AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01565

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01565.t1 MTR_2g016160 99.686 318 1 0 1 318 1 318 0.0 653
MS.gene01565.t1 MTR_4g073080 26.891 238 164 4 47 274 99 336 3.96e-20 90.5
MS.gene01565.t1 MTR_4g119620 26.047 215 154 5 96 309 67 277 3.07e-19 87.0
MS.gene01565.t1 MTR_4g119620 24.000 275 195 10 45 314 61 326 2.47e-12 67.0
MS.gene01565.t1 MTR_4g096880 23.411 299 187 6 54 310 105 403 9.48e-19 86.7
MS.gene01565.t1 MTR_4g096880 24.571 175 117 2 64 223 230 404 1.37e-11 65.5
MS.gene01565.t1 MTR_6g004040 27.670 206 141 6 61 266 59 256 3.62e-17 82.4
MS.gene01565.t1 MTR_2g012630 28.436 211 143 7 100 309 8 211 4.91e-17 82.4
MS.gene01565.t1 MTR_1g072140 29.412 187 126 5 125 309 86 268 7.93e-17 80.1
MS.gene01565.t1 MTR_7g104550 33.333 180 103 7 100 265 9 185 9.00e-17 80.1
MS.gene01565.t1 MTR_5g016350 29.670 182 113 7 97 269 408 583 2.27e-16 80.1
MS.gene01565.t1 MTR_2g102277 30.000 190 125 6 78 265 73 256 2.50e-16 80.1
MS.gene01565.t1 MTR_2g102277 30.000 190 125 6 78 265 73 256 2.84e-16 80.1
MS.gene01565.t1 MTR_5g016350 29.670 182 113 7 97 269 344 519 3.78e-16 79.3
MS.gene01565.t1 MTR_2g012630 28.436 211 143 7 100 309 8 211 7.46e-16 79.0
MS.gene01565.t1 MTR_4g011950 29.474 190 126 6 78 265 73 256 8.25e-16 78.6
MS.gene01565.t1 MTR_4g095058 29.121 182 114 7 97 269 403 578 2.19e-15 77.0
MS.gene01565.t1 MTR_4g095058 29.121 182 114 7 97 269 401 576 2.33e-15 77.0
MS.gene01565.t1 MTR_8g027985 25.843 267 172 10 60 310 649 905 2.38e-15 77.4
MS.gene01565.t1 MTR_8g080700 28.022 182 112 6 99 267 216 391 2.45e-15 76.6
MS.gene01565.t1 MTR_3g106080 28.700 223 126 9 72 267 358 574 3.38e-15 76.6
MS.gene01565.t1 MTR_5g097870 26.667 225 153 3 62 277 252 473 1.19e-14 74.7
MS.gene01565.t1 MTR_5g097870 27.811 169 115 1 106 267 250 418 2.18e-11 64.7
MS.gene01565.t1 MTR_1g050340 27.193 228 153 8 83 310 573 787 1.34e-14 74.7
MS.gene01565.t1 MTR_1g050340 27.193 228 153 8 83 310 572 786 1.36e-14 74.7
MS.gene01565.t1 MTR_5g016370 27.222 180 116 7 99 269 422 595 1.49e-14 74.7
MS.gene01565.t1 MTR_3g045130 25.664 226 159 7 84 309 294 510 2.17e-14 73.9
MS.gene01565.t1 MTR_3g045130 27.586 203 133 7 66 265 319 510 2.64e-14 73.6
MS.gene01565.t1 MTR_7g086360 29.452 146 99 4 122 267 112 253 3.52e-14 72.8
MS.gene01565.t1 MTR_5g009530 30.323 155 105 2 113 267 776 927 1.28e-13 72.0
MS.gene01565.t1 MTR_5g022690 26.613 248 155 10 41 273 163 398 1.37e-13 71.6
MS.gene01565.t1 MTR_5g009530 30.323 155 105 2 113 267 776 927 1.49e-13 72.0
MS.gene01565.t1 MTR_3g092840 27.568 185 127 4 112 292 138 319 1.61e-12 67.8
MS.gene01565.t1 MTR_2g085210 27.053 207 140 5 109 309 616 817 2.98e-12 67.8
MS.gene01565.t1 MTR_5g097870 27.835 194 128 3 62 246 252 442 4.30e-12 67.0
MS.gene01565.t1 MTR_5g097870 27.811 169 115 1 106 267 250 418 1.97e-11 65.1
MS.gene01565.t1 MTR_5g024090 30.319 188 105 9 99 269 210 388 4.87e-12 66.6
MS.gene01565.t1 MTR_4g105700 26.582 237 154 9 85 309 383 611 1.49e-11 65.9
MS.gene01565.t1 MTR_3g115200 21.014 276 194 7 10 265 9 280 3.61e-11 63.2
MS.gene01565.t1 MTR_3g115200 21.014 276 194 7 10 265 9 280 5.84e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01565.t1 AT1G29260 81.191 319 57 2 1 318 1 317 0.0 558
MS.gene01565.t1 AT4G35050 26.809 235 159 4 46 267 101 335 1.35e-20 92.0
MS.gene01565.t1 AT5G58230 23.000 300 189 6 53 310 104 403 6.27e-20 90.1
MS.gene01565.t1 AT5G58230 24.000 175 118 2 64 223 230 404 1.22e-11 65.5
MS.gene01565.t1 AT3G49660 26.050 238 169 6 76 310 38 271 2.11e-19 87.4
MS.gene01565.t1 AT2G16780 24.153 236 166 3 45 267 99 334 1.10e-17 83.6
MS.gene01565.t1 AT2G16780 21.888 233 153 6 10 223 171 393 1.92e-11 64.7
MS.gene01565.t1 AT2G26060 35.519 183 96 9 100 265 13 190 1.08e-16 80.1
MS.gene01565.t1 AT2G26060 35.519 183 96 9 100 265 13 190 1.29e-16 79.7
MS.gene01565.t1 AT5G08390 25.926 216 152 6 51 266 49 256 1.40e-16 80.9
MS.gene01565.t1 AT5G23430 25.926 216 152 6 51 266 49 256 1.89e-16 80.5
MS.gene01565.t1 AT5G23430 25.926 216 152 6 51 266 49 256 1.89e-16 80.5
MS.gene01565.t1 AT5G23430 25.926 216 152 6 51 266 49 256 1.96e-16 80.5
MS.gene01565.t1 AT2G05720 28.054 221 128 7 75 290 76 270 3.10e-16 77.8
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.21e-16 79.7
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.27e-16 79.3
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.27e-16 79.3
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.27e-16 79.3
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.27e-16 79.3
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.42e-16 79.3
MS.gene01565.t1 AT3G15980 30.000 190 125 6 78 265 73 256 4.50e-16 79.3
MS.gene01565.t1 AT5G67320 29.670 182 113 7 97 269 438 613 9.08e-16 78.2
MS.gene01565.t1 AT1G52360 29.474 190 126 6 78 265 73 256 9.11e-16 78.6
MS.gene01565.t1 AT1G52360 29.474 190 126 6 78 265 73 256 9.11e-16 78.6
MS.gene01565.t1 AT1G52360 29.474 190 126 6 78 265 117 300 1.24e-15 78.2
MS.gene01565.t1 AT1G52360 29.474 190 126 6 78 265 73 256 1.24e-15 78.2
MS.gene01565.t1 AT1G79990 30.000 190 125 6 78 265 73 256 1.92e-15 77.4
MS.gene01565.t1 AT1G79990 30.000 190 125 6 78 265 73 256 2.06e-15 77.4
MS.gene01565.t1 AT5G25150 28.626 262 154 11 72 309 361 613 4.26e-15 76.3
MS.gene01565.t1 AT5G25150 28.626 262 154 11 72 309 361 613 4.66e-15 76.3
MS.gene01565.t1 AT2G19540 27.374 179 117 4 99 267 215 390 9.11e-15 75.1
MS.gene01565.t1 AT1G61210 26.190 210 149 6 100 309 8 211 1.51e-14 75.1
MS.gene01565.t1 AT1G61210 25.500 200 140 6 71 269 67 258 1.03e-13 72.4
MS.gene01565.t1 AT1G61210 26.190 210 149 6 100 309 8 211 2.18e-14 74.3
MS.gene01565.t1 AT1G61210 25.500 200 140 6 71 269 67 258 1.70e-13 71.6
MS.gene01565.t1 AT1G61210 26.190 210 149 6 100 309 8 211 2.22e-14 74.3
MS.gene01565.t1 AT1G61210 25.500 200 140 6 71 269 67 258 1.84e-13 71.6
MS.gene01565.t1 AT4G18900 30.952 168 110 1 106 267 232 399 5.12e-14 72.8
MS.gene01565.t1 AT4G18900 27.803 223 148 5 64 277 236 454 5.56e-14 72.8
MS.gene01565.t1 AT2G43770 30.822 146 97 4 122 267 110 251 7.73e-14 71.6
MS.gene01565.t1 AT2G43770 27.570 214 136 9 62 266 97 300 4.14e-11 63.5
MS.gene01565.t1 AT1G11160 24.623 199 141 6 72 269 68 258 2.09e-13 71.2
MS.gene01565.t1 AT1G11160 24.623 199 141 6 72 269 68 258 2.15e-13 71.2
MS.gene01565.t1 AT1G11160 24.623 199 141 6 72 269 26 216 2.23e-13 71.2
MS.gene01565.t1 AT1G11160 24.623 199 141 6 72 269 68 258 2.34e-13 71.2
MS.gene01565.t1 AT2G32950 27.602 221 147 6 90 309 296 504 3.03e-13 70.5
MS.gene01565.t1 AT2G32950 27.602 221 147 6 90 309 409 617 4.11e-13 70.5
MS.gene01565.t1 AT4G11110 25.571 219 143 5 59 267 721 929 8.49e-13 69.7
MS.gene01565.t1 AT2G46340 27.184 206 135 5 113 309 771 970 1.41e-12 68.9
MS.gene01565.t1 AT2G46340 27.184 206 135 5 113 309 771 970 1.41e-12 68.9
MS.gene01565.t1 AT4G18905 26.754 228 151 5 62 277 266 489 1.82e-12 68.2
MS.gene01565.t1 AT4G02730 25.595 168 119 6 100 266 36 198 1.93e-12 67.4
MS.gene01565.t1 AT4G18905 26.754 228 151 5 62 277 276 499 2.08e-12 68.2
MS.gene01565.t1 AT4G35370 26.455 189 135 2 83 267 189 377 3.75e-12 67.0
MS.gene01565.t1 AT4G35370 27.461 193 134 3 64 253 219 408 1.42e-11 65.5
MS.gene01565.t1 AT5G24520 28.144 167 114 3 105 267 130 294 5.41e-12 66.2
MS.gene01565.t1 AT5G24520 28.144 167 114 3 105 267 130 294 5.41e-12 66.2
MS.gene01565.t1 AT5G24520 28.144 167 114 3 105 267 130 294 5.41e-12 66.2
MS.gene01565.t1 AT5G24520 28.144 167 114 3 105 267 130 294 5.41e-12 66.2
MS.gene01565.t1 AT3G16650 29.213 178 117 7 82 259 190 358 2.14e-11 64.7
MS.gene01565.t1 AT1G20540 26.087 184 128 5 87 265 100 280 2.56e-11 64.3
MS.gene01565.t1 AT3G15354 25.728 206 144 4 109 309 335 536 5.04e-11 63.9
MS.gene01565.t1 AT3G15354 25.728 206 144 4 109 309 335 536 5.04e-11 63.9
MS.gene01565.t1 AT3G15354 25.728 206 144 4 109 309 585 786 7.24e-11 63.5
MS.gene01565.t1 AT4G15900 24.561 228 161 7 82 309 196 412 7.32e-11 63.2
MS.gene01565.t1 AT5G13480 27.972 143 100 3 123 265 233 372 8.37e-11 63.2
MS.gene01565.t1 AT5G13480 27.972 143 100 3 123 265 222 361 8.94e-11 63.2
MS.gene01565.t1 AT5G13480 27.972 143 100 3 123 265 210 349 9.62e-11 63.2
MS.gene01565.t1 AT5G13480 27.972 143 100 3 123 265 210 349 9.70e-11 63.2

Find 92 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGTACTGTCAGAATT+TGG 0.134510 2.2:-67422864 MS.gene01565:CDS
GTTCCGGTTGCCGTGCTTAA+TGG 0.204077 2.2:-67421937 MS.gene01565:CDS
TTTGGGATGTAAGGAGTTAT+AGG 0.273478 2.2:-67421960 MS.gene01565:CDS
GGGACGATACCGTCAAATTA+TGG 0.291682 2.2:-67422993 MS.gene01565:CDS
TTCCGGTTGCCGTGCTTAAT+GGG 0.295179 2.2:-67421936 MS.gene01565:CDS
ATGATATGACTGTTTGTGTT+TGG 0.299620 2.2:-67421846 MS.gene01565:CDS
ATTGTGTTTATTCATCTGTT+TGG 0.320363 2.2:-67422924 MS.gene01565:CDS
TTGGGATGTAAGGAGTTATA+GGG 0.332484 2.2:-67421959 MS.gene01565:CDS
TGATATGACTGTTTGTGTTT+GGG 0.333313 2.2:-67421845 MS.gene01565:CDS
CAGTTAAGGTTTGGGATGTA+AGG 0.354149 2.2:-67421969 MS.gene01565:CDS
TTGATAAGTCAGTTAAGGTT+TGG 0.355478 2.2:-67421978 MS.gene01565:CDS
TAGGCGGCGATTTCGGTGAT+TGG 0.373569 2.2:+67423225 None:intergenic
TGATAAGTCAGTTAAGGTTT+GGG 0.383380 2.2:-67421977 MS.gene01565:CDS
ATCATACTGAGTTTGCTGTT+GGG 0.389414 2.2:-67421783 MS.gene01565:CDS
TGTTCATGAAAGGAACGAAT+AGG 0.390721 2.2:+67423081 None:intergenic
GGGATGAACTTGTTTATGTT+TGG 0.393483 2.2:-67421714 MS.gene01565:CDS
GGTGATTGGGAGAGTGGGGT+TGG 0.394635 2.2:+67423239 None:intergenic
GATGAATGTATAATTGCAAC+TGG 0.406242 2.2:-67422006 MS.gene01565:CDS
TGTAAGGAGTTATAGGGTTC+CGG 0.408160 2.2:-67421953 MS.gene01565:CDS
GCTTCTTGCTAGTACTGGTT+GGG 0.412462 2.2:-67421734 MS.gene01565:CDS
ATGAGATTCTTTCGTGCGAT+TGG 0.420567 2.2:-67422038 MS.gene01565:CDS
GATATGAGTGTTCTTGTTGA+AGG 0.426691 2.2:-67421757 MS.gene01565:CDS
TGACGGAGTAACCGTTGAAT+GGG 0.426922 2.2:+67423358 None:intergenic
TGCCCATTAAGCACGGCAAC+CGG 0.427081 2.2:+67421934 None:intergenic
GTCGGTTGATAAGTCAGTTA+AGG 0.429070 2.2:-67421983 MS.gene01565:CDS
GGCTTCTTGCTAGTACTGGT+TGG 0.432245 2.2:-67421735 MS.gene01565:CDS
AGAAACGAATCACGGCGAAC+AGG 0.432589 2.2:+67423027 None:intergenic
TTGACGGAGTAACCGTTGAA+TGG 0.442266 2.2:+67423357 None:intergenic
GGATTGTACTGTCAGAATTT+GGG 0.443764 2.2:-67422863 MS.gene01565:CDS
GAAGGGCTTCTTGCTAGTAC+TGG 0.444363 2.2:-67421739 MS.gene01565:CDS
ATTTCGGTGATTGGGAGAGT+GGG 0.454712 2.2:+67423234 None:intergenic
GATTGGGAGAGTGGGGTTGG+AGG 0.460624 2.2:+67423242 None:intergenic
CTTGTTTATGTTTGGCAACA+TGG 0.461447 2.2:-67421706 MS.gene01565:CDS
GGTGTCGTAGGCGGCGATTT+CGG 0.462174 2.2:+67423218 None:intergenic
GTTCATGAAAGGAACGAATA+GGG 0.469484 2.2:+67423082 None:intergenic
GTAGAAGGGGCTGAATTTGA+CGG 0.470246 2.2:+67423341 None:intergenic
CATCATACTGAGTTTGCTGT+TGG 0.478915 2.2:-67421784 MS.gene01565:CDS
AGGCGGCGATTTCGGTGATT+GGG 0.479284 2.2:+67423226 None:intergenic
TGGAGGAGAGTTCGAGGACG+TGG 0.479460 2.2:+67423259 None:intergenic
GGCAACGGCGGCGACGGTAA+TGG 0.482055 2.2:+67423152 None:intergenic
ACCGTCGCCGCCGTTGCCGA+TGG 0.484087 2.2:-67423147 MS.gene01565:CDS
ATTTGGGATGTTCGTGAACC+AGG 0.485985 2.2:-67422847 MS.gene01565:intron
TCATACTGAGTTTGCTGTTG+GGG 0.495869 2.2:-67421782 MS.gene01565:CDS
TGGGGTTGGAGGAGAGTTCG+AGG 0.501933 2.2:+67423253 None:intergenic
ATATGAGTGTTCTTGTTGAA+GGG 0.514929 2.2:-67421756 MS.gene01565:CDS
AGGTTCTACAATGATTCTTC+CGG 0.515402 2.2:-67422070 MS.gene01565:CDS
GCCGCATGTGAGGAATTTGT+TGG 0.515565 2.2:-67421881 MS.gene01565:CDS
GCATGGTTATGCTGTTAGAA+AGG 0.517131 2.2:-67421914 MS.gene01565:CDS
GATGCCGTCGGCGGTGTCGT+AGG 0.517224 2.2:+67423206 None:intergenic
GGCAACATGGAACTGATCCT+AGG 0.522032 2.2:-67421693 MS.gene01565:CDS
TTGAACGTTCTCACCGAAGT+GGG 0.523846 2.2:+67422958 None:intergenic
GATTTCGGTGATTGGGAGAG+TGG 0.524323 2.2:+67423233 None:intergenic
ACCATCGGCAACGGCGGCGA+CGG 0.530414 2.2:+67423146 None:intergenic
CTTCCCTTTCAAGATGCCCT+AGG 0.540302 2.2:+67421676 None:intergenic
GTCGCCACCGCTCAAAACTT+CGG 0.541735 2.2:-67423303 MS.gene01565:CDS
GTTGCCGTGCTTAATGGGCA+TGG 0.541849 2.2:-67421931 MS.gene01565:CDS
ATCCACGGTCCATAATTTGA+CGG 0.542435 2.2:+67422984 None:intergenic
AACTTCGGCATCCTCGGCAA+CGG 0.545359 2.2:-67423288 MS.gene01565:CDS
AGAATCTCATGTTCATGTGC+CGG 0.550681 2.2:+67422051 None:intergenic
TTCGTTTCTCTCCGCTGCGT+GGG 0.552872 2.2:-67423013 MS.gene01565:CDS
GCTCAAAACTTCGGCATCCT+CGG 0.554172 2.2:-67423294 MS.gene01565:CDS
AGCGAGGTCGTAGAGTTTGA+CGG 0.554977 2.2:+67423122 None:intergenic
GTAGAGTTTGACGGAACCAT+CGG 0.556953 2.2:+67423131 None:intergenic
CGAATAGGGTTTGAAGTAGG+TGG 0.559454 2.2:+67423096 None:intergenic
ATTCGTTTCTCTCCGCTGCG+TGG 0.561476 2.2:-67423014 MS.gene01565:CDS
CACCGAAGTGGGACGATCCA+CGG 0.563775 2.2:+67422969 None:intergenic
GCAACATGGAACTGATCCTA+GGG 0.574620 2.2:-67421692 MS.gene01565:CDS
CGTGGAGACGGCCGTTGCCG+AGG 0.577422 2.2:+67423277 None:intergenic
GACGGAACCATCGGCAACGG+CGG 0.578656 2.2:+67423140 None:intergenic
AGAGTTCGAGGACGTGGAGA+CGG 0.581734 2.2:+67423265 None:intergenic
GAGCGGTGGCGACGGCGATG+CGG 0.585400 2.2:+67423313 None:intergenic
GCCGCCTACGACACCGCCGA+CGG 0.585566 2.2:-67423210 MS.gene01565:CDS
GCCGTCGGCGGTGTCGTAGG+CGG 0.589550 2.2:+67423209 None:intergenic
TTCACGTGTATGTTCATGAA+AGG 0.590355 2.2:+67423071 None:intergenic
GACCGTGGATCGTCCCACTT+CGG 0.593212 2.2:-67422971 MS.gene01565:CDS
TTTGAACGTTCTCACCGAAG+TGG 0.595208 2.2:+67422957 None:intergenic
TTTCGGTGATTGGGAGAGTG+GGG 0.608168 2.2:+67423235 None:intergenic
TTTGACGGAACCATCGGCAA+CGG 0.611477 2.2:+67423137 None:intergenic
GAACGAATAGGGTTTGAAGT+AGG 0.614418 2.2:+67423093 None:intergenic
ATAACCATGCCCATTAAGCA+CGG 0.633480 2.2:+67421927 None:intergenic
GACGGAGTAACCGTTGAATG+GGG 0.634585 2.2:+67423359 None:intergenic
ACCAACAAATTCCTCACATG+CGG 0.642131 2.2:+67421880 None:intergenic
GACGGTATCGTCCCACGCAG+CGG 0.642717 2.2:+67423002 None:intergenic
ACGGCATCTACGACGTCACA+TGG 0.642993 2.2:-67423191 MS.gene01565:CDS
CAGCGGAGAGAAACGAATCA+CGG 0.652885 2.2:+67423019 None:intergenic
TACCGTCAAATTATGGACCG+TGG 0.654878 2.2:-67422986 MS.gene01565:CDS
TTGAAGTAGGTGGAAGAGCG+AGG 0.660138 2.2:+67423106 None:intergenic
GACGTCGTAGATGCCGTCGG+CGG 0.671920 2.2:+67423197 None:intergenic
TGTGACGTCGTAGATGCCGT+CGG 0.679756 2.2:+67423194 None:intergenic
ATGTATAATTGCAACTGGGT+CGG 0.683430 2.2:-67422001 MS.gene01565:CDS
GCGAACAGGATTATAATCAA+CGG 0.693874 2.2:+67423041 None:intergenic
ATGAATGTATAATTGCAACT+GGG 0.763887 2.2:-67422005 MS.gene01565:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCATTAAAGCAAAATTA+CGG - chr2.2:67422470-67422489 MS.gene01565:intron 20.0%
!! ATTACTTAAAAACCTAGTAT+TGG + chr2.2:67422927-67422946 None:intergenic 20.0%
!! TACTTAAATTAGTGTATGTT+TGG + chr2.2:67422868-67422887 None:intergenic 20.0%
!! TATATCAAAATTGTAATACC+TGG + chr2.2:67422233-67422252 None:intergenic 20.0%
!!! AGAATATATTTTGACATGTT+TGG + chr2.2:67422806-67422825 None:intergenic 20.0%
!!! AGAATTGATTTTGATATGTT+TGG + chr2.2:67422713-67422732 None:intergenic 20.0%
!!! ATAGTTCAACTAACTTTTAA+GGG + chr2.2:67422591-67422610 None:intergenic 20.0%
!!! TATAGTTCAACTAACTTTTA+AGG + chr2.2:67422592-67422611 None:intergenic 20.0%
!!! TTTTAGCTATAGTTAAGTTA+AGG - chr2.2:67422386-67422405 MS.gene01565:intron 20.0%
! ATCCATTAAAGCAAAATTAC+GGG - chr2.2:67422471-67422490 MS.gene01565:intron 25.0%
! ATGAATGTATAATTGCAACT+GGG - chr2.2:67423054-67423073 MS.gene01565:CDS 25.0%
! ATTGTGTTTATTCATCTGTT+TGG - chr2.2:67422135-67422154 MS.gene01565:intron 25.0%
! TAACTATTACATCCAATACT+AGG - chr2.2:67422912-67422931 MS.gene01565:CDS 25.0%
! TATCTATTACATCTAATACC+AGG - chr2.2:67422969-67422988 MS.gene01565:CDS 25.0%
!! TCTAAGTGTATGTTTCATTT+TGG - chr2.2:67422316-67422335 MS.gene01565:intron 25.0%
AAGTAGAATCAGTGTATGTT+TGG + chr2.2:67422775-67422794 None:intergenic 30.0%
ATATGAGTGTTCTTGTTGAA+GGG - chr2.2:67423303-67423322 MS.gene01565:CDS 30.0%
ATGATATGACTGTTTGTGTT+TGG - chr2.2:67423213-67423232 MS.gene01565:CDS 30.0%
GATGAATGTATAATTGCAAC+TGG - chr2.2:67423053-67423072 MS.gene01565:CDS 30.0%
TGATAAGTCAGTTAAGGTTT+GGG - chr2.2:67423082-67423101 MS.gene01565:CDS 30.0%
TGATATGACTGTTTGTGTTT+GGG - chr2.2:67423214-67423233 MS.gene01565:CDS 30.0%
TGTAAAAATGAGCTGAACAT+CGG - chr2.2:67422427-67422446 MS.gene01565:intron 30.0%
TTGATAAGTCAGTTAAGGTT+TGG - chr2.2:67423081-67423100 MS.gene01565:CDS 30.0%
! TACCCGTAATTTTGCTTTAA+TGG + chr2.2:67422476-67422495 None:intergenic 30.0%
!! ATACACTGATTCTACTTTAG+AGG - chr2.2:67422778-67422797 MS.gene01565:intron 30.0%
!! ATACGGGTTAGAATTGATTA+TGG + chr2.2:67422742-67422761 None:intergenic 30.0%
!! TGTTTGTGTTTGGGATTTTA+TGG - chr2.2:67423223-67423242 MS.gene01565:CDS 30.0%
!!! AATTTTGACTCTTCCAAAAG+TGG - chr2.2:67422840-67422859 MS.gene01565:intron 30.0%
AATTCTAACCCGTATAGAAG+TGG - chr2.2:67422747-67422766 MS.gene01565:intron 35.0%
AGGTTCTACAATGATTCTTC+CGG - chr2.2:67422989-67423008 MS.gene01565:CDS 35.0%
ATGTATAATTGCAACTGGGT+CGG - chr2.2:67423058-67423077 MS.gene01565:CDS 35.0%
CTTGTTTATGTTTGGCAACA+TGG - chr2.2:67423353-67423372 MS.gene01565:CDS 35.0%
GATATGAGTGTTCTTGTTGA+AGG - chr2.2:67423302-67423321 MS.gene01565:CDS 35.0%
GCGAACAGGATTATAATCAA+CGG + chr2.2:67422021-67422040 None:intergenic 35.0%
GCTTCAAGCAGAATCAATTA+TGG - chr2.2:67422659-67422678 MS.gene01565:intron 35.0%
GGATTGTACTGTCAGAATTT+GGG - chr2.2:67422196-67422215 MS.gene01565:intron 35.0%
GGGTTAGAATTGATTATGGA+GGG + chr2.2:67422738-67422757 None:intergenic 35.0%
GTTCATGAAAGGAACGAATA+GGG + chr2.2:67421980-67421999 None:intergenic 35.0%
TCAAGCAGAATCAATTATGG+AGG - chr2.2:67422662-67422681 MS.gene01565:intron 35.0%
TGTTCATGAAAGGAACGAAT+AGG + chr2.2:67421981-67422000 None:intergenic 35.0%
TTCACGTGTATGTTCATGAA+AGG + chr2.2:67421991-67422010 None:intergenic 35.0%
TTGGGATGTAAGGAGTTATA+GGG - chr2.2:67423100-67423119 MS.gene01565:CDS 35.0%
! GGGATGAACTTGTTTATGTT+TGG - chr2.2:67423345-67423364 MS.gene01565:CDS 35.0%
! GTTTTCAAAACCCCATTCAA+CGG - chr2.2:67421690-67421709 MS.gene01565:CDS 35.0%
! TGTGACTAAAAGTGAGTTGA+AGG - chr2.2:67422539-67422558 MS.gene01565:intron 35.0%
! TGTTTGGTTCCACTTCTATA+CGG + chr2.2:67422759-67422778 None:intergenic 35.0%
! TTTGGGATGTAAGGAGTTAT+AGG - chr2.2:67423099-67423118 MS.gene01565:CDS 35.0%
!! ATCATACTGAGTTTGCTGTT+GGG - chr2.2:67423276-67423295 MS.gene01565:CDS 35.0%
!! TGTATGTTTGGTTCCACTTT+TGG + chr2.2:67422856-67422875 None:intergenic 35.0%
!! TTGTGTTTGGGATTTTATGG+TGG - chr2.2:67423226-67423245 MS.gene01565:CDS 35.0%
!! TTTTATGGTGGAAGATGCTT+TGG - chr2.2:67423238-67423257 MS.gene01565:CDS 35.0%
!!! TTGAATGGGGTTTTGAAAAC+TGG + chr2.2:67421690-67421709 None:intergenic 35.0%
ACCAACAAATTCCTCACATG+CGG + chr2.2:67423182-67423201 None:intergenic 40.0%
AGAAGCCGATGCAAAAACAT+CGG + chr2.2:67422174-67422193 None:intergenic 40.0%
AGAATCTCATGTTCATGTGC+CGG + chr2.2:67423011-67423030 None:intergenic 40.0%
ATAACCATGCCCATTAAGCA+CGG + chr2.2:67423135-67423154 None:intergenic 40.0%
ATCCACGGTCCATAATTTGA+CGG + chr2.2:67422078-67422097 None:intergenic 40.0%
ATGAGATTCTTTCGTGCGAT+TGG - chr2.2:67423021-67423040 MS.gene01565:CDS 40.0%
GCATGGTTATGCTGTTAGAA+AGG - chr2.2:67423145-67423164 MS.gene01565:CDS 40.0%
GGAAGAATCATTGTAGAACC+TGG + chr2.2:67422990-67423009 None:intergenic 40.0%
GGGATTGTACTGTCAGAATT+TGG - chr2.2:67422195-67422214 MS.gene01565:intron 40.0%
TACGGGTATGTTTGATTGTG+CGG - chr2.2:67422488-67422507 MS.gene01565:intron 40.0%
TGTAAGGAGTTATAGGGTTC+CGG - chr2.2:67423106-67423125 MS.gene01565:CDS 40.0%
! CAGTTAAGGTTTGGGATGTA+AGG - chr2.2:67423090-67423109 MS.gene01565:CDS 40.0%
! CGGGTTAGAATTGATTATGG+AGG + chr2.2:67422739-67422758 None:intergenic 40.0%
! GAACGAATAGGGTTTGAAGT+AGG + chr2.2:67421969-67421988 None:intergenic 40.0%
! GTTTGGTTCCACTTCTATAC+GGG + chr2.2:67422758-67422777 None:intergenic 40.0%
! TTAAATTTTCGCCGCATGTG+AGG - chr2.2:67423168-67423187 MS.gene01565:CDS 40.0%
!! CATCATACTGAGTTTGCTGT+TGG - chr2.2:67423275-67423294 MS.gene01565:CDS 40.0%
!! GTCGGTTGATAAGTCAGTTA+AGG - chr2.2:67423076-67423095 MS.gene01565:CDS 40.0%
!! TCATACTGAGTTTGCTGTTG+GGG - chr2.2:67423277-67423296 MS.gene01565:CDS 40.0%
!!! ATGTTTTTGCATCGGCTTCT+GGG - chr2.2:67422174-67422193 MS.gene01565:intron 40.0%
ATTTCGGTGATTGGGAGAGT+GGG + chr2.2:67421828-67421847 None:intergenic 45.0%
GCAACATGGAACTGATCCTA+GGG - chr2.2:67423367-67423386 MS.gene01565:CDS 45.0%
GGGACGATACCGTCAAATTA+TGG - chr2.2:67422066-67422085 MS.gene01565:CDS 45.0%
GTAGAAGGGGCTGAATTTGA+CGG + chr2.2:67421721-67421740 None:intergenic 45.0%
GTAGAGTTTGACGGAACCAT+CGG + chr2.2:67421931-67421950 None:intergenic 45.0%
TACCGTCAAATTATGGACCG+TGG - chr2.2:67422073-67422092 MS.gene01565:intron 45.0%
TGACGGAGTAACCGTTGAAT+GGG + chr2.2:67421704-67421723 None:intergenic 45.0%
TTGAACGTTCTCACCGAAGT+GGG + chr2.2:67422104-67422123 None:intergenic 45.0%
TTGACGGAGTAACCGTTGAA+TGG + chr2.2:67421705-67421724 None:intergenic 45.0%
TTTGAACGTTCTCACCGAAG+TGG + chr2.2:67422105-67422124 None:intergenic 45.0%
! ATTTGGGATGTTCGTGAACC+AGG - chr2.2:67422212-67422231 MS.gene01565:intron 45.0%
! CGAATAGGGTTTGAAGTAGG+TGG + chr2.2:67421966-67421985 None:intergenic 45.0%
!! GCTTCTTGCTAGTACTGGTT+GGG - chr2.2:67423325-67423344 MS.gene01565:CDS 45.0%
!! TCACGCCGATGTTTTTGCAT+CGG - chr2.2:67422166-67422185 MS.gene01565:intron 45.0%
!!! GATGTTTTTGCATCGGCTTC+TGG - chr2.2:67422173-67422192 MS.gene01565:intron 45.0%
!!! TGTTTTTGCATCGGCTTCTG+GGG - chr2.2:67422175-67422194 MS.gene01565:intron 45.0%
AGAAACGAATCACGGCGAAC+AGG + chr2.2:67422035-67422054 None:intergenic 50.0%
AGCGAGGTCGTAGAGTTTGA+CGG + chr2.2:67421940-67421959 None:intergenic 50.0%
CAGCGGAGAGAAACGAATCA+CGG + chr2.2:67422043-67422062 None:intergenic 50.0%
GAAGGGCTTCTTGCTAGTAC+TGG - chr2.2:67423320-67423339 MS.gene01565:CDS 50.0%
GACGGAGTAACCGTTGAATG+GGG + chr2.2:67421703-67421722 None:intergenic 50.0%
GATTTCGGTGATTGGGAGAG+TGG + chr2.2:67421829-67421848 None:intergenic 50.0%
GCCGCATGTGAGGAATTTGT+TGG - chr2.2:67423178-67423197 MS.gene01565:CDS 50.0%
GCTCAAAACTTCGGCATCCT+CGG - chr2.2:67421765-67421784 MS.gene01565:CDS 50.0%
GGCAACATGGAACTGATCCT+AGG - chr2.2:67423366-67423385 MS.gene01565:CDS 50.0%
TTCCGGTTGCCGTGCTTAAT+GGG - chr2.2:67423123-67423142 MS.gene01565:CDS 50.0%
TTGAAGTAGGTGGAAGAGCG+AGG + chr2.2:67421956-67421975 None:intergenic 50.0%
TTTCGGTGATTGGGAGAGTG+GGG + chr2.2:67421827-67421846 None:intergenic 50.0%
TTTGACGGAACCATCGGCAA+CGG + chr2.2:67421925-67421944 None:intergenic 50.0%
! CGATGCGGTTTTCGTAGAAG+GGG + chr2.2:67421734-67421753 None:intergenic 50.0%
! GCGATGCGGTTTTCGTAGAA+GGG + chr2.2:67421735-67421754 None:intergenic 50.0%
!! GGCTTCTTGCTAGTACTGGT+TGG - chr2.2:67423324-67423343 MS.gene01565:CDS 50.0%
!!! GAGGATGCCGAAGTTTTGAG+CGG + chr2.2:67421766-67421785 None:intergenic 50.0%
AACTTCGGCATCCTCGGCAA+CGG - chr2.2:67421771-67421790 MS.gene01565:CDS 55.0%
ACGGCATCTACGACGTCACA+TGG - chr2.2:67421868-67421887 MS.gene01565:CDS 55.0%
AGAGTTCGAGGACGTGGAGA+CGG + chr2.2:67421797-67421816 None:intergenic 55.0%
AGGCGGCGATTTCGGTGATT+GGG + chr2.2:67421836-67421855 None:intergenic 55.0%
ATTCGTTTCTCTCCGCTGCG+TGG - chr2.2:67422045-67422064 MS.gene01565:CDS 55.0%
GCAAAAACATCGGCGTGACG+AGG + chr2.2:67422164-67422183 None:intergenic 55.0%
GTCGCCACCGCTCAAAACTT+CGG - chr2.2:67421756-67421775 MS.gene01565:CDS 55.0%
GTTCCGGTTGCCGTGCTTAA+TGG - chr2.2:67423122-67423141 MS.gene01565:CDS 55.0%
TAGGCGGCGATTTCGGTGAT+TGG + chr2.2:67421837-67421856 None:intergenic 55.0%
TGCCCATTAAGCACGGCAAC+CGG + chr2.2:67423128-67423147 None:intergenic 55.0%
TGTGACGTCGTAGATGCCGT+CGG + chr2.2:67421868-67421887 None:intergenic 55.0%
TTCGTTTCTCTCCGCTGCGT+GGG - chr2.2:67422046-67422065 MS.gene01565:CDS 55.0%
! GGCGATGCGGTTTTCGTAGA+AGG + chr2.2:67421736-67421755 None:intergenic 55.0%
! GTTGCCGTGCTTAATGGGCA+TGG - chr2.2:67423128-67423147 MS.gene01565:CDS 55.0%
!!! GAAGTTTTGAGCGGTGGCGA+CGG + chr2.2:67421757-67421776 None:intergenic 55.0%
!!! GATGCCGAAGTTTTGAGCGG+TGG + chr2.2:67421763-67421782 None:intergenic 55.0%
CACCGAAGTGGGACGATCCA+CGG + chr2.2:67422093-67422112 None:intergenic 60.0%
GACCGTGGATCGTCCCACTT+CGG - chr2.2:67422088-67422107 MS.gene01565:intron 60.0%
GATTGGGAGAGTGGGGTTGG+AGG + chr2.2:67421820-67421839 None:intergenic 60.0%
GGTGATTGGGAGAGTGGGGT+TGG + chr2.2:67421823-67421842 None:intergenic 60.0%
TGGAGGAGAGTTCGAGGACG+TGG + chr2.2:67421803-67421822 None:intergenic 60.0%
TGGGGTTGGAGGAGAGTTCG+AGG + chr2.2:67421809-67421828 None:intergenic 60.0%
! GGTGTCGTAGGCGGCGATTT+CGG + chr2.2:67421844-67421863 None:intergenic 60.0%
GACGGAACCATCGGCAACGG+CGG + chr2.2:67421922-67421941 None:intergenic 65.0%
GACGGTATCGTCCCACGCAG+CGG + chr2.2:67422060-67422079 None:intergenic 65.0%
GACGTCGTAGATGCCGTCGG+CGG + chr2.2:67421865-67421884 None:intergenic 65.0%
ACCATCGGCAACGGCGGCGA+CGG + chr2.2:67421916-67421935 None:intergenic 70.0%
GGCAACGGCGGCGACGGTAA+TGG + chr2.2:67421910-67421929 None:intergenic 70.0%
!! GATGCCGTCGGCGGTGTCGT+AGG + chr2.2:67421856-67421875 None:intergenic 70.0%
ACCGTCGCCGCCGTTGCCGA+TGG - chr2.2:67421912-67421931 MS.gene01565:CDS 75.0%
CGTGGAGACGGCCGTTGCCG+AGG + chr2.2:67421785-67421804 None:intergenic 75.0%
GAGCGGTGGCGACGGCGATG+CGG + chr2.2:67421749-67421768 None:intergenic 75.0%
GCCGCCTACGACACCGCCGA+CGG - chr2.2:67421849-67421868 MS.gene01565:CDS 75.0%
!! GCCGTCGGCGGTGTCGTAGG+CGG + chr2.2:67421853-67421872 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 67421684 67423397 67421684 ID=MS.gene01565
chr2.2 mRNA 67421684 67423397 67421684 ID=MS.gene01565.t1;Parent=MS.gene01565
chr2.2 exon 67422848 67423397 67422848 ID=MS.gene01565.t1.exon1;Parent=MS.gene01565.t1
chr2.2 CDS 67422848 67423397 67422848 ID=cds.MS.gene01565.t1;Parent=MS.gene01565.t1
chr2.2 exon 67421684 67422090 67421684 ID=MS.gene01565.t1.exon2;Parent=MS.gene01565.t1
chr2.2 CDS 67421684 67422090 67421684 ID=cds.MS.gene01565.t1;Parent=MS.gene01565.t1
Gene Sequence

>MS.gene01565

ATGCCAGTTTTCAAAACCCCATTCAACGGTTACTCCGTCAAATTCAGCCCCTTCTACGAAAACCGCATCGCCGTCGCCACCGCTCAAAACTTCGGCATCCTCGGCAACGGCCGTCTCCACGTCCTCGAACTCTCCTCCAACCCCACTCTCCCAATCACCGAAATCGCCGCCTACGACACCGCCGACGGCATCTACGACGTCACATGGTCTGAATCTCACGACTCCATTACCGTCGCCGCCGTTGCCGATGGTTCCGTCAAACTCTACGACCTCGCTCTTCCACCTACTTCAAACCCTATTCGTTCCTTTCATGAACATACACGTGAAGTTCATTCCGTTGATTATAATCCTGTTCGCCGTGATTCGTTTCTCTCCGCTGCGTGGGACGATACCGTCAAATTATGGACCGTGGATCGTCCCACTTCGGTGAGAACGTTCAAAGAGCATGCTTATTGTGTTTATTCATCTGTTTGGAATCCTCGTCACGCCGATGTTTTTGCATCGGCTTCTGGGGATTGTACTGTCAGAATTTGGGATGTTCGTGAACCAGGTATTACAATTTTGATATAACTCACAAATAAATAACAAATTATACAATGATGCTTATATAGCAAATTAAAACAATTGATTAGTCTAAGTGTATGTTTCATTTTGGAGTGAGAAAAATTGATTTTGTTTAGTAAATTGATTCTGTGAAATTGATTTTAGCTATAGTTAAGTTAAGGTAAAGTGATTTATGTTCATGTAAAAATGAGCTGAACATCGGCAATTTCTAGCTTCAAGTAGAATCCATTAAAGCAAAATTACGGGTATGTTTGATTGTGCGGTGACAAGAATTGATTTAGTAAAATTGATTGTGACTAAAAGTGAGTTGAAGGTAAAGTGATTTGTGTTTGAATACATTCCCTTAAAAGTTAGTTGAACTATAAATTTGTTTAGAAAAATCAATTCTAGAATCAAAAGCTACAAGTTCTAGCTTCAAGCAGAATCAATTATGGAGGCAAAATCAATAATACTCGTAAGCAACCAAACATATCAAAATCAATTCTAACCCTCCATAATCAATTCTAACCCGTATAGAAGTGGAACCAAACATACACTGATTCTACTTTAGAGGAACCAAACATGTCAAAATATATTCTACACTTGTAGAATCAATTTTGACTCTTCCAAAAGTGGAACCAAACATACACTAATTTAAGTAACAATTGTGACTAATTATTCTAACTAACTATTACATCCAATACTAGGTTTTTAAGTAATCAGTGTGACTAATTATTCTAATTATCTATTACATCTAATACCAGGTTCTACAATGATTCTTCCGGCACATGAACATGAGATTCTTTCGTGCGATTGGAATAAGTATGATGAATGTATAATTGCAACTGGGTCGGTTGATAAGTCAGTTAAGGTTTGGGATGTAAGGAGTTATAGGGTTCCGGTTGCCGTGCTTAATGGGCATGGTTATGCTGTTAGAAAGGTTAAATTTTCGCCGCATGTGAGGAATTTGTTGGTGTCTTGTTCTTATGATATGACTGTTTGTGTTTGGGATTTTATGGTGGAAGATGCTTTGGTGAGTAGATATGATCATCATACTGAGTTTGCTGTTGGGGTTGATATGAGTGTTCTTGTTGAAGGGCTTCTTGCTAGTACTGGTTGGGATGAACTTGTTTATGTTTGGCAACATGGAACTGATCCTAGGGCATCTTGA
Protein sequence

>MS.gene01565.t1

MPVFKTPFNGYSVKFSPFYENRIAVATAQNFGILGNGRLHVLELSSNPTLPITEIAAYDTADGIYDVTWSESHDSITVAAVADGSVKLYDLALPPTSNPIRSFHEHTREVHSVDYNPVRRDSFLSAAWDDTVKLWTVDRPTSVRTFKEHAYCVYSSVWNPRHADVFASASGDCTVRIWDVREPGSTMILPAHEHEILSCDWNKYDECIIATGSVDKSVKVWDVRSYRVPVAVLNGHGYAVRKVKFSPHVRNLLVSCSYDMTVCVWDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQHGTDPRAS