Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76042.t1 | XP_003592100.1 | 94.6 | 404 | 19 | 1 | 1 | 401 | 1 | 404 | 1.20E-194 | 689.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76042.t1 | G7IBZ7 | 94.6 | 404 | 19 | 1 | 1 | 401 | 1 | 404 | 8.8e-195 | 689.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006168 | MS.gene76042 | PPI |
| MS.gene59219 | MS.gene76042 | PPI |
| MS.gene60684 | MS.gene76042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76042.t1 | MTR_1g098700 | 95.545 | 404 | 15 | 1 | 1 | 401 | 1 | 404 | 0.0 | 805 |
| MS.gene76042.t1 | MTR_6g037000 | 62.972 | 397 | 120 | 4 | 3 | 396 | 4 | 376 | 8.19e-180 | 505 |
| MS.gene76042.t1 | MTR_6g036920 | 62.814 | 398 | 121 | 4 | 3 | 397 | 4 | 377 | 1.05e-170 | 482 |
| MS.gene76042.t1 | MTR_6g037010 | 57.104 | 366 | 108 | 3 | 32 | 396 | 1 | 318 | 6.02e-143 | 410 |
| MS.gene76042.t1 | MTR_4g094375 | 54.726 | 402 | 162 | 4 | 1 | 397 | 1 | 387 | 1.78e-141 | 409 |
| MS.gene76042.t1 | MTR_8g098895 | 42.998 | 407 | 192 | 11 | 2 | 396 | 3 | 381 | 1.42e-89 | 276 |
| MS.gene76042.t1 | MTR_6g037060 | 60.699 | 229 | 63 | 4 | 3 | 228 | 4 | 208 | 1.08e-85 | 260 |
| MS.gene76042.t1 | MTR_6g036980 | 63.522 | 159 | 55 | 1 | 32 | 187 | 1 | 159 | 2.56e-65 | 206 |
| MS.gene76042.t1 | MTR_6g037070 | 67.939 | 131 | 41 | 1 | 268 | 397 | 1 | 131 | 1.18e-48 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76042.t1 | AT1G18740 | 60.049 | 408 | 125 | 7 | 1 | 396 | 1 | 382 | 9.28e-173 | 488 |
| MS.gene76042.t1 | AT1G74450 | 58.810 | 420 | 133 | 7 | 1 | 403 | 1 | 397 | 6.87e-166 | 471 |
| MS.gene76042.t1 | AT1G43630 | 56.863 | 408 | 145 | 8 | 6 | 403 | 27 | 413 | 4.20e-161 | 459 |
| MS.gene76042.t1 | AT1G63930 | 37.176 | 425 | 214 | 11 | 2 | 396 | 3 | 404 | 2.49e-93 | 286 |
| MS.gene76042.t1 | AT4G11300 | 36.070 | 402 | 215 | 12 | 2 | 396 | 3 | 369 | 2.14e-68 | 221 |
| MS.gene76042.t1 | AT4G23530 | 37.805 | 410 | 206 | 14 | 3 | 391 | 4 | 385 | 4.26e-60 | 200 |
Find 100 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTTCTCCTCAGTTAA+TGG | 0.103360 | 1.1:+71003940 | None:intergenic |
| CCTTCATCGTTAACAAATTT+TGG | 0.118674 | 1.1:-71004939 | MS.gene76042:CDS |
| ATTCTTCCTTTCGCGCTTCT+TGG | 0.234533 | 1.1:+71004044 | None:intergenic |
| ACCTATCAACATCGGTCTTT+GGG | 0.264790 | 1.1:-71004354 | MS.gene76042:CDS |
| CGTGGAGTGTTTCTCGTACT+TGG | 0.273934 | 1.1:-71004314 | MS.gene76042:CDS |
| CACCTATCAACATCGGTCTT+TGG | 0.290128 | 1.1:-71004355 | MS.gene76042:CDS |
| ATGAATTGCTTTCACTCAAA+TGG | 0.307901 | 1.1:-71004788 | MS.gene76042:CDS |
| GAAGGATGGGCTTGATCCCT+TGG | 0.336411 | 1.1:-71003869 | MS.gene76042:CDS |
| TCCAAGAGCAAATGATCTTA+TGG | 0.351747 | 1.1:-71004247 | MS.gene76042:CDS |
| ATAGCCCAAGTGTAACTTCT+TGG | 0.363666 | 1.1:+71004105 | None:intergenic |
| GCAGGTTGTCAGACCACCTT+TGG | 0.368006 | 1.1:-71004694 | MS.gene76042:CDS |
| GTCTGTTTATATCATGAATT+CGG | 0.368410 | 1.1:-71004205 | MS.gene76042:CDS |
| GCTAGACAGCTCCAAGCAAT+TGG | 0.379594 | 1.1:-71004285 | MS.gene76042:CDS |
| CAAATGCTTCTATTGCTCAT+AGG | 0.383256 | 1.1:-71004452 | MS.gene76042:CDS |
| ACAAGTTACTCAGCATTGTT+TGG | 0.391925 | 1.1:+71003775 | None:intergenic |
| TGCTTTCACTCAAATGGGTT+GGG | 0.405982 | 1.1:-71004782 | MS.gene76042:CDS |
| CGGTCTTGTTGTTTGTTATG+TGG | 0.416918 | 1.1:-71004185 | MS.gene76042:CDS |
| TCTAAGCTTTCGTCGTGAAC+AGG | 0.420508 | 1.1:-71004907 | MS.gene76042:CDS |
| AAAAGTTTGTGATGCTTTGA+AGG | 0.422996 | 1.1:-71003887 | MS.gene76042:CDS |
| GCTCATAGGAATCGATCATT+TGG | 0.426557 | 1.1:-71004438 | MS.gene76042:CDS |
| TGAACGGAGTGTGAAGGCTT+TGG | 0.427355 | 1.1:-71004649 | MS.gene76042:CDS |
| GCCATAAGATCATTTGCTCT+TGG | 0.428544 | 1.1:+71004246 | None:intergenic |
| GATGAGTGATTTGGCTGATT+CGG | 0.429315 | 1.1:-71003971 | MS.gene76042:CDS |
| CCAAAATTTGTTAACGATGA+AGG | 0.429552 | 1.1:+71004939 | None:intergenic |
| TCAATTAGTTTGCTCGATGA+TGG | 0.442451 | 1.1:-71004483 | MS.gene76042:CDS |
| ATTCAATCCACGGTCTTGGC+AGG | 0.444612 | 1.1:+71004143 | None:intergenic |
| ATAAGATCATTTGCTCTTGG+AGG | 0.449559 | 1.1:+71004249 | None:intergenic |
| AATGATCTTATGGCAACTAA+TGG | 0.450052 | 1.1:-71004237 | MS.gene76042:CDS |
| TAATGTTGTTCCCAATTGCT+TGG | 0.452399 | 1.1:+71004274 | None:intergenic |
| TCGTGAACAGGTTCATTCAA+TGG | 0.455511 | 1.1:-71004895 | MS.gene76042:CDS |
| GCACATTCAATCCACGGTCT+TGG | 0.461101 | 1.1:+71004139 | None:intergenic |
| TTGCTTTCACTCAAATGGGT+TGG | 0.470637 | 1.1:-71004783 | MS.gene76042:CDS |
| CCATTAACTGAGGAGAAAGA+AGG | 0.471352 | 1.1:-71003940 | MS.gene76042:CDS |
| GGTCTTGTTGTTTGTTATGT+GGG | 0.477920 | 1.1:-71004184 | MS.gene76042:CDS |
| GGAGATTGTTCTTTATGCAT+TGG | 0.478527 | 1.1:-71004568 | MS.gene76042:CDS |
| ACAGAAGGGCTTGATTCTCT+TGG | 0.480056 | 1.1:-71003802 | MS.gene76042:CDS |
| ATCCCTTGGAGCGACAGGTA+AGG | 0.481679 | 1.1:-71003855 | MS.gene76042:CDS |
| TAGTTTGCTCGATGATGGTA+AGG | 0.484108 | 1.1:-71004478 | MS.gene76042:CDS |
| CCCCAAAGACCGATGTTGAT+AGG | 0.490236 | 1.1:+71004353 | None:intergenic |
| TGAATTGCTTTCACTCAAAT+GGG | 0.491553 | 1.1:-71004787 | MS.gene76042:CDS |
| CACACTCCGTTCAAAATACT+CGG | 0.497877 | 1.1:+71004659 | None:intergenic |
| TGTTAGGGTGATGAGTGATT+TGG | 0.500530 | 1.1:-71003980 | MS.gene76042:CDS |
| TTCAATGGAAGGTTCAACCT+TGG | 0.503837 | 1.1:-71004880 | MS.gene76042:CDS |
| CAGACCACCTTTGGATCGAA+TGG | 0.504656 | 1.1:-71004685 | MS.gene76042:CDS |
| CTAGACAGCTCCAAGCAATT+GGG | 0.505291 | 1.1:-71004284 | MS.gene76042:CDS |
| GCTTGATCCCTTGGAGCGAC+AGG | 0.506665 | 1.1:-71003860 | MS.gene76042:CDS |
| GCGTTGAACAGATACGTGTT+TGG | 0.506828 | 1.1:-71004602 | MS.gene76042:CDS |
| TAAACTCCTCTTGACAAATG+AGG | 0.508909 | 1.1:+71004742 | None:intergenic |
| TCCCTTGGAGCGACAGGTAA+GGG | 0.514106 | 1.1:-71003854 | MS.gene76042:CDS |
| GGCAATTTAGATCACTTTCG+TGG | 0.514581 | 1.1:-71004332 | MS.gene76042:CDS |
| GCATTCCAAGAAGTTACACT+TGG | 0.514625 | 1.1:-71004110 | MS.gene76042:CDS |
| TTGGATCATCAGAGGAGTAT+TGG | 0.515295 | 1.1:-71004549 | MS.gene76042:CDS |
| TTCCCTTACCTGTCGCTCCA+AGG | 0.520164 | 1.1:+71003852 | None:intergenic |
| CATTAACTGAGGAGAAAGAA+GGG | 0.525206 | 1.1:-71003939 | MS.gene76042:CDS |
| CCCTTTGTGAGTATGAAGAA+TGG | 0.526236 | 1.1:+71004716 | None:intergenic |
| AGGAGTCCAAGAAGCGCGAA+AGG | 0.529552 | 1.1:-71004050 | MS.gene76042:CDS |
| CGATCATTTGGTCGTAGCAA+TGG | 0.535372 | 1.1:-71004426 | MS.gene76042:CDS |
| GTTTGTGATGCTTTGAAGGA+TGG | 0.538717 | 1.1:-71003883 | MS.gene76042:CDS |
| TTGCTTCCTCATTTGTCAAG+AGG | 0.544215 | 1.1:-71004748 | MS.gene76042:CDS |
| GTTTGTTATGTGGGCTCTTG+TGG | 0.547659 | 1.1:-71004175 | MS.gene76042:CDS |
| TCCCTTACCTGTCGCTCCAA+GGG | 0.547819 | 1.1:+71003853 | None:intergenic |
| TTTGTGATGCTTTGAAGGAT+GGG | 0.551111 | 1.1:-71003882 | MS.gene76042:CDS |
| CTGTTCAACGCCGTCACGAA+TGG | 0.553209 | 1.1:+71004614 | None:intergenic |
| ACGTGTTTGGCAGAAGCTGT+TGG | 0.560515 | 1.1:-71004589 | MS.gene76042:CDS |
| TCTTCATACTCACAAAGGGC+AGG | 0.563122 | 1.1:-71004712 | MS.gene76042:CDS |
| CCATTCTTCATACTCACAAA+GGG | 0.564572 | 1.1:-71004716 | MS.gene76042:CDS |
| GAACAGGTTCATTCAATGGA+AGG | 0.566303 | 1.1:-71004891 | MS.gene76042:CDS |
| ATGCCCGCTACGGACTATCA+AGG | 0.570752 | 1.1:-71004969 | MS.gene76042:CDS |
| GCCATTCTTCATACTCACAA+AGG | 0.575268 | 1.1:-71004717 | MS.gene76042:CDS |
| GAACCTTGATAGTCCGTAGC+GGG | 0.577431 | 1.1:+71004966 | None:intergenic |
| TTCAATCCACGGTCTTGGCA+GGG | 0.582419 | 1.1:+71004144 | None:intergenic |
| AGTGAAAGCAATTCATCATG+AGG | 0.582569 | 1.1:+71004795 | None:intergenic |
| TTATGTGAGAATGCCCGCTA+CGG | 0.587733 | 1.1:-71004979 | None:intergenic |
| AAGGGCTTGATTCTCTTGGT+AGG | 0.590533 | 1.1:-71003798 | MS.gene76042:CDS |
| CTCTCGTGGAGTGAGAGCAA+TGG | 0.595839 | 1.1:+71004081 | None:intergenic |
| GTTTGTAACGCCATTCGTGA+CGG | 0.597336 | 1.1:-71004624 | MS.gene76042:CDS |
| CCTATCAACATCGGTCTTTG+GGG | 0.598980 | 1.1:-71004353 | MS.gene76042:CDS |
| TTTATGCATTGGATCATCAG+AGG | 0.599987 | 1.1:-71004557 | MS.gene76042:CDS |
| TGAATCAAGCTCAATCTCCA+AGG | 0.602258 | 1.1:+71004863 | None:intergenic |
| ACTCCTCTGTGATCCTCTCG+TGG | 0.605117 | 1.1:+71004067 | None:intergenic |
| GCAATTCCCTGCCAAGACCG+TGG | 0.608884 | 1.1:-71004150 | MS.gene76042:CDS |
| CATTGCTCTCACTCCACGAG+AGG | 0.610865 | 1.1:-71004080 | MS.gene76042:CDS |
| CGCGAAAGGAAGAATGCTTG+TGG | 0.612564 | 1.1:-71004036 | MS.gene76042:CDS |
| TGTTATGTGGGCTCTTGTGG+CGG | 0.614554 | 1.1:-71004172 | MS.gene76042:CDS |
| ATTGTGCGCAGCAAAACAGA+AGG | 0.614973 | 1.1:-71003817 | MS.gene76042:CDS |
| TCGGAAACCATTCGATCCAA+AGG | 0.615554 | 1.1:+71004678 | None:intergenic |
| GACGAAAGCTTAGAATTGAA+CGG | 0.631479 | 1.1:+71004916 | None:intergenic |
| GGCGCACTTTCCATTAACTG+AGG | 0.638557 | 1.1:-71003950 | MS.gene76042:CDS |
| TGAAATGCACATTCAATCCA+CGG | 0.640211 | 1.1:+71004133 | None:intergenic |
| TTGTGCGCAGCAAAACAGAA+GGG | 0.653368 | 1.1:-71003816 | MS.gene76042:CDS |
| GAAACCATTCGATCCAAAGG+TGG | 0.656279 | 1.1:+71004681 | None:intergenic |
| ATTAACTGAGGAGAAAGAAG+GGG | 0.656511 | 1.1:-71003938 | MS.gene76042:CDS |
| CATTCCAAGAAGTTACACTT+GGG | 0.659636 | 1.1:-71004109 | MS.gene76042:CDS |
| CATCAGAGGAGTATTGGTGA+AGG | 0.661798 | 1.1:-71004543 | MS.gene76042:CDS |
| GATAAAGATCAGCATCAACA+TGG | 0.662609 | 1.1:-71004396 | MS.gene76042:CDS |
| TCATTTGGTCGTAGCAATGG+TGG | 0.670155 | 1.1:-71004423 | MS.gene76042:CDS |
| AGTTAGACAGAGAGTTCACG+AGG | 0.670722 | 1.1:-71003914 | MS.gene76042:CDS |
| GCAATAACACCTATCAACAT+CGG | 0.671842 | 1.1:-71004362 | MS.gene76042:CDS |
| CGAACCTTGATAGTCCGTAG+CGG | 0.776669 | 1.1:+71004965 | None:intergenic |
| ACTCCACGAGAGGATCACAG+AGG | 0.822423 | 1.1:-71004070 | MS.gene76042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATTGAAAAATGTGTT+AGG | - | chr1.1:71004753-71004772 | MS.gene76042:CDS | 20.0% |
| !! | ACAAATTGAAAAATGTGTTA+GGG | - | chr1.1:71004754-71004773 | MS.gene76042:CDS | 20.0% |
| ! | GTCTGTTTATATCATGAATT+CGG | - | chr1.1:71004544-71004563 | MS.gene76042:CDS | 25.0% |
| AAAAGTTTGTGATGCTTTGA+AGG | - | chr1.1:71004862-71004881 | MS.gene76042:CDS | 30.0% | |
| AATGATCTTATGGCAACTAA+TGG | - | chr1.1:71004512-71004531 | MS.gene76042:CDS | 30.0% | |
| ATGAATTGCTTTCACTCAAA+TGG | - | chr1.1:71003961-71003980 | MS.gene76042:CDS | 30.0% | |
| TGAATTGCTTTCACTCAAAT+GGG | - | chr1.1:71003962-71003981 | MS.gene76042:CDS | 30.0% | |
| ! | CCTTCATCGTTAACAAATTT+TGG | - | chr1.1:71003810-71003829 | MS.gene76042:CDS | 30.0% |
| !! | CCAAAATTTGTTAACGATGA+AGG | + | chr1.1:71003813-71003832 | None:intergenic | 30.0% |
| AGTGAAAGCAATTCATCATG+AGG | + | chr1.1:71003957-71003976 | None:intergenic | 35.0% | |
| ATAAGATCATTTGCTCTTGG+AGG | + | chr1.1:71004503-71004522 | None:intergenic | 35.0% | |
| ATTAACTGAGGAGAAAGAAG+GGG | - | chr1.1:71004811-71004830 | MS.gene76042:CDS | 35.0% | |
| CAAATGCTTCTATTGCTCAT+AGG | - | chr1.1:71004297-71004316 | MS.gene76042:CDS | 35.0% | |
| CATTAACTGAGGAGAAAGAA+GGG | - | chr1.1:71004810-71004829 | MS.gene76042:CDS | 35.0% | |
| CATTCCAAGAAGTTACACTT+GGG | - | chr1.1:71004640-71004659 | MS.gene76042:CDS | 35.0% | |
| CCATTCTTCATACTCACAAA+GGG | - | chr1.1:71004033-71004052 | MS.gene76042:CDS | 35.0% | |
| GACGAAAGCTTAGAATTGAA+CGG | + | chr1.1:71003836-71003855 | None:intergenic | 35.0% | |
| GATAAAGATCAGCATCAACA+TGG | - | chr1.1:71004353-71004372 | MS.gene76042:CDS | 35.0% | |
| GCAATAACACCTATCAACAT+CGG | - | chr1.1:71004387-71004406 | MS.gene76042:CDS | 35.0% | |
| GGAGATTGTTCTTTATGCAT+TGG | - | chr1.1:71004181-71004200 | MS.gene76042:CDS | 35.0% | |
| TAAACTCCTCTTGACAAATG+AGG | + | chr1.1:71004010-71004029 | None:intergenic | 35.0% | |
| TAATGTTGTTCCCAATTGCT+TGG | + | chr1.1:71004478-71004497 | None:intergenic | 35.0% | |
| TCCAAGAGCAAATGATCTTA+TGG | - | chr1.1:71004502-71004521 | MS.gene76042:CDS | 35.0% | |
| TGAAATGCACATTCAATCCA+CGG | + | chr1.1:71004619-71004638 | None:intergenic | 35.0% | |
| TTTATGCATTGGATCATCAG+AGG | - | chr1.1:71004192-71004211 | MS.gene76042:CDS | 35.0% | |
| !! | GGTCTTGTTGTTTGTTATGT+GGG | - | chr1.1:71004565-71004584 | MS.gene76042:CDS | 35.0% |
| !! | TCAATTAGTTTGCTCGATGA+TGG | - | chr1.1:71004266-71004285 | MS.gene76042:CDS | 35.0% |
| !! | TGGTTTCCGAGTATTTTGAA+CGG | - | chr1.1:71004084-71004103 | MS.gene76042:CDS | 35.0% |
| !! | TTTGTGATGCTTTGAAGGAT+GGG | - | chr1.1:71004867-71004886 | MS.gene76042:CDS | 35.0% |
| ACCTATCAACATCGGTCTTT+GGG | - | chr1.1:71004395-71004414 | MS.gene76042:CDS | 40.0% | |
| ATAGCCCAAGTGTAACTTCT+TGG | + | chr1.1:71004647-71004666 | None:intergenic | 40.0% | |
| CACACTCCGTTCAAAATACT+CGG | + | chr1.1:71004093-71004112 | None:intergenic | 40.0% | |
| CCATTAACTGAGGAGAAAGA+AGG | - | chr1.1:71004809-71004828 | MS.gene76042:CDS | 40.0% | |
| CCCTTTGTGAGTATGAAGAA+TGG | + | chr1.1:71004036-71004055 | None:intergenic | 40.0% | |
| CCTTCTTTCTCCTCAGTTAA+TGG | + | chr1.1:71004812-71004831 | None:intergenic | 40.0% | |
| GAACAGGTTCATTCAATGGA+AGG | - | chr1.1:71003858-71003877 | MS.gene76042:CDS | 40.0% | |
| GCATTCCAAGAAGTTACACT+TGG | - | chr1.1:71004639-71004658 | MS.gene76042:CDS | 40.0% | |
| GCCATAAGATCATTTGCTCT+TGG | + | chr1.1:71004506-71004525 | None:intergenic | 40.0% | |
| GCCATTCTTCATACTCACAA+AGG | - | chr1.1:71004032-71004051 | MS.gene76042:CDS | 40.0% | |
| GCTCATAGGAATCGATCATT+TGG | - | chr1.1:71004311-71004330 | MS.gene76042:CDS | 40.0% | |
| GGCAATTTAGATCACTTTCG+TGG | - | chr1.1:71004417-71004436 | MS.gene76042:CDS | 40.0% | |
| TCGTGAACAGGTTCATTCAA+TGG | - | chr1.1:71003854-71003873 | MS.gene76042:CDS | 40.0% | |
| TGAATCAAGCTCAATCTCCA+AGG | + | chr1.1:71003889-71003908 | None:intergenic | 40.0% | |
| TGTTAGGGTGATGAGTGATT+TGG | - | chr1.1:71004769-71004788 | MS.gene76042:CDS | 40.0% | |
| TTCAATGGAAGGTTCAACCT+TGG | - | chr1.1:71003869-71003888 | MS.gene76042:CDS | 40.0% | |
| TTGCTTCCTCATTTGTCAAG+AGG | - | chr1.1:71004001-71004020 | MS.gene76042:CDS | 40.0% | |
| TTGCTTTCACTCAAATGGGT+TGG | - | chr1.1:71003966-71003985 | MS.gene76042:CDS | 40.0% | |
| ! | GATGAGTGATTTGGCTGATT+CGG | - | chr1.1:71004778-71004797 | MS.gene76042:CDS | 40.0% |
| ! | TGCTTTCACTCAAATGGGTT+GGG | - | chr1.1:71003967-71003986 | MS.gene76042:CDS | 40.0% |
| ! | TTGGATCATCAGAGGAGTAT+TGG | - | chr1.1:71004200-71004219 | MS.gene76042:CDS | 40.0% |
| ! | TTTTGCTGCGCACAATTCTA+TGG | + | chr1.1:71004928-71004947 | None:intergenic | 40.0% |
| !! | CGGTCTTGTTGTTTGTTATG+TGG | - | chr1.1:71004564-71004583 | MS.gene76042:CDS | 40.0% |
| !! | GTATTTTGAACGGAGTGTGA+AGG | - | chr1.1:71004094-71004113 | MS.gene76042:CDS | 40.0% |
| !! | GTTTGTGATGCTTTGAAGGA+TGG | - | chr1.1:71004866-71004885 | MS.gene76042:CDS | 40.0% |
| !! | TAGTTTGCTCGATGATGGTA+AGG | - | chr1.1:71004271-71004290 | MS.gene76042:CDS | 40.0% |
| AAGGGCTTGATTCTCTTGGT+AGG | - | chr1.1:71004951-71004970 | MS.gene76042:CDS | 45.0% | |
| ACAGAAGGGCTTGATTCTCT+TGG | - | chr1.1:71004947-71004966 | MS.gene76042:CDS | 45.0% | |
| AGTTAGACAGAGAGTTCACG+AGG | - | chr1.1:71004835-71004854 | MS.gene76042:CDS | 45.0% | |
| ATTCTTCCTTTCGCGCTTCT+TGG | + | chr1.1:71004708-71004727 | None:intergenic | 45.0% | |
| ATTGTGCGCAGCAAAACAGA+AGG | - | chr1.1:71004932-71004951 | MS.gene76042:CDS | 45.0% | |
| CACCTATCAACATCGGTCTT+TGG | - | chr1.1:71004394-71004413 | MS.gene76042:CDS | 45.0% | |
| CCTATCAACATCGGTCTTTG+GGG | - | chr1.1:71004396-71004415 | MS.gene76042:CDS | 45.0% | |
| CGATCATTTGGTCGTAGCAA+TGG | - | chr1.1:71004323-71004342 | MS.gene76042:CDS | 45.0% | |
| CTAGACAGCTCCAAGCAATT+GGG | - | chr1.1:71004465-71004484 | MS.gene76042:CDS | 45.0% | |
| GAAACCATTCGATCCAAAGG+TGG | + | chr1.1:71004071-71004090 | None:intergenic | 45.0% | |
| GCGTTGAACAGATACGTGTT+TGG | - | chr1.1:71004147-71004166 | MS.gene76042:CDS | 45.0% | |
| GTTTGTAACGCCATTCGTGA+CGG | - | chr1.1:71004125-71004144 | MS.gene76042:CDS | 45.0% | |
| TCATTTGGTCGTAGCAATGG+TGG | - | chr1.1:71004326-71004345 | MS.gene76042:CDS | 45.0% | |
| TCGGAAACCATTCGATCCAA+AGG | + | chr1.1:71004074-71004093 | None:intergenic | 45.0% | |
| TCTAAGCTTTCGTCGTGAAC+AGG | - | chr1.1:71003842-71003861 | MS.gene76042:CDS | 45.0% | |
| TCTTCATACTCACAAAGGGC+AGG | - | chr1.1:71004037-71004056 | MS.gene76042:CDS | 45.0% | |
| TTGTGCGCAGCAAAACAGAA+GGG | - | chr1.1:71004933-71004952 | MS.gene76042:CDS | 45.0% | |
| !! | CATCAGAGGAGTATTGGTGA+AGG | - | chr1.1:71004206-71004225 | MS.gene76042:CDS | 45.0% |
| !! | GTTTGTTATGTGGGCTCTTG+TGG | - | chr1.1:71004574-71004593 | MS.gene76042:CDS | 45.0% |
| ACGTGTTTGGCAGAAGCTGT+TGG | - | chr1.1:71004160-71004179 | MS.gene76042:CDS | 50.0% | |
| ATTCAATCCACGGTCTTGGC+AGG | + | chr1.1:71004609-71004628 | None:intergenic | 50.0% | |
| CAGACCACCTTTGGATCGAA+TGG | - | chr1.1:71004064-71004083 | MS.gene76042:CDS | 50.0% | |
| CCCCAAAGACCGATGTTGAT+AGG | + | chr1.1:71004399-71004418 | None:intergenic | 50.0% | |
| CGCGAAAGGAAGAATGCTTG+TGG | - | chr1.1:71004713-71004732 | MS.gene76042:CDS | 50.0% | |
| GCACATTCAATCCACGGTCT+TGG | + | chr1.1:71004613-71004632 | None:intergenic | 50.0% | |
| GCTAGACAGCTCCAAGCAAT+TGG | - | chr1.1:71004464-71004483 | MS.gene76042:CDS | 50.0% | |
| GGCGCACTTTCCATTAACTG+AGG | - | chr1.1:71004799-71004818 | MS.gene76042:CDS | 50.0% | |
| TGAACGGAGTGTGAAGGCTT+TGG | - | chr1.1:71004100-71004119 | MS.gene76042:CDS | 50.0% | |
| TGTTATGTGGGCTCTTGTGG+CGG | - | chr1.1:71004577-71004596 | MS.gene76042:CDS | 50.0% | |
| TTCAATCCACGGTCTTGGCA+GGG | + | chr1.1:71004608-71004627 | None:intergenic | 50.0% | |
| ! | CGAACCTTGATAGTCCGTAG+CGG | + | chr1.1:71003787-71003806 | None:intergenic | 50.0% |
| ! | CGTGGAGTGTTTCTCGTACT+TGG | - | chr1.1:71004435-71004454 | MS.gene76042:CDS | 50.0% |
| ! | GAACCTTGATAGTCCGTAGC+GGG | + | chr1.1:71003786-71003805 | None:intergenic | 50.0% |
| ACTCCACGAGAGGATCACAG+AGG | - | chr1.1:71004679-71004698 | MS.gene76042:CDS | 55.0% | |
| ACTCCTCTGTGATCCTCTCG+TGG | + | chr1.1:71004685-71004704 | None:intergenic | 55.0% | |
| ATCCCTTGGAGCGACAGGTA+AGG | - | chr1.1:71004894-71004913 | MS.gene76042:CDS | 55.0% | |
| CATTGCTCTCACTCCACGAG+AGG | - | chr1.1:71004669-71004688 | MS.gene76042:CDS | 55.0% | |
| CTCTCGTGGAGTGAGAGCAA+TGG | + | chr1.1:71004671-71004690 | None:intergenic | 55.0% | |
| CTGTTCAACGCCGTCACGAA+TGG | + | chr1.1:71004138-71004157 | None:intergenic | 55.0% | |
| GCAGGTTGTCAGACCACCTT+TGG | - | chr1.1:71004055-71004074 | MS.gene76042:CDS | 55.0% | |
| TCCCTTACCTGTCGCTCCAA+GGG | + | chr1.1:71004899-71004918 | None:intergenic | 55.0% | |
| TCCCTTGGAGCGACAGGTAA+GGG | - | chr1.1:71004895-71004914 | MS.gene76042:CDS | 55.0% | |
| TTCCCTTACCTGTCGCTCCA+AGG | + | chr1.1:71004900-71004919 | None:intergenic | 55.0% | |
| ! | AGGAGTCCAAGAAGCGCGAA+AGG | - | chr1.1:71004699-71004718 | MS.gene76042:CDS | 55.0% |
| ! | ATGCCCGCTACGGACTATCA+AGG | - | chr1.1:71003780-71003799 | MS.gene76042:CDS | 55.0% |
| ! | GAAGGATGGGCTTGATCCCT+TGG | - | chr1.1:71004880-71004899 | MS.gene76042:CDS | 55.0% |
| GCAATTCCCTGCCAAGACCG+TGG | - | chr1.1:71004599-71004618 | MS.gene76042:CDS | 60.0% | |
| GCTTGATCCCTTGGAGCGAC+AGG | - | chr1.1:71004889-71004908 | MS.gene76042:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 71003780 | 71004991 | 71003780 | ID=MS.gene76042 |
| chr1.1 | mRNA | 71003780 | 71004991 | 71003780 | ID=MS.gene76042.t1;Parent=MS.gene76042 |
| chr1.1 | exon | 71003780 | 71004991 | 71003780 | ID=MS.gene76042.t1.exon1;Parent=MS.gene76042.t1 |
| chr1.1 | CDS | 71003780 | 71004991 | 71003780 | ID=cds.MS.gene76042.t1;Parent=MS.gene76042.t1 |
| Gene Sequence |
| Protein sequence |
