Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006934.t1 | XP_013456813.1 | 98.6 | 280 | 4 | 0 | 1 | 280 | 1 | 280 | 9.80E-159 | 569.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006934.t1 | Q9ZVF6 | 75.2 | 278 | 68 | 1 | 2 | 279 | 5 | 281 | 2.7e-125 | 449.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006934.t1 | A0A072UM45 | 98.6 | 280 | 4 | 0 | 1 | 280 | 1 | 280 | 7.0e-159 | 569.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01565 | MS.gene006934 | PPI |
| MS.gene002583 | MS.gene006934 | PPI |
| MS.gene004252 | MS.gene006934 | PPI |
| MS.gene54295 | MS.gene006934 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006934.t1 | MTR_4g084560 | 98.571 | 280 | 4 | 0 | 1 | 280 | 1 | 280 | 0.0 | 578 |
| MS.gene006934.t1 | MTR_4g084560 | 94.792 | 288 | 5 | 2 | 1 | 280 | 1 | 286 | 0.0 | 560 |
| MS.gene006934.t1 | MTR_4g084560 | 95.000 | 280 | 4 | 1 | 1 | 280 | 1 | 270 | 0.0 | 549 |
| MS.gene006934.t1 | MTR_4g084560 | 98.496 | 266 | 4 | 0 | 1 | 266 | 1 | 266 | 0.0 | 547 |
| MS.gene006934.t1 | MTR_4g084560 | 98.394 | 249 | 4 | 0 | 32 | 280 | 1 | 249 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006934.t1 | AT2G01490 | 75.180 | 278 | 68 | 1 | 2 | 279 | 5 | 281 | 5.23e-158 | 441 |
| MS.gene006934.t1 | AT2G01490 | 75.180 | 278 | 68 | 1 | 2 | 279 | 5 | 281 | 5.23e-158 | 441 |
Find 68 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGCCACCATATTAAA+TGG | 0.254138 | 4.3:+27471698 | MS.gene006934:CDS |
| TCTTCTTCTGAGAAGGCTTC+AGG | 0.276208 | 4.3:+27470585 | MS.gene006934:CDS |
| GCAGTCCATGTATATATTTA+AGG | 0.276974 | 4.3:+27470647 | MS.gene006934:CDS |
| CCAAAGGCAACCATTTAATA+TGG | 0.291161 | 4.3:-27471708 | None:intergenic |
| TAGTTTACATAGAGTGGTTC+TGG | 0.296838 | 4.3:-27472897 | None:intergenic |
| GGTTGCCTTTGGGCAATTCC+TGG | 0.303363 | 4.3:+27471719 | MS.gene006934:CDS |
| CCATATTAAATGGTTGCCTT+TGG | 0.320118 | 4.3:+27471708 | MS.gene006934:CDS |
| GCAAATGGGCAGCAGAAAAT+TGG | 0.320664 | 4.3:+27472183 | MS.gene006934:CDS |
| TACATGGACTGCATGATTAC+TGG | 0.333257 | 4.3:-27470636 | None:intergenic |
| TGAAGTTAAAGCCGGGTCTT+TGG | 0.346038 | 4.3:+27471954 | MS.gene006934:CDS |
| CATATTAAATGGTTGCCTTT+GGG | 0.356536 | 4.3:+27471709 | MS.gene006934:CDS |
| TTATTGTTAGAGAAAGCATT+TGG | 0.358097 | 4.3:+27469990 | MS.gene006934:intron |
| TCAGGTTTGATGAGCTCCTT+AGG | 0.378116 | 4.3:+27470603 | MS.gene006934:CDS |
| AAAGATTTCCTTCTTCTTTG+AGG | 0.389116 | 4.3:+27469878 | MS.gene006934:CDS |
| TATTGTTAGAGAAAGCATTT+GGG | 0.389370 | 4.3:+27469991 | MS.gene006934:intron |
| TTATTGAGGGAAAGTTCCTT+TGG | 0.396538 | 4.3:-27470035 | None:intergenic |
| CACAGCCCTGTGCATGTTTG+TGG | 0.396548 | 4.3:-27471665 | None:intergenic |
| ATTGACAGCAACCTGGCATC+GGG | 0.398754 | 4.3:+27471597 | MS.gene006934:intron |
| GAGAAAGCATTTGGGGATGA+TGG | 0.415329 | 4.3:+27469999 | MS.gene006934:intron |
| GACCCGGCTTTAACTTCAAT+AGG | 0.423086 | 4.3:-27471949 | None:intergenic |
| TTGGTTACCTTGAGAGTTGA+AGG | 0.437086 | 4.3:-27469526 | None:intergenic |
| AAGATTTCCTTCTTCTTTGA+GGG | 0.437800 | 4.3:+27469879 | MS.gene006934:CDS |
| CCCTGTGCATGTTTGTGGTT+CGG | 0.455033 | 4.3:-27471660 | None:intergenic |
| TAGATACTGTTGGCTGCAAA+TGG | 0.458033 | 4.3:+27472168 | MS.gene006934:CDS |
| GATAGTTAGTTTACATAGAG+TGG | 0.460224 | 4.3:-27472903 | None:intergenic |
| TATAAATAAACGAGTTATCC+TGG | 0.469410 | 4.3:-27471637 | None:intergenic |
| GGGTCTTTGGTTGTCATCCA+TGG | 0.470343 | 4.3:+27471967 | MS.gene006934:CDS |
| ATGAATACCCTCAAAGAAGA+AGG | 0.472672 | 4.3:-27469886 | None:intergenic |
| GAACTTTCCCTCAATAAAGT+TGG | 0.479271 | 4.3:+27470041 | MS.gene006934:CDS |
| TACCATGGCCAACTTTATTG+AGG | 0.480797 | 4.3:-27470049 | None:intergenic |
| GAAGAAAACTTCTTGAATGC+AGG | 0.483645 | 4.3:-27470567 | None:intergenic |
| TTTCAGGATCAGACGGAAAG+TGG | 0.483932 | 4.3:+27472872 | MS.gene006934:intron |
| ACCATGGCCAACTTTATTGA+GGG | 0.484932 | 4.3:-27470048 | None:intergenic |
| AAAATAGAGGCGGTGGAAGA+AGG | 0.486490 | 4.3:-27469708 | None:intergenic |
| TTGAAGGATTCAAGCTGATC+CGG | 0.488379 | 4.3:-27469510 | None:intergenic |
| TATTGACAGCAACCTGGCAT+CGG | 0.490867 | 4.3:+27471596 | MS.gene006934:intron |
| GTTCCTATTGAAGTTAAAGC+CGG | 0.491121 | 4.3:+27471946 | MS.gene006934:CDS |
| ACCGAACCACAAACATGCAC+AGG | 0.509362 | 4.3:+27471659 | MS.gene006934:CDS |
| TACTGGTCTCTTGTAACCTA+AGG | 0.518263 | 4.3:-27470619 | None:intergenic |
| GGTGGAGAAAATAGAGGCGG+TGG | 0.519274 | 4.3:-27469715 | None:intergenic |
| AACATGCACAGGGCTGTGGC+TGG | 0.521401 | 4.3:+27471670 | MS.gene006934:CDS |
| CACGATGGGTTTGCTTACAC+CGG | 0.549691 | 4.3:+27469491 | None:intergenic |
| CTTGAATCCTTCAACTCTCA+AGG | 0.549943 | 4.3:+27469519 | MS.gene006934:CDS |
| ATGTACCTTAAATATATACA+TGG | 0.552780 | 4.3:-27470652 | None:intergenic |
| GATAAAGAGGATGGAGCAGT+TGG | 0.552962 | 4.3:+27469671 | MS.gene006934:CDS |
| AAATTGATAGCATGATAAAG+AGG | 0.555437 | 4.3:+27469658 | MS.gene006934:CDS |
| CACAAACATGCACAGGGCTG+TGG | 0.556191 | 4.3:+27471666 | MS.gene006934:CDS |
| TCCCTCAATAAAGTTGGCCA+TGG | 0.556630 | 4.3:+27470047 | MS.gene006934:CDS |
| TGATAGCATGATAAAGAGGA+TGG | 0.560483 | 4.3:+27469662 | MS.gene006934:CDS |
| GGGTGAAGTAGTGCCTCACC+AGG | 0.563698 | 4.3:+27471619 | MS.gene006934:CDS |
| TTCCTATTGAAGTTAAAGCC+GGG | 0.573559 | 4.3:+27471947 | MS.gene006934:CDS |
| TGACAGCAACCTGGCATCGG+GGG | 0.589195 | 4.3:+27471599 | MS.gene006934:intron |
| AGATTCTTCAGAGATGAAGA+TGG | 0.593662 | 4.3:+27471877 | MS.gene006934:CDS |
| ATGGCAATCTTATCCACCAA+AGG | 0.607737 | 4.3:+27471986 | MS.gene006934:CDS |
| AAGATGGTGTCAAATTTGAT+CGG | 0.610693 | 4.3:+27471893 | MS.gene006934:CDS |
| AGATACTGTTGGCTGCAAAT+GGG | 0.618414 | 4.3:+27472169 | MS.gene006934:CDS |
| AAGGCAACCATTTAATATGG+TGG | 0.618923 | 4.3:-27471705 | None:intergenic |
| TTGCACGTGGTAGATACTGT+TGG | 0.622851 | 4.3:+27472158 | MS.gene006934:CDS |
| TTTGGTGGATAAGATTGCCA+TGG | 0.624104 | 4.3:-27471984 | None:intergenic |
| CCGAACCACAAACATGCACA+GGG | 0.624383 | 4.3:+27471660 | MS.gene006934:CDS |
| ATGGATGACAACCAAAGACC+CGG | 0.637824 | 4.3:-27471965 | None:intergenic |
| TGGTAACTTAAAGCAGCCAA+AGG | 0.650430 | 4.3:+27470019 | MS.gene006934:CDS |
| ATTGTTAGAGAAAGCATTTG+GGG | 0.650933 | 4.3:+27469992 | MS.gene006934:intron |
| TTGACAGCAACCTGGCATCG+GGG | 0.657122 | 4.3:+27471598 | MS.gene006934:intron |
| TTTGGTGGAGAAAATAGAGG+CGG | 0.659579 | 4.3:-27469718 | None:intergenic |
| ATAAACGAGTTATCCTGGTG+AGG | 0.674544 | 4.3:-27471632 | None:intergenic |
| GAGATCCAGGAATTGCCCAA+AGG | 0.691404 | 4.3:-27471724 | None:intergenic |
| ACATGCATACAGCTTGCACG+TGG | 0.710583 | 4.3:+27472145 | MS.gene006934:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTCATATAAAAAAAAT+GGG | - | chr4.3:27471220-27471239 | None:intergenic | 10.0% |
| !! | TTATCTTCATATAAAAAAAA+TGG | - | chr4.3:27471221-27471240 | None:intergenic | 10.0% |
| !! | AAACTTAAATAATGAAAAGT+AGG | - | chr4.3:27469784-27469803 | None:intergenic | 15.0% |
| !! | ATATTATGTGTATTTGAATT+AGG | + | chr4.3:27470086-27470105 | MS.gene006934:intron | 15.0% |
| !! | CATTAAAGAAAATTATATGA+AGG | - | chr4.3:27472581-27472600 | None:intergenic | 15.0% |
| !! | TCAAATACACATAATATTAA+AGG | - | chr4.3:27470083-27470102 | None:intergenic | 15.0% |
| !!! | AGATATGTTAAAGTTTTATA+TGG | + | chr4.3:27472348-27472367 | MS.gene006934:intron | 15.0% |
| !!! | CTTCATATAATTTTCTTTAA+TGG | + | chr4.3:27472579-27472598 | MS.gene006934:intron | 15.0% |
| !!! | GATATAATCTAGAAATATTT+TGG | + | chr4.3:27471150-27471169 | MS.gene006934:intron | 15.0% |
| !!! | TCAATAAAAATTTTGTAATC+TGG | - | chr4.3:27471582-27471601 | None:intergenic | 15.0% |
| !!! | TCATAAAAAATCAATCTTTT+TGG | + | chr4.3:27469905-27469924 | MS.gene006934:intron | 15.0% |
| !!! | TGCATTATTTTTTAGTTTTA+TGG | + | chr4.3:27472604-27472623 | MS.gene006934:intron | 15.0% |
| !! | ATGTACCTTAAATATATACA+TGG | - | chr4.3:27470655-27470674 | None:intergenic | 20.0% |
| !!! | AAATCTTTTTGATCATAAGA+TGG | - | chr4.3:27471925-27471944 | None:intergenic | 20.0% |
| !!! | AAGTTAAGAATGAATTTTGA+AGG | - | chr4.3:27472077-27472096 | None:intergenic | 20.0% |
| !!! | AATCTAGAAATATTTTGGAT+TGG | + | chr4.3:27471155-27471174 | MS.gene006934:intron | 20.0% |
| !!! | ATTCTATCAATTTTCATTTC+AGG | + | chr4.3:27472856-27472875 | MS.gene006934:intron | 20.0% |
| !!! | CTATTTTTCTTAGTTTGTAT+TGG | + | chr4.3:27470409-27470428 | MS.gene006934:intron | 20.0% |
| !!! | TTATCTTCTGTTTTATTGTA+TGG | + | chr4.3:27471831-27471850 | MS.gene006934:intron | 20.0% |
| ! | AAAGATATATATCACAGACA+TGG | + | chr4.3:27471470-27471489 | MS.gene006934:intron | 25.0% |
| ! | AAAGTTTCCATGTATTAAAC+CGG | - | chr4.3:27470977-27470996 | None:intergenic | 25.0% |
| ! | AAGTAATTAAGTAACTAACC+TGG | - | chr4.3:27469746-27469765 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGGAGATAAA+GGG | - | chr4.3:27469774-27469793 | None:intergenic | 25.0% |
| ! | AGTTATTGTAACCATGAATT+CGG | - | chr4.3:27470705-27470724 | None:intergenic | 25.0% |
| ! | CTTCATATAAAAAAAATGGG+CGG | - | chr4.3:27471217-27471236 | None:intergenic | 25.0% |
| ! | TAAAGTAAGGATACATTATC+AGG | - | chr4.3:27472031-27472050 | None:intergenic | 25.0% |
| ! | TAATGAAAAGTAGGAGATAA+AGG | - | chr4.3:27469775-27469794 | None:intergenic | 25.0% |
| ! | TATAAATAAACGAGTTATCC+TGG | - | chr4.3:27471640-27471659 | None:intergenic | 25.0% |
| ! | TATATGGCCATATAAAACTA+AGG | + | chr4.3:27472364-27472383 | MS.gene006934:intron | 25.0% |
| !! | AAATTGATAGCATGATAAAG+AGG | + | chr4.3:27469658-27469677 | MS.gene006934:CDS | 25.0% |
| !! | GTTTAATACATGGAAACTTT+TGG | + | chr4.3:27470977-27470996 | MS.gene006934:intron | 25.0% |
| !! | TTGAATCTAACTTTTCCTTT+TGG | + | chr4.3:27470496-27470515 | MS.gene006934:intron | 25.0% |
| !!! | ACTTAATTTGTTCTCTGATT+GGG | + | chr4.3:27470848-27470867 | MS.gene006934:intron | 25.0% |
| !!! | AGATTCTCCTTAGTTTTATA+TGG | - | chr4.3:27472374-27472393 | None:intergenic | 25.0% |
| !!! | CAATGTTGTTTTTGTTTTTC+TGG | + | chr4.3:27470782-27470801 | MS.gene006934:intron | 25.0% |
| !!! | CTTTTAAAATTGCCATATGA+TGG | + | chr4.3:27471512-27471531 | MS.gene006934:intron | 25.0% |
| !!! | GAATTATTTTAGCAAACCTT+TGG | - | chr4.3:27472005-27472024 | None:intergenic | 25.0% |
| !!! | TACTTAATTTGTTCTCTGAT+TGG | + | chr4.3:27470847-27470866 | MS.gene006934:intron | 25.0% |
| !!! | TAGTTTGTATTGGTTTGTTT+GGG | + | chr4.3:27470419-27470438 | MS.gene006934:intron | 25.0% |
| !!! | TATTGAATCGTTTTCTAGTA+AGG | + | chr4.3:27469632-27469651 | MS.gene006934:CDS | 25.0% |
| !!! | TATTGTTAGAGAAAGCATTT+GGG | + | chr4.3:27469991-27470010 | MS.gene006934:intron | 25.0% |
| !!! | TCTTTAATTTGCAATCAAAC+TGG | + | chr4.3:27470913-27470932 | MS.gene006934:intron | 25.0% |
| !!! | TTAGTTTGTATTGGTTTGTT+TGG | + | chr4.3:27470418-27470437 | MS.gene006934:intron | 25.0% |
| !!! | TTATTGTTAGAGAAAGCATT+TGG | + | chr4.3:27469990-27470009 | MS.gene006934:intron | 25.0% |
| AAAGATTTCCTTCTTCTTTG+AGG | + | chr4.3:27469878-27469897 | MS.gene006934:CDS | 30.0% | |
| AAGATTTCCTTCTTCTTTGA+GGG | + | chr4.3:27469879-27469898 | MS.gene006934:CDS | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | + | chr4.3:27470253-27470272 | MS.gene006934:intron | 30.0% | |
| ACACATAATATTAAAGGCAG+AGG | - | chr4.3:27470077-27470096 | None:intergenic | 30.0% | |
| ATATGATCAGAGAAGTGAAA+GGG | - | chr4.3:27469557-27469576 | None:intergenic | 30.0% | |
| CATATTAAATGGTTGCCTTT+GGG | + | chr4.3:27471709-27471728 | MS.gene006934:CDS | 30.0% | |
| CATTGATGCATGATTGTAAA+AGG | - | chr4.3:27471266-27471285 | None:intergenic | 30.0% | |
| GCAGTCCATGTATATATTTA+AGG | + | chr4.3:27470647-27470666 | MS.gene006934:CDS | 30.0% | |
| GTTTGGATTGACTAATTTGA+GGG | - | chr4.3:27470345-27470364 | None:intergenic | 30.0% | |
| TAACAACATATATGCCACTA+AGG | - | chr4.3:27471037-27471056 | None:intergenic | 30.0% | |
| TAAGGAGAATCTTGTCTTAA+GGG | + | chr4.3:27472382-27472401 | MS.gene006934:intron | 30.0% | |
| TACTAAGATACTCCATCATA+TGG | - | chr4.3:27471527-27471546 | None:intergenic | 30.0% | |
| TACTTTATAGCATAGAAGGA+AGG | + | chr4.3:27472044-27472063 | MS.gene006934:intron | 30.0% | |
| TAGTGTTCCTTAAATCATGA+TGG | + | chr4.3:27472647-27472666 | MS.gene006934:intron | 30.0% | |
| TATATGATCAGAGAAGTGAA+AGG | - | chr4.3:27469558-27469577 | None:intergenic | 30.0% | |
| TCCTTACTTTATAGCATAGA+AGG | + | chr4.3:27472040-27472059 | MS.gene006934:intron | 30.0% | |
| TCCTTCTATGCTATAAAGTA+AGG | - | chr4.3:27472044-27472063 | None:intergenic | 30.0% | |
| TGTTTGGATTGACTAATTTG+AGG | - | chr4.3:27470346-27470365 | None:intergenic | 30.0% | |
| TTTCCAAAATAGCACTAGTT+TGG | + | chr4.3:27472743-27472762 | MS.gene006934:intron | 30.0% | |
| ! | AACTAGTCTGTATAATCTGA+TGG | + | chr4.3:27471120-27471139 | MS.gene006934:intron | 30.0% |
| ! | AAGAAGACAAGATTTTGGAT+AGG | + | chr4.3:27472420-27472439 | MS.gene006934:intron | 30.0% |
| ! | AAGATGGTGTCAAATTTGAT+CGG | + | chr4.3:27471893-27471912 | MS.gene006934:CDS | 30.0% |
| ! | AATCTAACTTTTCCTTTTGG+TGG | + | chr4.3:27470499-27470518 | MS.gene006934:intron | 30.0% |
| ! | AATTTTTATTGACAGCAACC+TGG | + | chr4.3:27471590-27471609 | MS.gene006934:intron | 30.0% |
| ! | ATTTTCATTTCAGGATCAGA+CGG | + | chr4.3:27472865-27472884 | MS.gene006934:intron | 30.0% |
| ! | CGTTTTCCTAAACAAACTAA+GGG | - | chr4.3:27470370-27470389 | None:intergenic | 30.0% |
| ! | CTGTATACTTTTCTGATTGA+TGG | + | chr4.3:27471376-27471395 | MS.gene006934:intron | 30.0% |
| ! | GTAACGTTTTTCTTTCTTTC+TGG | + | chr4.3:27471753-27471772 | MS.gene006934:intron | 30.0% |
| ! | GTATGAAGAAGACAAGATTT+TGG | + | chr4.3:27472415-27472434 | MS.gene006934:intron | 30.0% |
| ! | GTTATTTCAACATTGCAGTT+TGG | + | chr4.3:27471177-27471196 | MS.gene006934:intron | 30.0% |
| ! | TATTTGAATTAGGCTCTGAT+TGG | + | chr4.3:27470096-27470115 | MS.gene006934:intron | 30.0% |
| ! | TCTGGTTATGATAATGATCA+CGG | - | chr4.3:27471564-27471583 | None:intergenic | 30.0% |
| ! | TTTTGATCATAAGATGGTGA+TGG | - | chr4.3:27471919-27471938 | None:intergenic | 30.0% |
| !! | AATTAAAGAAGTATCCACAC+AGG | - | chr4.3:27470902-27470921 | None:intergenic | 30.0% |
| !! | ATTGTTAGAGAAAGCATTTG+GGG | + | chr4.3:27469992-27470011 | MS.gene006934:intron | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | + | chr4.3:27470242-27470261 | MS.gene006934:intron | 30.0% |
| !! | TAAGTAACTAACCTGGTTTT+TGG | - | chr4.3:27469739-27469758 | None:intergenic | 30.0% |
| !! | TATTATGCCGGTTTAATACA+TGG | + | chr4.3:27470967-27470986 | MS.gene006934:intron | 30.0% |
| !! | TATTGGTTTGTTTGGGATTT+GGG | + | chr4.3:27470426-27470445 | MS.gene006934:intron | 30.0% |
| !! | TTTCTGGTTTATTTGTTACC+TGG | + | chr4.3:27471769-27471788 | MS.gene006934:intron | 30.0% |
| !!! | GTTGTTTTTGTTTTTCTGGA+GGG | + | chr4.3:27470786-27470805 | MS.gene006934:intron | 30.0% |
| !!! | TATCCAAACTAGTGCTATTT+TGG | - | chr4.3:27472749-27472768 | None:intergenic | 30.0% |
| !!! | TCTTAACTTTTTTTCCTGTG+TGG | + | chr4.3:27472088-27472107 | MS.gene006934:intron | 30.0% |
| !!! | TGTTGTTTTTGTTTTTCTGG+AGG | + | chr4.3:27470785-27470804 | MS.gene006934:intron | 30.0% |
| !!! | TTATTTTAGCAAACCTTTGG+TGG | - | chr4.3:27472002-27472021 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTTATACGAACG+AGG | + | chr4.3:27472680-27472699 | MS.gene006934:intron | 30.0% |
| !!! | TTGTTTTTGTTTTTCTGGAG+GGG | + | chr4.3:27470787-27470806 | MS.gene006934:intron | 30.0% |
| AAGAAATTCAAGCAAGGCAT+AGG | - | chr4.3:27472533-27472552 | None:intergenic | 35.0% | |
| AAGGAGAATCTTGTCTTAAG+GGG | + | chr4.3:27472383-27472402 | MS.gene006934:intron | 35.0% | |
| AAGGCAACCATTTAATATGG+TGG | - | chr4.3:27471708-27471727 | None:intergenic | 35.0% | |
| AATCTTGTCTTAAGGGGTTA+GGG | + | chr4.3:27472389-27472408 | MS.gene006934:intron | 35.0% | |
| AATTGGTGAGTTTGGATCAT+AGG | + | chr4.3:27472200-27472219 | MS.gene006934:intron | 35.0% | |
| AGATTCTTCAGAGATGAAGA+TGG | + | chr4.3:27471877-27471896 | MS.gene006934:CDS | 35.0% | |
| AGTCGAAGTTCAAATAATCC+AGG | - | chr4.3:27471790-27471809 | None:intergenic | 35.0% | |
| ATGAAGGCAGAGAACTAAAT+TGG | - | chr4.3:27472565-27472584 | None:intergenic | 35.0% | |
| ATGAATACCCTCAAAGAAGA+AGG | - | chr4.3:27469889-27469908 | None:intergenic | 35.0% | |
| ATTCAATCATATGCATGCAC+AGG | + | chr4.3:27469600-27469619 | MS.gene006934:intron | 35.0% | |
| ATTGGTGAGTTTGGATCATA+GGG | + | chr4.3:27472201-27472220 | MS.gene006934:intron | 35.0% | |
| ATTGTATGGTTGTTGCAGAT+GGG | + | chr4.3:27471845-27471864 | MS.gene006934:intron | 35.0% | |
| CAAAGCAACTTTCATTAAGC+TGG | - | chr4.3:27471100-27471119 | None:intergenic | 35.0% | |
| CCAAAGGCAACCATTTAATA+TGG | - | chr4.3:27471711-27471730 | None:intergenic | 35.0% | |
| CCATATTAAATGGTTGCCTT+TGG | + | chr4.3:27471708-27471727 | MS.gene006934:CDS | 35.0% | |
| CTAAGGAGAATCTTGTCTTA+AGG | + | chr4.3:27472381-27472400 | MS.gene006934:intron | 35.0% | |
| GAACTTTCCCTCAATAAAGT+TGG | + | chr4.3:27470041-27470060 | MS.gene006934:CDS | 35.0% | |
| GAAGAAAACTTCTTGAATGC+AGG | - | chr4.3:27470570-27470589 | None:intergenic | 35.0% | |
| GAAGATGCCACCATATTAAA+TGG | + | chr4.3:27471698-27471717 | MS.gene006934:CDS | 35.0% | |
| GTATACAGCAATACTAGCTA+CGG | - | chr4.3:27471364-27471383 | None:intergenic | 35.0% | |
| GTATCCAAGAAATTCAAGCA+AGG | - | chr4.3:27472539-27472558 | None:intergenic | 35.0% | |
| GTTCCTATTGAAGTTAAAGC+CGG | + | chr4.3:27471946-27471965 | MS.gene006934:CDS | 35.0% | |
| TAAACAAACTAAGGGCTGTT+TGG | - | chr4.3:27470362-27470381 | None:intergenic | 35.0% | |
| TAAATCATGATGGCTGCAAA+AGG | + | chr4.3:27472657-27472676 | MS.gene006934:intron | 35.0% | |
| TAAGGAACACTATGAACTGA+TGG | - | chr4.3:27472639-27472658 | None:intergenic | 35.0% | |
| TACATGTCCATAAACTTTCC+AGG | - | chr4.3:27470263-27470282 | None:intergenic | 35.0% | |
| TAGTTTACATAGAGTGGTTC+TGG | - | chr4.3:27472900-27472919 | None:intergenic | 35.0% | |
| TATGCCTTGCTTGAATTTCT+TGG | + | chr4.3:27472532-27472551 | MS.gene006934:intron | 35.0% | |
| TATTGCATTCCAGTCAAAAC+AGG | - | chr4.3:27471314-27471333 | None:intergenic | 35.0% | |
| TATTGTATGGTTGTTGCAGA+TGG | + | chr4.3:27471844-27471863 | MS.gene006934:intron | 35.0% | |
| TGATAGCATGATAAAGAGGA+TGG | + | chr4.3:27469662-27469681 | MS.gene006934:CDS | 35.0% | |
| TGTGCATGCATATGATTGAA+TGG | - | chr4.3:27469601-27469620 | None:intergenic | 35.0% | |
| TTATTGAGGGAAAGTTCCTT+TGG | - | chr4.3:27470038-27470057 | None:intergenic | 35.0% | |
| TTCCTATTGAAGTTAAAGCC+GGG | + | chr4.3:27471947-27471966 | MS.gene006934:CDS | 35.0% | |
| TTTGCAGCCATCATGATTTA+AGG | - | chr4.3:27472657-27472676 | None:intergenic | 35.0% | |
| ! | GCGTTTTCCTAAACAAACTA+AGG | - | chr4.3:27470371-27470390 | None:intergenic | 35.0% |
| ! | GGAAAACTGTGTTATTATGC+CGG | + | chr4.3:27470955-27470974 | MS.gene006934:intron | 35.0% |
| ! | GTTTTCAGTTTCCGAATTCA+TGG | + | chr4.3:27470691-27470710 | MS.gene006934:intron | 35.0% |
| ! | TATTTTCTCCACCAAAAACC+AGG | + | chr4.3:27469725-27469744 | MS.gene006934:CDS | 35.0% |
| !! | AAACAGCCCTTAGTTTGTTT+AGG | + | chr4.3:27470361-27470380 | MS.gene006934:intron | 35.0% |
| !! | GAAGTTTTCTTCTTCTGAGA+AGG | + | chr4.3:27470578-27470597 | MS.gene006934:CDS | 35.0% |
| !! | GTATTGGTTTGTTTGGGATT+TGG | + | chr4.3:27470425-27470444 | MS.gene006934:intron | 35.0% |
| !!! | AACTTTTTTTCCTGTGTGGA+TGG | + | chr4.3:27472092-27472111 | MS.gene006934:intron | 35.0% |
| !!! | GTTTTTGGTGGAGAAAATAG+AGG | - | chr4.3:27469724-27469743 | None:intergenic | 35.0% |
| ACCATGGCCAACTTTATTGA+GGG | - | chr4.3:27470051-27470070 | None:intergenic | 40.0% | |
| ATAAACGAGTTATCCTGGTG+AGG | - | chr4.3:27471635-27471654 | None:intergenic | 40.0% | |
| ATGGCAATCTTATCCACCAA+AGG | + | chr4.3:27471986-27472005 | MS.gene006934:CDS | 40.0% | |
| CAGCAGAAAATTGGTGAGTT+TGG | + | chr4.3:27472192-27472211 | MS.gene006934:intron | 40.0% | |
| CTTGAATCCTTCAACTCTCA+AGG | + | chr4.3:27469519-27469538 | MS.gene006934:CDS | 40.0% | |
| GAATCTTGTCTTAAGGGGTT+AGG | + | chr4.3:27472388-27472407 | MS.gene006934:intron | 40.0% | |
| GTGTTAGCAAAAGTCAACCA+AGG | - | chr4.3:27472833-27472852 | None:intergenic | 40.0% | |
| TACCATGGCCAACTTTATTG+AGG | - | chr4.3:27470052-27470071 | None:intergenic | 40.0% | |
| TGGTAACTTAAAGCAGCCAA+AGG | + | chr4.3:27470019-27470038 | MS.gene006934:CDS | 40.0% | |
| TTAGCAAAAGTCAACCAAGG+AGG | - | chr4.3:27472830-27472849 | None:intergenic | 40.0% | |
| TTGAAGGATTCAAGCTGATC+CGG | - | chr4.3:27469513-27469532 | None:intergenic | 40.0% | |
| TTGGTTACCTTGAGAGTTGA+AGG | - | chr4.3:27469529-27469548 | None:intergenic | 40.0% | |
| TTTGGTGGAGAAAATAGAGG+CGG | - | chr4.3:27469721-27469740 | None:intergenic | 40.0% | |
| ! | AGATACTGTTGGCTGCAAAT+GGG | + | chr4.3:27472169-27472188 | MS.gene006934:CDS | 40.0% |
| ! | CATGTCTCGATTTTGTAGAC+TGG | - | chr4.3:27472130-27472149 | None:intergenic | 40.0% |
| ! | TACATGGACTGCATGATTAC+TGG | - | chr4.3:27470639-27470658 | None:intergenic | 40.0% |
| ! | TACTGGTCTCTTGTAACCTA+AGG | - | chr4.3:27470622-27470641 | None:intergenic | 40.0% |
| ! | TAGATACTGTTGGCTGCAAA+TGG | + | chr4.3:27472168-27472187 | MS.gene006934:CDS | 40.0% |
| ! | TTTGGTGGATAAGATTGCCA+TGG | - | chr4.3:27471987-27472006 | None:intergenic | 40.0% |
| !! | AACTTTTCCTTTTGGTGGAC+TGG | + | chr4.3:27470504-27470523 | MS.gene006934:intron | 40.0% |
| !! | GTAACTAACCTGGTTTTTGG+TGG | - | chr4.3:27469736-27469755 | None:intergenic | 40.0% |
| !!! | ACGTTACTTTTGTGAGATCC+AGG | - | chr4.3:27471740-27471759 | None:intergenic | 40.0% |
| !!! | ACTTTTCCTTTTGGTGGACT+GGG | + | chr4.3:27470505-27470524 | MS.gene006934:intron | 40.0% |
| AAAACGCGTGCAAGATAGTG+GGG | + | chr4.3:27470384-27470403 | MS.gene006934:intron | 45.0% | |
| AAAATAGAGGCGGTGGAAGA+AGG | - | chr4.3:27469711-27469730 | None:intergenic | 45.0% | |
| ACCAGGTGAAGTCAACTACA+AGG | - | chr4.3:27472462-27472481 | None:intergenic | 45.0% | |
| ATGGATGACAACCAAAGACC+CGG | - | chr4.3:27471968-27471987 | None:intergenic | 45.0% | |
| CAATCAGTACACTACCTCCT+TGG | + | chr4.3:27472813-27472832 | MS.gene006934:intron | 45.0% | |
| CCAGGTGAAGTCAACTACAA+GGG | - | chr4.3:27472461-27472480 | None:intergenic | 45.0% | |
| GAAAACGCGTGCAAGATAGT+GGG | + | chr4.3:27470383-27470402 | MS.gene006934:intron | 45.0% | |
| GATAAAGAGGATGGAGCAGT+TGG | + | chr4.3:27469671-27469690 | MS.gene006934:CDS | 45.0% | |
| GATCAGAGAAGTGAAAGGGT+TGG | - | chr4.3:27469553-27469572 | None:intergenic | 45.0% | |
| GCAAATGGGCAGCAGAAAAT+TGG | + | chr4.3:27472183-27472202 | MS.gene006934:CDS | 45.0% | |
| GCATTCCAGTCAAAACAGGT+TGG | - | chr4.3:27471310-27471329 | None:intergenic | 45.0% | |
| GGAGAAGGGGTTGTATGATT+TGG | + | chr4.3:27470808-27470827 | MS.gene006934:intron | 45.0% | |
| GGTGTGTGATTGAATCTGCT+TGG | + | chr4.3:27470934-27470953 | MS.gene006934:intron | 45.0% | |
| TATTGACAGCAACCTGGCAT+CGG | + | chr4.3:27471596-27471615 | MS.gene006934:intron | 45.0% | |
| TCAGGTTTGATGAGCTCCTT+AGG | + | chr4.3:27470603-27470622 | MS.gene006934:CDS | 45.0% | |
| TCCACACAGGTAACAGCATT+CGG | - | chr4.3:27470889-27470908 | None:intergenic | 45.0% | |
| TCCCTCAATAAAGTTGGCCA+TGG | + | chr4.3:27470047-27470066 | MS.gene006934:CDS | 45.0% | |
| TGAAGTTAAAGCCGGGTCTT+TGG | + | chr4.3:27471954-27471973 | MS.gene006934:CDS | 45.0% | |
| TTAAAGGCAGAGGCTTACCA+TGG | - | chr4.3:27470067-27470086 | None:intergenic | 45.0% | |
| TTGCACGTGGTAGATACTGT+TGG | + | chr4.3:27472158-27472177 | MS.gene006934:CDS | 45.0% | |
| TTTCAGGATCAGACGGAAAG+TGG | + | chr4.3:27472872-27472891 | MS.gene006934:intron | 45.0% | |
| ! | AACAGTCTCACCAGTGCTTT+TGG | + | chr4.3:27470310-27470329 | MS.gene006934:intron | 45.0% |
| ! | AGACTGTTTGCGAGAGCATA+CGG | - | chr4.3:27470298-27470317 | None:intergenic | 45.0% |
| ! | GACCCGGCTTTAACTTCAAT+AGG | - | chr4.3:27471952-27471971 | None:intergenic | 45.0% |
| ! | GTATCTACTGCCAAAAGCAC+TGG | - | chr4.3:27470323-27470342 | None:intergenic | 45.0% |
| ! | TCTTCTTCTGAGAAGGCTTC+AGG | + | chr4.3:27470585-27470604 | MS.gene006934:CDS | 45.0% |
| ! | TTCCAGTCAAAACAGGTTGG+AGG | - | chr4.3:27471307-27471326 | None:intergenic | 45.0% |
| !! | GAGAAAGCATTTGGGGATGA+TGG | + | chr4.3:27469999-27470018 | MS.gene006934:intron | 45.0% |
| !! | GAGAAGTGAAAGGGTTGGTT+TGG | - | chr4.3:27469548-27469567 | None:intergenic | 45.0% |
| !! | TGTTTTTCTGGAGGGGAGAA+GGG | + | chr4.3:27470794-27470813 | MS.gene006934:intron | 45.0% |
| !! | TTGTTTTTCTGGAGGGGAGA+AGG | + | chr4.3:27470793-27470812 | MS.gene006934:intron | 45.0% |
| ACAGGTAACAGCATTCGGGT+GGG | - | chr4.3:27470884-27470903 | None:intergenic | 50.0% | |
| ACATGCATACAGCTTGCACG+TGG | + | chr4.3:27472145-27472164 | MS.gene006934:CDS | 50.0% | |
| ACCGAACCACAAACATGCAC+AGG | + | chr4.3:27471659-27471678 | MS.gene006934:CDS | 50.0% | |
| AGCACAAGTCTTTCCTCACC+AGG | - | chr4.3:27472479-27472498 | None:intergenic | 50.0% | |
| ATTGACAGCAACCTGGCATC+GGG | + | chr4.3:27471597-27471616 | MS.gene006934:intron | 50.0% | |
| CACAATCCCAGTCCACCAAA+AGG | - | chr4.3:27470514-27470533 | None:intergenic | 50.0% | |
| CCACACAGGTAACAGCATTC+GGG | - | chr4.3:27470888-27470907 | None:intergenic | 50.0% | |
| CCACTAAGGATGAACGACAC+AGG | - | chr4.3:27471023-27471042 | None:intergenic | 50.0% | |
| CCCTGTGCATGTTTGTGGTT+CGG | - | chr4.3:27471663-27471682 | None:intergenic | 50.0% | |
| CCGAACCACAAACATGCACA+GGG | + | chr4.3:27471660-27471679 | MS.gene006934:CDS | 50.0% | |
| GAGATCCAGGAATTGCCCAA+AGG | - | chr4.3:27471727-27471746 | None:intergenic | 50.0% | |
| GGAAAACGCGTGCAAGATAG+TGG | + | chr4.3:27470382-27470401 | MS.gene006934:intron | 50.0% | |
| GGGTCTTTGGTTGTCATCCA+TGG | + | chr4.3:27471967-27471986 | MS.gene006934:CDS | 50.0% | |
| TTCAAAGCTGCCATCCACAC+AGG | - | chr4.3:27472105-27472124 | None:intergenic | 50.0% | |
| ! | CCCTTGTAGTTGACTTCACC+TGG | + | chr4.3:27472458-27472477 | MS.gene006934:intron | 50.0% |
| ! | CCTGTGTCGTTCATCCTTAG+TGG | + | chr4.3:27471020-27471039 | MS.gene006934:intron | 50.0% |
| ! | GTAGTTGACTTCACCTGGTG+AGG | + | chr4.3:27472463-27472482 | MS.gene006934:intron | 50.0% |
| ! | GTCAAAACAGGTTGGAGGCT+TGG | - | chr4.3:27471302-27471321 | None:intergenic | 50.0% |
| !! | GTTTTTCTGGAGGGGAGAAG+GGG | + | chr4.3:27470795-27470814 | MS.gene006934:intron | 50.0% |
| !!! | AGCCTCCAACCTGTTTTGAC+TGG | + | chr4.3:27471302-27471321 | MS.gene006934:intron | 50.0% |
| CACAAACATGCACAGGGCTG+TGG | + | chr4.3:27471666-27471685 | MS.gene006934:CDS | 55.0% | |
| CACAGCCCTGTGCATGTTTG+TGG | - | chr4.3:27471668-27471687 | None:intergenic | 55.0% | |
| CACAGGTAACAGCATTCGGG+TGG | - | chr4.3:27470885-27470904 | None:intergenic | 55.0% | |
| CAGGTAACAGCATTCGGGTG+GGG | - | chr4.3:27470883-27470902 | None:intergenic | 55.0% | |
| CCCGAATGCTGTTACCTGTG+TGG | + | chr4.3:27470885-27470904 | MS.gene006934:intron | 55.0% | |
| GGTGGAGAAAATAGAGGCGG+TGG | - | chr4.3:27469718-27469737 | None:intergenic | 55.0% | |
| GGTTGCCTTTGGGCAATTCC+TGG | + | chr4.3:27471719-27471738 | MS.gene006934:CDS | 55.0% | |
| TTGACAGCAACCTGGCATCG+GGG | + | chr4.3:27471598-27471617 | MS.gene006934:intron | 55.0% | |
| AACATGCACAGGGCTGTGGC+TGG | + | chr4.3:27471670-27471689 | MS.gene006934:CDS | 60.0% | |
| ACTACTTCACCCCCGATGCC+AGG | - | chr4.3:27471611-27471630 | None:intergenic | 60.0% | |
| GGGTGAAGTAGTGCCTCACC+AGG | + | chr4.3:27471619-27471638 | MS.gene006934:CDS | 60.0% | |
| ! | TGACAGCAACCTGGCATCGG+GGG | + | chr4.3:27471599-27471618 | MS.gene006934:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27469495 | 27472920 | 27469495 | ID=MS.gene006934 |
| chr4.3 | mRNA | 27469495 | 27472920 | 27469495 | ID=MS.gene006934.t1;Parent=MS.gene006934 |
| chr4.3 | exon | 27469495 | 27469540 | 27469495 | ID=MS.gene006934.t1.exon1;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27469495 | 27469540 | 27469495 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27469622 | 27469746 | 27469622 | ID=MS.gene006934.t1.exon2;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27469622 | 27469746 | 27469622 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27469840 | 27469900 | 27469840 | ID=MS.gene006934.t1.exon3;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27469840 | 27469900 | 27469840 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27470000 | 27470068 | 27470000 | ID=MS.gene006934.t1.exon4;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27470000 | 27470068 | 27470000 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27470550 | 27470668 | 27470550 | ID=MS.gene006934.t1.exon5;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27470550 | 27470668 | 27470550 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27471605 | 27471752 | 27471605 | ID=MS.gene006934.t1.exon6;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27471605 | 27471752 | 27471605 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27471863 | 27472007 | 27471863 | ID=MS.gene006934.t1.exon7;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27471863 | 27472007 | 27471863 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27472118 | 27472204 | 27472118 | ID=MS.gene006934.t1.exon8;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27472118 | 27472204 | 27472118 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| chr4.3 | exon | 27472878 | 27472920 | 27472878 | ID=MS.gene006934.t1.exon9;Parent=MS.gene006934.t1 |
| chr4.3 | CDS | 27472878 | 27472920 | 27472878 | ID=cds.MS.gene006934.t1;Parent=MS.gene006934.t1 |
| Gene Sequence |
| Protein sequence |
