AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene33547

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33547.t1 MTR_1g104590 96.439 674 23 1 1 674 3 675 0.0 1357
MS.gene33547.t1 MTR_4g117660 56.101 672 288 3 3 671 7 674 0.0 814
MS.gene33547.t1 MTR_4g045887 57.079 671 281 4 1 670 7 671 0.0 807
MS.gene33547.t1 MTR_4g117610 56.083 674 284 4 3 671 1 667 0.0 793
MS.gene33547.t1 MTR_4g117670 60.357 560 221 1 111 670 31 589 0.0 743
MS.gene33547.t1 MTR_1g104550 52.374 653 299 3 5 657 18 658 0.0 741
MS.gene33547.t1 MTR_3g080500 47.032 657 333 9 26 673 78 728 0.0 610
MS.gene33547.t1 MTR_3g077080 29.662 681 413 23 26 657 8 671 4.58e-79 266
MS.gene33547.t1 MTR_3g077080 29.662 681 413 23 26 657 73 736 1.47e-78 266
MS.gene33547.t1 MTR_8g069505 29.037 675 425 18 26 657 8 671 2.57e-76 258
MS.gene33547.t1 MTR_8g069505 29.037 675 425 18 26 657 32 695 3.80e-76 259
MS.gene33547.t1 MTR_8g069505 29.037 675 425 18 26 657 69 732 5.79e-76 259
MS.gene33547.t1 MTR_8g069505 29.037 675 425 18 26 657 82 745 1.01e-75 258
MS.gene33547.t1 MTR_5g033170 29.394 677 421 20 26 657 44 708 2.84e-74 254
MS.gene33547.t1 MTR_5g033170 29.323 665 413 20 26 645 44 696 1.30e-71 246
MS.gene33547.t1 MTR_3g077080 31.073 531 330 16 147 657 1 515 4.02e-71 241
MS.gene33547.t1 MTR_8g069505 28.571 497 303 16 26 481 8 493 7.64e-49 180
MS.gene33547.t1 MTR_8g069505 28.571 497 303 16 26 481 82 567 1.04e-48 181
MS.gene33547.t1 MTR_8g069505 28.571 497 303 16 26 481 69 554 1.49e-48 181
MS.gene33547.t1 MTR_8g069505 28.571 497 303 16 26 481 82 567 1.91e-48 181
MS.gene33547.t1 MTR_4g098910 40.594 101 56 2 59 158 27 124 6.35e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene33547.t1 AT1G31690 60.796 653 251 4 25 674 26 676 0.0 848
MS.gene33547.t1 AT1G31710 58.896 652 260 5 26 671 28 677 0.0 820
MS.gene33547.t1 AT1G31670 57.951 654 252 7 25 674 106 740 0.0 797
MS.gene33547.t1 AT4G14940 51.380 652 303 5 10 657 8 649 0.0 704
MS.gene33547.t1 AT4G12290 46.165 665 332 10 26 673 82 737 0.0 612
MS.gene33547.t1 AT1G62810 47.158 651 328 10 17 659 53 695 0.0 608
MS.gene33547.t1 AT3G43670 44.037 654 338 10 18 657 35 674 0.0 571
MS.gene33547.t1 AT4G12290 44.908 599 304 10 26 607 82 671 9.35e-179 524
MS.gene33547.t1 AT4G12280 52.249 289 130 2 390 670 5 293 8.11e-105 321
MS.gene33547.t1 AT4G12270 41.192 386 187 10 26 385 84 455 3.72e-91 291
MS.gene33547.t1 AT2G42490 29.161 679 419 19 26 657 80 743 3.58e-78 265

Find 163 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGGCTTACTGGTATATT+AGG 0.165498 1.3:-71540624 MS.gene33547:CDS
ATTGATGCTAAAGAAATTAT+TGG 0.173562 1.3:+71541532 None:intergenic
CACCTTTGTCAAGACAAATT+TGG 0.177990 1.3:-71540460 MS.gene33547:CDS
TTAAAATAGGTTGGGCTTAC+TGG 0.179307 1.3:-71540633 MS.gene33547:intron
ACAAAACAAGGAAATCAAAT+TGG 0.202546 1.3:-71540294 MS.gene33547:CDS
CCGTTTGGTCCAAAGCTTAA+AGG 0.225115 1.3:-71543372 MS.gene33547:CDS
CTTTGATCAGTTGGGCCAAT+TGG 0.227450 1.3:-71541588 MS.gene33547:intron
TACTTTGATTGTGGTGAATA+TGG 0.233955 1.3:-71541403 MS.gene33547:CDS
TACTCAGTTCCTTCAGCTTT+TGG 0.241847 1.3:+71543417 None:intergenic
CTTTAGCAGTTTGGAGTCTA+AGG 0.250428 1.3:-71540107 MS.gene33547:intron
AGGATTCCTCTCAAAGAAAT+TGG 0.255874 1.3:+71539833 None:intergenic
TACTGGTATATTAGGGATTA+AGG 0.267723 1.3:-71540616 MS.gene33547:CDS
AAAGAAATCACCACTTCATT+TGG 0.267968 1.3:+71541205 None:intergenic
CTTGAATGTCGAATCCTAAA+TGG 0.275025 1.3:+71541560 None:intergenic
ATTGGGTACCGTTTGCTTCC+AGG 0.303677 1.3:-71540276 MS.gene33547:CDS
TTCTTTGATTTGATCTGTAT+TGG 0.307370 1.3:+71540581 None:intergenic
AGAACAAGGATATTGTATTA+TGG 0.321872 1.3:-71539941 MS.gene33547:CDS
AGCAAAAGTGGATGCACAAT+TGG 0.336397 1.3:+71540252 None:intergenic
TATCTTGACCTTGACATTGA+TGG 0.340459 1.3:-71540492 MS.gene33547:CDS
CGAATGTTTAAACGGTTCAT+AGG 0.351625 1.3:+71543659 None:intergenic
TTGGGCTTACTGGTATATTA+GGG 0.355547 1.3:-71540623 MS.gene33547:CDS
TTGGTATGATTTGAGGATTA+TGG 0.360195 1.3:+71543953 None:intergenic
GTGATGATACTTTAGCAGTT+TGG 0.361600 1.3:-71540116 MS.gene33547:CDS
AGGAATATGACTGCATTCTA+TGG 0.363674 1.3:+71544022 None:intergenic
CAATACCTAGGAAAAGTTAT+TGG 0.365047 1.3:-71540413 MS.gene33547:CDS
ACAGATATGCCTTTAAGCTT+TGG 0.374151 1.3:+71543363 None:intergenic
AAAGCATTAGATATCTTAAC+AGG 0.379099 1.3:+71541286 None:intergenic
AGGTGGTGGAAGAAGAGTTT+TGG 0.380559 1.3:+71543839 None:intergenic
AATGTCAAGGTCAAGATAAT+AGG 0.382154 1.3:+71540497 None:intergenic
ACCATTCTTCACTTGGGTCT+TGG 0.384600 1.3:+71541437 None:intergenic
TTTGATCAGTTGGGCCAATT+GGG 0.389327 1.3:-71541587 MS.gene33547:intron
AAGAAATCACCACTTCATTT+GGG 0.391853 1.3:+71541206 None:intergenic
GATGATTATCCACAAATTAG+AGG 0.394794 1.3:-71540225 MS.gene33547:CDS
CATACAACAAAACTGAGAAA+TGG 0.397433 1.3:-71540170 MS.gene33547:CDS
GTGAATGCACCTCTAATTTG+TGG 0.399902 1.3:+71540216 None:intergenic
CTTGATGAAATGAGAATTGT+TGG 0.407335 1.3:-71543468 MS.gene33547:CDS
ATTTCATCATGTTCCTTCTC+AGG 0.409173 1.3:-71539907 MS.gene33547:CDS
TTGATTTCTGAAGGTGTTAG+AGG 0.415988 1.3:+71543987 None:intergenic
TTCTTCAACGAATGTTTAAA+CGG 0.416479 1.3:+71543651 None:intergenic
CCACTCAACGTAGGCATGAC+TGG 0.418913 1.3:+71539876 None:intergenic
TCTTCACTTGGGTCTTGGTA+TGG 0.419526 1.3:+71541442 None:intergenic
GTCAAGCCTTTGTCATAGTA+AGG 0.426454 1.3:-71543815 MS.gene33547:CDS
AAAAGTGAGATTGTGGTGTT+TGG 0.426480 1.3:+71543929 None:intergenic
TTGGGCCAATGCATAGGCTT+TGG 0.427838 1.3:+71539792 None:intergenic
CCATCCAAGGTCACTCCGTC+AGG 0.427909 1.3:-71543314 MS.gene33547:intron
GTGTAATACCATTCTTCACT+TGG 0.433020 1.3:+71541430 None:intergenic
GATTGTGGTGAATATGGCTT+TGG 0.433096 1.3:-71541397 MS.gene33547:CDS
ACTATGACTACGTTATAGAT+TGG 0.433768 1.3:-71541047 MS.gene33547:CDS
GTTTGGTTTGGTATGATTTG+AGG 0.437353 1.3:+71543946 None:intergenic
ATACAACAAAACTGAGAAAT+GGG 0.441699 1.3:-71540169 MS.gene33547:CDS
GTGAAGTGTTATTACAAGAA+TGG 0.446073 1.3:-71543543 MS.gene33547:CDS
CCAAGTGGTAGCATCAAACT+TGG 0.451289 1.3:-71541015 MS.gene33547:CDS
ATCCTTTGTATAGTACTTCA+CGG 0.458399 1.3:+71541485 None:intergenic
GGCTACCCTATCCTTACCTT+TGG 0.459203 1.3:-71543714 MS.gene33547:CDS
TGAGATTGTGGTGTTTGGTT+TGG 0.467176 1.3:+71543934 None:intergenic
GATTGAATGAGAGGTTTGTC+GGG 0.468617 1.3:+71543885 None:intergenic
GTTAGAGGGTCAAGTGGGTG+AGG 0.473682 1.3:+71544002 None:intergenic
CAAGATAATAGGTAAAGAAA+TGG 0.475626 1.3:+71540508 None:intergenic
GGATAGGGAGATTGAGAACA+AGG 0.479632 1.3:-71539955 MS.gene33547:CDS
TAATCATCAGTTAGCAAAAG+TGG 0.479949 1.3:+71540240 None:intergenic
TGATTGAATGAGAGGTTTGT+CGG 0.481894 1.3:+71543884 None:intergenic
TGTTCACCAAAGGTAAGGAT+AGG 0.481924 1.3:+71543708 None:intergenic
CAAAACAAGGAAATCAAATT+GGG 0.482146 1.3:-71540293 MS.gene33547:CDS
TCCTAAATGGAAAACCCAAT+TGG 0.486397 1.3:+71541573 None:intergenic
AAGTTATTGGACTGTTGTAA+AGG 0.495057 1.3:-71540400 MS.gene33547:CDS
ATTGTATTATGGCACACAAT+GGG 0.500762 1.3:-71539930 MS.gene33547:CDS
GCAAAAGTGGATGCACAATT+GGG 0.501386 1.3:+71540253 None:intergenic
TCTAAGATGAAGCCACCGTT+TGG 0.502594 1.3:-71543387 MS.gene33547:CDS
TTCCTCTCAAAGAAATTGGT+TGG 0.505842 1.3:+71539837 None:intergenic
AGTGGATGCACAATTGGGCC+TGG 0.506196 1.3:+71540258 None:intergenic
CCTTTAAGCTTTGGACCAAA+CGG 0.506349 1.3:+71543372 None:intergenic
TACACAACCTACTTTGATTG+TGG 0.507919 1.3:-71541412 MS.gene33547:CDS
CTATGACTACGTTATAGATT+GGG 0.508181 1.3:-71541046 MS.gene33547:CDS
ATTTGTCTTGACAAAGGTGT+TGG 0.508980 1.3:+71540464 None:intergenic
TTTGTATGCAAGACCATTGG+AGG 0.509999 1.3:-71543511 MS.gene33547:CDS
GAATTGAATGTGTAGGGATA+GGG 0.511193 1.3:-71539970 MS.gene33547:intron
TGTAATACCATTCTTCACTT+GGG 0.512744 1.3:+71541431 None:intergenic
GGTATATTAGGGATTAAGGC+AGG 0.513268 1.3:-71540612 MS.gene33547:CDS
GACCAACCAATTTCTTTGAG+AGG 0.513325 1.3:-71539839 MS.gene33547:CDS
ACCAAGACCCAAGTGAAGAA+TGG 0.525685 1.3:-71541438 MS.gene33547:CDS
TGGTTTGTTCACCAAAGGTA+AGG 0.529144 1.3:+71543703 None:intergenic
ACAAACCTCTCATTCAATCA+TGG 0.531898 1.3:-71543881 MS.gene33547:CDS
ACAAAGGCTTGACGAGGTGG+TGG 0.532967 1.3:+71543825 None:intergenic
ATTACCTGACGGAGTGACCT+TGG 0.533638 1.3:+71543310 None:intergenic
TTGGAACCTTACTATGACAA+AGG 0.533882 1.3:+71543809 None:intergenic
TGTAAGCTTAATAGTGAGAT+CGG 0.543713 1.3:-71541085 MS.gene33547:CDS
CATTCACTAATTATAATGTG+TGG 0.543852 1.3:-71540200 MS.gene33547:CDS
CGGACAAGGTTGATTTCTGA+AGG 0.546012 1.3:+71543978 None:intergenic
TACGGTAGGTTGGTTTGGAG+AGG 0.547168 1.3:-71543589 MS.gene33547:CDS
ATTGGAGGGTGTGGCAGCTG+TGG 0.548777 1.3:-71543496 MS.gene33547:CDS
GTGAGATCGGTTTCAACTGT+GGG 0.550438 1.3:-71541072 MS.gene33547:CDS
CCAAGTTTGATGCTACCACT+TGG 0.551888 1.3:+71541015 None:intergenic
TCTAGGAAGACAGCATTGGC+AGG 0.552138 1.3:+71541337 None:intergenic
TTAAACGGTTCATAGGTGAA+TGG 0.552700 1.3:+71543666 None:intergenic
TAAGAGCATGATGAGGAGAA+AGG 0.552830 1.3:+71544052 None:intergenic
CAAGTGGTAGCATCAAACTT+GGG 0.552885 1.3:-71541014 MS.gene33547:CDS
GATAGCCATGATTGAATGAG+AGG 0.554086 1.3:+71543876 None:intergenic
TGCAAGACCATTGGAGGGTG+TGG 0.554369 1.3:-71543505 MS.gene33547:CDS
CCAGTCATGCCTACGTTGAG+TGG 0.556192 1.3:-71539876 MS.gene33547:CDS
TAATGTTGAAAAGTGCAGTT+GGG 0.556487 1.3:+71539774 None:intergenic
AAAAGTCTACGATGATTTCG+AGG 0.556844 1.3:+71543778 None:intergenic
TGAGGATTATGGTGCGGACA+AGG 0.557736 1.3:+71543964 None:intergenic
CTCCAAATTTGTCTTGACAA+AGG 0.561847 1.3:+71540458 None:intergenic
CTAATGTTGAAAAGTGCAGT+TGG 0.562794 1.3:+71539773 None:intergenic
GTGCAGTTGGGCCAATGCAT+AGG 0.562944 1.3:+71539786 None:intergenic
GTTCACCAAAGGTAAGGATA+GGG 0.566348 1.3:+71543709 None:intergenic
TGCAGTGGTTTGTTCACCAA+AGG 0.567507 1.3:+71543698 None:intergenic
TAATTTGTATGCAAGACCAT+TGG 0.568732 1.3:-71543514 MS.gene33547:CDS
TTGCTAGCTGATAACACCAT+TGG 0.576690 1.3:-71540543 MS.gene33547:CDS
TGATTTCTGAAGGTGTTAGA+GGG 0.580744 1.3:+71543988 None:intergenic
AACAAAACTGAGAAATGGGC+AGG 0.581483 1.3:-71540165 MS.gene33547:CDS
ACTGGATAATCTTCCTGAGA+AGG 0.584969 1.3:+71539894 None:intergenic
TAAGCCTTCTGAGTTACTAG+TGG 0.586124 1.3:-71540334 MS.gene33547:CDS
ACAGCTGCCACACCCTCCAA+TGG 0.586261 1.3:+71543498 None:intergenic
CAAATCAAAGAAGACATACA+TGG 0.588282 1.3:-71540570 MS.gene33547:CDS
GTCATGCCTACGTTGAGTGG+TGG 0.588484 1.3:-71539873 MS.gene33547:CDS
TGTGGCAGATAACTGAGGTC+AGG 0.588686 1.3:-71541113 MS.gene33547:intron
ATTCCAGTGCCAAAAGCTGA+AGG 0.590477 1.3:-71543426 MS.gene33547:CDS
GGACCTGGTTTCACCATCCA+AGG 0.591002 1.3:-71543327 MS.gene33547:CDS
TATTGTATTATGGCACACAA+TGG 0.591427 1.3:-71539931 MS.gene33547:CDS
ATATTCACCACAATCAAAGT+AGG 0.591448 1.3:+71541405 None:intergenic
AAGCAGAATAGTATGCGTCT+AGG 0.592646 1.3:+71541320 None:intergenic
TTAGGATTCGACATTCAAGT+TGG 0.594138 1.3:-71541556 MS.gene33547:CDS
AATTGCAATCCCAAATGAAG+TGG 0.594960 1.3:-71541215 MS.gene33547:intron
AATCACCAAAGCCTATGCAT+TGG 0.596584 1.3:-71539797 MS.gene33547:CDS
ATTCACTAATTATAATGTGT+GGG 0.598904 1.3:-71540199 MS.gene33547:CDS
AATAGGTAAAGAAATGGTCA+TGG 0.601680 1.3:+71540514 None:intergenic
TGCGTCTAGGAAGACAGCAT+TGG 0.603158 1.3:+71541333 None:intergenic
TGAAAGATCAAACAATACCT+AGG 0.603738 1.3:-71540425 MS.gene33547:CDS
CGTAATGAAAAGTGAGATTG+TGG 0.609986 1.3:+71543922 None:intergenic
AAAGTCTACGATGATTTCGA+GGG 0.611099 1.3:+71543779 None:intergenic
CAATTGGGCCTGGAAGCAAA+CGG 0.613823 1.3:+71540268 None:intergenic
GATTGGGAGTTTAAGCCAAG+TGG 0.613885 1.3:-71541030 MS.gene33547:CDS
ATCTCAACAAAACTCTACAA+AGG 0.617196 1.3:-71543741 MS.gene33547:CDS
TGACCTTGGATGGTGAAACC+AGG 0.621250 1.3:+71543324 None:intergenic
TTGGCAGGACAATCTGTGAA+AGG 0.622053 1.3:+71541352 None:intergenic
GCATACTATTCTGCTTCAGA+TGG 0.624085 1.3:-71541313 MS.gene33547:CDS
CCTGACGGAGTGACCTTGGA+TGG 0.627284 1.3:+71543314 None:intergenic
TGGCTTCACCATCAATGTCA+AGG 0.628699 1.3:+71540484 None:intergenic
TTGTATGCAAGACCATTGGA+GGG 0.628719 1.3:-71543510 MS.gene33547:CDS
GAAGGTGTTAGAGGGTCAAG+TGG 0.633794 1.3:+71543996 None:intergenic
GCTGATGCAAGAGTCAACAT+TGG 0.634134 1.3:-71540360 MS.gene33547:CDS
TTAAGCTTTGGACCAAACGG+TGG 0.635575 1.3:+71543375 None:intergenic
ATGACAAAGGCTTGACGAGG+TGG 0.637143 1.3:+71543822 None:intergenic
TTTACCACTAGTAACTCAGA+AGG 0.641809 1.3:+71540330 None:intergenic
GTATATTAGGGATTAAGGCA+GGG 0.645710 1.3:-71540611 MS.gene33547:CDS
AAGTGGTAGCATCAAACTTG+GGG 0.646028 1.3:-71541013 MS.gene33547:intron
ATGGTCATGGTAGACACCAA+TGG 0.648331 1.3:+71540527 None:intergenic
AGTGAGATCGGTTTCAACTG+TGG 0.648718 1.3:-71541073 MS.gene33547:CDS
GTAAGTCAACATGATGGACC+TGG 0.649655 1.3:-71543342 MS.gene33547:CDS
TACCGTGAAGTACTATACAA+AGG 0.653255 1.3:-71541487 MS.gene33547:CDS
AAAACTGAGAAATGGGCAGG+AGG 0.656721 1.3:-71540162 MS.gene33547:CDS
ACAAAACTCTACAAAGGACA+AGG 0.665601 1.3:-71543735 MS.gene33547:CDS
TTATATGTTGATCATAGCAG+AGG 0.670339 1.3:-71540138 MS.gene33547:CDS
AAGGTGTTAGAGGGTCAAGT+GGG 0.671650 1.3:+71543997 None:intergenic
ATATCTGTAAGTCAACATGA+TGG 0.685391 1.3:-71543348 MS.gene33547:CDS
GAATGGTAACTGTGATGCAG+TGG 0.687597 1.3:+71543683 None:intergenic
AGTTACATAAGAGCATGATG+AGG 0.688695 1.3:+71544045 None:intergenic
ACTATGACAAAGGCTTGACG+AGG 0.716443 1.3:+71543819 None:intergenic
TCAAATCCACCACTCAACGT+AGG 0.724526 1.3:+71539867 None:intergenic
ATGATTTGAGGATTATGGTG+CGG 0.736939 1.3:+71543958 None:intergenic
AGTATGCTGGTGATATCATG+TGG 0.737902 1.3:-71541249 MS.gene33547:CDS
TTGTGTGTGGCAGATAACTG+AGG 0.795071 1.3:-71541118 MS.gene33547:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATTAAGAATTGAAA+AGG + chr1.3:71541828-71541847 None:intergenic 10.0%
!! ATTCAAATTATAAAATGATA+TGG + chr1.3:71541738-71541757 None:intergenic 10.0%
!! TATTCTTAGATATATTATAA+AGG - chr1.3:71541059-71541078 MS.gene33547:CDS 10.0%
!!! AGTCTTTATAATTTTTTTTT+TGG - chr1.3:71540977-71540996 MS.gene33547:intron 10.0%
!!! TAATTGCTATATTTTAAAAT+AGG - chr1.3:71543201-71543220 MS.gene33547:intron 10.0%
!! GGTAAAATATCATTTATAAT+AGG + chr1.3:71541652-71541671 None:intergenic 15.0%
!! TAATGCATAATATTAGTATA+AGG + chr1.3:71540863-71540882 None:intergenic 15.0%
!!! GTTTTTAAATTCAATATTAC+TGG + chr1.3:71541868-71541887 None:intergenic 15.0%
!!! TTACTTGTTATAATTTTGTT+GGG - chr1.3:71543144-71543163 MS.gene33547:intron 15.0%
!! AAGGAAAAAAAAATAAGTCA+GGG + chr1.3:71541264-71541283 None:intergenic 20.0%
!! AAGGATCAAATTGAATATTT+AGG - chr1.3:71540756-71540775 MS.gene33547:intron 20.0%
!! ATATATAAATTAGCGACTAA+TGG - chr1.3:71540621-71540640 MS.gene33547:CDS 20.0%
!! ATTCACTAATTATAATGTGT+GGG - chr1.3:71543648-71543667 MS.gene33547:CDS 20.0%
!! ATTGATGCTAAAGAAATTAT+TGG + chr1.3:71542318-71542337 None:intergenic 20.0%
!! CCTAATAAAAAAACAAAACA+AGG - chr1.3:71543541-71543560 MS.gene33547:CDS 20.0%
!! TAAAAAACTACAATGATTGA+TGG - chr1.3:71542144-71542163 MS.gene33547:intron 20.0%
!! TAGAAAAACACATTGTTAAT+GGG + chr1.3:71541794-71541813 None:intergenic 20.0%
!! TAGAGAAACACATTATTAAT+GGG + chr1.3:71542058-71542077 None:intergenic 20.0%
!! TCTGGAAAAAAAAAATTTGA+AGG + chr1.3:71541283-71541302 None:intergenic 20.0%
!! TTAGAAAAACACATTGTTAA+TGG + chr1.3:71541795-71541814 None:intergenic 20.0%
!! TTAGAGAAACACATTATTAA+TGG + chr1.3:71542059-71542078 None:intergenic 20.0%
!! TTCATTCATATTAGATATGT+TGG + chr1.3:71542193-71542212 None:intergenic 20.0%
!!! AATGTTGTCTAATTTTTTTG+TGG - chr1.3:71540815-71540834 MS.gene33547:intron 20.0%
!!! AATTTTTCGGAGAAAAAATT+CGG + chr1.3:71541312-71541331 None:intergenic 20.0%
!!! CCTTGTTTTGTTTTTTTATT+AGG + chr1.3:71543544-71543563 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG + chr1.3:71541325-71541344 None:intergenic 20.0%
!!! CTTCAAACTATGTTTTTTTA+AGG + chr1.3:71540948-71540967 None:intergenic 20.0%
!!! GCTATATTTTAAAATAGGTT+GGG - chr1.3:71543206-71543225 MS.gene33547:intron 20.0%
!!! GTTACTTGTTATAATTTTGT+TGG - chr1.3:71543143-71543162 MS.gene33547:intron 20.0%
!!! TGCTATATTTTAAAATAGGT+TGG - chr1.3:71543205-71543224 MS.gene33547:intron 20.0%
!!! TTTGTTTCTTTAATCAAACT+TGG - chr1.3:71542916-71542935 MS.gene33547:intron 20.0%
!!! TTTTAAAACTGTTATACTGT+TGG - chr1.3:71541027-71541046 MS.gene33547:CDS 20.0%
! AAAAACTACAATGATTCTGA+TGG - chr1.3:71541882-71541901 MS.gene33547:intron 25.0%
! AAACAAATGATCCAAATTTC+AGG + chr1.3:71542903-71542922 None:intergenic 25.0%
! ACAAAACAAGGAAATCAAAT+TGG - chr1.3:71543553-71543572 MS.gene33547:CDS 25.0%
! AGAACAAGGATATTGTATTA+TGG - chr1.3:71543906-71543925 MS.gene33547:CDS 25.0%
! AGGAAAAAAAAATAAGTCAG+GGG + chr1.3:71541263-71541282 None:intergenic 25.0%
! ATACAACAAAACTGAGAAAT+GGG - chr1.3:71543678-71543697 MS.gene33547:CDS 25.0%
! ATATGTTTAGTTAGAATGCA+AGG + chr1.3:71541985-71542004 None:intergenic 25.0%
! ATGAATTGAATTGAATGTGT+AGG - chr1.3:71543870-71543889 MS.gene33547:CDS 25.0%
! CAAAACAAGGAAATCAAATT+GGG - chr1.3:71543554-71543573 MS.gene33547:CDS 25.0%
! CAAAATTGTTAGGATGAAAT+TGG + chr1.3:71540588-71540607 None:intergenic 25.0%
! CAAGATAATAGGTAAAGAAA+TGG + chr1.3:71543342-71543361 None:intergenic 25.0%
! CATAATATTAGTATAAGGTC+TGG + chr1.3:71540858-71540877 None:intergenic 25.0%
! CATTCACTAATTATAATGTG+TGG - chr1.3:71543647-71543666 MS.gene33547:CDS 25.0%
! GAAGGAAAAAAAAATAAGTC+AGG + chr1.3:71541265-71541284 None:intergenic 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG - chr1.3:71541449-71541468 MS.gene33547:CDS 25.0%
! TATATATGGCATAACACATT+TGG + chr1.3:71542874-71542893 None:intergenic 25.0%
! TGAATTGAATTGAATGTGTA+GGG - chr1.3:71543871-71543890 MS.gene33547:CDS 25.0%
! TGTTAATTAAGAGTTTGAAG+AGG + chr1.3:71542092-71542111 None:intergenic 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr1.3:71541549-71541568 MS.gene33547:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr1.3:71541568-71541549 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG - chr1.3:71541448-71541467 MS.gene33547:CDS 25.0%
! TTCTTCAACGAATGTTTAAA+CGG + chr1.3:71540199-71540218 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr1.3:71541548-71541567 MS.gene33547:CDS 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr1.3:71541567-71541548 None:intergenic 25.0%
!! AAACACATTATTAATGGGTA+TGG + chr1.3:71542053-71542072 None:intergenic 25.0%
!! AAAGCATTAGATATCTTAAC+AGG + chr1.3:71542564-71542583 None:intergenic 25.0%
!! ACAATTTTCTTTGATCAGTT+GGG - chr1.3:71542251-71542270 MS.gene33547:intron 25.0%
!! GTGAGAAATTGTTAATGTTT+TGG - chr1.3:71543843-71543862 MS.gene33547:CDS 25.0%
!!! ATTTTTCGGAGAAAAAATTC+GGG + chr1.3:71541311-71541330 None:intergenic 25.0%
!!! TATCTTATTTTTGTGCTAAG+CGG + chr1.3:71541673-71541692 None:intergenic 25.0%
!!! TCTAATTTTTTTGTGGTGAT+CGG - chr1.3:71540822-71540841 MS.gene33547:intron 25.0%
!!! TTCTTTGATTTGATCTGTAT+TGG + chr1.3:71543269-71543288 None:intergenic 25.0%
!!! TTTTTAAGGAACTTCAAACT+AGG + chr1.3:71540934-71540953 None:intergenic 25.0%
AAAGAAATCACCACTTCATT+TGG + chr1.3:71542645-71542664 None:intergenic 30.0%
AAATACTACATGCGTAATAG+TGG - chr1.3:71541949-71541968 MS.gene33547:intron 30.0%
AAATGCTAGAGAACATGATA+TGG - chr1.3:71543061-71543080 MS.gene33547:intron 30.0%
AAGAAATCACCACTTCATTT+GGG + chr1.3:71542644-71542663 None:intergenic 30.0%
AAGGAAAAAAAATAAGCCAG+GGG - chr1.3:71541450-71541469 MS.gene33547:CDS 30.0%
AAGTTATTGGACTGTTGTAA+AGG - chr1.3:71543447-71543466 MS.gene33547:CDS 30.0%
AATACTACATGCGTAATAGT+GGG - chr1.3:71541950-71541969 MS.gene33547:intron 30.0%
AATAGGTAAAGAAATGGTCA+TGG + chr1.3:71543336-71543355 None:intergenic 30.0%
AATGTCAAGGTCAAGATAAT+AGG + chr1.3:71543353-71543372 None:intergenic 30.0%
ACTATCACATTTCCGTTTAA+CGG + chr1.3:71543088-71543107 None:intergenic 30.0%
ACTATGACTACGTTATAGAT+TGG - chr1.3:71542800-71542819 MS.gene33547:intron 30.0%
ACTTCAAACTAGGTTAAATG+CGG + chr1.3:71540924-71540943 None:intergenic 30.0%
ATATAGTCATGCCTGAAATT+TGG - chr1.3:71542889-71542908 MS.gene33547:intron 30.0%
ATATCTGTAAGTCAACATGA+TGG - chr1.3:71540499-71540518 MS.gene33547:CDS 30.0%
ATATTCACCACAATCAAAGT+AGG + chr1.3:71542445-71542464 None:intergenic 30.0%
ATCCTTTGTATAGTACTTCA+CGG + chr1.3:71542365-71542384 None:intergenic 30.0%
ATCTCAACAAAACTCTACAA+AGG - chr1.3:71540106-71540125 MS.gene33547:intron 30.0%
ATTGTATTATGGCACACAAT+GGG - chr1.3:71543917-71543936 MS.gene33547:CDS 30.0%
ATTTCAGGCATGACTATATA+TGG + chr1.3:71542888-71542907 None:intergenic 30.0%
CAAATCAAAGAAGACATACA+TGG - chr1.3:71543277-71543296 MS.gene33547:intron 30.0%
CAATACCTAGGAAAAGTTAT+TGG - chr1.3:71543434-71543453 MS.gene33547:CDS 30.0%
CAATTTACCAAAAATGGCAT+GGG - chr1.3:71541223-71541242 MS.gene33547:CDS 30.0%
CATACAACAAAACTGAGAAA+TGG - chr1.3:71543677-71543696 MS.gene33547:CDS 30.0%
CATCAGCAATTTACCAAAAA+TGG - chr1.3:71541217-71541236 MS.gene33547:CDS 30.0%
CTATGACTACGTTATAGATT+GGG - chr1.3:71542801-71542820 MS.gene33547:intron 30.0%
CTTGATGAAATGAGAATTGT+TGG - chr1.3:71540379-71540398 MS.gene33547:CDS 30.0%
GAAAAAATTCGGGAAAAATC+TGG + chr1.3:71541301-71541320 None:intergenic 30.0%
GATGATTATCCACAAATTAG+AGG - chr1.3:71543622-71543641 MS.gene33547:CDS 30.0%
GTTAGAATGCAAGGAAAAAA+TGG + chr1.3:71541976-71541995 None:intergenic 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr1.3:71541550-71541569 MS.gene33547:CDS 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr1.3:71541569-71541550 None:intergenic 30.0%
TAATCATCAGTTAGCAAAAG+TGG + chr1.3:71543610-71543629 None:intergenic 30.0%
TACTGGTATATTAGGGATTA+AGG - chr1.3:71543231-71543250 MS.gene33547:intron 30.0%
TACTTTGATTGTGGTGAATA+TGG - chr1.3:71542444-71542463 MS.gene33547:intron 30.0%
TATTGTATTATGGCACACAA+TGG - chr1.3:71543916-71543935 MS.gene33547:CDS 30.0%
TGAAAGATCAAACAATACCT+AGG - chr1.3:71543422-71543441 MS.gene33547:CDS 30.0%
TGTAAGCTTAATAGTGAGAT+CGG - chr1.3:71542762-71542781 MS.gene33547:intron 30.0%
TGTAATACCATTCTTCACTT+GGG + chr1.3:71542419-71542438 None:intergenic 30.0%
TGTGATGCAACAAAATTGTT+AGG + chr1.3:71540598-71540617 None:intergenic 30.0%
TTATATGTTGATCATAGCAG+AGG - chr1.3:71543709-71543728 MS.gene33547:CDS 30.0%
TTCTCTAGCATTTAAACGTA+AGG + chr1.3:71543054-71543073 None:intergenic 30.0%
TTGGTATGATTTGAGGATTA+TGG + chr1.3:71539897-71539916 None:intergenic 30.0%
TTTACAAGACTATTACCTGA+CGG + chr1.3:71540551-71540570 None:intergenic 30.0%
! GACAATTTTCTTTGATCAGT+TGG - chr1.3:71542250-71542269 MS.gene33547:intron 30.0%
! GATCCTTCAAAATTTTCTTG+CGG + chr1.3:71540743-71540762 None:intergenic 30.0%
! GTATTTTCAAATATCAGCTG+TGG + chr1.3:71541935-71541954 None:intergenic 30.0%
! GTGAAGTGTTATTACAAGAA+TGG - chr1.3:71540304-71540323 MS.gene33547:CDS 30.0%
! TAATGTTGAAAAGTGCAGTT+GGG + chr1.3:71544076-71544095 None:intergenic 30.0%
! TAATTTGTATGCAAGACCAT+TGG - chr1.3:71540333-71540352 MS.gene33547:CDS 30.0%
! TTATGACTATTGATTGTGTG+TGG - chr1.3:71542716-71542735 MS.gene33547:intron 30.0%
!! AATCTCACTTTTCATTACGT+TGG - chr1.3:71539929-71539948 MS.gene33547:CDS 30.0%
!! TTTTTGGTAAATTGCTGATG+TGG + chr1.3:71541217-71541236 None:intergenic 30.0%
!!! CATTTCTCAGTTTTGTTGTA+TGG + chr1.3:71543679-71543698 None:intergenic 30.0%
!!! CTAATTTTTTTGTGGTGATC+GGG - chr1.3:71540823-71540842 MS.gene33547:intron 30.0%
!!! GGTGATTTTGTTTTAAGAAC+AGG + chr1.3:71544037-71544056 None:intergenic 30.0%
!!! GTAGAGTTTTGTTGAGATTA+TGG + chr1.3:71540104-71540123 None:intergenic 30.0%
!!! TAATTTTTTTGTGGTGATCG+GGG - chr1.3:71540824-71540843 MS.gene33547:intron 30.0%
!!! TGTTTTATGTGCTGCTTTTA+CGG - chr1.3:71540240-71540259 MS.gene33547:CDS 30.0%
AAAACTTGCAAGACATGCAT+AGG + chr1.3:71541712-71541731 None:intergenic 35.0%
AAAAGTCTACGATGATTTCG+AGG + chr1.3:71540072-71540091 None:intergenic 35.0%
AAAAGTGAGATTGTGGTGTT+TGG + chr1.3:71539921-71539940 None:intergenic 35.0%
AAAGTCTACGATGATTTCGA+GGG + chr1.3:71540071-71540090 None:intergenic 35.0%
AATTGCAATCCCAAATGAAG+TGG - chr1.3:71542632-71542651 MS.gene33547:intron 35.0%
ACAAAACTCTACAAAGGACA+AGG - chr1.3:71540112-71540131 MS.gene33547:CDS 35.0%
ACAAACCTCTCATTCAATCA+TGG - chr1.3:71539966-71539985 MS.gene33547:intron 35.0%
ACAGATATGCCTTTAAGCTT+TGG + chr1.3:71540487-71540506 None:intergenic 35.0%
ACATGATATGGTCCGTTAAA+CGG - chr1.3:71543073-71543092 MS.gene33547:intron 35.0%
AGGAATATGACTGCATTCTA+TGG + chr1.3:71539828-71539847 None:intergenic 35.0%
AGGATTCCTCTCAAAGAAAT+TGG + chr1.3:71544017-71544036 None:intergenic 35.0%
ATGATTTGAGGATTATGGTG+CGG + chr1.3:71539892-71539911 None:intergenic 35.0%
ATTTCATCATGTTCCTTCTC+AGG - chr1.3:71543940-71543959 MS.gene33547:CDS 35.0%
CAATTTACCAAAAACGGCAT+GGG + chr1.3:71541490-71541509 None:intergenic 35.0%
CACCTTTGTCAAGACAAATT+TGG - chr1.3:71543387-71543406 MS.gene33547:CDS 35.0%
CGAATGTTTAAACGGTTCAT+AGG + chr1.3:71540191-71540210 None:intergenic 35.0%
CGTAATGAAAAGTGAGATTG+TGG + chr1.3:71539928-71539947 None:intergenic 35.0%
CGTCAGCAATTTACCAAAAA+CGG + chr1.3:71541496-71541515 None:intergenic 35.0%
CTCCAAATTTGTCTTGACAA+AGG + chr1.3:71543392-71543411 None:intergenic 35.0%
CTTGAATGTCGAATCCTAAA+TGG + chr1.3:71542290-71542309 None:intergenic 35.0%
GAATTGAATGTGTAGGGATA+GGG - chr1.3:71543877-71543896 MS.gene33547:CDS 35.0%
GCAATTTACCAAAAATGGCA+TGG - chr1.3:71541222-71541241 MS.gene33547:CDS 35.0%
GTATATTAGGGATTAAGGCA+GGG - chr1.3:71543236-71543255 MS.gene33547:intron 35.0%
GTGATGATACTTTAGCAGTT+TGG - chr1.3:71543731-71543750 MS.gene33547:CDS 35.0%
GTGTAATACCATTCTTCACT+TGG + chr1.3:71542420-71542439 None:intergenic 35.0%
TACACAACCTACTTTGATTG+TGG - chr1.3:71542435-71542454 MS.gene33547:intron 35.0%
TATCTTGACCTTGACATTGA+TGG - chr1.3:71543355-71543374 MS.gene33547:CDS 35.0%
TCCTAAATGGAAAACCCAAT+TGG + chr1.3:71542277-71542296 None:intergenic 35.0%
TGAATTGAATGTGTAGGGAT+AGG - chr1.3:71543876-71543895 MS.gene33547:CDS 35.0%
TGATTGAATGAGAGGTTTGT+CGG + chr1.3:71539966-71539985 None:intergenic 35.0%
TTAAACGGTTCATAGGTGAA+TGG + chr1.3:71540184-71540203 None:intergenic 35.0%
TTAGGATTCGACATTCAAGT+TGG - chr1.3:71542291-71542310 MS.gene33547:intron 35.0%
TTCCTCTCAAAGAAATTGGT+TGG + chr1.3:71544013-71544032 None:intergenic 35.0%
TTGGAACCTTACTATGACAA+AGG + chr1.3:71540041-71540060 None:intergenic 35.0%
TTGGGCTTACTGGTATATTA+GGG - chr1.3:71543224-71543243 MS.gene33547:intron 35.0%
TTTACCACTAGTAACTCAGA+AGG + chr1.3:71543520-71543539 None:intergenic 35.0%
TTTCAAATATCAGCTGTGGT+TGG + chr1.3:71541931-71541950 None:intergenic 35.0%
TTTGCAGGGGCAAAAAAAAA+AGG + chr1.3:71541150-71541169 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + chr1.3:71541135-71541154 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + chr1.3:71541134-71541153 None:intergenic 35.0%
! AAACACATTGTTAATGGGTC+AGG + chr1.3:71541789-71541808 None:intergenic 35.0%
! AACACATTGTTAATGGGTCA+GGG + chr1.3:71541788-71541807 None:intergenic 35.0%
! ACAGTCCAATAACTTTTCCT+AGG + chr1.3:71543442-71543461 None:intergenic 35.0%
! AGTTACATAAGAGCATGATG+AGG + chr1.3:71539805-71539824 None:intergenic 35.0%
! ATTTGTCTTGACAAAGGTGT+TGG + chr1.3:71543386-71543405 None:intergenic 35.0%
! CTAATGTTGAAAAGTGCAGT+TGG + chr1.3:71544077-71544096 None:intergenic 35.0%
! TACCGTGAAGTACTATACAA+AGG - chr1.3:71542360-71542379 MS.gene33547:intron 35.0%
! TGATTTCGAGGGATTGTTTT+TGG + chr1.3:71540060-71540079 None:intergenic 35.0%
! TTAAAATAGGTTGGGCTTAC+TGG - chr1.3:71543214-71543233 MS.gene33547:intron 35.0%
!! GTTTGGTTTGGTATGATTTG+AGG + chr1.3:71539904-71539923 None:intergenic 35.0%
!! TGATTTCTGAAGGTGTTAGA+GGG + chr1.3:71539862-71539881 None:intergenic 35.0%
!! TGCATTTTTGAGAAGTATGC+TGG - chr1.3:71542585-71542604 MS.gene33547:intron 35.0%
!! TTGATTTCTGAAGGTGTTAG+AGG + chr1.3:71539863-71539882 None:intergenic 35.0%
!! TTTTTGGTAAATTGCTGACG+TGG - chr1.3:71541496-71541515 MS.gene33547:CDS 35.0%
!!! AAGAGTTTTGGTTTTGGTGT+TGG + chr1.3:71539999-71540018 None:intergenic 35.0%
!!! TGGAAGAAGAGTTTTGGTTT+TGG + chr1.3:71540005-71540024 None:intergenic 35.0%
AACAAAACTGAGAAATGGGC+AGG - chr1.3:71543682-71543701 MS.gene33547:CDS 40.0%
AAGCAGAATAGTATGCGTCT+AGG + chr1.3:71542530-71542549 None:intergenic 40.0%
AAGTGGTAGCATCAAACTTG+GGG - chr1.3:71542834-71542853 MS.gene33547:intron 40.0%
AATCACCAAAGCCTATGCAT+TGG - chr1.3:71544050-71544069 MS.gene33547:CDS 40.0%
ACTGGATAATCTTCCTGAGA+AGG + chr1.3:71543956-71543975 None:intergenic 40.0%
AGCAAAAGTGGATGCACAAT+TGG + chr1.3:71543598-71543617 None:intergenic 40.0%
AGTATGCTGGTGATATCATG+TGG - chr1.3:71542598-71542617 MS.gene33547:intron 40.0%
CAAGTGGTAGCATCAAACTT+GGG - chr1.3:71542833-71542852 MS.gene33547:intron 40.0%
GACCAACCAATTTCTTTGAG+AGG - chr1.3:71544008-71544027 MS.gene33547:CDS 40.0%
GATAGCCATGATTGAATGAG+AGG + chr1.3:71539974-71539993 None:intergenic 40.0%
GATTGAATGAGAGGTTTGTC+GGG + chr1.3:71539965-71539984 None:intergenic 40.0%
GATTGTGGTGAATATGGCTT+TGG - chr1.3:71542450-71542469 MS.gene33547:intron 40.0%
GCAAAAGTGGATGCACAATT+GGG + chr1.3:71543597-71543616 None:intergenic 40.0%
GCAATTTACCAAAAACGGCA+TGG + chr1.3:71541491-71541510 None:intergenic 40.0%
GCATACTATTCTGCTTCAGA+TGG - chr1.3:71542534-71542553 MS.gene33547:intron 40.0%
GGTATATTAGGGATTAAGGC+AGG - chr1.3:71543235-71543254 MS.gene33547:intron 40.0%
GTCAAGCCTTTGTCATAGTA+AGG - chr1.3:71540032-71540051 MS.gene33547:intron 40.0%
GTGAATGCACCTCTAATTTG+TGG + chr1.3:71543634-71543653 None:intergenic 40.0%
GTTATTCGTCCCTGCAAATA+GGG - chr1.3:71541091-71541110 MS.gene33547:CDS 40.0%
GTTCACCAAAGGTAAGGATA+GGG + chr1.3:71540141-71540160 None:intergenic 40.0%
GTTGGGCTTACTGGTATATT+AGG - chr1.3:71543223-71543242 MS.gene33547:intron 40.0%
TAAGCCTTCTGAGTTACTAG+TGG - chr1.3:71543513-71543532 MS.gene33547:CDS 40.0%
TCCTTTGACCCAGTTAATCA+CGG + chr1.3:71541210-71541191 None:intergenic 40.0%
TGAGATTGTGGTGTTTGGTT+TGG + chr1.3:71539916-71539935 None:intergenic 40.0%
TGATGTGGCAGTGATTAACT+GGG + chr1.3:71541202-71541221 None:intergenic 40.0%
TGTTATTCGTCCCTGCAAAT+AGG - chr1.3:71541090-71541109 MS.gene33547:CDS 40.0%
TGTTCACCAAAGGTAAGGAT+AGG + chr1.3:71540142-71540161 None:intergenic 40.0%
TTATTCGTCCCTGCAAATAG+GGG - chr1.3:71541092-71541111 MS.gene33547:CDS 40.0%
TTGCTAGCTGATAACACCAT+TGG - chr1.3:71543304-71543323 MS.gene33547:intron 40.0%
TTGTATGCAAGACCATTGGA+GGG - chr1.3:71540337-71540356 MS.gene33547:CDS 40.0%
TTGTCCTCGTAAGCTTAACT+CGG + chr1.3:71540896-71540915 None:intergenic 40.0%
TTTGATCAGTTGGGCCAATT+GGG - chr1.3:71542260-71542279 MS.gene33547:intron 40.0%
TTTGTATGCAAGACCATTGG+AGG - chr1.3:71540336-71540355 MS.gene33547:CDS 40.0%
! CTTTAGCAGTTTGGAGTCTA+AGG - chr1.3:71543740-71543759 MS.gene33547:CDS 40.0%
! GAGCCGCAAGAAAATTTTGA+AGG - chr1.3:71540737-71540756 MS.gene33547:intron 40.0%
! GCCAATTGGGTTTTCCATTT+AGG - chr1.3:71542273-71542292 MS.gene33547:intron 40.0%
! TAAGAGCATGATGAGGAGAA+AGG + chr1.3:71539798-71539817 None:intergenic 40.0%
! TACTCAGTTCCTTCAGCTTT+TGG + chr1.3:71540433-71540452 None:intergenic 40.0%
!! CCTTTAAGCTTTGGACCAAA+CGG + chr1.3:71540478-71540497 None:intergenic 40.0%
!! TGGTTTGTTCACCAAAGGTA+AGG + chr1.3:71540147-71540166 None:intergenic 40.0%
!!! AGTTTTGGTTTTGGTGTTGG+AGG + chr1.3:71539996-71540015 None:intergenic 40.0%
!!! GTCAATTCCCATGCCATTTT+TGG + chr1.3:71541233-71541252 None:intergenic 40.0%
!!! TTATGTGCTGCTTTTACGGT+AGG - chr1.3:71540244-71540263 MS.gene33547:CDS 40.0%
AAAACTGAGAAATGGGCAGG+AGG - chr1.3:71543685-71543704 MS.gene33547:CDS 45.0%
ACCAAGACCCAAGTGAAGAA+TGG - chr1.3:71542409-71542428 MS.gene33547:intron 45.0%
ACCATTCTTCACTTGGGTCT+TGG + chr1.3:71542413-71542432 None:intergenic 45.0%
ACTATGACAAAGGCTTGACG+AGG + chr1.3:71540031-71540050 None:intergenic 45.0%
ACTCCACGTCAGTATCTTCA+TGG - chr1.3:71543116-71543135 MS.gene33547:intron 45.0%
ATGGTCATGGTAGACACCAA+TGG + chr1.3:71543323-71543342 None:intergenic 45.0%
ATTCCAGTGCCAAAAGCTGA+AGG - chr1.3:71540421-71540440 MS.gene33547:CDS 45.0%
CCAAGTGGTAGCATCAAACT+TGG - chr1.3:71542832-71542851 MS.gene33547:intron 45.0%
CCAAGTTTGATGCTACCACT+TGG + chr1.3:71542835-71542854 None:intergenic 45.0%
CCGTTTGGTCCAAAGCTTAA+AGG - chr1.3:71540475-71540494 MS.gene33547:CDS 45.0%
CTGATGTGGCAGTGATTAAC+TGG + chr1.3:71541203-71541222 None:intergenic 45.0%
CTTTGATCAGTTGGGCCAAT+TGG - chr1.3:71542259-71542278 MS.gene33547:intron 45.0%
GAATGGTAACTGTGATGCAG+TGG + chr1.3:71540167-71540186 None:intergenic 45.0%
GATTGGGAGTTTAAGCCAAG+TGG - chr1.3:71542817-71542836 MS.gene33547:intron 45.0%
GCAGTGATTAACTGGGTCAA+AGG + chr1.3:71541195-71541214 None:intergenic 45.0%
GCTGATGCAAGAGTCAACAT+TGG - chr1.3:71543487-71543506 MS.gene33547:CDS 45.0%
GGAATTGACGAAAATACCCC+TGG + chr1.3:71541263-71541244 None:intergenic 45.0%
GGATAGGGAGATTGAGAACA+AGG - chr1.3:71543892-71543911 MS.gene33547:CDS 45.0%
GTAGCATCAAACTTGGGGTA+TGG - chr1.3:71542839-71542858 MS.gene33547:intron 45.0%
GTGATTCGTCCCTGCAAATA+GGG + chr1.3:71541620-71541639 None:intergenic 45.0%
TCAAATCCACCACTCAACGT+AGG + chr1.3:71543983-71544002 None:intergenic 45.0%
TCTTCACTTGGGTCTTGGTA+TGG + chr1.3:71542408-71542427 None:intergenic 45.0%
TGATTCGTCCCTGCAAATAG+GGG + chr1.3:71541619-71541638 None:intergenic 45.0%
TGGCTTCACCATCAATGTCA+AGG + chr1.3:71543366-71543385 None:intergenic 45.0%
TGTCCATGAAGATACTGACG+TGG + chr1.3:71543122-71543141 None:intergenic 45.0%
TGTGATTCGTCCCTGCAAAT+AGG + chr1.3:71541621-71541640 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr1.3:71541608-71541627 MS.gene33547:intron 45.0%
TTAAGCGACCCCTATTTGCA+GGG + chr1.3:71541627-71541608 None:intergenic 45.0%
TTGGCAGGACAATCTGTGAA+AGG + chr1.3:71542498-71542517 None:intergenic 45.0%
TTGTGTGTGGCAGATAACTG+AGG - chr1.3:71542729-71542748 MS.gene33547:intron 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr1.3:71541607-71541626 MS.gene33547:intron 45.0%
TTTAAGCGACCCCTATTTGC+AGG + chr1.3:71541626-71541607 None:intergenic 45.0%
! AAGGTGTTAGAGGGTCAAGT+GGG + chr1.3:71539853-71539872 None:intergenic 45.0%
! AGTGAGATCGGTTTCAACTG+TGG - chr1.3:71542774-71542793 MS.gene33547:intron 45.0%
! CGGACAAGGTTGATTTCTGA+AGG + chr1.3:71539872-71539891 None:intergenic 45.0%
! GTGAGATCGGTTTCAACTGT+GGG - chr1.3:71542775-71542794 MS.gene33547:intron 45.0%
! TCTAAGATGAAGCCACCGTT+TGG - chr1.3:71540460-71540479 MS.gene33547:CDS 45.0%
!! GTAAGTCAACATGATGGACC+TGG - chr1.3:71540505-71540524 MS.gene33547:CDS 45.0%
!! TGCAGTGGTTTGTTCACCAA+AGG + chr1.3:71540152-71540171 None:intergenic 45.0%
!! TTAAGCTTTGGACCAAACGG+TGG + chr1.3:71540475-71540494 None:intergenic 45.0%
!!! AGGTGGTGGAAGAAGAGTTT+TGG + chr1.3:71540011-71540030 None:intergenic 45.0%
!!! GCTTTTACGGTAGGTTGGTT+TGG - chr1.3:71540253-71540272 MS.gene33547:CDS 45.0%
!!! GTCAATTCCCATGCCGTTTT+TGG - chr1.3:71541480-71541499 MS.gene33547:CDS 45.0%
!! TTAAAAATCATAAAAAATTT+CGG + chr1.3:71541371-71541390 None:intergenic 5.0%
!!! AAATTTTGAAATTTTTTTTA+AGG - chr1.3:71541431-71541450 MS.gene33547:CDS 5.0%
ATGACAAAGGCTTGACGAGG+TGG + chr1.3:71540028-71540047 None:intergenic 50.0%
ATTACCTGACGGAGTGACCT+TGG + chr1.3:71540540-71540559 None:intergenic 50.0%
CAATTGGGCCTGGAAGCAAA+CGG + chr1.3:71543582-71543601 None:intergenic 50.0%
GCCGTGATTAACTGGGTCAA+AGG - chr1.3:71541518-71541537 MS.gene33547:CDS 50.0%
GGCTACCCTATCCTTACCTT+TGG - chr1.3:71540133-71540152 MS.gene33547:CDS 50.0%
TCAGCCGAGTTAAGCTTACG+AGG - chr1.3:71540889-71540908 MS.gene33547:intron 50.0%
TGACCTTGGATGGTGAAACC+AGG + chr1.3:71540526-71540545 None:intergenic 50.0%
TGACGTGGCCGTGATTAACT+GGG - chr1.3:71541511-71541530 MS.gene33547:CDS 50.0%
TGAGGATTATGGTGCGGACA+AGG + chr1.3:71539886-71539905 None:intergenic 50.0%
TGCGTCTAGGAAGACAGCAT+TGG + chr1.3:71542517-71542536 None:intergenic 50.0%
TGTGGCAGATAACTGAGGTC+AGG - chr1.3:71542734-71542753 MS.gene33547:intron 50.0%
TTGGGCCAATGCATAGGCTT+TGG + chr1.3:71544058-71544077 None:intergenic 50.0%
! ATTGGGTACCGTTTGCTTCC+AGG - chr1.3:71543571-71543590 MS.gene33547:CDS 50.0%
! GTTCCTTCAGCTTTTGGCAC+TGG + chr1.3:71540427-71540446 None:intergenic 50.0%
!! GAAGGTGTTAGAGGGTCAAG+TGG + chr1.3:71539854-71539873 None:intergenic 50.0%
!! TACGGTAGGTTGGTTTGGAG+AGG - chr1.3:71540258-71540277 MS.gene33547:CDS 50.0%
!! TCTAGGAAGACAGCATTGGC+AGG + chr1.3:71542513-71542532 None:intergenic 50.0%
!!! GTGCTGCTTTTACGGTAGGT+TGG - chr1.3:71540248-71540267 MS.gene33547:CDS 50.0%
ACAAAGGCTTGACGAGGTGG+TGG + chr1.3:71540025-71540044 None:intergenic 55.0%
AGTGGATGCACAATTGGGCC+TGG + chr1.3:71543592-71543611 None:intergenic 55.0%
CCACTCAACGTAGGCATGAC+TGG + chr1.3:71543974-71543993 None:intergenic 55.0%
CCAGTCATGCCTACGTTGAG+TGG - chr1.3:71543971-71543990 MS.gene33547:CDS 55.0%
CTGACGTGGCCGTGATTAAC+TGG - chr1.3:71541510-71541529 MS.gene33547:CDS 55.0%
GGACCTGGTTTCACCATCCA+AGG - chr1.3:71540520-71540539 MS.gene33547:CDS 55.0%
GTCATGCCTACGTTGAGTGG+TGG - chr1.3:71543974-71543993 MS.gene33547:CDS 55.0%
GTGCAGTTGGGCCAATGCAT+AGG + chr1.3:71544064-71544083 None:intergenic 55.0%
GTTAGAGGGTCAAGTGGGTG+AGG + chr1.3:71539848-71539867 None:intergenic 55.0%
TGCAAGACCATTGGAGGGTG+TGG - chr1.3:71540342-71540361 MS.gene33547:CDS 55.0%
ACAGCTGCCACACCCTCCAA+TGG + chr1.3:71540352-71540371 None:intergenic 60.0%
CCATCCAAGGTCACTCCGTC+AGG - chr1.3:71540533-71540552 MS.gene33547:CDS 60.0%
CCTGACGGAGTGACCTTGGA+TGG + chr1.3:71540536-71540555 None:intergenic 60.0%
! ATTGGAGGGTGTGGCAGCTG+TGG - chr1.3:71540351-71540370 MS.gene33547:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 71539773 71544096 71539773 ID=MS.gene33547
chr1.3 mRNA 71539773 71544096 71539773 ID=MS.gene33547.t1;Parent=MS.gene33547
chr1.3 exon 71543315 71544096 71543315 ID=MS.gene33547.t1.exon1;Parent=MS.gene33547.t1
chr1.3 CDS 71543315 71544096 71543315 ID=cds.MS.gene33547.t1;Parent=MS.gene33547.t1
chr1.3 exon 71541216 71541600 71541216 ID=MS.gene33547.t1.exon2;Parent=MS.gene33547.t1
chr1.3 CDS 71541216 71541600 71541216 ID=cds.MS.gene33547.t1;Parent=MS.gene33547.t1
chr1.3 exon 71541014 71541127 71541014 ID=MS.gene33547.t1.exon3;Parent=MS.gene33547.t1
chr1.3 CDS 71541014 71541127 71541014 ID=cds.MS.gene33547.t1;Parent=MS.gene33547.t1
chr1.3 exon 71540108 71540646 71540108 ID=MS.gene33547.t1.exon4;Parent=MS.gene33547.t1
chr1.3 CDS 71540108 71540646 71540108 ID=cds.MS.gene33547.t1;Parent=MS.gene33547.t1
chr1.3 exon 71539773 71539977 71539773 ID=MS.gene33547.t1.exon5;Parent=MS.gene33547.t1
chr1.3 CDS 71539773 71539977 71539773 ID=cds.MS.gene33547.t1;Parent=MS.gene33547.t1
Gene Sequence

>MS.gene33547

ATGAAGATGAAGTTGATATTCTCCTTTCTCCTCATCATGCTCTTATGTAACTCCATAGAATGCAGTCATATTCCTCACCCACTTGACCCTCTAACACCTTCAGAAATCAACCTTGTCCGCACCATAATCCTCAAATCATACCAAACCAAACACCACAATCTCACTTTTCATTACGTTGGATTGCAAGAACCCGACAAACCTCTCATTCAATCATGGCTATCCTCCAACACCAAAACCAAAACTCTTCTTCCACCACCTCGTCAAGCCTTTGTCATAGTAAGGTTCCAAAAACAATCCCTCGAAATCATCGTAGACTTTTCAACTCGTTCCATAATCTCAACAAAACTCTACAAAGGACAAGGCTACCCTATCCTTACCTTTGGTGAACAAACCACTGCATCACAGTTACCATTCACCTATGAACCGTTTAAACATTCGTTGAAGAAAAGAAATATTAACATATGTAATGTTTTATGTGCTGCTTTTACGGTAGGTTGGTTTGGAGAGGAAAAGAGTAAAAGAACAGTGAAAGTGAAGTGTTATTACAAGAATGGTTCTGCTAATTTGTATGCAAGACCATTGGAGGGTGTGGCAGCTGTGGTTGATCTTGATGAAATGAGAATTGTTGGTTATTCTGATAGACATGTGATTCCAGTGCCAAAAGCTGAAGGAACTGAGTATCGAGCTTCTAAGATGAAGCCACCGTTTGGTCCAAAGCTTAAAGGCATATCTGTAAGTCAACATGATGGACCTGGTTTCACCATCCAAGGTCACTCCGTCAGGTAATAGTCTTGTAAAATTTAGACTAAAAGCCAATTTCATCCTAACAATTTTGTTGCATCACAGTAATATATAAATTAGCGACTAATGGCAAAAATTATTTCATATGTTAATTTTGATCGACTAATTTGTTTCTATATAAAAATATTAAGAGATTAACTTTAGTATTAATTTTATTAGAATTGAGCCGCAAGAAAATTTTGAAGGATCAAATTGAATATTTAGGAAAAAAAAAATAAATCTGTTTAACATTAGCACAAAAAATGTTGTCTAATTTTTTTGTGGTGATCGGGGTTTGAACTCCAGACCTTATACTAATATTATGCATTATCTCTATCAGCCGAGTTAAGCTTACGAGGACAAGATTACCGCATTTAACCTAGTTTGAAGTTCCTTAAAAAAACATAGTTTGAAGTTTTAAATAAGTCTTTATAATTTTTTTTTTGGTGTCAAATTAATCATTAGTCATTTACATTTTAAAACTGTTATACTGTTGGATCAACTATTATTCTTAGATATATTATAAAGGCTTAAATATGTTATTCGTCCCTGCAAATAGGGGTCGCTTAAAATTTCGTCCCTGCAATCGCTAATCCTTTTTTTTTTGCCCCTGCAAAGTTTAATCAGTTAAAAATTCGTCCTTTGACCCAGTTAATCACTGCCACATCAGCAATTTACCAAAAATGGCATGGGAATTGACGAAAATACCCCTGACTTATTTTTTTTTCCTTCAAATTTTTTTTTTCCAGATTTTTCCCGAATTTTTTCTCCGAAAAATTTCAGTTTTTTCAGTTTTAATTTTAACATTTTTTTGTCCGAAATTTTTTATGATTTTTAATTATTTTTTCAGATTTTTTTTAATTTAAAAAAAAATTTCAAAATTTTGAAATTTTTTTTAAGGAAAAAAAATAAGCCAGGGGTATTTTCGTCAATTCCCATGCCGTTTTTGGTAAATTGCTGACGTGGCCGTGATTAACTGGGTCAAAGGACGAATTTTTAACTGATTAAACTTTGCAGGGGCAAAAAAAAGAATTAGCGATTGCAGAGACGAAATTTTAAGCGACCCCTATTTGCAGGGACGAATCACATATTTAAGCCTATTATAAATGATATTTTACCGCTTAGCACAAAAATAAGATATAATTTAGTTAAAAAACCTATGCATGTCTTGCAAGTTTTATACCATATCATTTTATAATTTGAATAAAAACATTGAGTATTTTTGTCTTATACCCTGACCCATTAACAATGTGTTTTTCTAACGTGTTATTTCCTTTTCAATTCTTAATTAATATTTTTTGATCAATAATAGCCAGTAATATTGAATTTAAAAACTACAATGATTCTGATGGTTGAAAAGTCTTTCTATCAAATTCCAACCACAGCTGATATTTGAAAATACTACATGCGTAATAGTGGGCCATTTTTTCCTTGCATTCTAACTAAACATATCATCTGAAAAAAGAAAAAAAAACTATATATGCTTTGATTGTTATACCATACCCATTAATAATGTGTTTCTCTAACGTACGATTTCCTCTTCAAACTCTTAATTAACATGAGAGATATTTTTTTTTTATTAATATTGAATTAAAAAACTACAATGATTGATGGTTGAAAAGTCTTTCTATCAAATTCCAACATATCTAATATGAATGAAGAAAAGTTACGATCTAGATAAAAAGAAAATTGACAGTGACAATTTTCTTTGATCAGTTGGGCCAATTGGGTTTTCCATTTAGGATTCGACATTCAAGTTGGTCCAATAATTTCTTTAGCATCAATTTATGATCTAGAAAATCAGAAATACCGTGAAGTACTATACAAAGGATTCATATCAGAAGTGTTTGTACCATACCAAGACCCAAGTGAAGAATGGTATTACACAACCTACTTTGATTGTGGTGAATATGGCTTTGGACAGACTATGTCTTCATTACAACCTTTCACAGATTGTCCTGCCAATGCTGTCTTCCTAGACGCATACTATTCTGCTTCAGATGGTACTCCTGTTAAGATATCTAATGCTTTTTGCATTTTTGAGAAGTATGCTGGTGATATCATGTGGCGTCACACAGAAATTGCAATCCCAAATGAAGTGGTGATTTCTTTGTTTTTTTTTTACTTTTTTTCAACTTAGTTTGAATTATTGTTTCATTTTTTTTATGACTATTGATTGTGTGTGGCAGATAACTGAGGTCAGGTCAGATGTAAGCTTAATAGTGAGATCGGTTTCAACTGTGGGAAACTATGACTACGTTATAGATTGGGAGTTTAAGCCAAGTGGTAGCATCAAACTTGGGGTATGGATTTATATACCAAATGTGTTATGCCATATATAGTCATGCCTGAAATTTGGATCATTTGTTTCTTTAATCAAACTTGGATTGCATAGTTATTTTGTTCATCAAATTGTAACATATGTCAAATTCATCTCTTACTTTTAAAAATAATTTTTATGTTGTTGAGCTTGTAACATGTCAATCAAAATGTTTCTACCTTACGTTTAAATGCTAGAGAACATGATATGGTCCGTTAAACGGAAATGTGATAGTTCAAATAGACTCCACGTCAGTATCTTCATGGACAAGTTACTTGTTATAATTTTGTTGGGTAAAGAAAAATATTAACTACTTGTTATATGAAGCTAATTGCTATATTTTAAAATAGGTTGGGCTTACTGGTATATTAGGGATTAAGGCAGGGACATATACCAATACAGATCAAATCAAAGAAGACATACATGGCACATTGCTAGCTGATAACACCATTGGTGTCTACCATGACCATTTCTTTACCTATTATCTTGACCTTGACATTGATGGTGAAGCCAACACCTTTGTCAAGACAAATTTGGAGACTGTAAGAGTGAAAGATCAAACAATACCTAGGAAAAGTTATTGGACTGTTGTAAAGGAAACAGCTAAAACAGAAGCTGATGCAAGAGTCAACATTGGTTTTAAGCCTTCTGAGTTACTAGTGGTAAATCCTAATAAAAAAACAAAACAAGGAAATCAAATTGGGTACCGTTTGCTTCCAGGCCCAATTGTGCATCCACTTTTGCTAACTGATGATTATCCACAAATTAGAGGTGCATTCACTAATTATAATGTGTGGGTCACACCATACAACAAAACTGAGAAATGGGCAGGAGGATTATATGTTGATCATAGCAGAGGTGATGATACTTTAGCAGTTTGGAGTCTAAGGTGAGTCCATTAAATTTTGGCTTTGCTCATTCTCATTTACGTACTCTTTGTAAGTTGTAATATTGTGCATAAAAAACAAGTGTGAGAAATTGTTAATGTTTTGGTATCATGAATTGAATTGAATGTGTAGGGATAGGGAGATTGAGAACAAGGATATTGTATTATGGCACACAATGGGATTTCATCATGTTCCTTCTCAGGAAGATTATCCAGTCATGCCTACGTTGAGTGGTGGATTTGAGCTTAGACCAACCAATTTCTTTGAGAGGAATCCTGTTCTTAAAACAAAATCACCAAAGCCTATGCATTGGCCCAACTGCACTTTTCAACATTAG
Protein sequence

>MS.gene33547.t1

MKMKLIFSFLLIMLLCNSIECSHIPHPLDPLTPSEINLVRTIILKSYQTKHHNLTFHYVGLQEPDKPLIQSWLSSNTKTKTLLPPPRQAFVIVRFQKQSLEIIVDFSTRSIISTKLYKGQGYPILTFGEQTTASQLPFTYEPFKHSLKKRNINICNVLCAAFTVGWFGEEKSKRTVKVKCYYKNGSANLYARPLEGVAAVVDLDEMRIVGYSDRHVIPVPKAEGTEYRASKMKPPFGPKLKGISVSQHDGPGFTIQGHSVSWANWVFHLGFDIQVGPIISLASIYDLENQKYREVLYKGFISEVFVPYQDPSEEWYYTTYFDCGEYGFGQTMSSLQPFTDCPANAVFLDAYYSASDGTPVKISNAFCIFEKYAGDIMWRHTEIAIPNEVITEVRSDVSLIVRSVSTVGNYDYVIDWEFKPSGSIKLGVGLTGILGIKAGTYTNTDQIKEDIHGTLLADNTIGVYHDHFFTYYLDLDIDGEANTFVKTNLETVRVKDQTIPRKSYWTVVKETAKTEADARVNIGFKPSELLVVNPNKKTKQGNQIGYRLLPGPIVHPLLLTDDYPQIRGAFTNYNVWVTPYNKTEKWAGGLYVDHSRGDDTLAVWSLRDREIENKDIVLWHTMGFHHVPSQEDYPVMPTLSGGFELRPTNFFERNPVLKTKSPKPMHWPNCTFQH