AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80066.t1 MTR_1g104590 95.840 673 28 0 1 673 3 675 0.0 1353
MS.gene80066.t1 MTR_4g117660 56.250 672 286 3 3 670 7 674 0.0 814
MS.gene80066.t1 MTR_4g045887 57.015 670 280 3 3 669 7 671 0.0 803
MS.gene80066.t1 MTR_4g117610 56.000 675 284 5 1 670 1 667 0.0 790
MS.gene80066.t1 MTR_4g117670 60.536 560 220 1 110 669 31 589 0.0 747
MS.gene80066.t1 MTR_1g104550 53.481 632 287 2 25 656 34 658 0.0 740
MS.gene80066.t1 MTR_3g080500 46.728 657 335 8 25 672 78 728 0.0 610
MS.gene80066.t1 MTR_3g077080 29.662 681 413 23 25 656 8 671 3.16e-77 261
MS.gene80066.t1 MTR_3g077080 29.662 681 413 23 25 656 73 736 1.06e-76 261
MS.gene80066.t1 MTR_8g069505 28.898 699 437 20 2 656 13 695 6.26e-76 258
MS.gene80066.t1 MTR_8g069505 29.438 676 421 19 25 656 8 671 9.26e-76 257
MS.gene80066.t1 MTR_8g069505 28.898 699 437 20 2 656 63 745 1.71e-75 258
MS.gene80066.t1 MTR_8g069505 29.438 676 421 19 25 656 69 732 2.18e-75 257
MS.gene80066.t1 MTR_5g033170 29.308 679 419 21 25 656 44 708 4.83e-74 253
MS.gene80066.t1 MTR_3g077080 31.073 531 330 16 146 656 1 515 5.28e-72 243
MS.gene80066.t1 MTR_5g033170 29.235 667 411 21 25 644 44 696 1.75e-71 246
MS.gene80066.t1 MTR_8g069505 28.215 521 316 18 2 480 63 567 1.29e-47 177
MS.gene80066.t1 MTR_8g069505 28.916 498 300 17 25 480 8 493 1.44e-47 177
MS.gene80066.t1 MTR_8g069505 28.215 521 316 18 2 480 63 567 1.77e-47 177
MS.gene80066.t1 MTR_8g069505 28.916 498 300 17 25 480 69 554 4.16e-47 176
MS.gene80066.t1 MTR_4g098910 40.594 101 56 2 58 157 27 124 9.60e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80066.t1 AT1G31690 60.796 653 251 4 24 673 26 676 0.0 845
MS.gene80066.t1 AT1G31710 58.896 652 260 5 25 670 28 677 0.0 819
MS.gene80066.t1 AT1G31670 57.100 669 264 7 9 673 91 740 0.0 797
MS.gene80066.t1 AT4G14940 51.145 655 306 5 6 656 5 649 0.0 703
MS.gene80066.t1 AT4G12290 46.316 665 331 10 25 672 82 737 0.0 615
MS.gene80066.t1 AT1G62810 46.851 651 330 9 16 658 53 695 0.0 607
MS.gene80066.t1 AT3G43670 43.884 654 339 10 17 656 35 674 0.0 568
MS.gene80066.t1 AT4G12290 45.075 599 303 10 25 606 82 671 6.30e-180 527
MS.gene80066.t1 AT4G12280 52.595 289 129 2 389 669 5 293 7.69e-106 323
MS.gene80066.t1 AT4G12270 40.933 386 188 10 25 384 84 455 7.53e-90 288
MS.gene80066.t1 AT2G42490 28.614 678 424 17 25 656 80 743 2.13e-76 260

Find 164 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTTGTCAAGACAAATT+TGG 0.163089 1.1:-74880785 MS.gene80066:CDS
GTTGGGCTTACTGGTATATT+AGG 0.165498 1.1:-74880949 MS.gene80066:CDS
TTAAAATAGGTTGGGCTTAC+TGG 0.179307 1.1:-74880958 MS.gene80066:intron
ACAAAACAAGGAAATCAAAT+TGG 0.202546 1.1:-74880619 MS.gene80066:CDS
CCGTTTGGTCCAAAGCTTAA+AGG 0.225115 1.1:-74883032 MS.gene80066:CDS
CTTTGATCAGTTGGGCCAAT+TGG 0.227450 1.1:-74881746 MS.gene80066:intron
TACTTTGATTGTGGTGAATA+TGG 0.233955 1.1:-74881561 MS.gene80066:CDS
CTTTAGCAGTTTGGAGTCTA+AGG 0.250428 1.1:-74880432 MS.gene80066:intron
AGGATTCCTCTCAAAGAAAT+TGG 0.255874 1.1:+74880158 None:intergenic
TACTCAGTCCCTTCAGCTTT+TGG 0.259526 1.1:+74883077 None:intergenic
CTCAATTGTGCATCCACTTT+TGG 0.264948 1.1:-74880578 MS.gene80066:CDS
TACTGGTATATTAGGGATTA+AGG 0.267723 1.1:-74880941 MS.gene80066:CDS
CTTGAATGTCGAATCCTAAA+TGG 0.275025 1.1:+74881718 None:intergenic
CTTGATGAAATGAGAATTCT+TGG 0.276428 1.1:-74883128 MS.gene80066:CDS
ATTGGGTACCGTTTGCTTCC+AGG 0.281181 1.1:-74880601 MS.gene80066:CDS
AAAGAAATTACCACTTCATT+TGG 0.299034 1.1:+74881363 None:intergenic
TTCTTTGATTTGATCTGTAT+TGG 0.307370 1.1:+74880906 None:intergenic
AGAACAAGGATATTGTATTA+TGG 0.321872 1.1:-74880266 MS.gene80066:CDS
TATCTTGACCTTGACATTGA+TGG 0.340459 1.1:-74880817 MS.gene80066:CDS
CGAATGTTTAAACGGTTCAT+AGG 0.351625 1.1:+74883319 None:intergenic
TTGGGCTTACTGGTATATTA+GGG 0.355547 1.1:-74880948 MS.gene80066:CDS
GTGATGATACTTTAGCAGTT+TGG 0.361600 1.1:-74880441 MS.gene80066:CDS
AGGAATATGACTGCATTCTA+TGG 0.363674 1.1:+74883682 None:intergenic
CAATACCTAGGAAAAGTTAT+TGG 0.365047 1.1:-74880738 MS.gene80066:CDS
ACAGATATGCCTTTAAGCTT+TGG 0.374151 1.1:+74883023 None:intergenic
GATGATTATCCACAGATTAG+AGG 0.375745 1.1:-74880550 MS.gene80066:CDS
ACTATGATTATGTTATAGAT+TGG 0.378562 1.1:-74881204 MS.gene80066:CDS
AAAGCATTAGATATCTTAAC+AGG 0.379099 1.1:+74881444 None:intergenic
AATGTCAAGGTCAAGATAAT+AGG 0.382154 1.1:+74880822 None:intergenic
ATTGATGCTAAAGAAACTAT+TGG 0.384586 1.1:+74881690 None:intergenic
ACCATTCTTCACTTGGGTCT+TGG 0.384600 1.1:+74881595 None:intergenic
TTTGATCAGTTGGGCCAATT+GGG 0.389327 1.1:-74881745 MS.gene80066:intron
CATACAACAAAACTGAGAAA+TGG 0.397433 1.1:-74880495 MS.gene80066:CDS
TTAATTTCTGAAGGTGTTAG+AGG 0.398419 1.1:+74883647 None:intergenic
AGGTGGTGGAGGAAGAGTTT+TGG 0.399864 1.1:+74883499 None:intergenic
AAAAGTGAGGTTGTGGTGTT+TGG 0.400183 1.1:+74883589 None:intergenic
TGAGGTTGTGGTGTTTGGTT+TGG 0.407503 1.1:+74883594 None:intergenic
ATTTCATCATGTTCCTTCTC+AGG 0.409173 1.1:-74880232 MS.gene80066:CDS
TTCTTCAACGAATGTTTAAA+CGG 0.416479 1.1:+74883311 None:intergenic
CCACTCAACGTAGGCATGAC+TGG 0.418913 1.1:+74880201 None:intergenic
TCTTCACTTGGGTCTTGGTA+TGG 0.419526 1.1:+74881600 None:intergenic
TAATCATCATTTACCAAAAG+TGG 0.421314 1.1:+74880565 None:intergenic
GTCAAGCCTTTGTCATAGTA+AGG 0.426454 1.1:-74883475 MS.gene80066:CDS
TTGGGCCAATGCATAGGCTT+TGG 0.427838 1.1:+74880117 None:intergenic
CCATCCAAGGTCACTCCGTC+AGG 0.427909 1.1:-74882974 MS.gene80066:intron
GTGTAATACCATTCTTCACT+TGG 0.433020 1.1:+74881588 None:intergenic
GATTGTGGTGAATATGGCTT+TGG 0.433096 1.1:-74881555 MS.gene80066:CDS
GTTTGGTTTGGTATGATTTG+AGG 0.437353 1.1:+74883606 None:intergenic
ATACAACAAAACTGAGAAAT+GGG 0.441699 1.1:-74880494 MS.gene80066:CDS
GTGAAGTGTTATTACAAGAA+TGG 0.446073 1.1:-74883203 MS.gene80066:CDS
CAAATCAAAGAAGACATTCA+TGG 0.451628 1.1:-74880895 MS.gene80066:CDS
CAAGTGGTAGCATCAAGCTT+GGG 0.452360 1.1:-74881171 MS.gene80066:CDS
ATGATTTGAGGATTATGTTA+CGG 0.452510 1.1:+74883618 None:intergenic
TGATTGGATGAGAGGTTTGT+CGG 0.455041 1.1:+74883544 None:intergenic
ATCCTTTGTATAGTACTTCA+CGG 0.458399 1.1:+74881643 None:intergenic
GGCTACCCTATCCTTACCTT+TGG 0.459203 1.1:-74883374 MS.gene80066:CDS
CTATGATTATGTTATAGATT+GGG 0.467003 1.1:-74881203 MS.gene80066:CDS
AAAACAATTCCTCGAAATCA+TGG 0.468335 1.1:-74883447 MS.gene80066:CDS
GTTAGAGGGTCAAGTGGGTG+AGG 0.473682 1.1:+74883662 None:intergenic
CAAGATAATAGGTAAAGAAA+TGG 0.475626 1.1:+74880833 None:intergenic
GATTGGATGAGAGGTTTGTC+GGG 0.476595 1.1:+74883545 None:intergenic
GGATAGGGAGATTGAGAACA+AGG 0.479632 1.1:-74880280 MS.gene80066:CDS
TGTTCACCAAAGGTAAGGAT+AGG 0.481924 1.1:+74883368 None:intergenic
CAAAACAAGGAAATCAAATT+GGG 0.482146 1.1:-74880618 MS.gene80066:CDS
TCCTAAATGGAAAACCCAAT+TGG 0.486397 1.1:+74881731 None:intergenic
TTGGACTGTTGTAAAGGAAA+CGG 0.489744 1.1:-74880719 MS.gene80066:CDS
ATTTGTCTTGACAAAGGAGT+TGG 0.491647 1.1:+74880789 None:intergenic
AAGTTATTGGACTGTTGTAA+AGG 0.495057 1.1:-74880725 MS.gene80066:CDS
ATTGTATTATGGCACACAAT+GGG 0.500762 1.1:-74880255 MS.gene80066:CDS
TCTAAGATGAAGCCACCGTT+TGG 0.502594 1.1:-74883047 MS.gene80066:CDS
TTCCTCTCAAAGAAATTGGT+TGG 0.505842 1.1:+74880162 None:intergenic
CCTTTAAGCTTTGGACCAAA+CGG 0.506349 1.1:+74883032 None:intergenic
TACACAACCTACTTTGATTG+TGG 0.507919 1.1:-74881570 MS.gene80066:CDS
TTTGTATGCAAGACCATTGG+AGG 0.509999 1.1:-74883171 MS.gene80066:CDS
GAATTGAATGTGTAGGGATA+GGG 0.511193 1.1:-74880295 MS.gene80066:intron
CTTTCACTAATTATAATGTG+TGG 0.512457 1.1:-74880525 MS.gene80066:CDS
TGTAATACCATTCTTCACTT+GGG 0.512744 1.1:+74881589 None:intergenic
GGTATATTAGGGATTAAGGC+AGG 0.513268 1.1:-74880937 MS.gene80066:CDS
GACCAACCAATTTCTTTGAG+AGG 0.513325 1.1:-74880164 MS.gene80066:CDS
TGTTGGAGGATAGCCATGAT+TGG 0.516217 1.1:+74883528 None:intergenic
AGTGGATGCACAATTGAGCC+TGG 0.520950 1.1:+74880583 None:intergenic
ACATAAGAGCATGAGGAGAA+AGG 0.525403 1.1:+74883709 None:intergenic
ACCAAGACCCAAGTGAAGAA+TGG 0.525685 1.1:-74881596 MS.gene80066:CDS
CCAAGTGGTAGCATCAAGCT+TGG 0.529898 1.1:-74881172 MS.gene80066:CDS
AAAAGTCTACCATGATTTCG+AGG 0.530174 1.1:+74883438 None:intergenic
TGGTTTGTTCACCAAAGGTA+AGG 0.530916 1.1:+74883363 None:intergenic
ACAAACCTCTCATCCAATCA+TGG 0.531898 1.1:-74883541 MS.gene80066:CDS
ACAAAGGCTTGACGAGGTGG+TGG 0.532967 1.1:+74883485 None:intergenic
ATTACCTGACGGAGTGACCT+TGG 0.533638 1.1:+74882970 None:intergenic
TTGGAACCTTACTATGACAA+AGG 0.533882 1.1:+74883469 None:intergenic
CGGACAAGGTTAATTTCTGA+AGG 0.539443 1.1:+74883638 None:intergenic
TGTAAGCTTAATAGTGAGAT+CGG 0.543713 1.1:-74881242 MS.gene80066:CDS
TACGGTAGGTTGGTTTGGAG+AGG 0.547168 1.1:-74883249 MS.gene80066:CDS
ATTGGAGGGTGTGGCAGCTG+TGG 0.548777 1.1:-74883156 MS.gene80066:CDS
GTGAGATCGGTTTCAACTGT+GGG 0.550438 1.1:-74881229 MS.gene80066:CDS
TCTAGGAAGACAGCATTGGC+AGG 0.552138 1.1:+74881495 None:intergenic
TTAAACGGTTCATAGGTGAA+TGG 0.552700 1.1:+74883326 None:intergenic
TGCAAGACCATTGGAGGGTG+TGG 0.554369 1.1:-74883165 MS.gene80066:CDS
AAGGCTTGACGAGGTGGTGG+AGG 0.554722 1.1:+74883488 None:intergenic
CCAGTCATGCCTACGTTGAG+TGG 0.556192 1.1:-74880201 MS.gene80066:CDS
TAATGTTGAAAAGTGCAGTT+GGG 0.556487 1.1:+74880099 None:intergenic
CTCCAAATTTGTCTTGACAA+AGG 0.558989 1.1:+74880783 None:intergenic
ATTCCAGTGCCAAAAGCTGA+AGG 0.560303 1.1:-74883086 MS.gene80066:CDS
CTAATGTTGAAAAGTGCAGT+TGG 0.562794 1.1:+74880098 None:intergenic
GTGCAGTTGGGCCAATGCAT+AGG 0.562944 1.1:+74880111 None:intergenic
TTTCACTAATTATAATGTGT+GGG 0.565859 1.1:-74880524 MS.gene80066:CDS
GTTCACCAAAGGTAAGGATA+GGG 0.566348 1.1:+74883369 None:intergenic
GATAGCCATGATTGGATGAG+AGG 0.567567 1.1:+74883536 None:intergenic
TAATTTGTATGCAAGACCAT+TGG 0.568732 1.1:-74883174 MS.gene80066:CDS
TGCAATGGTTTGTTCACCAA+AGG 0.574068 1.1:+74883358 None:intergenic
TTGCTAGCTGATAACACCAT+TGG 0.576690 1.1:-74880868 MS.gene80066:CDS
AACAAAACTGAGAAATGGGC+AGG 0.581483 1.1:-74880490 MS.gene80066:CDS
TAATTTCTGAAGGTGTTAGA+GGG 0.583888 1.1:+74883648 None:intergenic
AATTGCAATTCCAAATGAAG+TGG 0.584112 1.1:-74881373 MS.gene80066:intron
ACTGGATAATCTTCCTGAGA+AGG 0.584969 1.1:+74880219 None:intergenic
TAAGCCTTCTGAGTTACTAG+TGG 0.586124 1.1:-74880659 MS.gene80066:CDS
ACAGCTGCCACACCCTCCAA+TGG 0.586261 1.1:+74883158 None:intergenic
GTCATGCCTACGTTGAGTGG+TGG 0.588484 1.1:-74880198 MS.gene80066:CDS
TGTGGCAGATAACTGAGGTC+AGG 0.588686 1.1:-74881270 MS.gene80066:intron
CCAAGCTTGATGCTACCACT+TGG 0.590234 1.1:+74881172 None:intergenic
GGACCTGGTTTCACCATCCA+AGG 0.591002 1.1:-74882987 MS.gene80066:CDS
TATTGTATTATGGCACACAA+TGG 0.591427 1.1:-74880256 MS.gene80066:CDS
ATATTCACCACAATCAAAGT+AGG 0.591448 1.1:+74881563 None:intergenic
AAGCAGAATAGTATGCGTCT+AGG 0.592646 1.1:+74881478 None:intergenic
TTAGGATTCGACATTCAAGT+TGG 0.594138 1.1:-74881714 MS.gene80066:CDS
AATCACCAAAGCCTATGCAT+TGG 0.596584 1.1:-74880122 MS.gene80066:CDS
GTGAAAGCACCTCTAATCTG+TGG 0.599693 1.1:+74880541 None:intergenic
TGCGTCTAGGAAGACAGCAT+TGG 0.603158 1.1:+74881491 None:intergenic
TGAAAGATCAAACAATACCT+AGG 0.603738 1.1:-74880750 MS.gene80066:CDS
TGAGGATTATGTTACGGACA+AGG 0.606056 1.1:+74883624 None:intergenic
GATTGGGAGTTTAAGCCAAG+TGG 0.613885 1.1:-74881187 MS.gene80066:CDS
ATCTCAACAAAACTCTACAA+AGG 0.617196 1.1:-74883401 MS.gene80066:CDS
CAATTGAGCCTGGAAGCAAA+CGG 0.617474 1.1:+74880593 None:intergenic
TGGCTTCACCATCAATGTCA+AGG 0.618777 1.1:+74880809 None:intergenic
CGTAGTGAAAAGTGAGGTTG+TGG 0.618977 1.1:+74883582 None:intergenic
TGACCTTGGATGGTGAAACC+AGG 0.621250 1.1:+74882984 None:intergenic
TTGGCAGGACAATCTGTGAA+AGG 0.622053 1.1:+74881510 None:intergenic
AAGTGGTAGCATCAAGCTTG+GGG 0.623421 1.1:-74881170 MS.gene80066:intron
GCATACTATTCTGCTTCAGA+TGG 0.624085 1.1:-74881471 MS.gene80066:CDS
ACTGATGCAAGAGTCAACAT+TGG 0.624674 1.1:-74880685 MS.gene80066:CDS
TGGAGTTACATAAGAGCATG+AGG 0.626969 1.1:+74883702 None:intergenic
CCTGACGGAGTGACCTTGGA+TGG 0.627284 1.1:+74882974 None:intergenic
TTGTATGCAAGACCATTGGA+GGG 0.628719 1.1:-74883170 MS.gene80066:CDS
GAAGGTGTTAGAGGGTCAAG+TGG 0.633794 1.1:+74883656 None:intergenic
TTAAGCTTTGGACCAAACGG+TGG 0.635575 1.1:+74883035 None:intergenic
ATGACAAAGGCTTGACGAGG+TGG 0.637143 1.1:+74883482 None:intergenic
TTTACCACTAGTAACTCAGA+AGG 0.641809 1.1:+74880655 None:intergenic
TTCCAGTGCCAAAAGCTGAA+GGG 0.644894 1.1:-74883085 MS.gene80066:CDS
GTATATTAGGGATTAAGGCA+GGG 0.645710 1.1:-74880936 MS.gene80066:CDS
AGTGAGATCGGTTTCAACTG+TGG 0.648718 1.1:-74881230 MS.gene80066:CDS
GTAAGTCAACATGATGGACC+TGG 0.649655 1.1:-74883002 MS.gene80066:CDS
GAATGGTAACTGTGATGCAA+TGG 0.650927 1.1:+74883343 None:intergenic
TACCGTGAAGTACTATACAA+AGG 0.653255 1.1:-74881645 MS.gene80066:CDS
AAAACTGAGAAATGGGCAGG+AGG 0.656721 1.1:-74880487 MS.gene80066:CDS
ACAAAACTCTACAAAGGACA+AGG 0.665601 1.1:-74883395 MS.gene80066:CDS
TTATATGTTGATCATAGCAG+AGG 0.670339 1.1:-74880463 MS.gene80066:CDS
AAGGTGTTAGAGGGTCAAGT+GGG 0.671650 1.1:+74883657 None:intergenic
ATGGTCATGATAGACACCAA+TGG 0.677878 1.1:+74880852 None:intergenic
ATATCTGTAAGTCAACATGA+TGG 0.685391 1.1:-74883008 MS.gene80066:CDS
ACTATGACAAAGGCTTGACG+AGG 0.716443 1.1:+74883479 None:intergenic
TCAAATCCACCACTCAACGT+AGG 0.724526 1.1:+74880192 None:intergenic
ATCCTACGTAGTGAAAAGTG+AGG 0.731935 1.1:+74883576 None:intergenic
AGTATGCTGGTGATATCATG+TGG 0.737902 1.1:-74881407 MS.gene80066:CDS
TTGTGTGTGGCAGATAACTG+AGG 0.795071 1.1:-74881275 MS.gene80066:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATTAAGAATTGAAA+AGG + chr1.1:74881660-74881679 None:intergenic 10.0%
!! ATTCAAATTATAAAATGATA+TGG + chr1.1:74881570-74881589 None:intergenic 10.0%
!!! AAGTCTTTATAATTTTTTTT+TGG - chr1.1:74881389-74881408 MS.gene80066:CDS 10.0%
!! TAATGCATAATATTAGTATA+AGG + chr1.1:74881231-74881250 None:intergenic 15.0%
!! TAGAAAAACACATTATTAAT+GGG + chr1.1:74881882-74881901 None:intergenic 15.0%
!! TTAGAAAAACACATTATTAA+TGG + chr1.1:74881883-74881902 None:intergenic 15.0%
!!! ATTCAAACTATGTTTTTTTA+AGG + chr1.1:74881316-74881335 None:intergenic 15.0%
!!! GTTTTTAAATTCAATATTAC+TGG + chr1.1:74881700-74881719 None:intergenic 15.0%
!! AAAAATATTAGTATAAGGTC+TGG - chr1.1:74881134-74881153 MS.gene80066:intron 20.0%
!! AACAACTAATTACAAACTTA+TGG + chr1.1:74882822-74882841 None:intergenic 20.0%
!! ACTATGATTATGTTATAGAT+TGG - chr1.1:74882625-74882644 MS.gene80066:intron 20.0%
!! ATATATAAATTAGCGACTAA+TGG - chr1.1:74880943-74880962 MS.gene80066:CDS 20.0%
!! CCTAATAAAAAAACAAAACA+AGG - chr1.1:74883198-74883217 MS.gene80066:CDS 20.0%
!! CTATGATTATGTTATAGATT+GGG - chr1.1:74882626-74882645 MS.gene80066:intron 20.0%
!! GCACAAAAAATATTAGTATA+AGG - chr1.1:74881129-74881148 MS.gene80066:intron 20.0%
!! TAAAAAACTACAATGATTGA+TGG - chr1.1:74881968-74881987 MS.gene80066:intron 20.0%
!! TAGAAAAACACATTGTTAAT+GGG + chr1.1:74881626-74881645 None:intergenic 20.0%
!! TATATATGGCATAAAACATT+TGG + chr1.1:74882699-74882718 None:intergenic 20.0%
!! TTAGAAAAACACATTGTTAA+TGG + chr1.1:74881627-74881646 None:intergenic 20.0%
!! TTCATTCATATTAGATATGT+TGG + chr1.1:74882017-74882036 None:intergenic 20.0%
!! TTTCACTAATTATAATGTGT+GGG - chr1.1:74883305-74883324 MS.gene80066:CDS 20.0%
!!! CCTTGTTTTGTTTTTTTATT+AGG + chr1.1:74883201-74883220 None:intergenic 20.0%
!!! GCTATATTTTAAAATAGGTT+GGG - chr1.1:74882863-74882882 MS.gene80066:intron 20.0%
!!! TGCATGCTATATTTTAAAAT+AGG - chr1.1:74882858-74882877 MS.gene80066:intron 20.0%
!!! TGCTATATTTTAAAATAGGT+TGG - chr1.1:74882862-74882881 MS.gene80066:intron 20.0%
!!! TTTGTTTCTTTAATCAAACT+TGG - chr1.1:74882741-74882760 MS.gene80066:intron 20.0%
!!! TTTTAAAACTGTTATACTGT+TGG - chr1.1:74881439-74881458 MS.gene80066:CDS 20.0%
! AAAAACTACAATGATTCTGA+TGG - chr1.1:74881714-74881733 MS.gene80066:CDS 25.0%
! AAAGAAATTACCACTTCATT+TGG + chr1.1:74882469-74882488 None:intergenic 25.0%
! ACAAAACAAGGAAATCAAAT+TGG - chr1.1:74883210-74883229 MS.gene80066:CDS 25.0%
! AGAACAAGGATATTGTATTA+TGG - chr1.1:74883563-74883582 MS.gene80066:CDS 25.0%
! ATACAACAAAACTGAGAAAT+GGG - chr1.1:74883335-74883354 MS.gene80066:CDS 25.0%
! ATATAGTCATGCTTGAAATT+TGG - chr1.1:74882714-74882733 MS.gene80066:intron 25.0%
! ATGAATTGAATTGAATGTGT+AGG - chr1.1:74883527-74883546 MS.gene80066:CDS 25.0%
! ATGATTTGAGGATTATGTTA+CGG + chr1.1:74880214-74880233 None:intergenic 25.0%
! ATTGATGCTAAAGAAACTAT+TGG + chr1.1:74882142-74882161 None:intergenic 25.0%
! ATTTCAAGCATGACTATATA+TGG + chr1.1:74882713-74882732 None:intergenic 25.0%
! CAAAACAAGGAAATCAAATT+GGG - chr1.1:74883211-74883230 MS.gene80066:CDS 25.0%
! CAAAATTGTTAGGATGAAAT+TGG + chr1.1:74880910-74880929 None:intergenic 25.0%
! CAAGATAATAGGTAAAGAAA+TGG + chr1.1:74882999-74883018 None:intergenic 25.0%
! CATAATATTAGTATAAGGTC+TGG + chr1.1:74881226-74881245 None:intergenic 25.0%
! CTTTCACTAATTATAATGTG+TGG - chr1.1:74883304-74883323 MS.gene80066:CDS 25.0%
! GTTAGAATGCAAGAAAAAAA+TGG + chr1.1:74881808-74881827 None:intergenic 25.0%
! TAATCATCATTTACCAAAAG+TGG + chr1.1:74883267-74883286 None:intergenic 25.0%
! TGAATTGAATTGAATGTGTA+GGG - chr1.1:74883528-74883547 MS.gene80066:CDS 25.0%
! TGTTAATTAAGAGTTTGAAG+AGG + chr1.1:74881916-74881935 None:intergenic 25.0%
! TTCTTCAACGAATGTTTAAA+CGG + chr1.1:74880521-74880540 None:intergenic 25.0%
!! AAACACATTATTAATGGGTA+TGG + chr1.1:74881877-74881896 None:intergenic 25.0%
!! AAAGCATTAGATATCTTAAC+AGG + chr1.1:74882388-74882407 None:intergenic 25.0%
!! ACAATTTTCTTTGATCAGTT+GGG - chr1.1:74882075-74882094 MS.gene80066:intron 25.0%
!! GTGAGAAATTGTTAATGTTT+TGG - chr1.1:74883500-74883519 MS.gene80066:CDS 25.0%
!!! AATCAGACAACATTTTTTTG+TGG - chr1.1:74881183-74881202 MS.gene80066:CDS 25.0%
!!! AATGTTGTCTGATTTTTTTG+TGG + chr1.1:74881177-74881196 None:intergenic 25.0%
!!! TATCTTATTTTTGTGCTAAG+CGG + chr1.1:74881505-74881524 None:intergenic 25.0%
!!! TTCTTTGATTTGATCTGTAT+TGG + chr1.1:74882926-74882945 None:intergenic 25.0%
!!! TTTTTAAGGAACTTCAAACT+AGG + chr1.1:74881302-74881321 None:intergenic 25.0%
AAAACAATTCCTCGAAATCA+TGG - chr1.1:74880382-74880401 MS.gene80066:intron 30.0%
AAATACTACATGCGTAATAG+TGG - chr1.1:74881781-74881800 MS.gene80066:intron 30.0%
AAGTTATTGGACTGTTGTAA+AGG - chr1.1:74883104-74883123 MS.gene80066:CDS 30.0%
AATACTACATGCGTAATAGT+GGG - chr1.1:74881782-74881801 MS.gene80066:intron 30.0%
AATGTCAAGGTCAAGATAAT+AGG + chr1.1:74883010-74883029 None:intergenic 30.0%
AATTGCAATTCCAAATGAAG+TGG - chr1.1:74882456-74882475 MS.gene80066:intron 30.0%
ATATCTGTAAGTCAACATGA+TGG - chr1.1:74880821-74880840 MS.gene80066:CDS 30.0%
ATATTCACCACAATCAAAGT+AGG + chr1.1:74882269-74882288 None:intergenic 30.0%
ATCCTTTGTATAGTACTTCA+CGG + chr1.1:74882189-74882208 None:intergenic 30.0%
ATCTCAACAAAACTCTACAA+AGG - chr1.1:74880428-74880447 MS.gene80066:intron 30.0%
ATTGTATTATGGCACACAAT+GGG - chr1.1:74883574-74883593 MS.gene80066:CDS 30.0%
CAAATCAAAGAAGACATTCA+TGG - chr1.1:74882934-74882953 MS.gene80066:intron 30.0%
CAATACCTAGGAAAAGTTAT+TGG - chr1.1:74883091-74883110 MS.gene80066:CDS 30.0%
CATACAACAAAACTGAGAAA+TGG - chr1.1:74883334-74883353 MS.gene80066:CDS 30.0%
CTTGATGAAATGAGAATTCT+TGG - chr1.1:74880701-74880720 MS.gene80066:CDS 30.0%
TACTGGTATATTAGGGATTA+AGG - chr1.1:74882888-74882907 MS.gene80066:intron 30.0%
TACTTTGATTGTGGTGAATA+TGG - chr1.1:74882268-74882287 MS.gene80066:intron 30.0%
TATTGTATTATGGCACACAA+TGG - chr1.1:74883573-74883592 MS.gene80066:CDS 30.0%
TGAAAGATCAAACAATACCT+AGG - chr1.1:74883079-74883098 MS.gene80066:CDS 30.0%
TGAGCAAAGCCAAAATTTAA+TGG + chr1.1:74883428-74883447 None:intergenic 30.0%
TGTAAGCTTAATAGTGAGAT+CGG - chr1.1:74882587-74882606 MS.gene80066:intron 30.0%
TGTAATACCATTCTTCACTT+GGG + chr1.1:74882243-74882262 None:intergenic 30.0%
TGTGATGCAACAAAATTGTT+AGG + chr1.1:74880920-74880939 None:intergenic 30.0%
TTATATGTTGATCATAGCAG+AGG - chr1.1:74883366-74883385 MS.gene80066:CDS 30.0%
TTTACAAGACTATTACCTGA+CGG + chr1.1:74880873-74880892 None:intergenic 30.0%
! AAGGTGAGTCCATTAAATTT+TGG - chr1.1:74883416-74883435 MS.gene80066:CDS 30.0%
! GACAATTTTCTTTGATCAGT+TGG - chr1.1:74882074-74882093 MS.gene80066:intron 30.0%
! GATCCTTCAAAATTTTCTTG+CGG + chr1.1:74881065-74881084 None:intergenic 30.0%
! GTATTTTCAAATATCAGCTG+TGG + chr1.1:74881767-74881786 None:intergenic 30.0%
! GTGAAGTGTTATTACAAGAA+TGG - chr1.1:74880626-74880645 MS.gene80066:CDS 30.0%
! TAATGTTGAAAAGTGCAGTT+GGG + chr1.1:74883733-74883752 None:intergenic 30.0%
! TAATTTGTATGCAAGACCAT+TGG - chr1.1:74880655-74880674 MS.gene80066:CDS 30.0%
! TGATTTCGAGGAATTGTTTT+TGG + chr1.1:74880382-74880401 None:intergenic 30.0%
! TTATGACTATTGATTGTGTG+TGG - chr1.1:74882541-74882560 MS.gene80066:intron 30.0%
!! TAATTTCTGAAGGTGTTAGA+GGG + chr1.1:74880184-74880203 None:intergenic 30.0%
!! TTAATTTCTGAAGGTGTTAG+AGG + chr1.1:74880185-74880204 None:intergenic 30.0%
!!! AACATTTTTTTGTGGTGATC+GGG - chr1.1:74881191-74881210 MS.gene80066:CDS 30.0%
!!! CAACATTTTTTTGTGGTGAT+CGG - chr1.1:74881190-74881209 MS.gene80066:CDS 30.0%
!!! CATTTCTCAGTTTTGTTGTA+TGG + chr1.1:74883336-74883355 None:intergenic 30.0%
!!! GGTGATTTTGTTTTAAGAAC+AGG + chr1.1:74883694-74883713 None:intergenic 30.0%
!!! GTAGAGTTTTGTTGAGATTA+TGG + chr1.1:74880426-74880445 None:intergenic 30.0%
!!! TCTGATTTTTTTGTGGTGAA+CGG + chr1.1:74881170-74881189 None:intergenic 30.0%
!!! TGTTTTATGTGCTGCTTTTA+CGG - chr1.1:74880562-74880581 MS.gene80066:CDS 30.0%
AAAAGTCTACCATGATTTCG+AGG + chr1.1:74880394-74880413 None:intergenic 35.0%
ACAAAACTCTACAAAGGACA+AGG - chr1.1:74880434-74880453 MS.gene80066:CDS 35.0%
ACAGATATGCCTTTAAGCTT+TGG + chr1.1:74880809-74880828 None:intergenic 35.0%
AGGAATATGACTGCATTCTA+TGG + chr1.1:74880150-74880169 None:intergenic 35.0%
AGGATTCCTCTCAAAGAAAT+TGG + chr1.1:74883674-74883693 None:intergenic 35.0%
ATTTCATCATGTTCCTTCTC+AGG - chr1.1:74883597-74883616 MS.gene80066:CDS 35.0%
ATTTGTCTTGACAAAGGAGT+TGG + chr1.1:74883043-74883062 None:intergenic 35.0%
CGAATGTTTAAACGGTTCAT+AGG + chr1.1:74880513-74880532 None:intergenic 35.0%
CTCCAAATTTGTCTTGACAA+AGG + chr1.1:74883049-74883068 None:intergenic 35.0%
CTCCTTTGTCAAGACAAATT+TGG - chr1.1:74883044-74883063 MS.gene80066:CDS 35.0%
CTTGAATGTCGAATCCTAAA+TGG + chr1.1:74882114-74882133 None:intergenic 35.0%
GAATTGAATGTGTAGGGATA+GGG - chr1.1:74883534-74883553 MS.gene80066:CDS 35.0%
GATGATTATCCACAGATTAG+AGG - chr1.1:74883279-74883298 MS.gene80066:CDS 35.0%
GTATATTAGGGATTAAGGCA+GGG - chr1.1:74882893-74882912 MS.gene80066:intron 35.0%
GTGATGATACTTTAGCAGTT+TGG - chr1.1:74883388-74883407 MS.gene80066:CDS 35.0%
GTGTAATACCATTCTTCACT+TGG + chr1.1:74882244-74882263 None:intergenic 35.0%
TACACAACCTACTTTGATTG+TGG - chr1.1:74882259-74882278 MS.gene80066:intron 35.0%
TATCTTGACCTTGACATTGA+TGG - chr1.1:74883012-74883031 MS.gene80066:CDS 35.0%
TCCTAAATGGAAAACCCAAT+TGG + chr1.1:74882101-74882120 None:intergenic 35.0%
TGAATTGAATGTGTAGGGAT+AGG - chr1.1:74883533-74883552 MS.gene80066:CDS 35.0%
TTAAACGGTTCATAGGTGAA+TGG + chr1.1:74880506-74880525 None:intergenic 35.0%
TTAGGATTCGACATTCAAGT+TGG - chr1.1:74882115-74882134 MS.gene80066:intron 35.0%
TTCCTCTCAAAGAAATTGGT+TGG + chr1.1:74883670-74883689 None:intergenic 35.0%
TTGGAACCTTACTATGACAA+AGG + chr1.1:74880363-74880382 None:intergenic 35.0%
TTGGACTGTTGTAAAGGAAA+CGG - chr1.1:74883110-74883129 MS.gene80066:CDS 35.0%
TTGGGCTTACTGGTATATTA+GGG - chr1.1:74882881-74882900 MS.gene80066:intron 35.0%
TTGTCCTCGTAAGCTTAATT+CGG + chr1.1:74881264-74881283 None:intergenic 35.0%
TTTACCACTAGTAACTCAGA+AGG + chr1.1:74883177-74883196 None:intergenic 35.0%
TTTCAAATATCAGCTGTGGT+TGG + chr1.1:74881763-74881782 None:intergenic 35.0%
! AAACACATTGTTAATGGGTC+AGG + chr1.1:74881621-74881640 None:intergenic 35.0%
! AACACATTGTTAATGGGTCA+GGG + chr1.1:74881620-74881639 None:intergenic 35.0%
! ACAGTCCAATAACTTTTCCT+AGG + chr1.1:74883099-74883118 None:intergenic 35.0%
! CTAATGTTGAAAAGTGCAGT+TGG + chr1.1:74883734-74883753 None:intergenic 35.0%
! TACCGTGAAGTACTATACAA+AGG - chr1.1:74882184-74882203 MS.gene80066:intron 35.0%
! TTAAAATAGGTTGGGCTTAC+TGG - chr1.1:74882871-74882890 MS.gene80066:intron 35.0%
!! GTTTGGTTTGGTATGATTTG+AGG + chr1.1:74880226-74880245 None:intergenic 35.0%
!! TGCATTTTTGAGAAGTATGC+TGG - chr1.1:74882409-74882428 MS.gene80066:intron 35.0%
!!! AAGAGTTTTGGTTTTGGTGT+TGG + chr1.1:74880321-74880340 None:intergenic 35.0%
!!! ACATTTTTTTGTGGTGATCG+GGG - chr1.1:74881192-74881211 MS.gene80066:CDS 35.0%
!!! CTGATTTTTTTGTGGTGAAC+GGG + chr1.1:74881169-74881188 None:intergenic 35.0%
!!! TGATTTTTTTGTGGTGAACG+GGG + chr1.1:74881168-74881187 None:intergenic 35.0%
AAAAGTGAGGTTGTGGTGTT+TGG + chr1.1:74880243-74880262 None:intergenic 40.0%
AACAAAACTGAGAAATGGGC+AGG - chr1.1:74883339-74883358 MS.gene80066:CDS 40.0%
AAGCAGAATAGTATGCGTCT+AGG + chr1.1:74882354-74882373 None:intergenic 40.0%
AATCACCAAAGCCTATGCAT+TGG - chr1.1:74883707-74883726 MS.gene80066:CDS 40.0%
ACAAACCTCTCATCCAATCA+TGG - chr1.1:74880288-74880307 MS.gene80066:intron 40.0%
ACTGATGCAAGAGTCAACAT+TGG - chr1.1:74883144-74883163 MS.gene80066:CDS 40.0%
ACTGGATAATCTTCCTGAGA+AGG + chr1.1:74883613-74883632 None:intergenic 40.0%
AGTATGCTGGTGATATCATG+TGG - chr1.1:74882422-74882441 MS.gene80066:intron 40.0%
ATCCTACGTAGTGAAAAGTG+AGG + chr1.1:74880256-74880275 None:intergenic 40.0%
ATGGTCATGATAGACACCAA+TGG + chr1.1:74882980-74882999 None:intergenic 40.0%
CGGACAAGGTTAATTTCTGA+AGG + chr1.1:74880194-74880213 None:intergenic 40.0%
GAATGGTAACTGTGATGCAA+TGG + chr1.1:74880489-74880508 None:intergenic 40.0%
GACCAACCAATTTCTTTGAG+AGG - chr1.1:74883665-74883684 MS.gene80066:CDS 40.0%
GATTGTGGTGAATATGGCTT+TGG - chr1.1:74882274-74882293 MS.gene80066:intron 40.0%
GCATACTATTCTGCTTCAGA+TGG - chr1.1:74882358-74882377 MS.gene80066:intron 40.0%
GGTATATTAGGGATTAAGGC+AGG - chr1.1:74882892-74882911 MS.gene80066:intron 40.0%
GTCAAGCCTTTGTCATAGTA+AGG - chr1.1:74880354-74880373 MS.gene80066:intron 40.0%
GTTCACCAAAGGTAAGGATA+GGG + chr1.1:74880463-74880482 None:intergenic 40.0%
GTTGGGCTTACTGGTATATT+AGG - chr1.1:74882880-74882899 MS.gene80066:intron 40.0%
TAAGCCTTCTGAGTTACTAG+TGG - chr1.1:74883170-74883189 MS.gene80066:CDS 40.0%
TGAGGATTATGTTACGGACA+AGG + chr1.1:74880208-74880227 None:intergenic 40.0%
TGATTGGATGAGAGGTTTGT+CGG + chr1.1:74880288-74880307 None:intergenic 40.0%
TGTTCACCAAAGGTAAGGAT+AGG + chr1.1:74880464-74880483 None:intergenic 40.0%
TTGCTAGCTGATAACACCAT+TGG - chr1.1:74882961-74882980 MS.gene80066:intron 40.0%
TTGTATGCAAGACCATTGGA+GGG - chr1.1:74880659-74880678 MS.gene80066:CDS 40.0%
TTTGATCAGTTGGGCCAATT+GGG - chr1.1:74882084-74882103 MS.gene80066:intron 40.0%
TTTGTATGCAAGACCATTGG+AGG - chr1.1:74880658-74880677 MS.gene80066:CDS 40.0%
! ACATAAGAGCATGAGGAGAA+AGG + chr1.1:74880123-74880142 None:intergenic 40.0%
! CTCAATTGTGCATCCACTTT+TGG - chr1.1:74883251-74883270 MS.gene80066:CDS 40.0%
! CTTTAGCAGTTTGGAGTCTA+AGG - chr1.1:74883397-74883416 MS.gene80066:CDS 40.0%
! GAGCCGCAAGAAAATTTTGA+AGG - chr1.1:74881059-74881078 MS.gene80066:intron 40.0%
! GCCAATTGGGTTTTCCATTT+AGG - chr1.1:74882097-74882116 MS.gene80066:intron 40.0%
! TGGAGTTACATAAGAGCATG+AGG + chr1.1:74880130-74880149 None:intergenic 40.0%
!! AACCTCACTTTTCACTACGT+AGG - chr1.1:74880251-74880270 MS.gene80066:CDS 40.0%
!! CCTTTAAGCTTTGGACCAAA+CGG + chr1.1:74880800-74880819 None:intergenic 40.0%
!! TGCAATGGTTTGTTCACCAA+AGG + chr1.1:74880474-74880493 None:intergenic 40.0%
!! TGGTTTGTTCACCAAAGGTA+AGG + chr1.1:74880469-74880488 None:intergenic 40.0%
!!! AGTTTTGGTTTTGGTGTTGG+AGG + chr1.1:74880318-74880337 None:intergenic 40.0%
!!! TGGAGGAAGAGTTTTGGTTT+TGG + chr1.1:74880327-74880346 None:intergenic 40.0%
!!! TTATGTGCTGCTTTTACGGT+AGG - chr1.1:74880566-74880585 MS.gene80066:CDS 40.0%
AAAACTGAGAAATGGGCAGG+AGG - chr1.1:74883342-74883361 MS.gene80066:CDS 45.0%
AAGTGGTAGCATCAAGCTTG+GGG - chr1.1:74882659-74882678 MS.gene80066:intron 45.0%
ACCAAGACCCAAGTGAAGAA+TGG - chr1.1:74882233-74882252 MS.gene80066:intron 45.0%
ACCATTCTTCACTTGGGTCT+TGG + chr1.1:74882237-74882256 None:intergenic 45.0%
ACTATGACAAAGGCTTGACG+AGG + chr1.1:74880353-74880372 None:intergenic 45.0%
ATTCCAGTGCCAAAAGCTGA+AGG - chr1.1:74880743-74880762 MS.gene80066:CDS 45.0%
CAAGTGGTAGCATCAAGCTT+GGG - chr1.1:74882658-74882677 MS.gene80066:intron 45.0%
CAATTGAGCCTGGAAGCAAA+CGG + chr1.1:74883239-74883258 None:intergenic 45.0%
CCGTTTGGTCCAAAGCTTAA+AGG - chr1.1:74880797-74880816 MS.gene80066:CDS 45.0%
CGTAGTGAAAAGTGAGGTTG+TGG + chr1.1:74880250-74880269 None:intergenic 45.0%
CTTTGATCAGTTGGGCCAAT+TGG - chr1.1:74882083-74882102 MS.gene80066:intron 45.0%
GATAGCCATGATTGGATGAG+AGG + chr1.1:74880296-74880315 None:intergenic 45.0%
GATTGGATGAGAGGTTTGTC+GGG + chr1.1:74880287-74880306 None:intergenic 45.0%
GATTGGGAGTTTAAGCCAAG+TGG - chr1.1:74882642-74882661 MS.gene80066:intron 45.0%
GGATAGGGAGATTGAGAACA+AGG - chr1.1:74883549-74883568 MS.gene80066:CDS 45.0%
TCAAATCCACCACTCAACGT+AGG + chr1.1:74883640-74883659 None:intergenic 45.0%
TCAGCCGAATTAAGCTTACG+AGG - chr1.1:74881257-74881276 MS.gene80066:CDS 45.0%
TCTTCACTTGGGTCTTGGTA+TGG + chr1.1:74882232-74882251 None:intergenic 45.0%
TGAGGTTGTGGTGTTTGGTT+TGG + chr1.1:74880238-74880257 None:intergenic 45.0%
TGGCTTCACCATCAATGTCA+AGG + chr1.1:74883023-74883042 None:intergenic 45.0%
TGTTGGAGGATAGCCATGAT+TGG + chr1.1:74880304-74880323 None:intergenic 45.0%
TTCCAGTGCCAAAAGCTGAA+GGG - chr1.1:74880744-74880763 MS.gene80066:CDS 45.0%
TTGGCAGGACAATCTGTGAA+AGG + chr1.1:74882322-74882341 None:intergenic 45.0%
TTGTGTGTGGCAGATAACTG+AGG - chr1.1:74882554-74882573 MS.gene80066:intron 45.0%
! AAGGTGTTAGAGGGTCAAGT+GGG + chr1.1:74880175-74880194 None:intergenic 45.0%
! AGTGAGATCGGTTTCAACTG+TGG - chr1.1:74882599-74882618 MS.gene80066:intron 45.0%
! GTGAGATCGGTTTCAACTGT+GGG - chr1.1:74882600-74882619 MS.gene80066:intron 45.0%
! TACTCAGTCCCTTCAGCTTT+TGG + chr1.1:74880755-74880774 None:intergenic 45.0%
! TCTAAGATGAAGCCACCGTT+TGG - chr1.1:74880782-74880801 MS.gene80066:CDS 45.0%
!! GTAAGTCAACATGATGGACC+TGG - chr1.1:74880827-74880846 MS.gene80066:CDS 45.0%
!! GTGAAAGCACCTCTAATCTG+TGG + chr1.1:74883291-74883310 None:intergenic 45.0%
!! TTAAGCTTTGGACCAAACGG+TGG + chr1.1:74880797-74880816 None:intergenic 45.0%
!!! GCTTTTACGGTAGGTTGGTT+TGG - chr1.1:74880575-74880594 MS.gene80066:CDS 45.0%
AGTGGATGCACAATTGAGCC+TGG + chr1.1:74883249-74883268 None:intergenic 50.0%
ATGACAAAGGCTTGACGAGG+TGG + chr1.1:74880350-74880369 None:intergenic 50.0%
ATTACCTGACGGAGTGACCT+TGG + chr1.1:74880862-74880881 None:intergenic 50.0%
CCAAGCTTGATGCTACCACT+TGG + chr1.1:74882660-74882679 None:intergenic 50.0%
CCAAGTGGTAGCATCAAGCT+TGG - chr1.1:74882657-74882676 MS.gene80066:intron 50.0%
GGCTACCCTATCCTTACCTT+TGG - chr1.1:74880455-74880474 MS.gene80066:CDS 50.0%
GTAGCATCAAGCTTGGGGTA+TGG - chr1.1:74882664-74882683 MS.gene80066:intron 50.0%
TGACCTTGGATGGTGAAACC+AGG + chr1.1:74880848-74880867 None:intergenic 50.0%
TGCGTCTAGGAAGACAGCAT+TGG + chr1.1:74882341-74882360 None:intergenic 50.0%
TGTGGCAGATAACTGAGGTC+AGG - chr1.1:74882559-74882578 MS.gene80066:intron 50.0%
TTGGGCCAATGCATAGGCTT+TGG + chr1.1:74883715-74883734 None:intergenic 50.0%
! ATTGGGTACCGTTTGCTTCC+AGG - chr1.1:74883228-74883247 MS.gene80066:CDS 50.0%
!! GAAGGTGTTAGAGGGTCAAG+TGG + chr1.1:74880176-74880195 None:intergenic 50.0%
!! TACGGTAGGTTGGTTTGGAG+AGG - chr1.1:74880580-74880599 MS.gene80066:CDS 50.0%
!! TCTAGGAAGACAGCATTGGC+AGG + chr1.1:74882337-74882356 None:intergenic 50.0%
!!! AGGTGGTGGAGGAAGAGTTT+TGG + chr1.1:74880333-74880352 None:intergenic 50.0%
!!! GTGCTGCTTTTACGGTAGGT+TGG - chr1.1:74880570-74880589 MS.gene80066:CDS 50.0%
ACAAAGGCTTGACGAGGTGG+TGG + chr1.1:74880347-74880366 None:intergenic 55.0%
CCACTCAACGTAGGCATGAC+TGG + chr1.1:74883631-74883650 None:intergenic 55.0%
CCAGTCATGCCTACGTTGAG+TGG - chr1.1:74883628-74883647 MS.gene80066:CDS 55.0%
GGACCTGGTTTCACCATCCA+AGG - chr1.1:74880842-74880861 MS.gene80066:CDS 55.0%
GTCATGCCTACGTTGAGTGG+TGG - chr1.1:74883631-74883650 MS.gene80066:CDS 55.0%
GTGCAGTTGGGCCAATGCAT+AGG + chr1.1:74883721-74883740 None:intergenic 55.0%
GTTAGAGGGTCAAGTGGGTG+AGG + chr1.1:74880170-74880189 None:intergenic 55.0%
TGCAAGACCATTGGAGGGTG+TGG - chr1.1:74880664-74880683 MS.gene80066:CDS 55.0%
! GTCCCTTCAGCTTTTGGCAC+TGG + chr1.1:74880749-74880768 None:intergenic 55.0%
ACAGCTGCCACACCCTCCAA+TGG + chr1.1:74880674-74880693 None:intergenic 60.0%
CCATCCAAGGTCACTCCGTC+AGG - chr1.1:74880855-74880874 MS.gene80066:CDS 60.0%
CCTGACGGAGTGACCTTGGA+TGG + chr1.1:74880858-74880877 None:intergenic 60.0%
! AAGGCTTGACGAGGTGGTGG+AGG + chr1.1:74880344-74880363 None:intergenic 60.0%
! ATTGGAGGGTGTGGCAGCTG+TGG - chr1.1:74880673-74880692 MS.gene80066:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 74880098 74883753 74880098 ID=MS.gene80066
chr1.1 mRNA 74880098 74883753 74880098 ID=MS.gene80066.t1;Parent=MS.gene80066
chr1.1 exon 74882975 74883753 74882975 ID=MS.gene80066.t1.exon1;Parent=MS.gene80066.t1
chr1.1 CDS 74882975 74883753 74882975 ID=cds.MS.gene80066.t1;Parent=MS.gene80066.t1
chr1.1 exon 74881374 74881758 74881374 ID=MS.gene80066.t1.exon2;Parent=MS.gene80066.t1
chr1.1 CDS 74881374 74881758 74881374 ID=cds.MS.gene80066.t1;Parent=MS.gene80066.t1
chr1.1 exon 74881171 74881284 74881171 ID=MS.gene80066.t1.exon3;Parent=MS.gene80066.t1
chr1.1 CDS 74881171 74881284 74881171 ID=cds.MS.gene80066.t1;Parent=MS.gene80066.t1
chr1.1 exon 74880433 74880971 74880433 ID=MS.gene80066.t1.exon4;Parent=MS.gene80066.t1
chr1.1 CDS 74880433 74880971 74880433 ID=cds.MS.gene80066.t1;Parent=MS.gene80066.t1
chr1.1 exon 74880098 74880302 74880098 ID=MS.gene80066.t1.exon5;Parent=MS.gene80066.t1
chr1.1 CDS 74880098 74880302 74880098 ID=cds.MS.gene80066.t1;Parent=MS.gene80066.t1
Gene Sequence

>MS.gene80066

ATGAAGATGAAGTTGATATTCTCCTTTCTCCTCATGCTCTTATGTAACTCCATAGAATGCAGTCATATTCCTCACCCACTTGACCCTCTAACACCTTCAGAAATTAACCTTGTCCGTAACATAATCCTCAAATCATACCAAACCAAACACCACAACCTCACTTTTCACTACGTAGGATTGCAAGAACCCGACAAACCTCTCATCCAATCATGGCTATCCTCCAACACCAAAACCAAAACTCTTCCTCCACCACCTCGTCAAGCCTTTGTCATAGTAAGGTTCCAAAAACAATTCCTCGAAATCATGGTAGACTTTTCAACTCGTTCCATAATCTCAACAAAACTCTACAAAGGACAAGGCTACCCTATCCTTACCTTTGGTGAACAAACCATTGCATCACAGTTACCATTCACCTATGAACCGTTTAAACATTCGTTGAAGAAAAGAAATATTAACATATCTAATGTTTTATGTGCTGCTTTTACGGTAGGTTGGTTTGGAGAGGAAAAGAGTAAAAGAACAGTGAAAGTGAAGTGTTATTACAAGAATGGTTCTGCTAATTTGTATGCAAGACCATTGGAGGGTGTGGCAGCTGTGGTTGATCTTGATGAAATGAGAATTCTTGGTTATTCTGATAGACATGTGATTCCAGTGCCAAAAGCTGAAGGGACTGAGTATCGAGCTTCTAAGATGAAGCCACCGTTTGGTCCAAAGCTTAAAGGCATATCTGTAAGTCAACATGATGGACCTGGTTTCACCATCCAAGGTCACTCCGTCAGGTAATAGTCTTGTAAAATTTAGACTAAAAGCCAATTTCATCCTAACAATTTTGTTGCATCACATTAATATATAAATTAGCGACTAATGGCAAAAATTATTTCATATGTTAATTTTGATCGACTAATTTGTTTCTATATAAAAATATTAAGAGATTAACTCTAGTATTAATTTTATTAGAATTGAGCCGCAAGAAAATTTTGAAGGATCAAATTGAATATTTAGTAAAACAAAAATAAATCTGTTTAACATTAGCACAAAAAATATTAGTATAAGGTCTGGAGTTCAAACCCCGTTCACCACAAAAAAATCAGACAACATTTTTTTGTGGTGATCGGGGTTTGAACTCCAGACCTTATACTAATATTATGCATTATCTCTATCAGCCGAATTAAGCTTACGAGGACAAGATTAGCGTATTTAACCTAGTTTGAAGTTCCTTAAAAAAACATAGTTTGAATTTTTAAATAAGTCTTTATAATTTTTAAAAAAAACATAGTTTGAATTTTTAAATAAGTCTTTATAATTTTTTTTTGGTGTCAAATTAATCATTAGTCATTTACATTTTAAAACTGTTATACTGTTGGATCAACTGTTATTCTTAGATATATTATAAATGATATTTTACCGCTTAGCACAAAAATAAGATATAATTTAGTTAAAAAAACTATGCATGTTTTGCAAGTTTTATACCATATCATTTTATAATTTGAATAAAAACATTGAGTATTTTTGTCTTATACCCTGACCCATTAACAATGTGTTTTTCTAACGTGTTATTTCCTTTTCAATTCTTAATTAATATTTTTTGATCAATAATAGCCAGTAATATTGAATTTAAAAACTACAATGATTCTGATGGTTGAAAAGTCTTTCTATCAAATTCCAACCACAGCTGATATTTGAAAATACTACATGCGTAATAGTGGGCCATTTTTTTCTTGCATTCTAACTAAACATATCATCTGAAAAAAGAAAATATATGCTTTGATTGTTATACCATACCCATTAATAATGTGTTTTTCTAACGTACTATTTCCTCTTCAAACTCTTAATTAACATGAGAGATATTTTTTTTTTATTAATATTGAATTAAAAAACTACAATGATTGATGGTTGAAAAGTCTTTCTATCAAATTCCAACATATCTAATATGAATGAAGAAAAGTTACGATCTAGATAAAAAGAAAATTGACAGTGACAATTTTCTTTGATCAGTTGGGCCAATTGGGTTTTCCATTTAGGATTCGACATTCAAGTTGGTCCAATAGTTTCTTTAGCATCAATTTATGATCTAGAAAATCAGAAATACCGTGAAGTACTATACAAAGGATTCATATCAGAAGTGTTTGTACCATACCAAGACCCAAGTGAAGAATGGTATTACACAACCTACTTTGATTGTGGTGAATATGGCTTTGGACAGACTATGTCTTCATTACAACCTTTCACAGATTGTCCTGCCAATGCTGTCTTCCTAGACGCATACTATTCTGCTTCAGATGGTACTCCTGTTAAGATATCTAATGCTTTTTGCATTTTTGAGAAGTATGCTGGTGATATCATGTGGCGTCACACAGAAATTGCAATTCCAAATGAAGTGGTAATTTCTTTGTTTTTTTTTTTACTTTTTTTCAACTTAGTTTGAATTATTGTTTCATTTTTTTTATGACTATTGATTGTGTGTGGCAGATAACTGAGGTCAGGTCAGATGTAAGCTTAATAGTGAGATCGGTTTCAACTGTGGGAAACTATGATTATGTTATAGATTGGGAGTTTAAGCCAAGTGGTAGCATCAAGCTTGGGGTATGGATTTATATACCAAATGTTTTATGCCATATATAGTCATGCTTGAAATTTGGATCATTTGTTTCTTTAATCAAACTTGGATTGCATAGTTATTTTTGTTCATCAAATTGTAAAGAAACAATAACTAATAATTTACCATAAGTTTGTAATTAGTTGTTGTTATATGAAGCTAATTGCATGCTATATTTTAAAATAGGTTGGGCTTACTGGTATATTAGGGATTAAGGCAGGGACATATACCAATACAGATCAAATCAAAGAAGACATTCATGGCACATTGCTAGCTGATAACACCATTGGTGTCTATCATGACCATTTCTTTACCTATTATCTTGACCTTGACATTGATGGTGAAGCCAACTCCTTTGTCAAGACAAATTTGGAGACTGTAAGAGTGAAAGATCAAACAATACCTAGGAAAAGTTATTGGACTGTTGTAAAGGAAACGGCTAAAACAGAAACTGATGCAAGAGTCAACATTGGTTTTAAGCCTTCTGAGTTACTAGTGGTAAATCCTAATAAAAAAACAAAACAAGGAAATCAAATTGGGTACCGTTTGCTTCCAGGCTCAATTGTGCATCCACTTTTGGTAAATGATGATTATCCACAGATTAGAGGTGCTTTCACTAATTATAATGTGTGGGTCACACCATACAACAAAACTGAGAAATGGGCAGGAGGATTATATGTTGATCATAGCAGAGGTGATGATACTTTAGCAGTTTGGAGTCTAAGGTGAGTCCATTAAATTTTGGCTTTGCTCATTCTCATTTACGTACTCTTTGTAAGTTGTAATATTGTGCATAAAAAACAAGTGTGAGAAATTGTTAATGTTTTGGTATCATGAATTGAATTGAATGTGTAGGGATAGGGAGATTGAGAACAAGGATATTGTATTATGGCACACAATGGGATTTCATCATGTTCCTTCTCAGGAAGATTATCCAGTCATGCCTACGTTGAGTGGTGGATTTGAGCTTAGACCAACCAATTTCTTTGAGAGGAATCCTGTTCTTAAAACAAAATCACCAAAGCCTATGCATTGGCCCAACTGCACTTTTCAACATTAG
Protein sequence

>MS.gene80066.t1

MKMKLIFSFLLMLLCNSIECSHIPHPLDPLTPSEINLVRNIILKSYQTKHHNLTFHYVGLQEPDKPLIQSWLSSNTKTKTLPPPPRQAFVIVRFQKQFLEIMVDFSTRSIISTKLYKGQGYPILTFGEQTIASQLPFTYEPFKHSLKKRNINISNVLCAAFTVGWFGEEKSKRTVKVKCYYKNGSANLYARPLEGVAAVVDLDEMRILGYSDRHVIPVPKAEGTEYRASKMKPPFGPKLKGISVSQHDGPGFTIQGHSVSWANWVFHLGFDIQVGPIVSLASIYDLENQKYREVLYKGFISEVFVPYQDPSEEWYYTTYFDCGEYGFGQTMSSLQPFTDCPANAVFLDAYYSASDGTPVKISNAFCIFEKYAGDIMWRHTEIAIPNEVITEVRSDVSLIVRSVSTVGNYDYVIDWEFKPSGSIKLGVGLTGILGIKAGTYTNTDQIKEDIHGTLLADNTIGVYHDHFFTYYLDLDIDGEANSFVKTNLETVRVKDQTIPRKSYWTVVKETAKTETDARVNIGFKPSELLVVNPNKKTKQGNQIGYRLLPGSIVHPLLVNDDYPQIRGAFTNYNVWVTPYNKTEKWAGGLYVDHSRGDDTLAVWSLRDREIENKDIVLWHTMGFHHVPSQEDYPVMPTLSGGFELRPTNFFERNPVLKTKSPKPMHWPNCTFQH