684:CDS |
| TGCTTTCACTCAAATGGGTT+GGG | 0.405982 | 1.2:+70752963 | MS.gene60684:CDS |
| CGGTCTTGTTGTTTGTTATG+TGG | 0.416918 | 1.2:+70753569 | MS.gene60684:CDS |
| TCTAAGCTTTCGTCGTGAAC+AGG | 0.420508 | 1.2:+70752838 | MS.gene60684:CDS |
| GCTCATAGGAATCGATCATT+TGG | 0.426557 | 1.2:+70753307 | MS.gene60684:CDS |
| TGAACGGAGTGTGAAGGCTT+TGG | 0.427355 | 1.2:+70753096 | MS.gene60684:CDS |
| GCCATAAGATCATTTGCTCT+TGG | 0.428544 | 1.2:-70753508 | None:intergenic |
| GATGAGTGATTTGGCTGATT+CGG | 0.429315 | 1.2:+70753783 | MS.gene60684:CDS |
| CCAAAATTTGTTAACGATGA+AGG | 0.429552 | 1.2:-70752806 | None:intergenic |
| ATCCCTTGGAGCGACAAGTA+AGG | 0.444886 | 1.2:+70753899 | MS.gene60684:CDS |
| ATAAGATCATTTGCTCTTGG+AGG | 0.449559 | 1.2:-70753505 | None:intergenic |
| AATGATCTTATGGCAACTAA+TGG | 0.450052 | 1.2:+70753517 | MS.gene60684:CDS |
| TAATGTTGTTCCCAATTGCT+TGG | 0.452399 | 1.2:-70753480 | None:intergenic |
| TCGTGAACAGGTTCATTCAA+TGG | 0.455511 | 1.2:+70752850 | MS.gene60684:CDS |
| TTGCTTTCACTCAAATGGGT+TGG | 0.470637 | 1.2:+70752962 | MS.gene60684:CDS |
| TAGTTTGCTTGATGATGGTA+AGG | 0.477116 | 1.2:+70753267 | MS.gene60684:CDS |
| GGTCTTGTTGTTTGTTATGT+GGG | 0.477920 | 1.2:+70753570 | MS.gene60684:CDS |
| GGAGATTGTTCTTTATGCAT+TGG | 0.478527 | 1.2:+70753177 | MS.gene60684:CDS |
| ACAGAAGGGCTTGATTCTCT+TGG | 0.480056 | 1.2:+70753952 | MS.gene60684:CDS |
| TCAATTAGTTTGCTTGATGA+TGG | 0.481840 | 1.2:+70753262 | MS.gene60684:CDS |
| TTTGCGATGCTTTGAAGGAC+GGG | 0.490136 | 1.2:+70753872 | MS.gene60684:CDS |
| CCCCAAAGACCGATGTTGAT+AGG | 0.490236 | 1.2:-70753401 | None:intergenic |
| TGAATTGCTTTCACTCAAAT+GGG | 0.491553 | 1.2:+70752958 | MS.gene60684:CDS |
| CACACTCCGTTCAAAATACT+CGG | 0.497877 | 1.2:-70753086 | None:intergenic |
| GCGTTGAACAGATTCGTGTT+TGG | 0.499782 | 1.2:+70753143 | MS.gene60684:CDS |
| TGTTAGGGTGATGAGTGATT+TGG | 0.500530 | 1.2:+70753774 | MS.gene60684:CDS |
| TTCAATGGAAGGTTCAACCT+TGG | 0.503837 | 1.2:+70752865 | MS.gene60684:CDS |
| CAGACCACCTTTGGATCGAA+TGG | 0.504656 | 1.2:+70753060 | MS.gene60684:CDS |
| CTAGACAGCTCCAAGCAATT+GGG | 0.505291 | 1.2:+70753470 | MS.gene60684:CDS |
| TTCCCTTACTTGTCGCTCCA+AGG | 0.505348 | 1.2:-70753902 | None:intergenic |
| GCATTCCAAGGAGTTACACT+TGG | 0.507088 | 1.2:+70753644 | MS.gene60684:CDS |
| TAAACTCCTCTTGACAAATG+AGG | 0.508909 | 1.2:-70753003 | None:intergenic |
| GGCAATTTAGATCACTTTCG+TGG | 0.514581 | 1.2:+70753422 | MS.gene60684:CDS |
| TTGGATCATCAGAGGAGTAT+TGG | 0.515295 | 1.2:+70753196 | MS.gene60684:CDS |
| ATAGCCCAAGTGTAACTCCT+TGG | 0.520219 | 1.2:-70753649 | None:intergenic |
| GCACATTCAATCCACGGTCT+TGG | 0.521483 | 1.2:-70753615 | None:intergenic |
| CCATTAACTGAGGAGAAGGA+AGG | 0.525759 | 1.2:+70753814 | MS.gene60684:CDS |
| CCCTTTGTGAGTATGAAGAA+TGG | 0.526236 | 1.2:-70753029 | None:intergenic |
| CTTTCCATTAACTGAGGAGA+AGG | 0.533601 | 1.2:+70753810 | MS.gene60684:CDS |
| AGGAGTCCAAGAAGCGCGAA+AGG | 0.534184 | 1.2:+70753704 | MS.gene60684:CDS |
| CGATCATTTGGTCGTAGCAA+TGG | 0.535372 | 1.2:+70753319 | MS.gene60684:CDS |
| TCGTGTTTGGCAGAAGCTGT+TGG | 0.535925 | 1.2:+70753156 | MS.gene60684:CDS |
| TTGCTTCCTCATTTGTCAAG+AGG | 0.544215 | 1.2:+70752997 | MS.gene60684:CDS |
| GTTTGCGATGCTTTGAAGGA+CGG | 0.544895 | 1.2:+70753871 | MS.gene60684:CDS |
| GTTTGTTATGTGGGCTCTTG+TGG | 0.547659 | 1.2:+70753579 | MS.gene60684:CDS |
| TCCCTTACTTGTCGCTCCAA+GGG | 0.548636 | 1.2:-70753901 | None:intergenic |
| CTGTTCAACGCCGTCACGAA+TGG | 0.550491 | 1.2:-70753131 | None:intergenic |
| TCTTCATACTCACAAAGGGC+AGG | 0.563122 | 1.2:+70753033 | MS.gene60684:CDS |
| CCATTCTTCATACTCACAAA+GGG | 0.564572 | 1.2:+70753029 | MS.gene60684:CDS |
| GAACAGGTTCATTCAATGGA+AGG | 0.566303 | 1.2:+70752854 | MS.gene60684:CDS |
| TCCCTTGGAGCGACAAGTAA+GGG | 0.568368 | 1.2:+70753900 | MS.gene60684:CDS |
| ATGCCCGCTACGGACTATCA+AGG | 0.570752 | 1.2:+70752776 | MS.gene60684:CDS |
| ATGTGCATTTCAGCATTCCA+AGG | 0.573197 | 1.2:+70753632 | MS.gene60684:CDS |
| GCCATTCTTCATACTCACAA+AGG | 0.575268 | 1.2:+70753028 | MS.gene60684:CDS |
| GAACCTTGATAGTCCGTAGC+GGG | 0.577431 | 1.2:-70752779 | None:intergenic |
| CTCTCGTGAAGTGAGAGCAA+TGG | 0.580596 | 1.2:-70753673 | None:intergenic |
| AGTGAAAGCAATTCATCATG+AGG | 0.582569 | 1.2:-70752950 | None:intergenic |
| TTCAATCCACGGTCTTGGCA+CGG | 0.582967 | 1.2:-70753610 | None:intergenic |
| TTATGTGAGAATGCCCGCTA+CGG | 0.587733 | 1.2:+70752766 | None:intergenic |
| AAGGGCTTGATTCTCTTGGT+AGG | 0.590533 | 1.2:+70753956 | MS.gene60684:CDS |
| CATTAACTGAGGAGAAGGAA+GGG | 0.591111 | 1.2:+70753815 | MS.gene60684:CDS |
| GTTTGTAACGCCATTCGTGA+CGG | 0.597336 | 1.2:+70753121 | MS.gene60684:CDS |
| CCTATCAACATCGGTCTTTG+GGG | 0.598980 | 1.2:+70753401 | MS.gene60684:CDS |
| TTTATGCATTGGATCATCAG+AGG | 0.599987 | 1.2:+70753188 | MS.gene60684:CDS |
| TGAATCAAGCTCAATCTCCA+AGG | 0.602258 | 1.2:-70752882 | None:intergenic |
| CATTGCTCTCACTTCACGAG+AGG | 0.610519 | 1.2:+70753674 | MS.gene60684:CDS |
| ATTAACTGAGGAGAAGGAAG+GGG | 0.610972 | 1.2:+70753816 | MS.gene60684:CDS |
| CGCGAAAGGAAGAATGCTTG+TGG | 0.612564 | 1.2:+70753718 | MS.gene60684:CDS |
| ATTGTGCGCAGCAAAACAGA+AGG | 0.614973 | 1.2:+70753937 | MS.gene60684:CDS |
| TCGGAAACCATTCGATCCAA+AGG | 0.615554 | 1.2:-70753067 | None:intergenic |
| CTCACTTCACGAGAGGATCA+CGG | 0.621414 | 1.2:+70753681 | MS.gene60684:CDS |
| GACGAAAGCTTAGAATTGAA+CGG | 0.631479 | 1.2:-70752829 | None:intergenic |
| ACGGTCTTGGCACGGAATTG+CGG | 0.633402 | 1.2:-70753602 | None:intergenic |
| CATTCCAAGGAGTTACACTT+GGG | 0.634859 | 1.2:+70753645 | MS.gene60684:CDS |
| GCAATTCCGTGCCAAGACCG+TGG | 0.637524 | 1.2:+70753604 | MS.gene60684:CDS |
| GGCGCACTTTCCATTAACTG+AGG | 0.638557 | 1.2:+70753804 | MS.gene60684:CDS |
| TGAAATGCACATTCAATCCA+CGG | 0.640211 | 1.2:-70753621 | None:intergenic |
| TTGTGCGCAGCAAAACAGAA+GGG | 0.653368 | 1.2:+70753938 | MS.gene60684:CDS |
| GAAACCATTCGATCCAAAGG+TGG | 0.656279 | 1.2:-70753064 | None:intergenic |
| CATCAGAGGAGTATTGGTGA+AGG | 0.661798 | 1.2:+70753202 | MS.gene60684:CDS |
| GATAAAGATCAGCATCAACA+TGG | 0.662609 | 1.2:+70753349 | MS.gene60684:CDS |
| TCATTTGGTCGTAGCAATGG+TGG | 0.670155 | 1.2:+70753322 | MS.gene60684:CDS |
| AGTTAGACAGAGAGTTCACG+AGG | 0.670722 | 1.2:+70753840 | MS.gene60684:CDS |
| GCAATAACACCTATCAACAT+CGG | 0.671842 | 1.2:+70753392 | MS.gene60684:CDS |
| CGAACCTTGATAGTCCGTAG+CGG | 0.776669 | 1.2:-70752780 | None:intergenic |
| ACTTCACGAGAGGATCACGG+AGG | 0.833521 | 1.2:+70753684 | MS.gene60684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTGAAAAATGTGTT+AGG | + | chr1.2:70753758-70753777 | MS.gene60684:CDS | 20.0% |
| !! | ACAAATTGAAAAATGTGTTA+GGG | + | chr1.2:70753759-70753778 | MS.gene60684:CDS | 20.0% |
| AATGATCTTATGGCAACTAA+TGG | + | chr1.2:70753517-70753536 | MS.gene60684:CDS | 30.0% | |
| ATGAATTGCTTTCACTCAAA+TGG | + | chr1.2:70752957-70752976 | MS.gene60684:CDS | 30.0% | |
| GTCTGTCTATATCATGAATT+CGG | + | chr1.2:70753549-70753568 | MS.gene60684:CDS | 30.0% | |
| TGAATTGCTTTCACTCAAAT+GGG | + | chr1.2:70752958-70752977 | MS.gene60684:CDS | 30.0% | |
| ! | CCTTCATCGTTAACAAATTT+TGG | + | chr1.2:70752806-70752825 | MS.gene60684:CDS | 30.0% |
| !! | CCAAAATTTGTTAACGATGA+AGG | - | chr1.2:70752809-70752828 | None:intergenic | 30.0% |
| !! | TCAATTAGTTTGCTTGATGA+TGG | + | chr1.2:70753262-70753281 | MS.gene60684:CDS | 30.0% |
| AAAAGTTTGCGATGCTTTGA+AGG | + | chr1.2:70753867-70753886 | MS.gene60684:CDS | 35.0% | |
| AGTGAAAGCAATTCATCATG+AGG | - | chr1.2:70752953-70752972 | None:intergenic | 35.0% | |
| ATAAGATCATTTGCTCTTGG+AGG | - | chr1.2:70753508-70753527 | None:intergenic | 35.0% | |
| CAAATGCTTCTATTGCTCAT+AGG | + | chr1.2:70753293-70753312 | MS.gene60684:CDS | 35.0% | |
| CCATTCTTCATACTCACAAA+GGG | + | chr1.2:70753029-70753048 | MS.gene60684:CDS | 35.0% | |
| GACGAAAGCTTAGAATTGAA+CGG | - | chr1.2:70752832-70752851 | None:intergenic | 35.0% | |
| GATAAAGATCAGCATCAACA+TGG | + | chr1.2:70753349-70753368 | MS.gene60684:CDS | 35.0% | |
| GCAATAACACCTATCAACAT+CGG | + | chr1.2:70753392-70753411 | MS.gene60684:CDS | 35.0% | |
| GGAGATTGTTCTTTATGCAT+TGG | + | chr1.2:70753177-70753196 | MS.gene60684:CDS | 35.0% | |
| TAAACTCCTCTTGACAAATG+AGG | - | chr1.2:70753006-70753025 | None:intergenic | 35.0% | |
| TAATGTTGTTCCCAATTGCT+TGG | - | chr1.2:70753483-70753502 | None:intergenic | 35.0% | |
| TCCAAGAGCAAATGATCTTA+TGG | + | chr1.2:70753507-70753526 | MS.gene60684:CDS | 35.0% | |
| TGAAATGCACATTCAATCCA+CGG | - | chr1.2:70753624-70753643 | None:intergenic | 35.0% | |
| TTTATGCATTGGATCATCAG+AGG | + | chr1.2:70753188-70753207 | MS.gene60684:CDS | 35.0% | |
| !! | GGTCTTGTTGTTTGTTATGT+GGG | + | chr1.2:70753570-70753589 | MS.gene60684:CDS | 35.0% |
| !! | TAGTTTGCTTGATGATGGTA+AGG | + | chr1.2:70753267-70753286 | MS.gene60684:CDS | 35.0% |
| !! | TGGTTTCCGAGTATTTTGAA+CGG | + | chr1.2:70753080-70753099 | MS.gene60684:CDS | 35.0% |
| ACCTATCAACATCGGTCTTT+GGG | + | chr1.2:70753400-70753419 | MS.gene60684:CDS | 40.0% | |
| ATGTGCATTTCAGCATTCCA+AGG | + | chr1.2:70753632-70753651 | MS.gene60684:CDS | 40.0% | |
| ATTAACTGAGGAGAAGGAAG+GGG | + | chr1.2:70753816-70753835 | MS.gene60684:CDS | 40.0% | |
| CACACTCCGTTCAAAATACT+CGG | - | chr1.2:70753089-70753108 | None:intergenic | 40.0% | |
| CATTAACTGAGGAGAAGGAA+GGG | + | chr1.2:70753815-70753834 | MS.gene60684:CDS | 40.0% | |
| CATTCCAAGGAGTTACACTT+GGG | + | chr1.2:70753645-70753664 | MS.gene60684:CDS | 40.0% | |
| CCCTTTGTGAGTATGAAGAA+TGG | - | chr1.2:70753032-70753051 | None:intergenic | 40.0% | |
| CTTTCCATTAACTGAGGAGA+AGG | + | chr1.2:70753810-70753829 | MS.gene60684:CDS | 40.0% | |
| GAACAGGTTCATTCAATGGA+AGG | + | chr1.2:70752854-70752873 | MS.gene60684:CDS | 40.0% | |
| GCCATAAGATCATTTGCTCT+TGG | - | chr1.2:70753511-70753530 | None:intergenic | 40.0% | |
| GCCATTCTTCATACTCACAA+AGG | + | chr1.2:70753028-70753047 | MS.gene60684:CDS | 40.0% | |
| GCTCATAGGAATCGATCATT+TGG | + | chr1.2:70753307-70753326 | MS.gene60684:CDS | 40.0% | |
| GGCAATTTAGATCACTTTCG+TGG | + | chr1.2:70753422-70753441 | MS.gene60684:CDS | 40.0% | |
| TCGTGAACAGGTTCATTCAA+TGG | + | chr1.2:70752850-70752869 | MS.gene60684:CDS | 40.0% | |
| TGAATCAAGCTCAATCTCCA+AGG | - | chr1.2:70752885-70752904 | None:intergenic | 40.0% | |
| TGTTAGGGTGATGAGTGATT+TGG | + | chr1.2:70753774-70753793 | MS.gene60684:CDS | 40.0% | |
| TTCAATGGAAGGTTCAACCT+TGG | + | chr1.2:70752865-70752884 | MS.gene60684:CDS | 40.0% | |
| TTGCTTCCTCATTTGTCAAG+AGG | + | chr1.2:70752997-70753016 | MS.gene60684:CDS | 40.0% | |
| TTGCTTTCACTCAAATGGGT+TGG | + | chr1.2:70752962-70752981 | MS.gene60684:CDS | 40.0% | |
| ! | GATGAGTGATTTGGCTGATT+CGG | + | chr1.2:70753783-70753802 | MS.gene60684:CDS | 40.0% |
| ! | TGCTTTCACTCAAATGGGTT+GGG | + | chr1.2:70752963-70752982 | MS.gene60684:CDS | 40.0% |
| ! | TTGGATCATCAGAGGAGTAT+TGG | + | chr1.2:70753196-70753215 | MS.gene60684:CDS | 40.0% |
| ! | TTTTGCTGCGCACAATTCTA+TGG | - | chr1.2:70753933-70753952 | None:intergenic | 40.0% |
| !! | CGGTCTTGTTGTTTGTTATG+TGG | + | chr1.2:70753569-70753588 | MS.gene60684:CDS | 40.0% |
| !! | GTATTTTGAACGGAGTGTGA+AGG | + | chr1.2:70753090-70753109 | MS.gene60684:CDS | 40.0% |
| AAGGGCTTGATTCTCTTGGT+AGG | + | chr1.2:70753956-70753975 | MS.gene60684:CDS | 45.0% | |
| ACAGAAGGGCTTGATTCTCT+TGG | + | chr1.2:70753952-70753971 | MS.gene60684:CDS | 45.0% | |
| AGTTAGACAGAGAGTTCACG+AGG | + | chr1.2:70753840-70753859 | MS.gene60684:CDS | 45.0% | |
| ATAGCCCAAGTGTAACTCCT+TGG | - | chr1.2:70753652-70753671 | None:intergenic | 45.0% | |
| ATTCTTCCTTTCGCGCTTCT+TGG | - | chr1.2:70753713-70753732 | None:intergenic | 45.0% | |
| ATTGTGCGCAGCAAAACAGA+AGG | + | chr1.2:70753937-70753956 | MS.gene60684:CDS | 45.0% | |
| CACCTATCAACATCGGTCTT+TGG | + | chr1.2:70753399-70753418 | MS.gene60684:CDS | 45.0% | |
| CCATTAACTGAGGAGAAGGA+AGG | + | chr1.2:70753814-70753833 | MS.gene60684:CDS | 45.0% | |
| CCTATCAACATCGGTCTTTG+GGG | + | chr1.2:70753401-70753420 | MS.gene60684:CDS | 45.0% | |
| CCTTCCTTCTCCTCAGTTAA+TGG | - | chr1.2:70753817-70753836 | None:intergenic | 45.0% | |
| CGATCATTTGGTCGTAGCAA+TGG | + | chr1.2:70753319-70753338 | MS.gene60684:CDS | 45.0% | |
| CTAGACAGCTCCAAGCAATT+GGG | + | chr1.2:70753470-70753489 | MS.gene60684:CDS | 45.0% | |
| GAAACCATTCGATCCAAAGG+TGG | - | chr1.2:70753067-70753086 | None:intergenic | 45.0% | |
| GCATTCCAAGGAGTTACACT+TGG | + | chr1.2:70753644-70753663 | MS.gene60684:CDS | 45.0% | |
| GCGTTGAACAGATTCGTGTT+TGG | + | chr1.2:70753143-70753162 | MS.gene60684:CDS | 45.0% | |
| GTTTGTAACGCCATTCGTGA+CGG | + | chr1.2:70753121-70753140 | MS.gene60684:CDS | 45.0% | |
| TCATTTGGTCGTAGCAATGG+TGG | + | chr1.2:70753322-70753341 | MS.gene60684:CDS | 45.0% | |
| TCGGAAACCATTCGATCCAA+AGG | - | chr1.2:70753070-70753089 | None:intergenic | 45.0% | |
| TCTAAGCTTTCGTCGTGAAC+AGG | + | chr1.2:70752838-70752857 | MS.gene60684:CDS | 45.0% | |
| TCTTCATACTCACAAAGGGC+AGG | + | chr1.2:70753033-70753052 | MS.gene60684:CDS | 45.0% | |
| TTGTGCGCAGCAAAACAGAA+GGG | + | chr1.2:70753938-70753957 | MS.gene60684:CDS | 45.0% | |
| !! | CATCAGAGGAGTATTGGTGA+AGG | + | chr1.2:70753202-70753221 | MS.gene60684:CDS | 45.0% |
| !! | GTTTGCGATGCTTTGAAGGA+CGG | + | chr1.2:70753871-70753890 | MS.gene60684:CDS | 45.0% |
| !! | GTTTGTTATGTGGGCTCTTG+TGG | + | chr1.2:70753579-70753598 | MS.gene60684:CDS | 45.0% |
| !! | TTTGCGATGCTTTGAAGGAC+GGG | + | chr1.2:70753872-70753891 | MS.gene60684:CDS | 45.0% |
| ATCCCTTGGAGCGACAAGTA+AGG | + | chr1.2:70753899-70753918 | MS.gene60684:CDS | 50.0% | |
| CAGACCACCTTTGGATCGAA+TGG | + | chr1.2:70753060-70753079 | MS.gene60684:CDS | 50.0% | |
| CATTGCTCTCACTTCACGAG+AGG | + | chr1.2:70753674-70753693 | MS.gene60684:CDS | 50.0% | |
| CCCCAAAGACCGATGTTGAT+AGG | - | chr1.2:70753404-70753423 | None:intergenic | 50.0% | |
| CGCGAAAGGAAGAATGCTTG+TGG | + | chr1.2:70753718-70753737 | MS.gene60684:CDS | 50.0% | |
| CTCACTTCACGAGAGGATCA+CGG | + | chr1.2:70753681-70753700 | MS.gene60684:CDS | 50.0% | |
| CTCTCGTGAAGTGAGAGCAA+TGG | - | chr1.2:70753676-70753695 | None:intergenic | 50.0% | |
| GCACATTCAATCCACGGTCT+TGG | - | chr1.2:70753618-70753637 | None:intergenic | 50.0% | |
| GCTAGACAGCTCCAAGCAAT+TGG | + | chr1.2:70753469-70753488 | MS.gene60684:CDS | 50.0% | |
| GGCGCACTTTCCATTAACTG+AGG | + | chr1.2:70753804-70753823 | MS.gene60684:CDS | 50.0% | |
| TCCCTTACTTGTCGCTCCAA+GGG | - | chr1.2:70753904-70753923 | None:intergenic | 50.0% | |
| TCCCTTGGAGCGACAAGTAA+GGG | + | chr1.2:70753900-70753919 | MS.gene60684:CDS | 50.0% | |
| TCGTGTTTGGCAGAAGCTGT+TGG | + | chr1.2:70753156-70753175 | MS.gene60684:CDS | 50.0% | |
| TGAACGGAGTGTGAAGGCTT+TGG | + | chr1.2:70753096-70753115 | MS.gene60684:CDS | 50.0% | |
| TTCAATCCACGGTCTTGGCA+CGG | - | chr1.2:70753613-70753632 | None:intergenic | 50.0% | |
| TTCCCTTACTTGTCGCTCCA+AGG | - | chr1.2:70753905-70753924 | None:intergenic | 50.0% | |
| ! | CGAACCTTGATAGTCCGTAG+CGG | - | chr1.2:70752783-70752802 | None:intergenic | 50.0% |
| ! | CGTGGAGTGTTTCTCGTACT+TGG | + | chr1.2:70753440-70753459 | MS.gene60684:CDS | 50.0% |
| ! | GAACCTTGATAGTCCGTAGC+GGG | - | chr1.2:70752782-70752801 | None:intergenic | 50.0% |
| ACGGTCTTGGCACGGAATTG+CGG | - | chr1.2:70753605-70753624 | None:intergenic | 55.0% | |
| ACTTCACGAGAGGATCACGG+AGG | + | chr1.2:70753684-70753703 | MS.gene60684:CDS | 55.0% | |
| CTGTTCAACGCCGTCACGAA+TGG | - | chr1.2:70753134-70753153 | None:intergenic | 55.0% | |
| GCAGGTTGTCAGACCACCTT+TGG | + | chr1.2:70753051-70753070 | MS.gene60684:CDS | 55.0% | |
| ! | AGGAGTCCAAGAAGCGCGAA+AGG | + | chr1.2:70753704-70753723 | MS.gene60684:CDS | 55.0% |
| ! | ATGCCCGCTACGGACTATCA+AGG | + | chr1.2:70752776-70752795 | MS.gene60684:CDS | 55.0% |
| GCAATTCCGTGCCAAGACCG+TGG | + | chr1.2:70753604-70753623 | MS.gene60684:CDS | 60.0% | |
| ! | GAAGGACGGGCTTGATCCCT+TGG | + | chr1.2:70753885-70753904 | MS.gene60684:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 70752776 | 70753996 | 70752776 | ID=MS.gene60684 |
| chr1.2 | mRNA | 70752776 | 70753996 | 70752776 | ID=MS.gene60684.t1;Parent=MS.gene60684 |
| chr1.2 | exon | 70752776 | 70753996 | 70752776 | ID=MS.gene60684.t1.exon1;Parent=MS.gene60684.t1 |
| chr1.2 | CDS | 70752776 | 70753996 | 70752776 | ID=cds.MS.gene60684.t1;Parent=MS.gene60684.t1 |
| Gene Sequence |
| Protein sequence |
