Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006937.t1 | PNY02770.1 | 92.5 | 335 | 25 | 0 | 1 | 335 | 1 | 335 | 1.60E-62 | 250 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006937.t1 | Q9SZL6 | 77.5 | 324 | 71 | 2 | 8 | 329 | 5 | 328 | 1.1e-24 | 115.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006937.t1 | A0A2K3NIC0 | 92.5 | 335 | 25 | 0 | 1 | 335 | 1 | 335 | 1.1e-62 | 250.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene006937.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene92189 | MS.gene006937 | PPI |
MS.gene77650 | MS.gene006937 | PPI |
MS.gene006937 | MS.gene039043 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006937.t1 | MTR_4g084630 | 97.264 | 329 | 9 | 0 | 7 | 335 | 4 | 332 | 0.0 | 656 |
MS.gene006937.t1 | MTR_6g003960 | 27.010 | 311 | 191 | 4 | 49 | 325 | 283 | 591 | 1.60e-34 | 133 |
MS.gene006937.t1 | MTR_5g068860 | 24.333 | 300 | 223 | 4 | 24 | 322 | 187 | 483 | 9.31e-32 | 125 |
MS.gene006937.t1 | MTR_5g068860 | 22.727 | 220 | 161 | 3 | 46 | 265 | 141 | 351 | 9.69e-14 | 72.4 |
MS.gene006937.t1 | MTR_4g070060 | 26.190 | 294 | 212 | 5 | 31 | 322 | 296 | 586 | 4.49e-31 | 123 |
MS.gene006937.t1 | MTR_2g034600 | 26.374 | 273 | 195 | 4 | 50 | 322 | 217 | 483 | 6.07e-27 | 110 |
MS.gene006937.t1 | MTR_2g034600 | 29.605 | 152 | 105 | 2 | 112 | 263 | 207 | 356 | 2.34e-14 | 73.9 |
MS.gene006937.t1 | MTR_2g034600 | 23.451 | 226 | 162 | 3 | 4 | 226 | 278 | 495 | 2.40e-12 | 68.2 |
MS.gene006937.t1 | MTR_2g034600 | 26.374 | 273 | 195 | 4 | 50 | 322 | 282 | 548 | 8.95e-27 | 110 |
MS.gene006937.t1 | MTR_2g034600 | 29.605 | 152 | 105 | 2 | 112 | 263 | 272 | 421 | 2.81e-14 | 73.9 |
MS.gene006937.t1 | MTR_2g034600 | 23.451 | 226 | 162 | 3 | 4 | 226 | 343 | 560 | 2.63e-12 | 68.2 |
MS.gene006937.t1 | MTR_2g034600 | 26.374 | 273 | 195 | 4 | 50 | 322 | 278 | 544 | 9.15e-27 | 110 |
MS.gene006937.t1 | MTR_2g034600 | 29.605 | 152 | 105 | 2 | 112 | 263 | 268 | 417 | 3.09e-14 | 73.9 |
MS.gene006937.t1 | MTR_2g034600 | 23.451 | 226 | 162 | 3 | 4 | 226 | 339 | 556 | 3.09e-12 | 67.8 |
MS.gene006937.t1 | MTR_1g115415 | 22.115 | 312 | 199 | 5 | 50 | 322 | 145 | 451 | 4.74e-25 | 105 |
MS.gene006937.t1 | MTR_1g115415 | 24.675 | 231 | 148 | 3 | 48 | 253 | 82 | 311 | 1.17e-16 | 80.9 |
MS.gene006937.t1 | MTR_5g094610 | 28.195 | 266 | 177 | 6 | 45 | 301 | 188 | 448 | 2.92e-24 | 103 |
MS.gene006937.t1 | MTR_5g094610 | 27.948 | 229 | 161 | 3 | 44 | 271 | 226 | 451 | 2.67e-19 | 89.0 |
MS.gene006937.t1 | MTR_2g049780 | 23.600 | 250 | 181 | 4 | 72 | 321 | 65 | 304 | 1.09e-17 | 82.8 |
MS.gene006937.t1 | MTR_7g081270 | 29.032 | 217 | 134 | 5 | 119 | 325 | 77 | 283 | 1.74e-16 | 79.0 |
MS.gene006937.t1 | MTR_2g067230 | 28.758 | 153 | 103 | 1 | 170 | 322 | 154 | 300 | 3.63e-16 | 78.6 |
MS.gene006937.t1 | MTR_5g041630 | 26.667 | 225 | 150 | 3 | 100 | 318 | 74 | 289 | 6.19e-16 | 77.8 |
MS.gene006937.t1 | MTR_2g437130 | 22.590 | 332 | 236 | 9 | 3 | 327 | 38 | 355 | 1.49e-12 | 68.2 |
MS.gene006937.t1 | MTR_8g012210 | 21.642 | 268 | 198 | 5 | 20 | 287 | 63 | 318 | 5.86e-12 | 66.2 |
MS.gene006937.t1 | MTR_8g105560 | 20.307 | 261 | 186 | 6 | 79 | 322 | 121 | 376 | 8.54e-12 | 66.2 |
MS.gene006937.t1 | MTR_2g438020 | 20.124 | 323 | 241 | 8 | 11 | 325 | 106 | 419 | 3.07e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene006937.t1 | AT4G38160 | 66.462 | 325 | 107 | 2 | 7 | 329 | 4 | 328 | 2.36e-161 | 454 |
MS.gene006937.t1 | AT4G38160 | 66.462 | 325 | 107 | 2 | 7 | 329 | 4 | 328 | 2.36e-161 | 454 |
MS.gene006937.t1 | AT4G38160 | 66.462 | 325 | 107 | 2 | 7 | 329 | 4 | 328 | 7.12e-161 | 454 |
MS.gene006937.t1 | AT4G38160 | 66.462 | 325 | 107 | 2 | 7 | 329 | 4 | 328 | 4.10e-160 | 452 |
MS.gene006937.t1 | AT2G21710 | 25.763 | 295 | 214 | 5 | 32 | 324 | 304 | 595 | 1.43e-32 | 128 |
MS.gene006937.t1 | AT1G78930 | 29.368 | 269 | 184 | 4 | 67 | 332 | 323 | 588 | 1.42e-31 | 125 |
MS.gene006937.t1 | AT4G02990 | 21.935 | 310 | 204 | 3 | 49 | 322 | 184 | 491 | 2.38e-28 | 115 |
MS.gene006937.t1 | AT4G02990 | 22.422 | 223 | 168 | 2 | 46 | 268 | 149 | 366 | 1.06e-15 | 78.2 |
MS.gene006937.t1 | AT4G02990 | 21.935 | 310 | 204 | 3 | 49 | 322 | 184 | 491 | 2.38e-28 | 115 |
MS.gene006937.t1 | AT4G02990 | 22.422 | 223 | 168 | 2 | 46 | 268 | 149 | 366 | 1.06e-15 | 78.2 |
MS.gene006937.t1 | AT4G14605 | 27.757 | 263 | 184 | 4 | 60 | 322 | 212 | 468 | 1.04e-27 | 113 |
MS.gene006937.t1 | AT4G14605 | 24.272 | 206 | 148 | 2 | 7 | 212 | 266 | 463 | 7.50e-14 | 72.8 |
MS.gene006937.t1 | AT4G14605 | 27.757 | 263 | 184 | 4 | 60 | 322 | 212 | 468 | 1.04e-27 | 113 |
MS.gene006937.t1 | AT4G14605 | 24.272 | 206 | 148 | 2 | 7 | 212 | 266 | 463 | 7.50e-14 | 72.8 |
MS.gene006937.t1 | AT2G44020 | 24.679 | 312 | 191 | 5 | 50 | 322 | 150 | 456 | 3.71e-27 | 111 |
MS.gene006937.t1 | AT2G44020 | 23.318 | 223 | 166 | 2 | 46 | 268 | 114 | 331 | 3.30e-16 | 79.7 |
MS.gene006937.t1 | AT2G21710 | 25.391 | 256 | 186 | 5 | 32 | 285 | 304 | 556 | 9.57e-24 | 102 |
MS.gene006937.t1 | AT2G21710 | 25.591 | 254 | 184 | 5 | 32 | 283 | 304 | 554 | 1.57e-23 | 101 |
MS.gene006937.t1 | AT2G03050 | 27.004 | 237 | 166 | 4 | 87 | 322 | 40 | 270 | 2.10e-23 | 98.2 |
MS.gene006937.t1 | AT2G03050 | 27.004 | 237 | 166 | 4 | 87 | 322 | 39 | 269 | 2.24e-23 | 98.2 |
MS.gene006937.t1 | AT5G55580 | 25.475 | 263 | 176 | 6 | 49 | 301 | 83 | 335 | 6.37e-22 | 95.9 |
MS.gene006937.t1 | AT5G55580 | 25.217 | 230 | 166 | 4 | 44 | 271 | 113 | 338 | 8.53e-19 | 86.7 |
MS.gene006937.t1 | AT5G55580 | 25.475 | 263 | 176 | 6 | 49 | 301 | 189 | 441 | 1.89e-21 | 95.1 |
MS.gene006937.t1 | AT5G55580 | 25.217 | 230 | 166 | 4 | 44 | 271 | 219 | 444 | 2.55e-18 | 85.9 |
MS.gene006937.t1 | AT2G36000 | 26.562 | 192 | 134 | 2 | 131 | 321 | 122 | 307 | 1.74e-19 | 87.8 |
MS.gene006937.t1 | AT2G36000 | 26.562 | 192 | 134 | 2 | 131 | 321 | 122 | 307 | 2.43e-19 | 87.8 |
MS.gene006937.t1 | AT2G34620 | 23.645 | 203 | 153 | 1 | 119 | 321 | 90 | 290 | 6.02e-19 | 86.3 |
MS.gene006937.t1 | AT2G34620 | 29.333 | 150 | 102 | 3 | 50 | 198 | 93 | 239 | 3.89e-12 | 66.6 |
MS.gene006937.t1 | AT3G18870 | 30.348 | 201 | 134 | 5 | 127 | 325 | 76 | 272 | 2.53e-18 | 84.0 |
MS.gene006937.t1 | AT5G54180 | 27.481 | 262 | 179 | 9 | 64 | 321 | 234 | 488 | 5.19e-18 | 85.1 |
MS.gene006937.t1 | AT5G55580 | 24.859 | 177 | 130 | 3 | 44 | 218 | 219 | 394 | 2.91e-14 | 73.6 |
MS.gene006937.t1 | AT5G55580 | 25.116 | 215 | 141 | 6 | 49 | 253 | 189 | 393 | 5.72e-13 | 69.7 |
MS.gene006937.t1 | AT5G64950 | 29.448 | 163 | 108 | 5 | 93 | 253 | 52 | 209 | 3.10e-11 | 64.3 |
MS.gene006937.t1 | AT1G21150 | 19.392 | 263 | 199 | 5 | 5 | 264 | 148 | 400 | 5.21e-11 | 63.9 |
MS.gene006937.t1 | AT1G21150 | 19.392 | 263 | 199 | 5 | 5 | 264 | 84 | 336 | 5.63e-11 | 63.5 |
MS.gene006937.t1 | AT1G21150 | 19.392 | 263 | 199 | 5 | 5 | 264 | 48 | 300 | 7.34e-11 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGACCAAGTACAAGAATTT+TGG | 0.151290 | 4.3:-27406209 | None:intergenic |
GGTTAAGGACCCGTATATTA+TGG | 0.198254 | 4.3:+27406525 | MS.gene006937:CDS |
GTGAACGAGCGGATGAAAAT+TGG | 0.201591 | 4.3:+27406125 | MS.gene006937:CDS |
AGAGAAGCTTTGTCCTCTTT+TGG | 0.259572 | 4.3:+27406342 | MS.gene006937:CDS |
CAAGAGTGTTCGGAATTCTT+TGG | 0.260167 | 4.3:+27406765 | MS.gene006937:CDS |
ACACTATAACCCATAATATA+CGG | 0.287612 | 4.3:-27406535 | None:intergenic |
TGGGAGTATTTGAAAACAAT+TGG | 0.314710 | 4.3:+27406145 | MS.gene006937:CDS |
CGAACACTCTTGATCAAAAT+AGG | 0.322211 | 4.3:-27406754 | None:intergenic |
TTTGACTGAGCAGGATCTTC+AGG | 0.331599 | 4.3:+27406603 | MS.gene006937:CDS |
TTAAAGAACTGTGGATTTCA+TGG | 0.334993 | 4.3:+27406697 | MS.gene006937:CDS |
AAGAAGTTCCACTTGAAGTT+TGG | 0.341154 | 4.3:+27406958 | MS.gene006937:CDS |
TTGAAGTTTGGCTTGTTAGA+AGG | 0.350213 | 4.3:+27406970 | MS.gene006937:CDS |
TAGAGATGTGGATAAGGTTT+TGG | 0.354515 | 4.3:+27406657 | MS.gene006937:CDS |
TGGGTTATAGTGTTGATAAA+AGG | 0.361012 | 4.3:+27406545 | MS.gene006937:CDS |
TGGCCGGCAGATAGTTGATT+TGG | 0.380260 | 4.3:+27406717 | MS.gene006937:CDS |
TGCCCCAAAATTCTTGTACT+TGG | 0.381501 | 4.3:+27406205 | MS.gene006937:CDS |
CTTGATAAAGACGGAATGAT+TGG | 0.389340 | 4.3:+27406493 | MS.gene006937:CDS |
GTTAAGGACCCGTATATTAT+GGG | 0.394405 | 4.3:+27406526 | MS.gene006937:CDS |
GCTGCTGTTATTGCCGCTAC+TGG | 0.445431 | 4.3:-27406011 | None:intergenic |
TGAACGAGCGGATGAAAATT+GGG | 0.448918 | 4.3:+27406126 | MS.gene006937:CDS |
TTTGAGTAGAGATGTGGATA+AGG | 0.454342 | 4.3:+27406651 | MS.gene006937:CDS |
CAGATAGTTGATTTGGTGGT+TGG | 0.459004 | 4.3:+27406724 | MS.gene006937:CDS |
GTGAAATTTCTTGCTAGTGT+TGG | 0.461499 | 4.3:+27406469 | MS.gene006937:CDS |
ATGCTATAACTAATAAGCCT+AGG | 0.489054 | 4.3:-27406424 | None:intergenic |
CAATGAAAAGATTGTTCCAA+TGG | 0.489343 | 4.3:+27406231 | MS.gene006937:CDS |
TTGCAGCTTGAGTGAAATGC+TGG | 0.494640 | 4.3:+27406924 | MS.gene006937:CDS |
TATCCATGCTTCTTTCGTCA+TGG | 0.501505 | 4.3:+27406847 | MS.gene006937:CDS |
GTCGATAGGTTTGACTGAGC+AGG | 0.509092 | 4.3:+27406594 | MS.gene006937:CDS |
CCGGCAGATAGTTGATTTGG+TGG | 0.512541 | 4.3:+27406720 | MS.gene006937:CDS |
ACACTACAAGAGAGTATTTG+AGG | 0.513102 | 4.3:-27406316 | None:intergenic |
AGAACTGTGGATTTCATGGC+CGG | 0.517285 | 4.3:+27406701 | MS.gene006937:CDS |
CACTATAACCCATAATATAC+GGG | 0.530664 | 4.3:-27406534 | None:intergenic |
CACTACAAGAGAGTATTTGA+GGG | 0.546905 | 4.3:-27406315 | None:intergenic |
TGCTATAACTAATAAGCCTA+GGG | 0.547400 | 4.3:-27406423 | None:intergenic |
TAAAAGGCTTCGTCCTACTT+CGG | 0.555828 | 4.3:+27406561 | MS.gene006937:CDS |
CTAACAAGCCAAACTTCAAG+TGG | 0.558319 | 4.3:-27406966 | None:intergenic |
GTGTTGAGACATTCAACCAT+TGG | 0.559854 | 4.3:-27406247 | None:intergenic |
TTCGGAATTCTTTGGAACCG+AGG | 0.584467 | 4.3:+27406773 | MS.gene006937:CDS |
TCAAATACTCTCTTGTAGTG+TGG | 0.603146 | 4.3:+27406318 | MS.gene006937:CDS |
ATAGCAGATGCAACTTCATG+AGG | 0.606629 | 4.3:-27406283 | None:intergenic |
AGGACATACTTTGAGTAACT+AGG | 0.611172 | 4.3:+27406990 | MS.gene006937:CDS |
AGGCCATGACGAAAGAAGCA+TGG | 0.620961 | 4.3:-27406850 | None:intergenic |
ACACTCTTGATCAAAATAGG+AGG | 0.622517 | 4.3:-27406751 | None:intergenic |
CCACCAAATCAACTATCTGC+CGG | 0.624823 | 4.3:-27406720 | None:intergenic |
TAGCATTGAGACGAAGATGA+CGG | 0.632455 | 4.3:+27406441 | MS.gene006937:CDS |
GGCACAAGCTCTTAAAGCAG+AGG | 0.635201 | 4.3:+27406893 | MS.gene006937:CDS |
AGTGTTGGTCTTGATAAAGA+CGG | 0.642183 | 4.3:+27406484 | MS.gene006937:CDS |
AGTAAAATGGAAACCAGTAG+CGG | 0.644038 | 4.3:+27405998 | None:intergenic |
ACATCTCTACTCAAAATCGA+CGG | 0.644998 | 4.3:-27406643 | None:intergenic |
ATAACAGCAGCAACATGATG+TGG | 0.646285 | 4.3:+27406023 | MS.gene006937:CDS |
GACAGCGCATCGTGAACGAG+CGG | 0.663196 | 4.3:+27406114 | MS.gene006937:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATTTTATTGTTAAACCCT+AGG | + | chr4.3:27406407-27406426 | MS.gene006937:CDS | 20.0% |
!!! | TATGATTTTTTAAAGAACTG+TGG | + | chr4.3:27406688-27406707 | MS.gene006937:CDS | 20.0% |
! | ACACTATAACCCATAATATA+CGG | - | chr4.3:27406538-27406557 | None:intergenic | 25.0% |
! | GATTGGAAAAATTATGGTTA+AGG | + | chr4.3:27406510-27406529 | MS.gene006937:CDS | 25.0% |
!!! | AAGTTTTTGGTAGATGTAAT+GGG | + | chr4.3:27406799-27406818 | MS.gene006937:CDS | 25.0% |
!!! | AATTTTCCCGATTTGTTTTT+CGG | - | chr4.3:27406392-27406411 | None:intergenic | 25.0% |
!!! | TGTGAACATTTTTTGTATGA+TGG | - | chr4.3:27406077-27406096 | None:intergenic | 25.0% |
!!! | TTGGCATTTTTTCAAACATT+AGG | + | chr4.3:27406361-27406380 | MS.gene006937:CDS | 25.0% |
ATGCTATAACTAATAAGCCT+AGG | - | chr4.3:27406427-27406446 | None:intergenic | 30.0% | |
CAATGAAAAGATTGTTCCAA+TGG | + | chr4.3:27406231-27406250 | MS.gene006937:CDS | 30.0% | |
CACTATAACCCATAATATAC+GGG | - | chr4.3:27406537-27406556 | None:intergenic | 30.0% | |
CGGAATGATTGGAAAAATTA+TGG | + | chr4.3:27406504-27406523 | MS.gene006937:CDS | 30.0% | |
GTTTGAAAAAATGCCAAAAG+AGG | - | chr4.3:27406358-27406377 | None:intergenic | 30.0% | |
TGAAGAAAAAATTAGTGTCG+CGG | + | chr4.3:27406872-27406891 | MS.gene006937:CDS | 30.0% | |
TGCTATAACTAATAAGCCTA+GGG | - | chr4.3:27406426-27406445 | None:intergenic | 30.0% | |
TTAAAGAACTGTGGATTTCA+TGG | + | chr4.3:27406697-27406716 | MS.gene006937:CDS | 30.0% | |
! | AGACCAAGTACAAGAATTTT+GGG | - | chr4.3:27406211-27406230 | None:intergenic | 30.0% |
!! | ATTTTCCCGATTTGTTTTTC+GGG | - | chr4.3:27406391-27406410 | None:intergenic | 30.0% |
!! | TGGGAGTATTTGAAAACAAT+TGG | + | chr4.3:27406145-27406164 | MS.gene006937:CDS | 30.0% |
!! | TGGGTTATAGTGTTGATAAA+AGG | + | chr4.3:27406545-27406564 | MS.gene006937:CDS | 30.0% |
!!! | CAAGTTTTTGGTAGATGTAA+TGG | + | chr4.3:27406798-27406817 | MS.gene006937:CDS | 30.0% |
!!! | CTATTTTGATCAAGAGTGTT+CGG | + | chr4.3:27406755-27406774 | MS.gene006937:CDS | 30.0% |
AAGAAGTTCCACTTGAAGTT+TGG | + | chr4.3:27406958-27406977 | MS.gene006937:CDS | 35.0% | |
ACACTCTTGATCAAAATAGG+AGG | - | chr4.3:27406754-27406773 | None:intergenic | 35.0% | |
ACATCTCTACTCAAAATCGA+CGG | - | chr4.3:27406646-27406665 | None:intergenic | 35.0% | |
CGAACACTCTTGATCAAAAT+AGG | - | chr4.3:27406757-27406776 | None:intergenic | 35.0% | |
CTTGATAAAGACGGAATGAT+TGG | + | chr4.3:27406493-27406512 | MS.gene006937:CDS | 35.0% | |
GTGAAATTTCTTGCTAGTGT+TGG | + | chr4.3:27406469-27406488 | MS.gene006937:CDS | 35.0% | |
GTTAAGGACCCGTATATTAT+GGG | + | chr4.3:27406526-27406545 | MS.gene006937:CDS | 35.0% | |
TCAAATACTCTCTTGTAGTG+TGG | + | chr4.3:27406318-27406337 | MS.gene006937:CDS | 35.0% | |
TCTACCAAAAACTTGATCCT+CGG | - | chr4.3:27406793-27406812 | None:intergenic | 35.0% | |
TTTGAGTAGAGATGTGGATA+AGG | + | chr4.3:27406651-27406670 | MS.gene006937:CDS | 35.0% | |
! | CAACATGATGTGGTTTTTCA+AGG | + | chr4.3:27406033-27406052 | MS.gene006937:CDS | 35.0% |
! | GACCAAGTACAAGAATTTTG+GGG | - | chr4.3:27406210-27406229 | None:intergenic | 35.0% |
! | GAGACCAAGTACAAGAATTT+TGG | - | chr4.3:27406212-27406231 | None:intergenic | 35.0% |
! | TAGAGATGTGGATAAGGTTT+TGG | + | chr4.3:27406657-27406676 | MS.gene006937:CDS | 35.0% |
!! | ACACTACAAGAGAGTATTTG+AGG | - | chr4.3:27406319-27406338 | None:intergenic | 35.0% |
!! | AGTGTTGGTCTTGATAAAGA+CGG | + | chr4.3:27406484-27406503 | MS.gene006937:CDS | 35.0% |
!! | CACTACAAGAGAGTATTTGA+GGG | - | chr4.3:27406318-27406337 | None:intergenic | 35.0% |
!! | TTGAAGTTTGGCTTGTTAGA+AGG | + | chr4.3:27406970-27406989 | MS.gene006937:CDS | 35.0% |
!!! | GCGACACTAATTTTTTCTTC+AGG | - | chr4.3:27406873-27406892 | None:intergenic | 35.0% |
!!! | GGGCATTTTGAAACAATTGA+AGG | - | chr4.3:27406190-27406209 | None:intergenic | 35.0% |
ATAACAGCAGCAACATGATG+TGG | + | chr4.3:27406023-27406042 | MS.gene006937:CDS | 40.0% | |
ATAGCAGATGCAACTTCATG+AGG | - | chr4.3:27406286-27406305 | None:intergenic | 40.0% | |
CTAACAAGCCAAACTTCAAG+TGG | - | chr4.3:27406969-27406988 | None:intergenic | 40.0% | |
GACTTCAAAAACTCCGAAGT+AGG | - | chr4.3:27406577-27406596 | None:intergenic | 40.0% | |
GGTTAAGGACCCGTATATTA+TGG | + | chr4.3:27406525-27406544 | MS.gene006937:CDS | 40.0% | |
GTGTTGAGACATTCAACCAT+TGG | - | chr4.3:27406250-27406269 | None:intergenic | 40.0% | |
TAAAAGGCTTCGTCCTACTT+CGG | + | chr4.3:27406561-27406580 | MS.gene006937:CDS | 40.0% | |
TATCCATGCTTCTTTCGTCA+TGG | + | chr4.3:27406847-27406866 | MS.gene006937:CDS | 40.0% | |
TGAACGAGCGGATGAAAATT+GGG | + | chr4.3:27406126-27406145 | MS.gene006937:CDS | 40.0% | |
TGCCCCAAAATTCTTGTACT+TGG | + | chr4.3:27406205-27406224 | MS.gene006937:CDS | 40.0% | |
! | TAGCATTGAGACGAAGATGA+CGG | + | chr4.3:27406441-27406460 | MS.gene006937:CDS | 40.0% |
!! | AGAGAAGCTTTGTCCTCTTT+TGG | + | chr4.3:27406342-27406361 | MS.gene006937:CDS | 40.0% |
!! | CAAGAGTGTTCGGAATTCTT+TGG | + | chr4.3:27406765-27406784 | MS.gene006937:CDS | 40.0% |
!! | CAGATAGTTGATTTGGTGGT+TGG | + | chr4.3:27406724-27406743 | MS.gene006937:CDS | 40.0% |
!! | GTCGATTTTGAGTAGAGATG+TGG | + | chr4.3:27406645-27406664 | MS.gene006937:CDS | 40.0% |
!!! | ATGTGGTTTTTCAAGGACAG+AGG | + | chr4.3:27406040-27406059 | MS.gene006937:CDS | 40.0% |
!!! | TCGGAGTTTTTGAAGTCGAT+AGG | + | chr4.3:27406580-27406599 | MS.gene006937:CDS | 40.0% |
AGAACTGTGGATTTCATGGC+CGG | + | chr4.3:27406701-27406720 | MS.gene006937:CDS | 45.0% | |
CCACCAAATCAACTATCTGC+CGG | - | chr4.3:27406723-27406742 | None:intergenic | 45.0% | |
GGTGTGCCCGAAAAACAAAT+CGG | + | chr4.3:27406382-27406401 | MS.gene006937:CDS | 45.0% | |
GTGAACGAGCGGATGAAAAT+TGG | + | chr4.3:27406125-27406144 | MS.gene006937:CDS | 45.0% | |
GTGTGCCCGAAAAACAAATC+GGG | + | chr4.3:27406383-27406402 | MS.gene006937:CDS | 45.0% | |
TTGCAGCTTGAGTGAAATGC+TGG | + | chr4.3:27406924-27406943 | MS.gene006937:CDS | 45.0% | |
TTTGACTGAGCAGGATCTTC+AGG | + | chr4.3:27406603-27406622 | MS.gene006937:CDS | 45.0% | |
! | GGAACCGAGGATCAAGTTTT+TGG | + | chr4.3:27406786-27406805 | MS.gene006937:CDS | 45.0% |
!! | TTCGGAATTCTTTGGAACCG+AGG | + | chr4.3:27406773-27406792 | MS.gene006937:CDS | 45.0% |
AGGCCATGACGAAAGAAGCA+TGG | - | chr4.3:27406853-27406872 | None:intergenic | 50.0% | |
GGCACAAGCTCTTAAAGCAG+AGG | + | chr4.3:27406893-27406912 | MS.gene006937:CDS | 50.0% | |
GTCGATAGGTTTGACTGAGC+AGG | + | chr4.3:27406594-27406613 | MS.gene006937:CDS | 50.0% | |
TGGCCGGCAGATAGTTGATT+TGG | + | chr4.3:27406717-27406736 | MS.gene006937:CDS | 50.0% | |
!! | CCGGCAGATAGTTGATTTGG+TGG | + | chr4.3:27406720-27406739 | MS.gene006937:CDS | 50.0% |
GCTGCTGTTATTGCCGCTAC+TGG | - | chr4.3:27406014-27406033 | None:intergenic | 55.0% | |
GACAGCGCATCGTGAACGAG+CGG | + | chr4.3:27406114-27406133 | MS.gene006937:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 27406004 | 27407011 | 27406004 | ID=MS.gene006937 |
chr4.3 | mRNA | 27406004 | 27407011 | 27406004 | ID=MS.gene006937.t1;Parent=MS.gene006937 |
chr4.3 | exon | 27406004 | 27407011 | 27406004 | ID=MS.gene006937.t1.exon1;Parent=MS.gene006937.t1 |
chr4.3 | CDS | 27406004 | 27407011 | 27406004 | ID=cds.MS.gene006937.t1;Parent=MS.gene006937.t1 |
Gene Sequence |
Protein sequence |