AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006471

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006471.t1 MTR_1g104550 95.144 659 30 2 1 658 1 658 0.0 1299
MS.gene006471.t1 MTR_1g104590 53.139 653 293 4 18 658 7 658 0.0 745
MS.gene006471.t1 MTR_4g117660 48.580 634 311 5 34 658 33 660 0.0 644
MS.gene006471.t1 MTR_4g045887 45.827 659 343 6 10 658 4 658 0.0 635
MS.gene006471.t1 MTR_4g117610 46.117 631 330 4 34 658 27 653 0.0 615
MS.gene006471.t1 MTR_4g117670 50.090 553 268 3 112 658 26 576 0.0 583
MS.gene006471.t1 MTR_3g080500 45.483 642 326 10 34 658 78 712 0.0 563
MS.gene006471.t1 MTR_3g077080 29.956 681 404 20 34 658 8 671 1.33e-81 272
MS.gene006471.t1 MTR_8g069505 29.499 678 411 19 34 658 8 671 4.91e-81 271
MS.gene006471.t1 MTR_8g069505 29.586 676 409 19 34 656 32 693 5.57e-81 271
MS.gene006471.t1 MTR_3g077080 29.956 681 404 20 34 658 73 736 7.47e-81 272
MS.gene006471.t1 MTR_8g069505 29.499 678 411 19 34 658 82 745 1.67e-80 271
MS.gene006471.t1 MTR_8g069505 29.499 678 411 19 34 658 69 732 1.69e-80 271
MS.gene006471.t1 MTR_5g033170 29.308 679 412 19 34 658 44 708 9.32e-80 268
MS.gene006471.t1 MTR_5g033170 29.235 667 404 19 34 646 44 696 6.00e-77 260
MS.gene006471.t1 MTR_3g077080 31.191 529 327 12 153 658 1 515 1.72e-74 249
MS.gene006471.t1 MTR_8g069505 28.287 502 298 16 34 487 8 495 1.31e-49 182
MS.gene006471.t1 MTR_8g069505 28.287 502 298 16 34 487 82 569 4.20e-49 182
MS.gene006471.t1 MTR_8g069505 28.287 502 298 16 34 487 82 569 4.77e-49 182
MS.gene006471.t1 MTR_8g069505 28.287 502 298 16 34 487 69 556 4.92e-49 182
MS.gene006471.t1 MTR_4g098910 46.535 101 46 3 67 163 27 123 1.39e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006471.t1 AT4G14940 61.350 652 243 6 13 658 1 649 0.0 840
MS.gene006471.t1 AT1G31690 50.709 635 303 5 33 658 26 659 0.0 658
MS.gene006471.t1 AT1G31710 50.235 637 304 6 34 658 28 663 0.0 655
MS.gene006471.t1 AT1G31670 50.549 637 285 9 33 658 106 723 0.0 633
MS.gene006471.t1 AT1G62810 44.601 639 335 9 34 658 60 693 0.0 554
MS.gene006471.t1 AT4G12290 43.963 646 335 12 34 658 82 721 0.0 547
MS.gene006471.t1 AT3G43670 44.444 639 336 9 34 658 41 674 0.0 542
MS.gene006471.t1 AT4G12290 42.282 596 317 12 34 608 82 671 1.96e-157 469
MS.gene006471.t1 AT4G12280 48.551 276 134 2 391 658 5 280 1.41e-94 294
MS.gene006471.t1 AT4G12270 38.049 410 219 14 3 383 49 452 2.86e-80 262
MS.gene006471.t1 AT2G42490 28.909 678 415 19 34 658 80 743 2.85e-79 268

Find 153 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAAGCATGACACTTTA+AGG 0.116614 1.2:-77502190 None:intergenic
CCCTGAACTGTTGGCATTAC+TGG 0.128920 1.2:-77505420 None:intergenic
GTTACATGTAGCAACTATTT+TGG 0.149249 1.2:-77502366 None:intergenic
TTTATGGATGTTGGGGAATT+TGG 0.164942 1.2:+77502608 MS.gene006471:CDS
ATGAAGTGAAATGGGGTAAT+TGG 0.194135 1.2:+77502420 MS.gene006471:CDS
CCATCTTTCTGACTTATTAT+AGG 0.201107 1.2:-77504299 None:intergenic
GGGATGAATCAGTAAATATT+TGG 0.213588 1.2:+77502213 MS.gene006471:CDS
CATCTTTCTGACTTATTATA+GGG 0.253755 1.2:-77504298 None:intergenic
TCCAGTAATGCCAACAGTTC+AGG 0.266063 1.2:+77505419 MS.gene006471:CDS
AATTACCCCATTTCACTTCA+TGG 0.275191 1.2:-77502418 None:intergenic
ACAAAATGATAGGTAATATT+AGG 0.286083 1.2:-77501825 None:intergenic
AATCAACAATCCCACAAAAT+TGG 0.291880 1.2:+77502796 MS.gene006471:CDS
AAATTTGTACCTTCAGCTTT+AGG 0.299315 1.2:-77502323 None:intergenic
TTAAAGTGTCATGCTTCTAT+AGG 0.300359 1.2:+77502192 MS.gene006471:CDS
TAGCTCATGGGTTTCACCTT+TGG 0.306251 1.2:-77501949 None:intergenic
AATATAGGAGAGTGATGTAT+AGG 0.327555 1.2:+77502522 MS.gene006471:CDS
ACTACGATTATATTCTTGAT+TGG 0.332434 1.2:+77503532 MS.gene006471:CDS
TAGTAGATGACAACCACTTT+AGG 0.334817 1.2:-77501878 None:intergenic
TCCATATACACTGCATTTCC+CGG 0.342023 1.2:-77502674 None:intergenic
AGACAAATATAAGCCCCTTT+TGG 0.346719 1.2:-77502108 None:intergenic
GAACACCAAGGAAGAGTTAC+TGG 0.348403 1.2:+77504056 MS.gene006471:CDS
GATGTTGGGGAATTTGGTTT+TGG 0.350716 1.2:+77502614 MS.gene006471:CDS
ACTAATAAACTGACAAAGTT+AGG 0.351084 1.2:+77504163 MS.gene006471:CDS
ACTTGTTGCACCTCTCCATT+AGG 0.351918 1.2:-77502713 None:intergenic
CCCGGGAAATGCAGTGTATA+TGG 0.354787 1.2:+77502673 MS.gene006471:CDS
ACATGTAACATATCAAATAT+TGG 0.356378 1.2:+77502380 MS.gene006471:CDS
CAAATAAAAGAAAGAGCATT+TGG 0.360244 1.2:+77503899 MS.gene006471:CDS
ATATAGGAGAGTGATGTATA+GGG 0.363872 1.2:+77502523 MS.gene006471:CDS
AAGGTCAAAGCAAGTGGCTT+TGG 0.369667 1.2:+77504034 MS.gene006471:CDS
TAAAAGACCATGAAGTGAAA+TGG 0.370388 1.2:+77502411 MS.gene006471:CDS
TAGGTAATCAAGTGGGTTAC+CGG 0.374528 1.2:+77504182 MS.gene006471:CDS
GGGAAGCTGAGGCTAGAATT+AGG 0.374969 1.2:+77504104 MS.gene006471:CDS
TATGCATAGGTGGCTCTAAC+AGG 0.375675 1.2:+77503836 MS.gene006471:intron
TTTATTTCAGTTGGAGATAG+AGG 0.376408 1.2:-77501759 None:intergenic
AAAAGACCATGAAGTGAAAT+GGG 0.385354 1.2:+77502412 MS.gene006471:CDS
GAGATGATGGCTTAGCCGTT+TGG 0.398485 1.2:+77504353 MS.gene006471:CDS
ACTGGAAAATCTTCTTGATA+AGG 0.399267 1.2:-77505402 None:intergenic
ACAACCGGTTACTTCTTTGT+TGG 0.399751 1.2:+77504216 MS.gene006471:CDS
CTACGATTATATTCTTGATT+GGG 0.402457 1.2:+77503533 MS.gene006471:CDS
GTATAAGAAGCTCTTCTTTG+TGG 0.406138 1.2:-77504253 None:intergenic
TTATGTATAATGATAGATAC+AGG 0.412401 1.2:+77502291 MS.gene006471:CDS
CAAAGAGTCAATTGCCAAAA+GGG 0.412911 1.2:+77502094 MS.gene006471:CDS
TGAAGTGAAATGGGGTAATT+GGG 0.414227 1.2:+77502421 MS.gene006471:CDS
TAAAGTGTCATGCTTCTATA+GGG 0.417273 1.2:+77502193 MS.gene006471:CDS
AGTAATGTGATTCCTTCAAT+AGG 0.423251 1.2:-77502242 None:intergenic
CCGGTTGATTAGTGGACAAC+CGG 0.428443 1.2:+77504201 MS.gene006471:CDS
GTGGGTTACCGGTTGATTAG+TGG 0.428815 1.2:+77504193 MS.gene006471:CDS
CCATTCACAATTGGTTGGTA+TGG 0.433670 1.2:+77502146 MS.gene006471:CDS
CCAGTAATGCCAACAGTTCA+GGG 0.434764 1.2:+77505420 MS.gene006471:CDS
CTGGAGGGTTCTATGCTGAT+AGG 0.440718 1.2:+77504323 MS.gene006471:CDS
ATAGAAGCATGACACTTTAA+GGG 0.442635 1.2:-77502189 None:intergenic
TTGGCTTGTCTAGGAATACT+AGG 0.444539 1.2:-77501912 None:intergenic
TTTCCCGGGCAATCAACCTT+GGG 0.447039 1.2:-77502659 None:intergenic
GGATGAATCAGTAAATATTT+GGG 0.448183 1.2:+77502214 MS.gene006471:CDS
AAGAGCATTTGGAACCTTAG+TGG 0.448202 1.2:+77503910 MS.gene006471:CDS
AAAAGCTCAATGAATGTAAA+CGG 0.449384 1.2:-77502035 None:intergenic
TTTATCAAACCTTGATGCTA+TGG 0.452224 1.2:-77501652 None:intergenic
CTAAAATACCATTCTAATGT+AGG 0.459209 1.2:-77502581 None:intergenic
AACTAGACATTGTGCAATCA+TGG 0.462369 1.2:-77501682 None:intergenic
AAAGTGGCAGCATAAAAGTT+GGG 0.464025 1.2:+77503565 MS.gene006471:CDS
GCAACCCAAGGTTGATTGCC+CGG 0.466049 1.2:+77502655 MS.gene006471:CDS
TGAGACATTTGTTCCTTACA+TGG 0.466817 1.2:+77502556 MS.gene006471:CDS
TCTTGTGTACCATTCACAAT+TGG 0.469454 1.2:+77502137 MS.gene006471:CDS
CAACCCAAGGTTGATTGCCC+GGG 0.470906 1.2:+77502656 MS.gene006471:CDS
TCTAGCCTCAGCTTCCCTCT+TGG 0.471207 1.2:-77504098 None:intergenic
CCGGTTGTCCACTAATCAAC+CGG 0.473694 1.2:-77504201 None:intergenic
ATTTCCCGGGCAATCAACCT+TGG 0.477945 1.2:-77502660 None:intergenic
TCAAAGAGTCAATTGCCAAA+AGG 0.480601 1.2:+77502093 MS.gene006471:CDS
TCATCCAACAAAGAAGTAAC+CGG 0.481046 1.2:-77504220 None:intergenic
CTTCTTGATAAGGAACATGA+TGG 0.481769 1.2:-77505392 None:intergenic
TTCAACATCAACAAAATGAT+AGG 0.482896 1.2:-77501835 None:intergenic
ACCGTCCAGTAACTCTTCCT+TGG 0.484188 1.2:-77504061 None:intergenic
ATTTGGGCACGGCCTATTGA+AGG 0.485547 1.2:+77502230 MS.gene006471:CDS
CCTATAATAAGTCAGAAAGA+TGG 0.486412 1.2:+77504299 MS.gene006471:CDS
CATCAATGCAAAGTTGCAAA+AGG 0.489305 1.2:+77504015 MS.gene006471:CDS
GGACTTCTGGTAATGTGGCT+TGG 0.489469 1.2:+77502762 MS.gene006471:CDS
TGGAGAGGCTGATATAACTT+TGG 0.495614 1.2:+77503482 MS.gene006471:CDS
TTGGAGATAGAGGGTCTAAA+GGG 0.500491 1.2:-77501749 None:intergenic
TTTGGCTCTAACAACTACCT+TGG 0.506905 1.2:-77501931 None:intergenic
AATAAGTCAGAAAGATGGGC+TGG 0.508097 1.2:+77504304 MS.gene006471:CDS
GTACCTTCAGCTTTAGGCAT+AGG 0.508242 1.2:-77502317 None:intergenic
AAAAGTGGCAGCATAAAAGT+TGG 0.511324 1.2:+77503564 MS.gene006471:CDS
CTATAATAAGTCAGAAAGAT+GGG 0.513360 1.2:+77504300 MS.gene006471:CDS
AAGGTAGTTGTTAGAGCCAA+AGG 0.513719 1.2:+77501933 MS.gene006471:CDS
GACAAAGTTAGGTAATCAAG+TGG 0.516354 1.2:+77504174 MS.gene006471:CDS
GTTGGAGATAGAGGGTCTAA+AGG 0.519701 1.2:-77501750 None:intergenic
TGAGAGGACTTCTGGTAATG+TGG 0.521014 1.2:+77502757 MS.gene006471:CDS
TTAACTATTAACAGCTCAGT+TGG 0.524502 1.2:-77504139 None:intergenic
GATAGGAGCCGTGGAGATGA+TGG 0.529443 1.2:+77504340 MS.gene006471:CDS
TTAAGTCCACCACTAGCTCA+TGG 0.529687 1.2:-77501962 None:intergenic
AGCTGATAGCTTGCAACCCA+AGG 0.530584 1.2:+77502643 MS.gene006471:CDS
GATTGGGAATTCCTGAAAAG+TGG 0.539523 1.2:+77503549 MS.gene006471:CDS
CTAGTGGTGGACTTAACAAA+AGG 0.541951 1.2:+77501969 MS.gene006471:CDS
CCATACCAACCAATTGTGAA+TGG 0.543660 1.2:-77502146 None:intergenic
TCAAAACCACCCTGAACTGT+TGG 0.547785 1.2:-77505429 None:intergenic
TAAGTCCACCACTAGCTCAT+GGG 0.550349 1.2:-77501961 None:intergenic
AAGTTACCTCTGGCTCCAAA+CGG 0.553158 1.2:-77504368 None:intergenic
GTAGGGTTTAATGCTAGAGC+AGG 0.558166 1.2:+77502452 MS.gene006471:CDS
GATAAAATCTACAAAGGTCA+CGG 0.559746 1.2:+77502005 MS.gene006471:CDS
ACATGGATCCTACATTAGAA+TGG 0.559767 1.2:+77502573 MS.gene006471:CDS
TAGTATTCCTAGACAAGCCA+AGG 0.560332 1.2:+77501914 MS.gene006471:CDS
AGCTGCCAAGAGGGAAGCTG+AGG 0.560924 1.2:+77504093 MS.gene006471:CDS
TCTAATGTAGGATCCATGTA+AGG 0.562823 1.2:-77502569 None:intergenic
GTACTTTATACTCAAAGCAA+TGG 0.566274 1.2:-77505483 None:intergenic
TTGCATTATCATCAATGTCA+AGG 0.566643 1.2:-77503985 None:intergenic
TTATTTCAGTTGGAGATAGA+GGG 0.567066 1.2:-77501758 None:intergenic
AGAGGCTGATATAACTTTGG+TGG 0.568953 1.2:+77503485 MS.gene006471:CDS
TCTACAGATAAGAGATGGAG+AGG 0.570899 1.2:+77503467 MS.gene006471:intron
ATAGTTCAACAATCTTACCT+TGG 0.573038 1.2:+77501795 MS.gene006471:CDS
CCATATACACTGCATTTCCC+GGG 0.575282 1.2:-77502673 None:intergenic
CTTATACAAAGTATCAAGTG+TGG 0.580162 1.2:+77504269 MS.gene006471:CDS
ATAGTGCTGTGGCACACAGT+TGG 0.581553 1.2:+77505366 MS.gene006471:CDS
GTGTACCATTCACAATTGGT+TGG 0.582500 1.2:+77502141 MS.gene006471:CDS
GAGAGGTGCAACAAGTGCCA+AGG 0.582725 1.2:+77502720 MS.gene006471:CDS
AGTCAGAAAGATGGGCTGGA+GGG 0.585305 1.2:+77504308 MS.gene006471:CDS
ACAACTACCTTGGCTTGTCT+AGG 0.585547 1.2:-77501921 None:intergenic
GTGATCATGATAATCAGCTA+TGG 0.588908 1.2:-77503942 None:intergenic
TTCTATGCTGATAGGAGCCG+TGG 0.589255 1.2:+77504331 MS.gene006471:CDS
GGTCAAGATAATATGTTACA+AGG 0.594480 1.2:-77503964 None:intergenic
AAAGAGTCAATTGCCAAAAG+GGG 0.595022 1.2:+77502095 MS.gene006471:CDS
AAAACATGACCATAGCATCA+AGG 0.597001 1.2:+77501643 None:intergenic
GATAGAGGGTCTAAAGGGTG+AGG 0.598787 1.2:-77501744 None:intergenic
TATAGGAGAGTGATGTATAG+GGG 0.599318 1.2:+77502524 MS.gene006471:CDS
TTATACAAAGTATCAAGTGT+GGG 0.599809 1.2:+77504270 MS.gene006471:CDS
TTGCAAAAGGTCAAAGCAAG+TGG 0.608603 1.2:+77504028 MS.gene006471:CDS
GGAAATGCAGTGTATATGGA+TGG 0.610466 1.2:+77502677 MS.gene006471:CDS
AGGTGAAACCCATGAGCTAG+TGG 0.611197 1.2:+77501953 MS.gene006471:CDS
AATAAAAGAAGCTGCCAAGA+GGG 0.611661 1.2:+77504084 MS.gene006471:CDS
GCTCAATGAATGTAAACGGA+GGG 0.614184 1.2:-77502031 None:intergenic
GGTCAGAATGATTGCTACTG+TGG 0.615858 1.2:+77503506 MS.gene006471:CDS
GTACCTATGCCTAAAGCTGA+AGG 0.627064 1.2:+77502314 MS.gene006471:CDS
TAATGTGGCTTGGAGACACA+TGG 0.627138 1.2:+77502772 MS.gene006471:CDS
AAGTGGCAGCATAAAAGTTG+GGG 0.627330 1.2:+77503566 MS.gene006471:CDS
GCTTAGCCGTTTGGAGCCAG+AGG 0.628223 1.2:+77504362 MS.gene006471:CDS
AATCAGTAAATATTTGGGCA+CGG 0.629929 1.2:+77502219 MS.gene006471:CDS
GTCAGAATGATTGCTACTGT+GGG 0.632702 1.2:+77503507 MS.gene006471:CDS
AAGTCAGAAAGATGGGCTGG+AGG 0.632809 1.2:+77504307 MS.gene006471:CDS
GCTGAGGCTAGAATTAGGCT+CGG 0.634518 1.2:+77504109 MS.gene006471:CDS
AGCTCAATGAATGTAAACGG+AGG 0.644081 1.2:-77502032 None:intergenic
AGAGGTGCAACAAGTGCCAA+GGG 0.646795 1.2:+77502721 MS.gene006471:CDS
TAATAAAAGAAGCTGCCAAG+AGG 0.654704 1.2:+77504083 MS.gene006471:CDS
TATGGCGGGTCCTAATGGAG+AGG 0.654809 1.2:+77502703 MS.gene006471:CDS
GTATCAGATAAAATCTACAA+AGG 0.657648 1.2:+77501999 MS.gene006471:CDS
TGAAACCCATGAGCTAGTGG+TGG 0.659649 1.2:+77501956 MS.gene006471:CDS
ACAAAGTTAGGTAATCAAGT+GGG 0.674986 1.2:+77504175 MS.gene006471:CDS
ACCAAGGAAGAGTTACTGGA+CGG 0.675087 1.2:+77504060 MS.gene006471:CDS
CGGCTAAGCCATCATCTCCA+CGG 0.681883 1.2:-77504348 None:intergenic
AAAGACCATGAAGTGAAATG+GGG 0.693342 1.2:+77502413 MS.gene006471:CDS
AGAATACAGACATAGTGCTG+TGG 0.711683 1.2:+77505355 MS.gene006471:CDS
TATGTATAATGATAGATACA+GGG 0.716158 1.2:+77502292 MS.gene006471:CDS
TAATATTAGGAATAGCACCA+AGG 0.730567 1.2:-77501812 None:intergenic
CAAGTGGCTTTGGAACACCA+AGG 0.777920 1.2:+77504044 MS.gene006471:CDS
GTAATGCCAACAGTTCAGGG+TGG 0.794870 1.2:+77505423 MS.gene006471:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTAATAAAAAAAATT+AGG + chr1.2:77504967-77504986 MS.gene006471:intron 0.0%
!! TTAATAAAAAAAATTAGGAA+GGG + chr1.2:77504972-77504991 MS.gene006471:intron 10.0%
!! TTTAATAAAAAAAATTAGGA+AGG + chr1.2:77504971-77504990 MS.gene006471:intron 10.0%
!!! ATATATAAATCTACAATTTT+TGG - chr1.2:77504623-77504642 None:intergenic 10.0%
!!! ATCGATTTTTTTTTTTAAAT+TGG + chr1.2:77504937-77504956 MS.gene006471:intron 10.0%
!!! TCGATTTTTTTTTTTAAATT+GGG + chr1.2:77504938-77504957 MS.gene006471:intron 10.0%
!! AAAAAAAAAAAAGAAATCCA+AGG - chr1.2:77503619-77503638 None:intergenic 15.0%
!! AAAAAAAAAGTCCTATAAAA+AGG + chr1.2:77503057-77503076 MS.gene006471:intron 15.0%
!! AATAATATCTATAGTAAAAG+TGG - chr1.2:77504493-77504512 None:intergenic 15.0%
!! AATTTACTATTCAATTACAA+AGG + chr1.2:77503711-77503730 MS.gene006471:intron 15.0%
!! CTCAAAATTGTATAAATATA+TGG + chr1.2:77504563-77504582 MS.gene006471:intron 15.0%
!! GAAGTAATAAAAAAAAATTG+AGG - chr1.2:77505098-77505117 None:intergenic 15.0%
!! TAATAAAAAAAATTAGGAAG+GGG + chr1.2:77504973-77504992 MS.gene006471:intron 15.0%
!! TATAAATGCTCTTATATTTA+GGG + chr1.2:77503093-77503112 MS.gene006471:intron 15.0%
!!! ACTTTTACTATAGATATTAT+TGG + chr1.2:77504492-77504511 MS.gene006471:intron 15.0%
!!! ATAAAACAATTTAGGATATT+AGG - chr1.2:77503819-77503838 None:intergenic 15.0%
!!! ATTTTACAAATATTTTAGAG+AGG + chr1.2:77505029-77505048 MS.gene006471:intron 15.0%
!!! CGATTTTTTTTTTTAAATTG+GGG + chr1.2:77504939-77504958 MS.gene006471:intron 15.0%
!! AAATAAATATGTTGTCTTCT+TGG + chr1.2:77505237-77505256 MS.gene006471:intron 20.0%
!! AATAAAAAAAATTAGGAAGG+GGG + chr1.2:77504974-77504993 MS.gene006471:intron 20.0%
!! AATCATATATTTATAGACGA+AGG - chr1.2:77502853-77502872 None:intergenic 20.0%
!! ACAAAATGATAGGTAATATT+AGG - chr1.2:77501828-77501847 None:intergenic 20.0%
!! ACATGTAACATATCAAATAT+TGG + chr1.2:77502380-77502399 MS.gene006471:CDS 20.0%
!! ACTATAGATATTATTGGAAT+GGG + chr1.2:77504498-77504517 MS.gene006471:intron 20.0%
!! ATCATATATTTATAGACGAA+GGG - chr1.2:77502852-77502871 None:intergenic 20.0%
!! ATGTTAAATTGATTGACAAT+TGG + chr1.2:77502915-77502934 MS.gene006471:intron 20.0%
!! ATTATATGGACTTATTTCAA+TGG + chr1.2:77504797-77504816 MS.gene006471:intron 20.0%
!! CCAAAGTAATATAAATTCTA+AGG - chr1.2:77503653-77503672 None:intergenic 20.0%
!! CCTTAGAATTTATATTACTT+TGG + chr1.2:77503650-77503669 MS.gene006471:intron 20.0%
!! CTATAAATGCTCTTATATTT+AGG + chr1.2:77503092-77503111 MS.gene006471:intron 20.0%
!! GATAAGTTCTACATATTATA+TGG + chr1.2:77504783-77504802 MS.gene006471:intron 20.0%
!! TACTATAGATATTATTGGAA+TGG + chr1.2:77504497-77504516 MS.gene006471:intron 20.0%
!! TATGGTAATTCTACTAAATT+AGG + chr1.2:77505130-77505149 MS.gene006471:intron 20.0%
!! TATGTATAATGATAGATACA+GGG + chr1.2:77502292-77502311 MS.gene006471:CDS 20.0%
!! TTATGTATAATGATAGATAC+AGG + chr1.2:77502291-77502310 MS.gene006471:CDS 20.0%
!!! AACTTTTGTTTTTACTTTAG+TGG + chr1.2:77504386-77504405 MS.gene006471:intron 20.0%
!!! AATTTTCAATCTTCAAGTAA+AGG + chr1.2:77502341-77502360 MS.gene006471:CDS 20.0%
!!! ACAATTGGTATTATTTTATC+AGG + chr1.2:77502930-77502949 MS.gene006471:intron 20.0%
!!! ATTTTCAATCTTCAAGTAAA+GGG + chr1.2:77502342-77502361 MS.gene006471:CDS 20.0%
!!! CTAAATATAAGAGCATTTAT+AGG - chr1.2:77503094-77503113 None:intergenic 20.0%
!!! CTTATTTTTGTAAACTCTTT+AGG + chr1.2:77503288-77503307 MS.gene006471:intron 20.0%
!!! TAAAAAAAAATTGAGGTGTT+AGG - chr1.2:77505091-77505110 None:intergenic 20.0%
!!! TACTTCAATTTTCATCTTTA+TGG + chr1.2:77505112-77505131 MS.gene006471:intron 20.0%
!!! TCATGTTTTCATAGTAATAT+TGG + chr1.2:77502979-77502998 MS.gene006471:intron 20.0%
!!! TTGAAGCTATTTGAAATATA+TGG + chr1.2:77503139-77503158 MS.gene006471:intron 20.0%
!!! TTGAATTTTGAATATGTAAG+AGG - chr1.2:77502077-77502096 None:intergenic 20.0%
!!! TTTATCATTTTGCTATTGTA+AGG - chr1.2:77503749-77503768 None:intergenic 20.0%
!!! TTTTTCTTGATCCTTTTTAT+AGG - chr1.2:77503071-77503090 None:intergenic 20.0%
!!! TTTTTTTTTTAAATTGGGGA+AGG + chr1.2:77504943-77504962 MS.gene006471:intron 20.0%
! AAAAGCTCAATGAATGTAAA+CGG - chr1.2:77502038-77502057 None:intergenic 25.0%
! ACCTATGCATAAAACAATTT+AGG - chr1.2:77503827-77503846 None:intergenic 25.0%
! ACTAATAAACTGACAAAGTT+AGG + chr1.2:77504163-77504182 MS.gene006471:CDS 25.0%
! ACTACGATTATATTCTTGAT+TGG + chr1.2:77503532-77503551 MS.gene006471:CDS 25.0%
! ATTTGTAAAATGACCATCAT+TGG - chr1.2:77505020-77505039 None:intergenic 25.0%
! CATCTTTCTGACTTATTATA+GGG - chr1.2:77504301-77504320 None:intergenic 25.0%
! CTAAAATACCATTCTAATGT+AGG - chr1.2:77502584-77502603 None:intergenic 25.0%
! CTACGATTATATTCTTGATT+GGG + chr1.2:77503533-77503552 MS.gene006471:CDS 25.0%
! CTATAATAAGTCAGAAAGAT+GGG + chr1.2:77504300-77504319 MS.gene006471:CDS 25.0%
! GCTTATTATTTAACCAAACA+GGG + chr1.2:77503404-77503423 MS.gene006471:intron 25.0%
! GGATGAATCAGTAAATATTT+GGG + chr1.2:77502214-77502233 MS.gene006471:CDS 25.0%
! GTATCAGATAAAATCTACAA+AGG + chr1.2:77501999-77502018 MS.gene006471:CDS 25.0%
! TCTATAGTAAAAGTGGTATA+CGG - chr1.2:77504486-77504505 None:intergenic 25.0%
! TGCTTATTATTTAACCAAAC+AGG + chr1.2:77503403-77503422 MS.gene006471:intron 25.0%
! TTCAACATCAACAAAATGAT+AGG - chr1.2:77501838-77501857 None:intergenic 25.0%
!! ATCAGGTTTTCTATTTAGAA+GGG + chr1.2:77502947-77502966 MS.gene006471:intron 25.0%
!! CAAATGCTCTTTCTTTTATT+TGG - chr1.2:77503901-77503920 None:intergenic 25.0%
!! CTACATTAGAATGGTATTTT+AGG + chr1.2:77502582-77502601 MS.gene006471:CDS 25.0%
!! TAATATTGGTTACATGTTGT+AGG + chr1.2:77502993-77503012 MS.gene006471:intron 25.0%
!! TATCAGGTTTTCTATTTAGA+AGG + chr1.2:77502946-77502965 MS.gene006471:intron 25.0%
!! TTATACAAAGTATCAAGTGT+GGG + chr1.2:77504270-77504289 MS.gene006471:CDS 25.0%
!!! ATGGTATTTTAGGACTTTTA+TGG + chr1.2:77502592-77502611 MS.gene006471:CDS 25.0%
!!! ATTTGGTTTTTATGTGTGTA+TGG - chr1.2:77503884-77503903 None:intergenic 25.0%
!!! CAAATAAAAGAAAGAGCATT+TGG + chr1.2:77503899-77503918 MS.gene006471:CDS 25.0%
!!! CTTGTTTTGTTTATTTCAGT+TGG - chr1.2:77501771-77501790 None:intergenic 25.0%
!!! TAAATTGTTTTATGCATAGG+TGG + chr1.2:77503826-77503845 MS.gene006471:intron 25.0%
!!! TCCTAAATTGTTTTATGCAT+AGG + chr1.2:77503823-77503842 MS.gene006471:intron 25.0%
!!! TTTAGGACATTGTTTTTGTT+TGG - chr1.2:77501864-77501883 None:intergenic 25.0%
!!! TTTGGTTTTTATGTGTGTAT+GGG - chr1.2:77503883-77503902 None:intergenic 25.0%
!!! TTTTTTCTACAGATAAGAGA+TGG + chr1.2:77503462-77503481 MS.gene006471:intron 25.0%
AAAAGACCATGAAGTGAAAT+GGG + chr1.2:77502412-77502431 MS.gene006471:CDS 30.0%
AAACTTTGAATTGGACAAAC+AGG + chr1.2:77505319-77505338 MS.gene006471:intron 30.0%
AAATTTGTACCTTCAGCTTT+AGG - chr1.2:77502326-77502345 None:intergenic 30.0%
AATATAGGAGAGTGATGTAT+AGG + chr1.2:77502522-77502541 MS.gene006471:CDS 30.0%
AATCAACAATCCCACAAAAT+TGG + chr1.2:77502796-77502815 MS.gene006471:CDS 30.0%
AATCAGTAAATATTTGGGCA+CGG + chr1.2:77502219-77502238 MS.gene006471:CDS 30.0%
AATCCAAGGTAAAATAGTTG+TGG - chr1.2:77503605-77503624 None:intergenic 30.0%
ACAAAAACAATGTCCTAAAG+TGG + chr1.2:77501865-77501884 MS.gene006471:CDS 30.0%
ACAAAGTTAGGTAATCAAGT+GGG + chr1.2:77504175-77504194 MS.gene006471:CDS 30.0%
ACTGGAAAATCTTCTTGATA+AGG - chr1.2:77505405-77505424 None:intergenic 30.0%
AGGTGTTAAGATATGATGTA+CGG - chr1.2:77504458-77504477 None:intergenic 30.0%
AGTAATGTGATTCCTTCAAT+AGG - chr1.2:77502245-77502264 None:intergenic 30.0%
ATAGTTCAACAATCTTACCT+TGG + chr1.2:77501795-77501814 MS.gene006471:CDS 30.0%
ATATAGGAGAGTGATGTATA+GGG + chr1.2:77502523-77502542 MS.gene006471:CDS 30.0%
ATTAATTCAAGTGCCAATGA+TGG + chr1.2:77505004-77505023 MS.gene006471:intron 30.0%
CAACAACATATATACTAGTC+AGG - chr1.2:77503682-77503701 None:intergenic 30.0%
CCATCTTTCTGACTTATTAT+AGG - chr1.2:77504302-77504321 None:intergenic 30.0%
CCTATAATAAGTCAGAAAGA+TGG + chr1.2:77504299-77504318 MS.gene006471:CDS 30.0%
CTCTTATATTTAGGGATGAA+GGG + chr1.2:77503101-77503120 MS.gene006471:intron 30.0%
CTTATCTATTAGCATAGCAT+AGG + chr1.2:77503202-77503221 MS.gene006471:intron 30.0%
GATAAAATCTACAAAGGTCA+CGG + chr1.2:77502005-77502024 MS.gene006471:CDS 30.0%
GGGATGAATCAGTAAATATT+TGG + chr1.2:77502213-77502232 MS.gene006471:CDS 30.0%
GGTCAAGATAATATGTTACA+AGG - chr1.2:77503967-77503986 None:intergenic 30.0%
GTAAAAACAAAAGTTACCTC+TGG - chr1.2:77504381-77504400 None:intergenic 30.0%
TAAAAGACCATGAAGTGAAA+TGG + chr1.2:77502411-77502430 MS.gene006471:CDS 30.0%
TAATATTAGGAATAGCACCA+AGG - chr1.2:77501815-77501834 None:intergenic 30.0%
TATTTGCACTTAGAGACATT+TGG + chr1.2:77503164-77503183 MS.gene006471:intron 30.0%
TCTATTGCGAAACTTTGAAT+TGG + chr1.2:77505310-77505329 MS.gene006471:intron 30.0%
TTAACTATTAACAGCTCAGT+TGG - chr1.2:77504142-77504161 None:intergenic 30.0%
TTATTTCAGTTGGAGATAGA+GGG - chr1.2:77501761-77501780 None:intergenic 30.0%
TTGCATTATCATCAATGTCA+AGG - chr1.2:77503988-77504007 None:intergenic 30.0%
TTGCTTTCGAAAAAATTAGC+TGG - chr1.2:77505462-77505481 None:intergenic 30.0%
TTTATCAAACCTTGATGCTA+TGG - chr1.2:77501655-77501674 None:intergenic 30.0%
TTTATTTCAGTTGGAGATAG+AGG - chr1.2:77501762-77501781 None:intergenic 30.0%
! ATAGAAGCATGACACTTTAA+GGG - chr1.2:77502192-77502211 None:intergenic 30.0%
! CTTATACAAAGTATCAAGTG+TGG + chr1.2:77504269-77504288 MS.gene006471:CDS 30.0%
! GTTACATGTAGCAACTATTT+TGG - chr1.2:77502369-77502388 None:intergenic 30.0%
! TAAAGTGTCATGCTTCTATA+GGG + chr1.2:77502193-77502212 MS.gene006471:CDS 30.0%
! TATAGAAGCATGACACTTTA+AGG - chr1.2:77502193-77502212 None:intergenic 30.0%
! TTAAAGTGTCATGCTTCTAT+AGG + chr1.2:77502192-77502211 MS.gene006471:CDS 30.0%
! TTAGGACTTTTATGGATGTT+GGG + chr1.2:77502600-77502619 MS.gene006471:CDS 30.0%
! TTTCACTTCATGGTCTTTTA+TGG - chr1.2:77502411-77502430 None:intergenic 30.0%
!! AGTGTATATGGATGGTTTTA+TGG + chr1.2:77502685-77502704 MS.gene006471:CDS 30.0%
!! TTTAGGACTTTTATGGATGT+TGG + chr1.2:77502599-77502618 MS.gene006471:CDS 30.0%
!!! GGTCTTAAGTTGTTTTTCTT+TGG + chr1.2:77503425-77503444 MS.gene006471:intron 30.0%
AAAAGTGGCAGCATAAAAGT+TGG + chr1.2:77503564-77503583 MS.gene006471:CDS 35.0%
AAACAACTTAAGACCCTGTT+TGG - chr1.2:77503420-77503439 None:intergenic 35.0%
AAAGACCATGAAGTGAAATG+GGG + chr1.2:77502413-77502432 MS.gene006471:CDS 35.0%
AAAGAGTCAATTGCCAAAAG+GGG + chr1.2:77502095-77502114 MS.gene006471:CDS 35.0%
AAAGTGGCAGCATAAAAGTT+GGG + chr1.2:77503565-77503584 MS.gene006471:CDS 35.0%
AACATATATACTAGTCAGGC+AGG - chr1.2:77503678-77503697 None:intergenic 35.0%
AACTAGACATTGTGCAATCA+TGG - chr1.2:77501685-77501704 None:intergenic 35.0%
AATAAAAGAAGCTGCCAAGA+GGG + chr1.2:77504084-77504103 MS.gene006471:CDS 35.0%
AATTACCCCATTTCACTTCA+TGG - chr1.2:77502421-77502440 None:intergenic 35.0%
ACAATCCCACAAAATTGGTA+AGG + chr1.2:77502801-77502820 MS.gene006471:intron 35.0%
ACATGGATCCTACATTAGAA+TGG + chr1.2:77502573-77502592 MS.gene006471:CDS 35.0%
ATGAAGTGAAATGGGGTAAT+TGG + chr1.2:77502420-77502439 MS.gene006471:CDS 35.0%
CAAAGAGTCAATTGCCAAAA+GGG + chr1.2:77502094-77502113 MS.gene006471:CDS 35.0%
CATCAATGCAAAGTTGCAAA+AGG + chr1.2:77504015-77504034 MS.gene006471:CDS 35.0%
CTTCTTGATAAGGAACATGA+TGG - chr1.2:77505395-77505414 None:intergenic 35.0%
GACAAAGTTAGGTAATCAAG+TGG + chr1.2:77504174-77504193 MS.gene006471:CDS 35.0%
GCTCTTATATTTAGGGATGA+AGG + chr1.2:77503100-77503119 MS.gene006471:intron 35.0%
GGTATGGAGAAAAAATCACA+AGG + chr1.2:77502162-77502181 MS.gene006471:CDS 35.0%
GGTGTTAAGATATGATGTAC+GGG - chr1.2:77504457-77504476 None:intergenic 35.0%
GTATAAGAAGCTCTTCTTTG+TGG - chr1.2:77504256-77504275 None:intergenic 35.0%
GTGATCATGATAATCAGCTA+TGG - chr1.2:77503945-77503964 None:intergenic 35.0%
GTTACATGTTGTAGGTTTGT+TGG + chr1.2:77503001-77503020 MS.gene006471:intron 35.0%
TAATAAAAGAAGCTGCCAAG+AGG + chr1.2:77504083-77504102 MS.gene006471:CDS 35.0%
TAGGAACTTACAAGACTTTG+AGG + chr1.2:77503221-77503240 MS.gene006471:intron 35.0%
TAGTAGATGACAACCACTTT+AGG - chr1.2:77501881-77501900 None:intergenic 35.0%
TATAGGAGAGTGATGTATAG+GGG + chr1.2:77502524-77502543 MS.gene006471:CDS 35.0%
TCAAAAATGCAAATAGCCCT+TGG - chr1.2:77502740-77502759 None:intergenic 35.0%
TCAAAGAGTCAATTGCCAAA+AGG + chr1.2:77502093-77502112 MS.gene006471:CDS 35.0%
TCATCCAACAAAGAAGTAAC+CGG - chr1.2:77504223-77504242 None:intergenic 35.0%
TCTAATGTAGGATCCATGTA+AGG - chr1.2:77502572-77502591 None:intergenic 35.0%
TCTTGTGTACCATTCACAAT+TGG + chr1.2:77502137-77502156 MS.gene006471:CDS 35.0%
TGAAGTGAAATGGGGTAATT+GGG + chr1.2:77502421-77502440 MS.gene006471:CDS 35.0%
TGAGACATTTGTTCCTTACA+TGG + chr1.2:77502556-77502575 MS.gene006471:CDS 35.0%
TTTATGGATGTTGGGGAATT+TGG + chr1.2:77502608-77502627 MS.gene006471:CDS 35.0%
! AAAAGTGGTATACGGTGTTA+AGG - chr1.2:77504478-77504497 None:intergenic 35.0%
! ACAAGACTTTGAGGAGTTTA+TGG + chr1.2:77503230-77503249 MS.gene006471:intron 35.0%
! AGACAAATATAAGCCCCTTT+TGG - chr1.2:77502111-77502130 None:intergenic 35.0%
! ATGACACCTTACCAATTTTG+TGG - chr1.2:77502810-77502829 None:intergenic 35.0%
! GTAATTGGGCTTTTCATGTA+GGG + chr1.2:77502435-77502454 MS.gene006471:CDS 35.0%
! GTACCACAACTATTTTACCT+TGG + chr1.2:77503599-77503618 MS.gene006471:intron 35.0%
! TAGGACTTTTATGGATGTTG+GGG + chr1.2:77502601-77502620 MS.gene006471:CDS 35.0%
! TATGGTATTTTCTGCCACTA+AGG - chr1.2:77503927-77503946 None:intergenic 35.0%
! TGACACCTTACCAATTTTGT+GGG - chr1.2:77502809-77502828 None:intergenic 35.0%
!!! GTATATGGATGGTTTTATGG+CGG + chr1.2:77502688-77502707 MS.gene006471:CDS 35.0%
!!! TATATGGATGGTTTTATGGC+GGG + chr1.2:77502689-77502708 MS.gene006471:CDS 35.0%
AAGGTAGTTGTTAGAGCCAA+AGG + chr1.2:77501933-77501952 MS.gene006471:CDS 40.0%
AAGTGGCAGCATAAAAGTTG+GGG + chr1.2:77503566-77503585 MS.gene006471:CDS 40.0%
AATAAGTCAGAAAGATGGGC+TGG + chr1.2:77504304-77504323 MS.gene006471:CDS 40.0%
ACAACCGGTTACTTCTTTGT+TGG + chr1.2:77504216-77504235 MS.gene006471:CDS 40.0%
AGAATACAGACATAGTGCTG+TGG + chr1.2:77505355-77505374 MS.gene006471:CDS 40.0%
AGAGGCTGATATAACTTTGG+TGG + chr1.2:77503485-77503504 MS.gene006471:CDS 40.0%
AGCTCAATGAATGTAAACGG+AGG - chr1.2:77502035-77502054 None:intergenic 40.0%
CCATACCAACCAATTGTGAA+TGG - chr1.2:77502149-77502168 None:intergenic 40.0%
GATTGGGAATTCCTGAAAAG+TGG + chr1.2:77503549-77503568 MS.gene006471:CDS 40.0%
GCTCAATGAATGTAAACGGA+GGG - chr1.2:77502034-77502053 None:intergenic 40.0%
GGAAATGCAGTGTATATGGA+TGG + chr1.2:77502677-77502696 MS.gene006471:CDS 40.0%
GTCAGAATGATTGCTACTGT+GGG + chr1.2:77503507-77503526 MS.gene006471:CDS 40.0%
GTGTACCATTCACAATTGGT+TGG + chr1.2:77502141-77502160 MS.gene006471:CDS 40.0%
TAGTATTCCTAGACAAGCCA+AGG + chr1.2:77501914-77501933 MS.gene006471:CDS 40.0%
TCCATATACACTGCATTTCC+CGG - chr1.2:77502677-77502696 None:intergenic 40.0%
TCTACAGATAAGAGATGGAG+AGG + chr1.2:77503467-77503486 MS.gene006471:intron 40.0%
TGGAGAGGCTGATATAACTT+TGG + chr1.2:77503482-77503501 MS.gene006471:CDS 40.0%
TTGCAAAAGGTCAAAGCAAG+TGG + chr1.2:77504028-77504047 MS.gene006471:CDS 40.0%
TTGGAGATAGAGGGTCTAAA+GGG - chr1.2:77501752-77501771 None:intergenic 40.0%
! CCATTCACAATTGGTTGGTA+TGG + chr1.2:77502146-77502165 MS.gene006471:CDS 40.0%
! GGTAATTGGGCTTTTCATGT+AGG + chr1.2:77502434-77502453 MS.gene006471:CDS 40.0%
!! AAGAGCATTTGGAACCTTAG+TGG + chr1.2:77503910-77503929 MS.gene006471:CDS 40.0%
!! CTAGTGGTGGACTTAACAAA+AGG + chr1.2:77501969-77501988 MS.gene006471:CDS 40.0%
!! GATGTTGGGGAATTTGGTTT+TGG + chr1.2:77502614-77502633 MS.gene006471:CDS 40.0%
!! GGGCTATTTGCATTTTTGAG+AGG + chr1.2:77502741-77502760 MS.gene006471:CDS 40.0%
!! TAGGTAATCAAGTGGGTTAC+CGG + chr1.2:77504182-77504201 MS.gene006471:CDS 40.0%
!! TGCATTTTTGAGAGGACTTC+TGG + chr1.2:77502749-77502768 MS.gene006471:CDS 40.0%
!! TTGGCTTGTCTAGGAATACT+AGG - chr1.2:77501915-77501934 None:intergenic 40.0%
!! TTTGGCTCTAACAACTACCT+TGG - chr1.2:77501934-77501953 None:intergenic 40.0%
!!! CTTTTATGCTGCCACTTTTC+AGG - chr1.2:77503563-77503582 None:intergenic 40.0%
AAGGTCAAAGCAAGTGGCTT+TGG + chr1.2:77504034-77504053 MS.gene006471:CDS 45.0%
ACCAAGGAAGAGTTACTGGA+CGG + chr1.2:77504060-77504079 MS.gene006471:CDS 45.0%
AGAGAGGATTCGAACGAACT+CGG + chr1.2:77505045-77505064 MS.gene006471:intron 45.0%
CCAGTAATGCCAACAGTTCA+GGG + chr1.2:77505420-77505439 MS.gene006471:CDS 45.0%
CCATATACACTGCATTTCCC+GGG - chr1.2:77502676-77502695 None:intergenic 45.0%
GAACACCAAGGAAGAGTTAC+TGG + chr1.2:77504056-77504075 MS.gene006471:CDS 45.0%
GGTCAGAATGATTGCTACTG+TGG + chr1.2:77503506-77503525 MS.gene006471:CDS 45.0%
GTACCTATGCCTAAAGCTGA+AGG + chr1.2:77502314-77502333 MS.gene006471:CDS 45.0%
GTAGGGTTTAATGCTAGAGC+AGG + chr1.2:77502452-77502471 MS.gene006471:CDS 45.0%
GTTGGAGATAGAGGGTCTAA+AGG - chr1.2:77501753-77501772 None:intergenic 45.0%
TAAGTCCACCACTAGCTCAT+GGG - chr1.2:77501964-77501983 None:intergenic 45.0%
TAGCTCATGGGTTTCACCTT+TGG - chr1.2:77501952-77501971 None:intergenic 45.0%
TCAAAACCACCCTGAACTGT+TGG - chr1.2:77505432-77505451 None:intergenic 45.0%
TCCAGTAATGCCAACAGTTC+AGG + chr1.2:77505419-77505438 MS.gene006471:CDS 45.0%
TTAAGTCCACCACTAGCTCA+TGG - chr1.2:77501965-77501984 None:intergenic 45.0%
! AAGTTACCTCTGGCTCCAAA+CGG - chr1.2:77504371-77504390 None:intergenic 45.0%
! ACTTGTTGCACCTCTCCATT+AGG - chr1.2:77502716-77502735 None:intergenic 45.0%
! TAATGTGGCTTGGAGACACA+TGG + chr1.2:77502772-77502791 MS.gene006471:CDS 45.0%
! TGAGAGGACTTCTGGTAATG+TGG + chr1.2:77502757-77502776 MS.gene006471:CDS 45.0%
!! ACAACTACCTTGGCTTGTCT+AGG - chr1.2:77501924-77501943 None:intergenic 45.0%
!! GTACCTTCAGCTTTAGGCAT+AGG - chr1.2:77502320-77502339 None:intergenic 45.0%
!! TATGCATAGGTGGCTCTAAC+AGG + chr1.2:77503836-77503855 MS.gene006471:intron 45.0%
!!! TTCAGGGTGGTTTTGAACTC+AGG + chr1.2:77505436-77505455 MS.gene006471:CDS 45.0%
!! ATAAAAAACAAAAAAAATAT+AGG + chr1.2:77502507-77502526 MS.gene006471:CDS 5.0%
ACCGTCCAGTAACTCTTCCT+TGG - chr1.2:77504064-77504083 None:intergenic 50.0%
AGGTGAAACCCATGAGCTAG+TGG + chr1.2:77501953-77501972 MS.gene006471:CDS 50.0%
ATAGTGCTGTGGCACACAGT+TGG + chr1.2:77505366-77505385 MS.gene006471:CDS 50.0%
ATTTCCCGGGCAATCAACCT+TGG - chr1.2:77502663-77502682 None:intergenic 50.0%
ATTTGGGCACGGCCTATTGA+AGG + chr1.2:77502230-77502249 MS.gene006471:CDS 50.0%
CCCGGGAAATGCAGTGTATA+TGG + chr1.2:77502673-77502692 MS.gene006471:CDS 50.0%
CCCTGAACTGTTGGCATTAC+TGG - chr1.2:77505423-77505442 None:intergenic 50.0%
CCGGTTGTCCACTAATCAAC+CGG - chr1.2:77504204-77504223 None:intergenic 50.0%
CTGGAGGGTTCTATGCTGAT+AGG + chr1.2:77504323-77504342 MS.gene006471:CDS 50.0%
GATAGAGGGTCTAAAGGGTG+AGG - chr1.2:77501747-77501766 None:intergenic 50.0%
GCTGAGGCTAGAATTAGGCT+CGG + chr1.2:77504109-77504128 MS.gene006471:CDS 50.0%
GGGAAGCTGAGGCTAGAATT+AGG + chr1.2:77504104-77504123 MS.gene006471:CDS 50.0%
GTAATGCCAACAGTTCAGGG+TGG + chr1.2:77505423-77505442 MS.gene006471:CDS 50.0%
TGAAACCCATGAGCTAGTGG+TGG + chr1.2:77501956-77501975 MS.gene006471:CDS 50.0%
TTCTATGCTGATAGGAGCCG+TGG + chr1.2:77504331-77504350 MS.gene006471:CDS 50.0%
TTTCCCGGGCAATCAACCTT+GGG - chr1.2:77502662-77502681 None:intergenic 50.0%
! AGAGGTGCAACAAGTGCCAA+GGG + chr1.2:77502721-77502740 MS.gene006471:CDS 50.0%
! AGCTGATAGCTTGCAACCCA+AGG + chr1.2:77502643-77502662 MS.gene006471:CDS 50.0%
! CCGGTTGATTAGTGGACAAC+CGG + chr1.2:77504201-77504220 MS.gene006471:CDS 50.0%
! GAGATGATGGCTTAGCCGTT+TGG + chr1.2:77504353-77504372 MS.gene006471:CDS 50.0%
! GGACTTCTGGTAATGTGGCT+TGG + chr1.2:77502762-77502781 MS.gene006471:CDS 50.0%
! GTGGGTTACCGGTTGATTAG+TGG + chr1.2:77504193-77504212 MS.gene006471:CDS 50.0%
!! AAGTCAGAAAGATGGGCTGG+AGG + chr1.2:77504307-77504326 MS.gene006471:CDS 50.0%
!! AGTCAGAAAGATGGGCTGGA+GGG + chr1.2:77504308-77504327 MS.gene006471:CDS 50.0%
!! CAAGTGGCTTTGGAACACCA+AGG + chr1.2:77504044-77504063 MS.gene006471:CDS 50.0%
!!! GGTTTTATGGCGGGTCCTAA+TGG + chr1.2:77502698-77502717 MS.gene006471:CDS 50.0%
CGGCTAAGCCATCATCTCCA+CGG - chr1.2:77504351-77504370 None:intergenic 55.0%
GATAGGAGCCGTGGAGATGA+TGG + chr1.2:77504340-77504359 MS.gene006471:CDS 55.0%
TCTAGCCTCAGCTTCCCTCT+TGG - chr1.2:77504101-77504120 None:intergenic 55.0%
! CAACCCAAGGTTGATTGCCC+GGG + chr1.2:77502656-77502675 MS.gene006471:CDS 55.0%
! GAGAGGTGCAACAAGTGCCA+AGG + chr1.2:77502720-77502739 MS.gene006471:CDS 55.0%
! GCAACCCAAGGTTGATTGCC+CGG + chr1.2:77502655-77502674 MS.gene006471:CDS 55.0%
!! TATGGCGGGTCCTAATGGAG+AGG + chr1.2:77502703-77502722 MS.gene006471:CDS 55.0%
AGCTGCCAAGAGGGAAGCTG+AGG + chr1.2:77504093-77504112 MS.gene006471:CDS 60.0%
! GCTTAGCCGTTTGGAGCCAG+AGG + chr1.2:77504362-77504381 MS.gene006471:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 77501648 77505494 77501648 ID=MS.gene006471
chr1.2 mRNA 77501648 77505494 77501648 ID=MS.gene006471.t1;Parent=MS.gene006471
chr1.2 exon 77501648 77502817 77501648 ID=MS.gene006471.t1.exon1;Parent=MS.gene006471.t1
chr1.2 CDS 77501648 77502817 77501648 ID=cds.MS.gene006471.t1;Parent=MS.gene006471.t1
chr1.2 exon 77503474 77503587 77503474 ID=MS.gene006471.t1.exon2;Parent=MS.gene006471.t1
chr1.2 CDS 77503474 77503587 77503474 ID=cds.MS.gene006471.t1;Parent=MS.gene006471.t1
chr1.2 exon 77503845 77504383 77503845 ID=MS.gene006471.t1.exon3;Parent=MS.gene006471.t1
chr1.2 CDS 77503845 77504383 77503845 ID=cds.MS.gene006471.t1;Parent=MS.gene006471.t1
chr1.2 exon 77505341 77505494 77505341 ID=MS.gene006471.t1.exon4;Parent=MS.gene006471.t1
chr1.2 CDS 77505341 77505494 77505341 ID=cds.MS.gene006471.t1;Parent=MS.gene006471.t1
Gene Sequence

>MS.gene006471

ATGACCATAGCATCAAGGTTTGATAAAGCAACAACCATGATTGCACAATGTCTAGTTCTAGCATTTTTTCTTCAATTCAACTTCATTAATAGTTTGCCTCACCCTTTAGACCCTCTATCTCCAACTGAAATAAACAAAACAAGACACATAGTTCAACAATCTTACCTTGGTGCTATTCCTAATATTACCTATCATTTTGTTGATGTTGAAGAACCAAACAAAAACAATGTCCTAAAGTGGTTGTCATCTACTACAAAACAAAAGCCTAGTATTCCTAGACAAGCCAAGGTAGTTGTTAGAGCCAAAGGTGAAACCCATGAGCTAGTGGTGGACTTAACAAAAGGCTCAATTGTATCAGATAAAATCTACAAAGGTCACGGATACCCTCCGTTTACATTCATTGAGCTTTTCAAAGCTAGTAAATTGCCTCTTACATATTCAAAATTCAAAGAGTCAATTGCCAAAAGGGGCTTATATTTGTCTGAAATTTCTTGTGTACCATTCACAATTGGTTGGTATGGAGAAAAAATCACAAGGAGAGCCCTTAAAGTGTCATGCTTCTATAGGGATGAATCAGTAAATATTTGGGCACGGCCTATTGAAGGAATCACATTACTAGTTGATGTTGATTTAATGAAGATTATTATGTATAATGATAGATACAGGGTACCTATGCCTAAAGCTGAAGGTACAAATTTTCAATCTTCAAGTAAAGGGTCCAAAATAGTTGCTACATGTAACATATCAAATATTGGATTTACCATAAAAGACCATGAAGTGAAATGGGGTAATTGGGCTTTTCATGTAGGGTTTAATGCTAGAGCAGGAATGATTATATCAACTGCTTCTATATTTGATGATAAAAAACAAAAAAAATATAGGAGAGTGATGTATAGGGGTCATGTGTCTGAGACATTTGTTCCTTACATGGATCCTACATTAGAATGGTATTTTAGGACTTTTATGGATGTTGGGGAATTTGGTTTTGGACGTTCAGCTGATAGCTTGCAACCCAAGGTTGATTGCCCGGGAAATGCAGTGTATATGGATGGTTTTATGGCGGGTCCTAATGGAGAGGTGCAACAAGTGCCAAGGGCTATTTGCATTTTTGAGAGGACTTCTGGTAATGTGGCTTGGAGACACATGGAAATCAACAATCCCACAAAATTGGTAAGGTGTCATATATTATTTTTGTTATACTCCCTTCGTCTATAAATATATGATTTTATTATTGACAAAAATACGAGAATTAATAAAGTCGATAGTTATGTTAAATTGATTGACAATTGGTATTATTTTATCAGGTTTTCTATTTAGAAGGGAAAATTGATTCATGTTTTCATAGTAATATTGGTTACATGTTGTAGGTTTGTTGGTAAAATAAATAAATAATCTAGTTAAAATTTTGAAAAAAAAAAGTCCTATAAAAAGGATCAAGAAAAACCTATAAATGCTCTTATATTTAGGGATGAAGGGCATTTTCAATTGATGTTGAAGCTATTTGAAATATATGGTCTATTTGCACTTAGAGACATTTGGATTGAAATATTTAAACTTATCTATTAGCATAGCATAGGAACTTACAAGACTTTGAGGAGTTTATGGAATCACTTTTTAACATGTTCATAACTTGTTTTCAACTTATTTTTGTAAACTCTTTAGGATAATTTATAAAACAGTATATAGCTTATACAAAAACATTTTGACTTTTTTTTTATAAAGAAAATAGTTTATTCATAAATGTTATGCTCTAAGTGCTTATTATTTAACCAAACAGGGTCTTAAGTTGTTTTTCTTTGGACACATTTGATGTGTTTTTTCTACAGATAAGAGATGGAGAGGCTGATATAACTTTGGTGGTCAGAATGATTGCTACTGTGGGTAACTACGATTATATTCTTGATTGGGAATTCCTGAAAAGTGGCAGCATAAAAGTTGGGGTAAAATTCTTGTACCACAACTATTTTACCTTGGATTTCTTTTTTTTTTTTTCGTTGAAAGACCTTAGAATTTATATTACTTTGGTTCCTGCCTGACTAGTATATATGTTGTTGAGTTATTTTAATTTACTATTCAATTACAAAGGAATATAATCATTCCTTACAATAGCAAAATGATAAATTAATGTAACATACATTTAGTTTTAAGTCAAACAAAAATGCACTTATCCTAATATCCTAAATTGTTTTATGCATAGGTGGCTCTAACAGGTGTATTAGAAATGAAAGCAGTCCCATACACACATAAAAACCAAATAAAAGAAAGAGCATTTGGAACCTTAGTGGCAGAAAATACCATAGCTGATTATCATGATCACCTTGTAACATATTATCTTGACCTTGACATTGATGATAATGCAAACTCATTCATCAATGCAAAGTTGCAAAAGGTCAAAGCAAGTGGCTTTGGAACACCAAGGAAGAGTTACTGGACGGTAATAAAAGAAGCTGCCAAGAGGGAAGCTGAGGCTAGAATTAGGCTCGGCTTAGAGCCAACTGAGCTGTTAATAGTTAACACTAATAAACTGACAAAGTTAGGTAATCAAGTGGGTTACCGGTTGATTAGTGGACAACCGGTTACTTCTTTGTTGGATGATGATGATTATCCACAAAGAAGAGCTTCTTATACAAAGTATCAAGTGTGGGTTACTCCCTATAATAAGTCAGAAAGATGGGCTGGAGGGTTCTATGCTGATAGGAGCCGTGGAGATGATGGCTTAGCCGTTTGGAGCCAGAGGTAACTTTTGTTTTTACTTTAGTGGCATTTAAAAAAGTTAGTTGTGTTATTTCGAGTATTTTGAGTCTTTCCCGTACATCATATCTTAACACCTTAACACCGTATACCACTTTTACTATAGATATTATTGGAATGGGAGAGAGAACAAACATTAGAAGAGAGATGAGCATAATTTCAAACTCAAAATTGTATAAATATATGGTATTTGTAAAAAATATTTCTTTAAAAAAGTCTTGCCAAAAATTGTAGATTTATATATTAATTCTTTTAAAAAAATAATACAAAATATCACTTTTTATTTTAGATAATTAGTGATTTGTTTTAGATCTACAAATTTTACTCTTACTGAAATTGATTCTTGTAGTACTCATTTTAATCTTTATTTTAAGAGACTAAAATGATAAGTTCTACATATTATATGGACTTATTTCAATGGAATAAATTTTGAAGAGAATGAAACAAAACAATGAGTATAAAAGTAAAAAGTGATATATTATTAAAAATTAAAAATATTTTTATAAAGATTTAAAAAACAAATGATATATTTTTATGTATCGATTTTTTTTTTTAAATTGGGGAAGGATTTTTTTAATAAAAAAAATTAGGAAGGGGGAAATTTTATTAATTCAAGTGCCAATGATGGTCATTTTACAAATATTTTAGAGAGGATTCGAACGAACTCGGTAAGACTAAGCTCTTACTAACCTAACACCTCAATTTTTTTTTATTACTTCAATTTTCATCTTTATGGTAATTCTACTAAATTAGGATATAAAAGAATTTAGTGAAAGTTTGTCTGAATAGCAAAAAGACTATACTGTATAATATGTTGTCTTCTATTTGTCAAAAAAAAAAATAAATATGTTGTCTTCTTGGTCAATATTTTTAATGAAATAAGAAAAATTCAGCTTATTAATCAAATTTTATCTATTGCGAAACTTTGAATTGGACAAACAGGAACAGAGAAATTGAGAATACAGACATAGTGCTGTGGCACACAGTTGGAATCCATCATGTTCCTTATCAAGAAGATTTTCCAGTAATGCCAACAGTTCAGGGTGGTTTTGAACTCAGGCCAGCTAATTTTTTCGAAAGCAATCCATTGCTTTGA
Protein sequence

>MS.gene006471.t1

MTIASRFDKATTMIAQCLVLAFFLQFNFINSLPHPLDPLSPTEINKTRHIVQQSYLGAIPNITYHFVDVEEPNKNNVLKWLSSTTKQKPSIPRQAKVVVRAKGETHELVVDLTKGSIVSDKIYKGHGYPPFTFIELFKASKLPLTYSKFKESIAKRGLYLSEISCVPFTIGWYGEKITRRALKVSCFYRDESVNIWARPIEGITLLVDVDLMKIIMYNDRYRVPMPKAEGTNFQSSSKGSKIVATCNISNIGFTIKDHEVKWGNWAFHVGFNARAGMIISTASIFDDKKQKKYRRVMYRGHVSETFVPYMDPTLEWYFRTFMDVGEFGFGRSADSLQPKVDCPGNAVYMDGFMAGPNGEVQQVPRAICIFERTSGNVAWRHMEINNPTKLIRDGEADITLVVRMIATVGNYDYILDWEFLKSGSIKVGVALTGVLEMKAVPYTHKNQIKERAFGTLVAENTIADYHDHLVTYYLDLDIDDNANSFINAKLQKVKASGFGTPRKSYWTVIKEAAKREAEARIRLGLEPTELLIVNTNKLTKLGNQVGYRLISGQPVTSLLDDDDYPQRRASYTKYQVWVTPYNKSERWAGGFYADRSRGDDGLAVWSQRNREIENTDIVLWHTVGIHHVPYQEDFPVMPTVQGGFELRPANFFESNPLL