Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26906.t1 | XP_003592404.1 | 96 | 673 | 27 | 0 | 1 | 673 | 3 | 675 | 0.00E+00 | 1362.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26906.t1 | Q43077 | 57.2 | 668 | 278 | 3 | 6 | 670 | 11 | 673 | 8.8e-239 | 827.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26906.t1 | G7ID65 | 96.0 | 673 | 27 | 0 | 1 | 673 | 3 | 675 | 0.0e+00 | 1362.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052700 | MS.gene26906 | 0.829111 | 6.18E-55 | -1.69E-46 |
| MS.gene060561 | MS.gene26906 | 0.810614 | 1.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26906 | MS.gene006471 | PPI |
| MS.gene26906 | MS.gene26004 | PPI |
| MS.gene26906 | MS.gene80063 | PPI |
| MS.gene26906 | MS.gene70667 | PPI |
| MS.gene26906 | MS.gene33550 | PPI |
| MS.gene26906 | MS.gene022340 | PPI |
| MS.gene26906 | MS.gene26902 | PPI |
| MS.gene26906 | MS.gene74836 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26906.t1 | MTR_1g104590 | 95.988 | 673 | 27 | 0 | 1 | 673 | 3 | 675 | 0.0 | 1358 |
| MS.gene26906.t1 | MTR_4g117660 | 56.250 | 672 | 286 | 3 | 3 | 670 | 7 | 674 | 0.0 | 815 |
| MS.gene26906.t1 | MTR_4g045887 | 57.463 | 670 | 277 | 3 | 3 | 669 | 7 | 671 | 0.0 | 807 |
| MS.gene26906.t1 | MTR_4g117610 | 56.593 | 675 | 280 | 5 | 1 | 670 | 1 | 667 | 0.0 | 794 |
| MS.gene26906.t1 | MTR_4g117670 | 60.536 | 560 | 220 | 1 | 110 | 669 | 31 | 589 | 0.0 | 747 |
| MS.gene26906.t1 | MTR_1g104550 | 53.323 | 632 | 288 | 2 | 25 | 656 | 34 | 658 | 0.0 | 740 |
| MS.gene26906.t1 | MTR_3g080500 | 46.728 | 657 | 335 | 8 | 25 | 672 | 78 | 728 | 0.0 | 609 |
| MS.gene26906.t1 | MTR_3g077080 | 29.369 | 681 | 415 | 23 | 25 | 656 | 8 | 671 | 3.43e-77 | 261 |
| MS.gene26906.t1 | MTR_3g077080 | 29.369 | 681 | 415 | 23 | 25 | 656 | 73 | 736 | 1.63e-76 | 261 |
| MS.gene26906.t1 | MTR_8g069505 | 28.714 | 700 | 437 | 20 | 2 | 656 | 13 | 695 | 8.46e-75 | 255 |
| MS.gene26906.t1 | MTR_8g069505 | 29.247 | 677 | 421 | 19 | 25 | 656 | 8 | 671 | 1.19e-74 | 254 |
| MS.gene26906.t1 | MTR_8g069505 | 28.714 | 700 | 437 | 20 | 2 | 656 | 63 | 745 | 2.47e-74 | 254 |
| MS.gene26906.t1 | MTR_8g069505 | 29.247 | 677 | 421 | 19 | 25 | 656 | 69 | 732 | 4.12e-74 | 254 |
| MS.gene26906.t1 | MTR_5g033170 | 29.265 | 680 | 418 | 21 | 25 | 656 | 44 | 708 | 4.90e-73 | 250 |
| MS.gene26906.t1 | MTR_3g077080 | 30.885 | 531 | 331 | 16 | 146 | 656 | 1 | 515 | 3.94e-71 | 241 |
| MS.gene26906.t1 | MTR_5g033170 | 29.192 | 668 | 410 | 21 | 25 | 644 | 44 | 696 | 1.94e-70 | 243 |
| MS.gene26906.t1 | MTR_8g069505 | 28.161 | 522 | 315 | 18 | 2 | 480 | 63 | 567 | 2.70e-47 | 177 |
| MS.gene26906.t1 | MTR_8g069505 | 28.858 | 499 | 299 | 17 | 25 | 480 | 8 | 493 | 3.37e-47 | 176 |
| MS.gene26906.t1 | MTR_8g069505 | 28.161 | 522 | 315 | 18 | 2 | 480 | 63 | 567 | 3.70e-47 | 177 |
| MS.gene26906.t1 | MTR_8g069505 | 28.858 | 499 | 299 | 17 | 25 | 480 | 69 | 554 | 6.37e-47 | 176 |
| MS.gene26906.t1 | MTR_4g098910 | 42.574 | 101 | 54 | 2 | 58 | 157 | 27 | 124 | 9.17e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26906.t1 | AT1G31690 | 61.256 | 653 | 248 | 4 | 24 | 673 | 26 | 676 | 0.0 | 852 |
| MS.gene26906.t1 | AT1G31710 | 58.896 | 652 | 260 | 5 | 25 | 670 | 28 | 677 | 0.0 | 820 |
| MS.gene26906.t1 | AT1G31670 | 56.951 | 669 | 265 | 7 | 9 | 673 | 91 | 740 | 0.0 | 799 |
| MS.gene26906.t1 | AT4G14940 | 50.992 | 655 | 307 | 5 | 6 | 656 | 5 | 649 | 0.0 | 704 |
| MS.gene26906.t1 | AT4G12290 | 46.165 | 665 | 332 | 10 | 25 | 672 | 82 | 737 | 0.0 | 613 |
| MS.gene26906.t1 | AT1G62810 | 46.697 | 651 | 331 | 9 | 16 | 658 | 53 | 695 | 0.0 | 605 |
| MS.gene26906.t1 | AT3G43670 | 43.884 | 654 | 339 | 10 | 17 | 656 | 35 | 674 | 0.0 | 569 |
| MS.gene26906.t1 | AT4G12290 | 44.908 | 599 | 304 | 10 | 25 | 606 | 82 | 671 | 3.06e-179 | 525 |
| MS.gene26906.t1 | AT4G12280 | 52.249 | 289 | 130 | 2 | 389 | 669 | 5 | 293 | 6.45e-105 | 321 |
| MS.gene26906.t1 | AT4G12270 | 40.674 | 386 | 189 | 10 | 25 | 384 | 84 | 455 | 9.71e-90 | 287 |
| MS.gene26906.t1 | AT2G42490 | 28.614 | 678 | 424 | 17 | 25 | 656 | 80 | 743 | 2.54e-76 | 260 |
Find 166 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGGCTTACTGGTATATT+AGG | 0.165498 | 1.4:-80483812 | MS.gene26906:CDS |
| ATTGATGCTAAAGAAATTAT+TGG | 0.173562 | 1.4:+80484550 | None:intergenic |
| CACCTTTGTCAAGACAAATT+TGG | 0.177990 | 1.4:-80483648 | MS.gene26906:CDS |
| TTAAAATAGGTTGGGCTTAC+TGG | 0.179307 | 1.4:-80483821 | MS.gene26906:intron |
| ACAAAACAAGGAAATCAAAT+TGG | 0.202546 | 1.4:-80483482 | MS.gene26906:CDS |
| CCGTTTGGTCCAAAGCTTAA+AGG | 0.225115 | 1.4:-80485809 | MS.gene26906:CDS |
| CTTTGATCAGTTGGGCCAAT+TGG | 0.227450 | 1.4:-80484606 | MS.gene26906:intron |
| TACTTTGATTGTGGTGAATA+TGG | 0.233955 | 1.4:-80484421 | MS.gene26906:CDS |
| TACTCAGTTCCTTCAGCTTT+TGG | 0.241847 | 1.4:+80485854 | None:intergenic |
| CTTTAGCAGTTTGGAGTCTA+AGG | 0.250428 | 1.4:-80483295 | MS.gene26906:intron |
| AGGATTCCTCTCAAAGAAAT+TGG | 0.255874 | 1.4:+80483022 | None:intergenic |
| CCCAATTGTGCATCCACTTT+TGG | 0.267431 | 1.4:-80483441 | MS.gene26906:CDS |
| TACTGGTATATTAGGGATTA+AGG | 0.267723 | 1.4:-80483804 | MS.gene26906:CDS |
| AAAGAAATCACCACTTCATT+TGG | 0.267968 | 1.4:+80484223 | None:intergenic |
| CTTGAATGTCGAATCCTAAA+TGG | 0.275025 | 1.4:+80484578 | None:intergenic |
| ATTGGGTACCGTTTGCTTCC+AGG | 0.303677 | 1.4:-80483464 | MS.gene26906:CDS |
| TTCTTTGATTTGATCTGTAT+TGG | 0.307370 | 1.4:+80483769 | None:intergenic |
| AGAACAAGGATATTGTATTA+TGG | 0.321872 | 1.4:-80483130 | MS.gene26906:CDS |
| ACCAAAAGTGGATGCACAAT+TGG | 0.328090 | 1.4:+80483440 | None:intergenic |
| TATCTTGACCTTGACATTGA+TGG | 0.340459 | 1.4:-80483680 | MS.gene26906:CDS |
| TTGGGCTTACTGGTATATTA+GGG | 0.355547 | 1.4:-80483811 | MS.gene26906:CDS |
| GTGATGATACTTTAGCAGTT+TGG | 0.361600 | 1.4:-80483304 | MS.gene26906:CDS |
| AGGAATATGACTGCATTCTA+TGG | 0.363674 | 1.4:+80486459 | None:intergenic |
| CAATACCTAGGAAAAGTTAT+TGG | 0.365047 | 1.4:-80483601 | MS.gene26906:CDS |
| ATTATGATTATGTTATAGAT+TGG | 0.365376 | 1.4:-80484066 | MS.gene26906:CDS |
| ACAGATATGCCTTTAAGCTT+TGG | 0.374151 | 1.4:+80485800 | None:intergenic |
| GTCAAGCCTTTGTTATAGTA+AGG | 0.374874 | 1.4:-80486252 | MS.gene26906:CDS |
| GATGATTATCCACAGATTAG+AGG | 0.375745 | 1.4:-80483413 | MS.gene26906:CDS |
| AAAGCATTAGATATCTTAAC+AGG | 0.379099 | 1.4:+80484304 | None:intergenic |
| AATGTCAAGGTCAAGATAAT+AGG | 0.382154 | 1.4:+80483685 | None:intergenic |
| ACCATTCTTCACTTGGGTCT+TGG | 0.384600 | 1.4:+80484455 | None:intergenic |
| TTTGATCAGTTGGGCCAATT+GGG | 0.389327 | 1.4:-80484605 | MS.gene26906:intron |
| AAGAAATCACCACTTCATTT+GGG | 0.391853 | 1.4:+80484224 | None:intergenic |
| CATACAACAAAACTGAGAAA+TGG | 0.397433 | 1.4:-80483358 | MS.gene26906:CDS |
| TTAATTTCTGAAGGTGTTAG+AGG | 0.398419 | 1.4:+80486424 | None:intergenic |
| AGGTGGTGGAGGAAGAGTTT+TGG | 0.399864 | 1.4:+80486276 | None:intergenic |
| AAAAGTGAGGTTGTGGTGTT+TGG | 0.400183 | 1.4:+80486366 | None:intergenic |
| CTTGATGAAATGAGAATTGT+TGG | 0.407335 | 1.4:-80485905 | MS.gene26906:CDS |
| TGAGGTTGTGGTGTTTGGTT+TGG | 0.407503 | 1.4:+80486371 | None:intergenic |
| ATTTCATCATGTTCCTTCTC+AGG | 0.409173 | 1.4:-80483096 | MS.gene26906:CDS |
| TTCTTCAACGAATGTTTAAA+CGG | 0.416479 | 1.4:+80486088 | None:intergenic |
| CCACTCAACGTAGGCATGAC+TGG | 0.418913 | 1.4:+80483065 | None:intergenic |
| TCTTCACTTGGGTCTTGGTA+TGG | 0.419526 | 1.4:+80484460 | None:intergenic |
| TAATCATCATTTACCAAAAG+TGG | 0.421314 | 1.4:+80483428 | None:intergenic |
| TTGGGCCAATGCATAGGCTT+TGG | 0.427838 | 1.4:+80482981 | None:intergenic |
| CCATCCAAGGTCACTCCGTC+AGG | 0.427909 | 1.4:-80485751 | MS.gene26906:intron |
| GTGTAATACCATTCTTCACT+TGG | 0.433020 | 1.4:+80484448 | None:intergenic |
| GATTGTGGTGAATATGGCTT+TGG | 0.433096 | 1.4:-80484415 | MS.gene26906:CDS |
| GTTTGGTTTGGTATGATTTG+AGG | 0.437353 | 1.4:+80486383 | None:intergenic |
| TTATGATTATGTTATAGATT+GGG | 0.441321 | 1.4:-80484065 | MS.gene26906:CDS |
| ATACAACAAAACTGAGAAAT+GGG | 0.441699 | 1.4:-80483357 | MS.gene26906:CDS |
| GTGAAGTGTTATTACAAGAA+TGG | 0.446073 | 1.4:-80485980 | MS.gene26906:CDS |
| CAAGTGGTAGCATCAAGCTT+GGG | 0.452360 | 1.4:-80484033 | MS.gene26906:CDS |
| ATGATTTGAGGATTATGTTA+CGG | 0.452510 | 1.4:+80486395 | None:intergenic |
| TGATTGGATGAGAGGTTTGT+CGG | 0.455041 | 1.4:+80486321 | None:intergenic |
| ATCCTTTGTATAGTACTTCA+CGG | 0.458399 | 1.4:+80484503 | None:intergenic |
| GGCTACCCTATCCTTACCTT+TGG | 0.459203 | 1.4:-80486151 | MS.gene26906:CDS |
| CCAAAAGTGGATGCACAATT+GGG | 0.462247 | 1.4:+80483441 | None:intergenic |
| GTTAGAGGGTCAAGTGGGTG+AGG | 0.473682 | 1.4:+80486439 | None:intergenic |
| CAAGATAATAGGTAAAGAAA+TGG | 0.475626 | 1.4:+80483696 | None:intergenic |
| GATTGGATGAGAGGTTTGTC+GGG | 0.476595 | 1.4:+80486322 | None:intergenic |
| GGATAGGGAGATTGAGAACA+AGG | 0.479632 | 1.4:-80483144 | MS.gene26906:CDS |
| TGTTCACCAAAGGTAAGGAT+AGG | 0.481924 | 1.4:+80486145 | None:intergenic |
| CAAAACAAGGAAATCAAATT+GGG | 0.482146 | 1.4:-80483481 | MS.gene26906:CDS |
| AAAACAATCCCTCGAAATCA+TGG | 0.482562 | 1.4:-80486224 | MS.gene26906:CDS |
| TCCTAAATGGAAAACCCAAT+TGG | 0.486397 | 1.4:+80484591 | None:intergenic |
| TTGGACTGTTGTAAAGGAAA+CGG | 0.489744 | 1.4:-80483582 | MS.gene26906:CDS |
| AAGTTATTGGACTGTTGTAA+AGG | 0.495057 | 1.4:-80483588 | MS.gene26906:CDS |
| ATTGTATTATGGCACACAAT+GGG | 0.500762 | 1.4:-80483119 | MS.gene26906:CDS |
| TCTAAGATGAAGCCACCGTT+TGG | 0.502594 | 1.4:-80485824 | MS.gene26906:CDS |
| TTCCTCTCAAAGAAATTGGT+TGG | 0.505842 | 1.4:+80483026 | None:intergenic |
| AGTGGATGCACAATTGGGCC+TGG | 0.506196 | 1.4:+80483446 | None:intergenic |
| CCTTTAAGCTTTGGACCAAA+CGG | 0.506349 | 1.4:+80485809 | None:intergenic |
| TTGGAACCTTACTATAACAA+AGG | 0.507441 | 1.4:+80486246 | None:intergenic |
| TACACAACCTACTTTGATTG+TGG | 0.507919 | 1.4:-80484430 | MS.gene26906:CDS |
| ATTTGTCTTGACAAAGGTGT+TGG | 0.508980 | 1.4:+80483652 | None:intergenic |
| GAATTGAATGTGTAGGGATA+GGG | 0.511193 | 1.4:-80483159 | MS.gene26906:intron |
| CTTTCACTAATTATAATGTG+TGG | 0.512457 | 1.4:-80483388 | MS.gene26906:CDS |
| TGTAATACCATTCTTCACTT+GGG | 0.512744 | 1.4:+80484449 | None:intergenic |
| GGTATATTAGGGATTAAGGC+AGG | 0.513268 | 1.4:-80483800 | MS.gene26906:CDS |
| GACCAACCAATTTCTTTGAG+AGG | 0.513325 | 1.4:-80483028 | MS.gene26906:CDS |
| CGGTTTGTTCACCAAAGGTA+AGG | 0.514359 | 1.4:+80486140 | None:intergenic |
| TGTTGGAGGATAGCCATGAT+TGG | 0.516217 | 1.4:+80486305 | None:intergenic |
| ACATAAGAGCATGAGGAGAA+AGG | 0.525403 | 1.4:+80486486 | None:intergenic |
| ACCAAGACCCAAGTGAAGAA+TGG | 0.525685 | 1.4:-80484456 | MS.gene26906:CDS |
| CCAAGTGGTAGCATCAAGCT+TGG | 0.529898 | 1.4:-80484034 | MS.gene26906:CDS |
| ACAAACCTCTCATCCAATCA+TGG | 0.531898 | 1.4:-80486318 | MS.gene26906:CDS |
| ACAAAGGCTTGACGAGGTGG+TGG | 0.532967 | 1.4:+80486262 | None:intergenic |
| ATTACCTGACGGAGTGACCT+TGG | 0.533638 | 1.4:+80485747 | None:intergenic |
| TTAAACGGTTCGTAGGTGAA+TGG | 0.536296 | 1.4:+80486103 | None:intergenic |
| CGGACAAGGTTAATTTCTGA+AGG | 0.539443 | 1.4:+80486415 | None:intergenic |
| TGTAAGCTTAATAGTGAGAT+CGG | 0.543713 | 1.4:-80484104 | MS.gene26906:CDS |
| TACGGTAGGTTGGTTTGGAG+AGG | 0.547168 | 1.4:-80486026 | MS.gene26906:CDS |
| GTGAGATCGGTTTCAACTGT+GGG | 0.550438 | 1.4:-80484091 | MS.gene26906:CDS |
| TCTAGGAAGACAGCATTGGC+AGG | 0.552138 | 1.4:+80484355 | None:intergenic |
| ATTGGATGGTGTGGCAGCTG+TGG | 0.554654 | 1.4:-80485933 | MS.gene26906:CDS |
| AAGGCTTGACGAGGTGGTGG+AGG | 0.554722 | 1.4:+80486265 | None:intergenic |
| CCAGTCATGCCTACGTTGAG+TGG | 0.556192 | 1.4:-80483065 | MS.gene26906:CDS |
| TAATGTTGAAAAGTGCAGTT+GGG | 0.556487 | 1.4:+80482963 | None:intergenic |
| AAAAGTCTACCATGATTTCG+AGG | 0.556844 | 1.4:+80486215 | None:intergenic |
| CTCCAAATTTGTCTTGACAA+AGG | 0.561847 | 1.4:+80483646 | None:intergenic |
| CTAATGTTGAAAAGTGCAGT+TGG | 0.562794 | 1.4:+80482962 | None:intergenic |
| GTGCAGTTGGGCCAATGCAT+AGG | 0.562944 | 1.4:+80482975 | None:intergenic |
| TTTCACTAATTATAATGTGT+GGG | 0.565859 | 1.4:-80483387 | MS.gene26906:CDS |
| GTTCACCAAAGGTAAGGATA+GGG | 0.566348 | 1.4:+80486146 | None:intergenic |
| GATAGCCATGATTGGATGAG+AGG | 0.567567 | 1.4:+80486313 | None:intergenic |
| TTGCTAGCTGATAACACCAT+TGG | 0.576690 | 1.4:-80483731 | MS.gene26906:CDS |
| TAATTTGTATGCAAGACCAT+TGG | 0.579859 | 1.4:-80485951 | MS.gene26906:CDS |
| AAAGTCTACCATGATTTCGA+GGG | 0.581187 | 1.4:+80486216 | None:intergenic |
| AACAAAACTGAGAAATGGGC+AGG | 0.581483 | 1.4:-80483353 | MS.gene26906:CDS |
| TAATTTCTGAAGGTGTTAGA+GGG | 0.583888 | 1.4:+80486425 | None:intergenic |
| ACTGGATAATCTTCCTGAGA+AGG | 0.584969 | 1.4:+80483083 | None:intergenic |
| CAAATCAAAGAAGACATACA+TGG | 0.588282 | 1.4:-80483758 | MS.gene26906:CDS |
| GTCATGCCTACGTTGAGTGG+TGG | 0.588484 | 1.4:-80483062 | MS.gene26906:CDS |
| TGTGGCAGATAACTGAGGTC+AGG | 0.588686 | 1.4:-80484132 | MS.gene26906:intron |
| CCAAGCTTGATGCTACCACT+TGG | 0.590234 | 1.4:+80484034 | None:intergenic |
| ATTCCAGTGCCAAAAGCTGA+AGG | 0.590477 | 1.4:-80485863 | MS.gene26906:CDS |
| GGACCTGGTTTCACCATCCA+AGG | 0.591002 | 1.4:-80485764 | MS.gene26906:CDS |
| TAAGCCTTCTGAGTTAGTAG+TGG | 0.591259 | 1.4:-80483522 | MS.gene26906:CDS |
| TATTGTATTATGGCACACAA+TGG | 0.591427 | 1.4:-80483120 | MS.gene26906:CDS |
| ATATTCACCACAATCAAAGT+AGG | 0.591448 | 1.4:+80484423 | None:intergenic |
| CGAATGTTTAAACGGTTCGT+AGG | 0.592465 | 1.4:+80486096 | None:intergenic |
| AAGCAGAATAGTATGCGTCT+AGG | 0.592646 | 1.4:+80484338 | None:intergenic |
| TTAGGATTCGACATTCAAGT+TGG | 0.594138 | 1.4:-80484574 | MS.gene26906:CDS |
| AATTGCAATCCCAAATGAAG+TGG | 0.594960 | 1.4:-80484233 | MS.gene26906:intron |
| AATCACCAAAGCCTATGCAT+TGG | 0.596584 | 1.4:-80482986 | MS.gene26906:CDS |
| GTGAAAGCACCTCTAATCTG+TGG | 0.599693 | 1.4:+80483404 | None:intergenic |
| TGCGTCTAGGAAGACAGCAT+TGG | 0.603158 | 1.4:+80484351 | None:intergenic |
| TGAAAGATCAAACAATACCT+AGG | 0.603738 | 1.4:-80483613 | MS.gene26906:CDS |
| TGAGGATTATGTTACGGACA+AGG | 0.606056 | 1.4:+80486401 | None:intergenic |
| TTTACCACTACTAACTCAGA+AGG | 0.609750 | 1.4:+80483518 | None:intergenic |
| CAATTGGGCCTGGAAGCAAA+CGG | 0.613823 | 1.4:+80483456 | None:intergenic |
| GATTGGGAGTTTAAGCCAAG+TGG | 0.613885 | 1.4:-80484049 | MS.gene26906:CDS |
| ATCTCAACAAAACTCTACAA+AGG | 0.617196 | 1.4:-80486178 | MS.gene26906:CDS |
| TGCAAGACCATTGGATGGTG+TGG | 0.618597 | 1.4:-80485942 | MS.gene26906:CDS |
| CGTAGTGAAAAGTGAGGTTG+TGG | 0.618977 | 1.4:+80486359 | None:intergenic |
| TGACCTTGGATGGTGAAACC+AGG | 0.621250 | 1.4:+80485761 | None:intergenic |
| TTGGCAGGACAATCTGTGAA+AGG | 0.622053 | 1.4:+80484370 | None:intergenic |
| AAGTGGTAGCATCAAGCTTG+GGG | 0.623421 | 1.4:-80484032 | MS.gene26906:intron |
| GCATACTATTCTGCTTCAGA+TGG | 0.624085 | 1.4:-80484331 | MS.gene26906:CDS |
| TGGAGTTACATAAGAGCATG+AGG | 0.626969 | 1.4:+80486479 | None:intergenic |
| CCTGACGGAGTGACCTTGGA+TGG | 0.627284 | 1.4:+80485751 | None:intergenic |
| TGGCTTCACCATCAATGTCA+AGG | 0.628699 | 1.4:+80483672 | None:intergenic |
| GAAGGTGTTAGAGGGTCAAG+TGG | 0.633794 | 1.4:+80486433 | None:intergenic |
| GCTGATGCAAGAGTCAACAT+TGG | 0.634134 | 1.4:-80483548 | MS.gene26906:CDS |
| TTAAGCTTTGGACCAAACGG+TGG | 0.635575 | 1.4:+80485812 | None:intergenic |
| ACAGCTGCCACACCATCCAA+TGG | 0.636523 | 1.4:+80485935 | None:intergenic |
| ATAACAAAGGCTTGACGAGG+TGG | 0.642331 | 1.4:+80486259 | None:intergenic |
| GTATATTAGGGATTAAGGCA+GGG | 0.645710 | 1.4:-80483799 | MS.gene26906:CDS |
| TGCAACGGTTTGTTCACCAA+AGG | 0.647871 | 1.4:+80486135 | None:intergenic |
| AGTGAGATCGGTTTCAACTG+TGG | 0.648718 | 1.4:-80484092 | MS.gene26906:CDS |
| GTAAGTCAACATGATGGACC+TGG | 0.649655 | 1.4:-80485779 | MS.gene26906:CDS |
| TACCGTGAAGTACTATACAA+AGG | 0.653255 | 1.4:-80484505 | MS.gene26906:CDS |
| AAAACTGAGAAATGGGCAGG+AGG | 0.656721 | 1.4:-80483350 | MS.gene26906:CDS |
| ACAAAACTCTACAAAGGACA+AGG | 0.665601 | 1.4:-80486172 | MS.gene26906:CDS |
| TTATATGTTGATCATAGCAG+AGG | 0.670339 | 1.4:-80483326 | MS.gene26906:CDS |
| TTGTATGCAAGACCATTGGA+TGG | 0.671497 | 1.4:-80485947 | MS.gene26906:CDS |
| AAGGTGTTAGAGGGTCAAGT+GGG | 0.671650 | 1.4:+80486434 | None:intergenic |
| ATGGTCATGATAGACACCAA+TGG | 0.677878 | 1.4:+80483715 | None:intergenic |
| ATATCTGTAAGTCAACATGA+TGG | 0.685391 | 1.4:-80485785 | MS.gene26906:CDS |
| GAATGGTAACTGTGATGCAA+CGG | 0.687125 | 1.4:+80486120 | None:intergenic |
| ACTATAACAAAGGCTTGACG+AGG | 0.720166 | 1.4:+80486256 | None:intergenic |
| TCAAATCCACCACTCAACGT+AGG | 0.724526 | 1.4:+80483056 | None:intergenic |
| ATCCTACGTAGTGAAAAGTG+AGG | 0.731935 | 1.4:+80486353 | None:intergenic |
| AGTATGCTGGTGATATCATG+TGG | 0.737902 | 1.4:-80484267 | MS.gene26906:CDS |
| TTGTGTGTGGCAGATAACTG+AGG | 0.795071 | 1.4:-80484137 | MS.gene26906:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAATTAAGAATTGAAA+AGG | + | chr1.4:80484433-80484452 | None:intergenic | 10.0% |
| !! | ATTCAAATTATAAAATGATA+TGG | + | chr1.4:80484344-80484363 | None:intergenic | 10.0% |
| !!! | TAAGTCTTTATAATTTTTTT+TGG | - | chr1.4:80484163-80484182 | MS.gene26906:intron | 10.0% |
| !! | ATTATGATTATGTTATAGAT+TGG | - | chr1.4:80485404-80485423 | MS.gene26906:intron | 15.0% |
| !! | TAGAAAAACACATTATTAAT+GGG | + | chr1.4:80484663-80484682 | None:intergenic | 15.0% |
| !! | TTAGAAAAACACATTATTAA+TGG | + | chr1.4:80484664-80484683 | None:intergenic | 15.0% |
| !! | TTATGATTATGTTATAGATT+GGG | - | chr1.4:80485405-80485424 | MS.gene26906:intron | 15.0% |
| !!! | GTTTTTAAATTCAATATTAC+TGG | + | chr1.4:80484473-80484492 | None:intergenic | 15.0% |
| !! | AACAACTAATTACAAACTTA+TGG | + | chr1.4:80485600-80485619 | None:intergenic | 20.0% |
| !! | AAGGATCAAATTGAATATTT+AGG | - | chr1.4:80483942-80483961 | MS.gene26906:intron | 20.0% |
| !! | ATATATAAATTAGCGACTAA+TGG | - | chr1.4:80483807-80483826 | MS.gene26906:CDS | 20.0% |
| !! | ATTGATGCTAAAGAAATTAT+TGG | + | chr1.4:80484923-80484942 | None:intergenic | 20.0% |
| !! | CCTAATAAAAAAACAAAACA+AGG | - | chr1.4:80485976-80485995 | MS.gene26906:CDS | 20.0% |
| !! | CTATATATGCATAAAACATT+TGG | + | chr1.4:80485478-80485497 | None:intergenic | 20.0% |
| !! | TAAAAAACTACAATGATTGA+TGG | - | chr1.4:80484749-80484768 | MS.gene26906:intron | 20.0% |
| !! | TAATGCATAATATTAGTGTA+AGG | + | chr1.4:80484051-80484070 | None:intergenic | 20.0% |
| !! | TTAGAAAAACACATGTTAAT+GGG | + | chr1.4:80484400-80484419 | None:intergenic | 20.0% |
| !! | TTCATTCATATTAGATATGT+TGG | + | chr1.4:80484798-80484817 | None:intergenic | 20.0% |
| !! | TTTCACTAATTATAATGTGT+GGG | - | chr1.4:80486083-80486102 | MS.gene26906:CDS | 20.0% |
| !!! | AATGTTGTCTAATTTTTTTG+TGG | - | chr1.4:80484003-80484022 | MS.gene26906:intron | 20.0% |
| !!! | CCTTGTTTTGTTTTTTTATT+AGG | + | chr1.4:80485979-80485998 | None:intergenic | 20.0% |
| !!! | CTTCAAACTATGTTTTTTTA+AGG | + | chr1.4:80484136-80484155 | None:intergenic | 20.0% |
| !!! | GCTATATTTTAAAATAGGTT+GGG | - | chr1.4:80485641-80485660 | MS.gene26906:intron | 20.0% |
| !!! | TGCATGCTATATTTTAAAAT+AGG | - | chr1.4:80485636-80485655 | MS.gene26906:intron | 20.0% |
| !!! | TGCTATATTTTAAAATAGGT+TGG | - | chr1.4:80485640-80485659 | MS.gene26906:intron | 20.0% |
| !!! | TTTGTTTCTTTAATCAAACT+TGG | - | chr1.4:80485519-80485538 | MS.gene26906:intron | 20.0% |
| !!! | TTTTAAAACTGTTATACTGT+TGG | - | chr1.4:80484213-80484232 | MS.gene26906:intron | 20.0% |
| ! | AAAAACTACAATGATTCTGA+TGG | - | chr1.4:80484487-80484506 | MS.gene26906:CDS | 25.0% |
| ! | ACAAAACAAGGAAATCAAAT+TGG | - | chr1.4:80485988-80486007 | MS.gene26906:CDS | 25.0% |
| ! | AGAACAAGGATATTGTATTA+TGG | - | chr1.4:80486340-80486359 | MS.gene26906:CDS | 25.0% |
| ! | ATACAACAAAACTGAGAAAT+GGG | - | chr1.4:80486113-80486132 | MS.gene26906:CDS | 25.0% |
| ! | ATATAGTCATGCTTGAAATT+TGG | - | chr1.4:80485492-80485511 | MS.gene26906:intron | 25.0% |
| ! | ATGAATTGAATTGAATGTGT+AGG | - | chr1.4:80486304-80486323 | MS.gene26906:CDS | 25.0% |
| ! | ATGATTTGAGGATTATGTTA+CGG | + | chr1.4:80483078-80483097 | None:intergenic | 25.0% |
| ! | CAAAACAAGGAAATCAAATT+GGG | - | chr1.4:80485989-80486008 | MS.gene26906:CDS | 25.0% |
| ! | CAAAATTGTTAGGATGAAAT+TGG | + | chr1.4:80483774-80483793 | None:intergenic | 25.0% |
| ! | CAAGATAATAGGTAAAGAAA+TGG | + | chr1.4:80485777-80485796 | None:intergenic | 25.0% |
| ! | CATAATATTAGTGTAAGGTT+TGG | + | chr1.4:80484046-80484065 | None:intergenic | 25.0% |
| ! | CTTTCACTAATTATAATGTG+TGG | - | chr1.4:80486082-80486101 | MS.gene26906:CDS | 25.0% |
| ! | GTTAGAAAAACACATGTTAA+TGG | + | chr1.4:80484401-80484420 | None:intergenic | 25.0% |
| ! | GTTAGAATGCAAGAAAAAAA+TGG | + | chr1.4:80484581-80484600 | None:intergenic | 25.0% |
| ! | TAATCATCATTTACCAAAAG+TGG | + | chr1.4:80486045-80486064 | None:intergenic | 25.0% |
| ! | TGAATTGAATTGAATGTGTA+GGG | - | chr1.4:80486305-80486324 | MS.gene26906:CDS | 25.0% |
| ! | TGTTAATTAAGAGTTTGAAG+AGG | + | chr1.4:80484697-80484716 | None:intergenic | 25.0% |
| ! | TTCTTCAACGAATGTTTAAA+CGG | + | chr1.4:80483385-80483404 | None:intergenic | 25.0% |
| !! | AAACACATTATTAATGGGTA+TGG | + | chr1.4:80484658-80484677 | None:intergenic | 25.0% |
| !! | AAAGCATTAGATATCTTAAC+AGG | + | chr1.4:80485169-80485188 | None:intergenic | 25.0% |
| !! | ACAATTTTCTTTGATCAGTT+GGG | - | chr1.4:80484856-80484875 | MS.gene26906:intron | 25.0% |
| !! | GTGAGAAATTGTTAATGTTT+TGG | - | chr1.4:80486277-80486296 | MS.gene26906:CDS | 25.0% |
| !!! | TATCTTATTTTTGTGCTAAG+CGG | + | chr1.4:80484279-80484298 | None:intergenic | 25.0% |
| !!! | TCTAATTTTTTTGTGGTGAT+CGG | - | chr1.4:80484010-80484029 | MS.gene26906:intron | 25.0% |
| !!! | TTCTTTGATTTGATCTGTAT+TGG | + | chr1.4:80485704-80485723 | None:intergenic | 25.0% |
| !!! | TTTTTAAGGAACTTCAAACT+AGG | + | chr1.4:80484122-80484141 | None:intergenic | 25.0% |
| AAAACTTGCAAAACATGCAT+AGG | + | chr1.4:80484318-80484337 | None:intergenic | 30.0% | |
| AAAGAAATCACCACTTCATT+TGG | + | chr1.4:80485250-80485269 | None:intergenic | 30.0% | |
| AAATACTACATGCGTAATAG+TGG | - | chr1.4:80484554-80484573 | MS.gene26906:CDS | 30.0% | |
| AAGAAATCACCACTTCATTT+GGG | + | chr1.4:80485249-80485268 | None:intergenic | 30.0% | |
| AAGTTATTGGACTGTTGTAA+AGG | - | chr1.4:80485882-80485901 | MS.gene26906:CDS | 30.0% | |
| AATACTACATGCGTAATAGT+GGG | - | chr1.4:80484555-80484574 | MS.gene26906:CDS | 30.0% | |
| AATGTCAAGGTCAAGATAAT+AGG | + | chr1.4:80485788-80485807 | None:intergenic | 30.0% | |
| ACTTCAAACTAGGTTAAATG+CGG | + | chr1.4:80484112-80484131 | None:intergenic | 30.0% | |
| ATATCTGTAAGTCAACATGA+TGG | - | chr1.4:80483685-80483704 | MS.gene26906:CDS | 30.0% | |
| ATATTCACCACAATCAAAGT+AGG | + | chr1.4:80485050-80485069 | None:intergenic | 30.0% | |
| ATCCTTTGTATAGTACTTCA+CGG | + | chr1.4:80484970-80484989 | None:intergenic | 30.0% | |
| ATCTCAACAAAACTCTACAA+AGG | - | chr1.4:80483292-80483311 | MS.gene26906:intron | 30.0% | |
| ATGAGCAAGCCAAAATTTAA+TGG | + | chr1.4:80486206-80486225 | None:intergenic | 30.0% | |
| ATTGTATTATGGCACACAAT+GGG | - | chr1.4:80486351-80486370 | MS.gene26906:CDS | 30.0% | |
| CAAATCAAAGAAGACATACA+TGG | - | chr1.4:80485712-80485731 | MS.gene26906:intron | 30.0% | |
| CAATACCTAGGAAAAGTTAT+TGG | - | chr1.4:80485869-80485888 | MS.gene26906:CDS | 30.0% | |
| CATACAACAAAACTGAGAAA+TGG | - | chr1.4:80486112-80486131 | MS.gene26906:CDS | 30.0% | |
| CTTGATGAAATGAGAATTGT+TGG | - | chr1.4:80483565-80483584 | MS.gene26906:CDS | 30.0% | |
| TACTGGTATATTAGGGATTA+AGG | - | chr1.4:80485666-80485685 | MS.gene26906:intron | 30.0% | |
| TACTTTGATTGTGGTGAATA+TGG | - | chr1.4:80485049-80485068 | MS.gene26906:intron | 30.0% | |
| TATTGTATTATGGCACACAA+TGG | - | chr1.4:80486350-80486369 | MS.gene26906:CDS | 30.0% | |
| TGAAAGATCAAACAATACCT+AGG | - | chr1.4:80485857-80485876 | MS.gene26906:CDS | 30.0% | |
| TGTAAGCTTAATAGTGAGAT+CGG | - | chr1.4:80485366-80485385 | MS.gene26906:intron | 30.0% | |
| TGTAATACCATTCTTCACTT+GGG | + | chr1.4:80485024-80485043 | None:intergenic | 30.0% | |
| TGTGATGCAACAAAATTGTT+AGG | + | chr1.4:80483784-80483803 | None:intergenic | 30.0% | |
| TTATATGTTGATCATAGCAG+AGG | - | chr1.4:80486144-80486163 | MS.gene26906:CDS | 30.0% | |
| TTGGAACCTTACTATAACAA+AGG | + | chr1.4:80483227-80483246 | None:intergenic | 30.0% | |
| TTTACAAGACTATTACCTGA+CGG | + | chr1.4:80483737-80483756 | None:intergenic | 30.0% | |
| ! | AAGGTGAGTCCATTAAATTT+TGG | - | chr1.4:80486194-80486213 | MS.gene26906:CDS | 30.0% |
| ! | GACAATTTTCTTTGATCAGT+TGG | - | chr1.4:80484855-80484874 | MS.gene26906:intron | 30.0% |
| ! | GATCCTTCAAAATTTTCTTG+CGG | + | chr1.4:80483929-80483948 | None:intergenic | 30.0% |
| ! | GTATTTTCAAATATCAGCTG+TGG | + | chr1.4:80484540-80484559 | None:intergenic | 30.0% |
| ! | GTGAAGTGTTATTACAAGAA+TGG | - | chr1.4:80483490-80483509 | MS.gene26906:CDS | 30.0% |
| ! | TAATGTTGAAAAGTGCAGTT+GGG | + | chr1.4:80486510-80486529 | None:intergenic | 30.0% |
| ! | TAATTTGTATGCAAGACCAT+TGG | - | chr1.4:80483519-80483538 | MS.gene26906:CDS | 30.0% |
| ! | TTATGACTATTGATTGTGTG+TGG | - | chr1.4:80485320-80485339 | MS.gene26906:intron | 30.0% |
| !! | TAATTTCTGAAGGTGTTAGA+GGG | + | chr1.4:80483048-80483067 | None:intergenic | 30.0% |
| !! | TTAATTTCTGAAGGTGTTAG+AGG | + | chr1.4:80483049-80483068 | None:intergenic | 30.0% |
| !!! | CATTTCTCAGTTTTGTTGTA+TGG | + | chr1.4:80486114-80486133 | None:intergenic | 30.0% |
| !!! | CTAATTTTTTTGTGGTGATC+GGG | - | chr1.4:80484011-80484030 | MS.gene26906:intron | 30.0% |
| !!! | GGTGATTTTGTTTTAAGAAC+AGG | + | chr1.4:80486471-80486490 | None:intergenic | 30.0% |
| !!! | GTAGAGTTTTGTTGAGATTA+TGG | + | chr1.4:80483290-80483309 | None:intergenic | 30.0% |
| !!! | TAATTTTTTTGTGGTGATCG+GGG | - | chr1.4:80484012-80484031 | MS.gene26906:intron | 30.0% |
| !!! | TGTTTTATGTGCTGCTTTTA+CGG | - | chr1.4:80483426-80483445 | MS.gene26906:CDS | 30.0% |
| AAAACAATCCCTCGAAATCA+TGG | - | chr1.4:80483246-80483265 | MS.gene26906:intron | 35.0% | |
| AAAAGTCTACCATGATTTCG+AGG | + | chr1.4:80483258-80483277 | None:intergenic | 35.0% | |
| AAAGTCTACCATGATTTCGA+GGG | + | chr1.4:80483257-80483276 | None:intergenic | 35.0% | |
| AATTGCAATCCCAAATGAAG+TGG | - | chr1.4:80485237-80485256 | MS.gene26906:intron | 35.0% | |
| ACAAAACTCTACAAAGGACA+AGG | - | chr1.4:80483298-80483317 | MS.gene26906:CDS | 35.0% | |
| ACAGATATGCCTTTAAGCTT+TGG | + | chr1.4:80483673-80483692 | None:intergenic | 35.0% | |
| AGGAATATGACTGCATTCTA+TGG | + | chr1.4:80483014-80483033 | None:intergenic | 35.0% | |
| AGGATTCCTCTCAAAGAAAT+TGG | + | chr1.4:80486451-80486470 | None:intergenic | 35.0% | |
| ATTTCATCATGTTCCTTCTC+AGG | - | chr1.4:80486374-80486393 | MS.gene26906:CDS | 35.0% | |
| CACCTTTGTCAAGACAAATT+TGG | - | chr1.4:80485822-80485841 | MS.gene26906:CDS | 35.0% | |
| CTCCAAATTTGTCTTGACAA+AGG | + | chr1.4:80485827-80485846 | None:intergenic | 35.0% | |
| CTTGAATGTCGAATCCTAAA+TGG | + | chr1.4:80484895-80484914 | None:intergenic | 35.0% | |
| GAATTGAATGTGTAGGGATA+GGG | - | chr1.4:80486311-80486330 | MS.gene26906:CDS | 35.0% | |
| GATGATTATCCACAGATTAG+AGG | - | chr1.4:80486057-80486076 | MS.gene26906:CDS | 35.0% | |
| GTATATTAGGGATTAAGGCA+GGG | - | chr1.4:80485671-80485690 | MS.gene26906:intron | 35.0% | |
| GTGATGATACTTTAGCAGTT+TGG | - | chr1.4:80486166-80486185 | MS.gene26906:CDS | 35.0% | |
| GTGTAATACCATTCTTCACT+TGG | + | chr1.4:80485025-80485044 | None:intergenic | 35.0% | |
| TACACAACCTACTTTGATTG+TGG | - | chr1.4:80485040-80485059 | MS.gene26906:intron | 35.0% | |
| TATCTTGACCTTGACATTGA+TGG | - | chr1.4:80485790-80485809 | MS.gene26906:CDS | 35.0% | |
| TCCTAAATGGAAAACCCAAT+TGG | + | chr1.4:80484882-80484901 | None:intergenic | 35.0% | |
| TGAATTGAATGTGTAGGGAT+AGG | - | chr1.4:80486310-80486329 | MS.gene26906:CDS | 35.0% | |
| TTAGGATTCGACATTCAAGT+TGG | - | chr1.4:80484896-80484915 | MS.gene26906:intron | 35.0% | |
| TTCCTCTCAAAGAAATTGGT+TGG | + | chr1.4:80486447-80486466 | None:intergenic | 35.0% | |
| TTGGACTGTTGTAAAGGAAA+CGG | - | chr1.4:80485888-80485907 | MS.gene26906:CDS | 35.0% | |
| TTGGGCTTACTGGTATATTA+GGG | - | chr1.4:80485659-80485678 | MS.gene26906:intron | 35.0% | |
| TTTACCACTACTAACTCAGA+AGG | + | chr1.4:80485955-80485974 | None:intergenic | 35.0% | |
| TTTCAAATATCAGCTGTGGT+TGG | + | chr1.4:80484536-80484555 | None:intergenic | 35.0% | |
| ! | AAAACACATGTTAATGGGTC+AGG | + | chr1.4:80484395-80484414 | None:intergenic | 35.0% |
| ! | AAACACATGTTAATGGGTCA+GGG | + | chr1.4:80484394-80484413 | None:intergenic | 35.0% |
| ! | ACAGTCCAATAACTTTTCCT+AGG | + | chr1.4:80485877-80485896 | None:intergenic | 35.0% |
| ! | ATTTGTCTTGACAAAGGTGT+TGG | + | chr1.4:80485821-80485840 | None:intergenic | 35.0% |
| ! | CTAATGTTGAAAAGTGCAGT+TGG | + | chr1.4:80486511-80486530 | None:intergenic | 35.0% |
| ! | GTCAAGCCTTTGTTATAGTA+AGG | - | chr1.4:80483218-80483237 | MS.gene26906:intron | 35.0% |
| ! | TACCGTGAAGTACTATACAA+AGG | - | chr1.4:80484965-80484984 | MS.gene26906:intron | 35.0% |
| ! | TGATTTCGAGGGATTGTTTT+TGG | + | chr1.4:80483246-80483265 | None:intergenic | 35.0% |
| ! | TTAAAATAGGTTGGGCTTAC+TGG | - | chr1.4:80485649-80485668 | MS.gene26906:intron | 35.0% |
| !! | GTTTGGTTTGGTATGATTTG+AGG | + | chr1.4:80483090-80483109 | None:intergenic | 35.0% |
| !! | TGCATTTTTGAGAAGTATGC+TGG | - | chr1.4:80485190-80485209 | MS.gene26906:intron | 35.0% |
| !!! | AAGAGTTTTGGTTTTGGTGT+TGG | + | chr1.4:80483185-80483204 | None:intergenic | 35.0% |
| AAAAGTGAGGTTGTGGTGTT+TGG | + | chr1.4:80483107-80483126 | None:intergenic | 40.0% | |
| AACAAAACTGAGAAATGGGC+AGG | - | chr1.4:80486117-80486136 | MS.gene26906:CDS | 40.0% | |
| AAGCAGAATAGTATGCGTCT+AGG | + | chr1.4:80485135-80485154 | None:intergenic | 40.0% | |
| AATCACCAAAGCCTATGCAT+TGG | - | chr1.4:80486484-80486503 | MS.gene26906:CDS | 40.0% | |
| ACAAACCTCTCATCCAATCA+TGG | - | chr1.4:80483152-80483171 | MS.gene26906:intron | 40.0% | |
| ACCAAAAGTGGATGCACAAT+TGG | + | chr1.4:80486033-80486052 | None:intergenic | 40.0% | |
| ACTATAACAAAGGCTTGACG+AGG | + | chr1.4:80483217-80483236 | None:intergenic | 40.0% | |
| ACTGGATAATCTTCCTGAGA+AGG | + | chr1.4:80486390-80486409 | None:intergenic | 40.0% | |
| AGTATGCTGGTGATATCATG+TGG | - | chr1.4:80485203-80485222 | MS.gene26906:intron | 40.0% | |
| ATCCTACGTAGTGAAAAGTG+AGG | + | chr1.4:80483120-80483139 | None:intergenic | 40.0% | |
| ATGGTCATGATAGACACCAA+TGG | + | chr1.4:80485758-80485777 | None:intergenic | 40.0% | |
| CCAAAAGTGGATGCACAATT+GGG | + | chr1.4:80486032-80486051 | None:intergenic | 40.0% | |
| CGAATGTTTAAACGGTTCGT+AGG | + | chr1.4:80483377-80483396 | None:intergenic | 40.0% | |
| CGGACAAGGTTAATTTCTGA+AGG | + | chr1.4:80483058-80483077 | None:intergenic | 40.0% | |
| GAATGGTAACTGTGATGCAA+CGG | + | chr1.4:80483353-80483372 | None:intergenic | 40.0% | |
| GACCAACCAATTTCTTTGAG+AGG | - | chr1.4:80486442-80486461 | MS.gene26906:CDS | 40.0% | |
| GATTGTGGTGAATATGGCTT+TGG | - | chr1.4:80485055-80485074 | MS.gene26906:intron | 40.0% | |
| GCATACTATTCTGCTTCAGA+TGG | - | chr1.4:80485139-80485158 | MS.gene26906:intron | 40.0% | |
| GGTATATTAGGGATTAAGGC+AGG | - | chr1.4:80485670-80485689 | MS.gene26906:intron | 40.0% | |
| GTTCACCAAAGGTAAGGATA+GGG | + | chr1.4:80483327-80483346 | None:intergenic | 40.0% | |
| GTTGGGCTTACTGGTATATT+AGG | - | chr1.4:80485658-80485677 | MS.gene26906:intron | 40.0% | |
| TAAGCCTTCTGAGTTAGTAG+TGG | - | chr1.4:80485948-80485967 | MS.gene26906:CDS | 40.0% | |
| TGAGGATTATGTTACGGACA+AGG | + | chr1.4:80483072-80483091 | None:intergenic | 40.0% | |
| TGATTGGATGAGAGGTTTGT+CGG | + | chr1.4:80483152-80483171 | None:intergenic | 40.0% | |
| TGTTCACCAAAGGTAAGGAT+AGG | + | chr1.4:80483328-80483347 | None:intergenic | 40.0% | |
| TTAAACGGTTCGTAGGTGAA+TGG | + | chr1.4:80483370-80483389 | None:intergenic | 40.0% | |
| TTGCTAGCTGATAACACCAT+TGG | - | chr1.4:80485739-80485758 | MS.gene26906:intron | 40.0% | |
| TTGTATGCAAGACCATTGGA+TGG | - | chr1.4:80483523-80483542 | MS.gene26906:CDS | 40.0% | |
| TTGTCCTCGTAAGCTTAACT+CGG | + | chr1.4:80484084-80484103 | None:intergenic | 40.0% | |
| TTTGATCAGTTGGGCCAATT+GGG | - | chr1.4:80484865-80484884 | MS.gene26906:intron | 40.0% | |
| ! | ACATAAGAGCATGAGGAGAA+AGG | + | chr1.4:80482987-80483006 | None:intergenic | 40.0% |
| ! | CTTTAGCAGTTTGGAGTCTA+AGG | - | chr1.4:80486175-80486194 | MS.gene26906:CDS | 40.0% |
| ! | GAGCCGCAAGAAAATTTTGA+AGG | - | chr1.4:80483923-80483942 | MS.gene26906:intron | 40.0% |
| ! | GCCAATTGGGTTTTCCATTT+AGG | - | chr1.4:80484878-80484897 | MS.gene26906:intron | 40.0% |
| ! | TACTCAGTTCCTTCAGCTTT+TGG | + | chr1.4:80483619-80483638 | None:intergenic | 40.0% |
| ! | TGGAGTTACATAAGAGCATG+AGG | + | chr1.4:80482994-80483013 | None:intergenic | 40.0% |
| !! | AACCTCACTTTTCACTACGT+AGG | - | chr1.4:80483115-80483134 | MS.gene26906:CDS | 40.0% |
| !! | CCTTTAAGCTTTGGACCAAA+CGG | + | chr1.4:80483664-80483683 | None:intergenic | 40.0% |
| !!! | AGTTTTGGTTTTGGTGTTGG+AGG | + | chr1.4:80483182-80483201 | None:intergenic | 40.0% |
| !!! | TGGAGGAAGAGTTTTGGTTT+TGG | + | chr1.4:80483191-80483210 | None:intergenic | 40.0% |
| !!! | TTATGTGCTGCTTTTACGGT+AGG | - | chr1.4:80483430-80483449 | MS.gene26906:CDS | 40.0% |
| AAAACTGAGAAATGGGCAGG+AGG | - | chr1.4:80486120-80486139 | MS.gene26906:CDS | 45.0% | |
| AAGTGGTAGCATCAAGCTTG+GGG | - | chr1.4:80485438-80485457 | MS.gene26906:intron | 45.0% | |
| ACCAAGACCCAAGTGAAGAA+TGG | - | chr1.4:80485014-80485033 | MS.gene26906:intron | 45.0% | |
| ACCATTCTTCACTTGGGTCT+TGG | + | chr1.4:80485018-80485037 | None:intergenic | 45.0% | |
| ATAACAAAGGCTTGACGAGG+TGG | + | chr1.4:80483214-80483233 | None:intergenic | 45.0% | |
| ATTCCAGTGCCAAAAGCTGA+AGG | - | chr1.4:80483607-80483626 | MS.gene26906:CDS | 45.0% | |
| CAAGTGGTAGCATCAAGCTT+GGG | - | chr1.4:80485437-80485456 | MS.gene26906:intron | 45.0% | |
| CCGTTTGGTCCAAAGCTTAA+AGG | - | chr1.4:80483661-80483680 | MS.gene26906:CDS | 45.0% | |
| CGTAGTGAAAAGTGAGGTTG+TGG | + | chr1.4:80483114-80483133 | None:intergenic | 45.0% | |
| CTTTGATCAGTTGGGCCAAT+TGG | - | chr1.4:80484864-80484883 | MS.gene26906:intron | 45.0% | |
| GATAGCCATGATTGGATGAG+AGG | + | chr1.4:80483160-80483179 | None:intergenic | 45.0% | |
| GATTGGATGAGAGGTTTGTC+GGG | + | chr1.4:80483151-80483170 | None:intergenic | 45.0% | |
| GATTGGGAGTTTAAGCCAAG+TGG | - | chr1.4:80485421-80485440 | MS.gene26906:intron | 45.0% | |
| GCTGATGCAAGAGTCAACAT+TGG | - | chr1.4:80485922-80485941 | MS.gene26906:CDS | 45.0% | |
| GGATAGGGAGATTGAGAACA+AGG | - | chr1.4:80486326-80486345 | MS.gene26906:CDS | 45.0% | |
| TCAAATCCACCACTCAACGT+AGG | + | chr1.4:80486417-80486436 | None:intergenic | 45.0% | |
| TCTTCACTTGGGTCTTGGTA+TGG | + | chr1.4:80485013-80485032 | None:intergenic | 45.0% | |
| TGAGGTTGTGGTGTTTGGTT+TGG | + | chr1.4:80483102-80483121 | None:intergenic | 45.0% | |
| TGGCTTCACCATCAATGTCA+AGG | + | chr1.4:80485801-80485820 | None:intergenic | 45.0% | |
| TGTTGGAGGATAGCCATGAT+TGG | + | chr1.4:80483168-80483187 | None:intergenic | 45.0% | |
| TTGGCAGGACAATCTGTGAA+AGG | + | chr1.4:80485103-80485122 | None:intergenic | 45.0% | |
| TTGTGTGTGGCAGATAACTG+AGG | - | chr1.4:80485333-80485352 | MS.gene26906:intron | 45.0% | |
| ! | AAGGTGTTAGAGGGTCAAGT+GGG | + | chr1.4:80483039-80483058 | None:intergenic | 45.0% |
| ! | AGTGAGATCGGTTTCAACTG+TGG | - | chr1.4:80485378-80485397 | MS.gene26906:intron | 45.0% |
| ! | CCCAATTGTGCATCCACTTT+TGG | - | chr1.4:80486029-80486048 | MS.gene26906:CDS | 45.0% |
| ! | CGGTTTGTTCACCAAAGGTA+AGG | + | chr1.4:80483333-80483352 | None:intergenic | 45.0% |
| ! | GTGAGATCGGTTTCAACTGT+GGG | - | chr1.4:80485379-80485398 | MS.gene26906:intron | 45.0% |
| ! | TCTAAGATGAAGCCACCGTT+TGG | - | chr1.4:80483646-80483665 | MS.gene26906:CDS | 45.0% |
| ! | TGCAACGGTTTGTTCACCAA+AGG | + | chr1.4:80483338-80483357 | None:intergenic | 45.0% |
| !! | GTAAGTCAACATGATGGACC+TGG | - | chr1.4:80483691-80483710 | MS.gene26906:CDS | 45.0% |
| !! | GTGAAAGCACCTCTAATCTG+TGG | + | chr1.4:80486069-80486088 | None:intergenic | 45.0% |
| !! | TTAAGCTTTGGACCAAACGG+TGG | + | chr1.4:80483661-80483680 | None:intergenic | 45.0% |
| !!! | GCTTTTACGGTAGGTTGGTT+TGG | - | chr1.4:80483439-80483458 | MS.gene26906:CDS | 45.0% |
| ATTACCTGACGGAGTGACCT+TGG | + | chr1.4:80483726-80483745 | None:intergenic | 50.0% | |
| CAATTGGGCCTGGAAGCAAA+CGG | + | chr1.4:80486017-80486036 | None:intergenic | 50.0% | |
| CCAAGCTTGATGCTACCACT+TGG | + | chr1.4:80485439-80485458 | None:intergenic | 50.0% | |
| CCAAGTGGTAGCATCAAGCT+TGG | - | chr1.4:80485436-80485455 | MS.gene26906:intron | 50.0% | |
| GGCTACCCTATCCTTACCTT+TGG | - | chr1.4:80483319-80483338 | MS.gene26906:CDS | 50.0% | |
| GTAGCATCAAGCTTGGGGTA+TGG | - | chr1.4:80485443-80485462 | MS.gene26906:intron | 50.0% | |
| TCAGCCGAGTTAAGCTTACG+AGG | - | chr1.4:80484077-80484096 | MS.gene26906:CDS | 50.0% | |
| TGACCTTGGATGGTGAAACC+AGG | + | chr1.4:80483712-80483731 | None:intergenic | 50.0% | |
| TGCAAGACCATTGGATGGTG+TGG | - | chr1.4:80483528-80483547 | MS.gene26906:CDS | 50.0% | |
| TGCGTCTAGGAAGACAGCAT+TGG | + | chr1.4:80485122-80485141 | None:intergenic | 50.0% | |
| TGTGGCAGATAACTGAGGTC+AGG | - | chr1.4:80485338-80485357 | MS.gene26906:intron | 50.0% | |
| TTGGGCCAATGCATAGGCTT+TGG | + | chr1.4:80486492-80486511 | None:intergenic | 50.0% | |
| ! | ATTGGGTACCGTTTGCTTCC+AGG | - | chr1.4:80486006-80486025 | MS.gene26906:CDS | 50.0% |
| ! | GTTCCTTCAGCTTTTGGCAC+TGG | + | chr1.4:80483613-80483632 | None:intergenic | 50.0% |
| !! | GAAGGTGTTAGAGGGTCAAG+TGG | + | chr1.4:80483040-80483059 | None:intergenic | 50.0% |
| !! | TACGGTAGGTTGGTTTGGAG+AGG | - | chr1.4:80483444-80483463 | MS.gene26906:CDS | 50.0% |
| !! | TCTAGGAAGACAGCATTGGC+AGG | + | chr1.4:80485118-80485137 | None:intergenic | 50.0% |
| !!! | AGGTGGTGGAGGAAGAGTTT+TGG | + | chr1.4:80483197-80483216 | None:intergenic | 50.0% |
| !!! | GTGCTGCTTTTACGGTAGGT+TGG | - | chr1.4:80483434-80483453 | MS.gene26906:CDS | 50.0% |
| ACAAAGGCTTGACGAGGTGG+TGG | + | chr1.4:80483211-80483230 | None:intergenic | 55.0% | |
| ACAGCTGCCACACCATCCAA+TGG | + | chr1.4:80483538-80483557 | None:intergenic | 55.0% | |
| AGTGGATGCACAATTGGGCC+TGG | + | chr1.4:80486027-80486046 | None:intergenic | 55.0% | |
| ATTGGATGGTGTGGCAGCTG+TGG | - | chr1.4:80483537-80483556 | MS.gene26906:CDS | 55.0% | |
| CCACTCAACGTAGGCATGAC+TGG | + | chr1.4:80486408-80486427 | None:intergenic | 55.0% | |
| CCAGTCATGCCTACGTTGAG+TGG | - | chr1.4:80486405-80486424 | MS.gene26906:CDS | 55.0% | |
| GGACCTGGTTTCACCATCCA+AGG | - | chr1.4:80483706-80483725 | MS.gene26906:CDS | 55.0% | |
| GTCATGCCTACGTTGAGTGG+TGG | - | chr1.4:80486408-80486427 | MS.gene26906:CDS | 55.0% | |
| GTGCAGTTGGGCCAATGCAT+AGG | + | chr1.4:80486498-80486517 | None:intergenic | 55.0% | |
| GTTAGAGGGTCAAGTGGGTG+AGG | + | chr1.4:80483034-80483053 | None:intergenic | 55.0% | |
| CCATCCAAGGTCACTCCGTC+AGG | - | chr1.4:80483719-80483738 | MS.gene26906:CDS | 60.0% | |
| CCTGACGGAGTGACCTTGGA+TGG | + | chr1.4:80483722-80483741 | None:intergenic | 60.0% | |
| ! | AAGGCTTGACGAGGTGGTGG+AGG | + | chr1.4:80483208-80483227 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 80482962 | 80486530 | 80482962 | ID=MS.gene26906 |
| chr1.4 | mRNA | 80482962 | 80486530 | 80482962 | ID=MS.gene26906.t1;Parent=MS.gene26906 |
| chr1.4 | exon | 80485752 | 80486530 | 80485752 | ID=MS.gene26906.t1.exon1;Parent=MS.gene26906.t1 |
| chr1.4 | CDS | 80485752 | 80486530 | 80485752 | ID=cds.MS.gene26906.t1;Parent=MS.gene26906.t1 |
| chr1.4 | exon | 80484234 | 80484618 | 80484234 | ID=MS.gene26906.t1.exon2;Parent=MS.gene26906.t1 |
| chr1.4 | CDS | 80484234 | 80484618 | 80484234 | ID=cds.MS.gene26906.t1;Parent=MS.gene26906.t1 |
| chr1.4 | exon | 80484033 | 80484146 | 80484033 | ID=MS.gene26906.t1.exon3;Parent=MS.gene26906.t1 |
| chr1.4 | CDS | 80484033 | 80484146 | 80484033 | ID=cds.MS.gene26906.t1;Parent=MS.gene26906.t1 |
| chr1.4 | exon | 80483296 | 80483834 | 80483296 | ID=MS.gene26906.t1.exon4;Parent=MS.gene26906.t1 |
| chr1.4 | CDS | 80483296 | 80483834 | 80483296 | ID=cds.MS.gene26906.t1;Parent=MS.gene26906.t1 |
| chr1.4 | exon | 80482962 | 80483166 | 80482962 | ID=MS.gene26906.t1.exon5;Parent=MS.gene26906.t1 |
| chr1.4 | CDS | 80482962 | 80483166 | 80482962 | ID=cds.MS.gene26906.t1;Parent=MS.gene26906.t1 |
| Gene Sequence |
| Protein sequence |
