AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039043

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039043.t1 MTR_2g067230 97.561 328 8 0 1 328 1 328 0.0 661
MS.gene039043.t1 MTR_0320s0040 85.246 122 18 0 36 157 15 136 9.59e-71 219
MS.gene039043.t1 MTR_2g049780 39.662 237 138 2 69 300 69 305 1.72e-57 188
MS.gene039043.t1 MTR_5g041630 36.508 252 151 3 60 304 48 297 5.34e-48 164
MS.gene039043.t1 MTR_7g081270 31.923 260 161 7 51 299 25 279 3.00e-33 124
MS.gene039043.t1 MTR_5g094610 26.639 244 161 6 70 296 227 469 1.94e-25 106
MS.gene039043.t1 MTR_4g070060 28.077 260 173 7 69 316 345 602 5.05e-23 100
MS.gene039043.t1 MTR_2g034600 29.464 224 146 5 87 303 268 486 1.59e-22 98.2
MS.gene039043.t1 MTR_2g034600 29.464 224 146 5 87 303 333 551 1.78e-22 98.2
MS.gene039043.t1 MTR_2g034600 29.464 224 146 5 87 303 329 547 1.85e-22 98.2
MS.gene039043.t1 MTR_6g003960 28.426 197 134 2 87 277 370 565 1.33e-21 95.9
MS.gene039043.t1 MTR_4g084630 26.966 178 121 2 129 300 145 319 1.01e-15 77.0
MS.gene039043.t1 MTR_5g068860 21.739 276 169 5 75 304 213 487 3.06e-15 76.6
MS.gene039043.t1 MTR_1g115415 23.373 338 166 12 75 326 145 475 7.33e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039043.t1 AT2G36000 55.985 259 110 3 70 324 74 332 1.48e-99 297
MS.gene039043.t1 AT2G36000 57.083 240 99 3 70 305 74 313 3.21e-94 283
MS.gene039043.t1 AT2G34620 40.000 240 139 2 69 303 55 294 5.05e-59 192
MS.gene039043.t1 AT2G03050 38.403 263 149 6 50 303 15 273 2.62e-53 177
MS.gene039043.t1 AT2G03050 38.403 263 149 6 50 303 14 272 3.03e-53 176
MS.gene039043.t1 AT3G18870 31.020 245 155 5 66 302 33 271 1.20e-34 127
MS.gene039043.t1 AT5G55580 25.926 243 164 6 70 296 114 356 1.49e-25 105
MS.gene039043.t1 AT5G55580 25.926 243 164 6 70 296 220 462 3.72e-25 105
MS.gene039043.t1 AT4G14605 26.033 242 170 5 66 300 229 468 2.02e-21 95.1
MS.gene039043.t1 AT4G14605 26.033 242 170 5 66 300 229 468 2.02e-21 95.1
MS.gene039043.t1 AT1G78930 27.619 210 144 3 75 277 344 552 6.58e-21 94.0
MS.gene039043.t1 AT2G21710 28.629 248 161 7 69 303 352 596 1.54e-19 89.7
MS.gene039043.t1 AT4G38160 25.106 235 163 6 55 277 65 298 1.35e-15 77.0
MS.gene039043.t1 AT4G38160 25.106 235 163 6 55 277 65 298 1.35e-15 77.0
MS.gene039043.t1 AT4G38160 25.106 235 163 6 55 277 65 298 1.48e-15 77.0
MS.gene039043.t1 AT4G38160 25.106 235 163 6 55 277 65 298 2.62e-15 76.3
MS.gene039043.t1 AT2G44020 23.134 268 159 8 89 311 203 468 7.34e-15 75.5
MS.gene039043.t1 AT4G02990 23.741 278 163 8 73 303 219 494 1.21e-12 68.9
MS.gene039043.t1 AT4G02990 23.741 278 163 8 73 303 219 494 1.21e-12 68.9

Find 79 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGTATTAAGAATAATT+TGG 0.227622 2.2:-24151826 MS.gene039043:CDS
TCTGCAAACCCTTTCATTCT+AGG 0.246141 2.2:-24154017 MS.gene039043:CDS
TCACTAGTCTTTAATAATAA+AGG 0.282485 2.2:+24151657 None:intergenic
CAGAGACGAGTGAAGGATTT+GGG 0.284020 2.2:+24154036 None:intergenic
ACCACAAAGTAATTGTATTT+AGG 0.292252 2.2:+24151801 None:intergenic
TGCAATTGAGTTTCGGCGTT+TGG 0.299697 2.2:-24152180 MS.gene039043:CDS
CAATTACTTTGTGGTGGAAA+TGG 0.302908 2.2:-24151793 MS.gene039043:CDS
ATCGAATACTTTGAAAATAT+CGG 0.309283 2.2:-24151903 MS.gene039043:CDS
GCAGAGACGAGTGAAGGATT+TGG 0.326298 2.2:+24154035 None:intergenic
ACATAAACGGTGTGTAGAAA+TGG 0.346811 2.2:-24151697 MS.gene039043:CDS
ATGTATTACAGGTTGTAAAA+TGG 0.349290 2.2:-24152382 MS.gene039043:intron
AATTACTTTGTGGTGGAAAT+GGG 0.364045 2.2:-24151792 MS.gene039043:CDS
TCTCATTTAGCTTAGAGAAT+AGG 0.372077 2.2:-24151731 MS.gene039043:CDS
CTACCTCCCAACACTGATAC+TGG 0.373802 2.2:-24152341 MS.gene039043:CDS
TTGGGAGGTAGAGTTTGATT+TGG 0.389507 2.2:+24152353 None:intergenic
ATTTCTCTGCAATTGAGTTT+CGG 0.390370 2.2:-24152187 MS.gene039043:CDS
CGACACTACATGATAGCAAA+TGG 0.394976 2.2:+24151946 None:intergenic
CTGCAAACCCTTTCATTCTA+GGG 0.396577 2.2:-24154016 MS.gene039043:CDS
CCTCTTCTATGCCAATACTT+TGG 0.410530 2.2:+24151982 None:intergenic
CCTTGAAAACATCTCCTTTG+TGG 0.416787 2.2:-24151587 MS.gene039043:CDS
ACTTTGGTGGTAAGAATCTC+CGG 0.437649 2.2:+24152146 None:intergenic
GGGTATAATGTCTGAGACTT+TGG 0.442292 2.2:+24152130 None:intergenic
GCGTTTGGTTGGCATGTGCC+CGG 0.446971 2.2:-24152165 MS.gene039043:CDS
TGGAAACCAGTATCAGTGTT+GGG 0.452228 2.2:+24152335 None:intergenic
TCCACAGTGGAATACATTAC+CGG 0.452556 2.2:-24152215 MS.gene039043:CDS
TCGTGAAGAATGGAAGGAAA+TGG 0.456886 2.2:+24153984 None:intergenic
CACCGAGAAGTTCGTGTAAG+TGG 0.461340 2.2:-24152092 MS.gene039043:CDS
AGCCACTTACACGAACTTCT+CGG 0.475846 2.2:+24152090 None:intergenic
ACATCTCCTTTGTGGTGTGC+TGG 0.485125 2.2:-24151579 MS.gene039043:CDS
CATAAACGGTGTGTAGAAAT+GGG 0.489419 2.2:-24151696 MS.gene039043:CDS
GCCTAAATACAATTACTTTG+TGG 0.489751 2.2:-24151802 MS.gene039043:CDS
AGAAGGTAGGTCGTGAAGAA+TGG 0.495056 2.2:+24153974 None:intergenic
CTTCTATGCCAATACTTTGG+AGG 0.495955 2.2:+24151985 None:intergenic
TATTGAAAATCATCCGAAGC+TGG 0.499544 2.2:-24152264 MS.gene039043:CDS
ATTGAGTTTCGGCGTTTGGT+TGG 0.499938 2.2:-24152176 MS.gene039043:CDS
GGATTAAGCCTCGACATAAA+CGG 0.510017 2.2:-24151710 MS.gene039043:CDS
CGGTGAAGGAACGTGAAGAC+GGG 0.516327 2.2:+24152110 None:intergenic
CTTTGGAGGAAGTACATAGT+AGG 0.519338 2.2:+24151999 None:intergenic
ATGTAATAAATCGTCGTCCT+CGG 0.520791 2.2:-24152055 MS.gene039043:CDS
AGTGACGCAGTAACCAGCTT+CGG 0.520879 2.2:+24152251 None:intergenic
GGAAATGGGGAGAGATTTGA+AGG 0.522542 2.2:-24151778 MS.gene039043:CDS
GTCTTTAATAATAAAGGAAG+AGG 0.522895 2.2:+24151663 None:intergenic
AGTAGGAACCCTAGAATGAA+AGG 0.529503 2.2:+24154008 None:intergenic
TACCTTCTTTGTCAGAGCTA+CGG 0.531441 2.2:-24153959 MS.gene039043:intron
TTGGAAACCAGTATCAGTGT+TGG 0.541510 2.2:+24152334 None:intergenic
TAAATACAATTACTTTGTGG+TGG 0.543115 2.2:-24151799 MS.gene039043:CDS
GAATGGAAGGAAATGGAAGT+AGG 0.544386 2.2:+24153991 None:intergenic
GGTAGGTCGTGAAGAATGGA+AGG 0.551426 2.2:+24153978 None:intergenic
GACACTACATGATAGCAAAT+GGG 0.553619 2.2:+24151947 None:intergenic
ATGTACTTCCTCCAAAGTAT+TGG 0.554399 2.2:-24151993 MS.gene039043:CDS
TCGGTGAAGGAACGTGAAGA+CGG 0.554418 2.2:+24152109 None:intergenic
AATTGCAGAGAAATCCATTC+CGG 0.562172 2.2:+24152196 None:intergenic
TTTGGGAATGTGGTGATCGG+TGG 0.563121 2.2:+24154053 None:intergenic
AAGCTAAATGAGAAATAATG+AGG 0.567357 2.2:+24151741 None:intergenic
GGATTTGGGAATGTGGTGAT+CGG 0.571770 2.2:+24154050 None:intergenic
TATAATGTCTGAGACTTTGG+TGG 0.577681 2.2:+24152133 None:intergenic
GTAGGAACCCTAGAATGAAA+GGG 0.583590 2.2:+24154009 None:intergenic
CTTTGGTGGTAAGAATCTCC+GGG 0.592939 2.2:+24152147 None:intergenic
GGGTTTGCAGAGACGAGTGA+AGG 0.596048 2.2:+24154029 None:intergenic
ATTACTTTGTGGTGGAAATG+GGG 0.596286 2.2:-24151791 MS.gene039043:CDS
GTGGTGATCGGTGGAAAACA+AGG 0.598610 2.2:+24154062 None:intergenic
TCTATACTTGATCAATATCA+CGG 0.599535 2.2:+24151556 None:intergenic
AACCGTAGCTCTGACAAAGA+AGG 0.600770 2.2:+24153957 None:intergenic
CCAAAGTATTGGCATAGAAG+AGG 0.600971 2.2:-24151982 MS.gene039043:CDS
TTACACGAACTTCTCGGTGA+AGG 0.604014 2.2:+24152096 None:intergenic
AGTGGAATACATTACCGGAA+TGG 0.608509 2.2:-24152210 MS.gene039043:CDS
TCTACACACCGTTTATGTCG+AGG 0.610087 2.2:+24151702 None:intergenic
ATACTATAACAAAACAGCTG+AGG 0.633616 2.2:+24151840 None:intergenic
AATGGGGAGAGATTTGAAGG+AGG 0.634987 2.2:-24151775 MS.gene039043:CDS
GTCTTGTATCTAGAATCTAT+CGG 0.638166 2.2:-24152305 MS.gene039043:CDS
GAGTGAAGGATTTGGGAATG+TGG 0.645827 2.2:+24154043 None:intergenic
TCACGGCCAGCACACCACAA+AGG 0.684243 2.2:+24151573 None:intergenic
GTAGCTCTGACAAAGAAGGT+AGG 0.686492 2.2:+24153961 None:intergenic
GAAACATCGATGTAGTGTCA+CGG 0.690841 2.2:+24151871 None:intergenic
TCCGGTAATGTATTCCACTG+TGG 0.695997 2.2:+24152214 None:intergenic
ACATTGCAAATGATCAACCG+AGG 0.728440 2.2:+24152038 None:intergenic
AAACCAGTATCAGTGTTGGG+AGG 0.731689 2.2:+24152338 None:intergenic
TGGTGATCGGTGGAAAACAA+GGG 0.748516 2.2:+24154063 None:intergenic
TGACGATATAAAATCCACAG+TGG 0.749902 2.2:-24152228 MS.gene039043:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCAATTCAATTAATAAA+AGG + chr2.2:24152338-24152357 None:intergenic 10.0%
!! TTATAGTATTAAGAATAATT+TGG - chr2.2:24153818-24153837 MS.gene039043:intron 10.0%
!!! ATAATTTAGTTTTTATTACT+GGG - chr2.2:24151904-24151923 MS.gene039043:CDS 10.0%
!! AACTATTAAAATCAACTAAA+AGG - chr2.2:24152409-24152428 MS.gene039043:intron 15.0%
!! AACTATTAAAATCAACTAAA+AGG + chr2.2:24152428-24152409 None:intergenic 15.0%
!!! AAATTTTCATTTTTCTTACT+GGG - chr2.2:24151734-24151753 MS.gene039043:CDS 15.0%
!!! AAGAATTTAGTTATGTTTTT+GGG - chr2.2:24152092-24152111 MS.gene039043:CDS 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG - chr2.2:24151818-24151837 MS.gene039043:CDS 15.0%
!!! AATTTGCTTATTTTTTGAAA+TGG - chr2.2:24152819-24152838 MS.gene039043:intron 15.0%
!!! ATTTTGCTTATTTTTTGAAA+CGG + chr2.2:24152739-24152758 None:intergenic 15.0%
!!! GATAATTTAGTTTTTATTAC+TGG - chr2.2:24151903-24151922 MS.gene039043:CDS 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr2.2:24152492-24152511 MS.gene039043:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + chr2.2:24152511-24152492 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - chr2.2:24152491-24152510 MS.gene039043:intron 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG + chr2.2:24152510-24152491 None:intergenic 15.0%
!!! TTTTCTTTTTATTTTGCTTT+GGG - chr2.2:24152172-24152191 MS.gene039043:CDS 15.0%
!!! TTTTTCTTTTTATTTTGCTT+TGG - chr2.2:24152171-24152190 MS.gene039043:CDS 15.0%
!! TGAAAATTTGAAGATTATTG+AGG + chr2.2:24151723-24151742 None:intergenic 20.0%
!! TTAATTTCATGCTTTAGTAA+AGG - chr2.2:24153163-24153182 MS.gene039043:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr2.2:24152748-24152767 MS.gene039043:intron 20.0%
!!! ATAAGCAAATTTCACTTTTT+AGG + chr2.2:24152810-24152829 None:intergenic 20.0%
!!! ATCGAATACTTTGAAAATAT+CGG - chr2.2:24153741-24153760 MS.gene039043:intron 20.0%
!!! ATTTTATTAACGGATGTAAA+TGG - chr2.2:24152582-24152601 MS.gene039043:intron 20.0%
!!! CAAATTTTCATTTTTCTTAC+TGG - chr2.2:24151733-24151752 MS.gene039043:CDS 20.0%
!!! CAAGAATTTAGTTATGTTTT+TGG - chr2.2:24152091-24152110 MS.gene039043:CDS 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG - chr2.2:24151817-24151836 MS.gene039043:CDS 20.0%
!!! TACTTTAGATTTTTCTTGAT+TGG - chr2.2:24151959-24151978 MS.gene039043:CDS 20.0%
!!! TATTTTCAAAGTATTCGATT+CGG + chr2.2:24153740-24153759 None:intergenic 20.0%
!!! TCACTAGTCTTTAATAATAA+AGG + chr2.2:24153990-24154009 None:intergenic 20.0%
!!! TTTCTTTTTATTTTGCTTTG+GGG - chr2.2:24152173-24152192 MS.gene039043:CDS 20.0%
!!! TTTGGTTAGGATTTTATTAA+CGG - chr2.2:24152572-24152591 MS.gene039043:intron 20.0%
! AAGCTAAATGAGAAATAATG+AGG + chr2.2:24153906-24153925 None:intergenic 25.0%
! ACATTATATTACAGTGTGTT+TGG - chr2.2:24152554-24152573 MS.gene039043:intron 25.0%
! ACCAAATTGACAAATAGTTT+AGG - chr2.2:24152515-24152534 MS.gene039043:intron 25.0%
! ACCACAAAGTAATTGTATTT+AGG + chr2.2:24153846-24153865 None:intergenic 25.0%
! AGTGCTTAAATCTTATTGAT+AGG - chr2.2:24152209-24152228 MS.gene039043:CDS 25.0%
! ATGTATTACAGGTTGTAAAA+TGG - chr2.2:24153262-24153281 MS.gene039043:intron 25.0%
! CAACAGAATTCAACAATAAA+CGG + chr2.2:24152123-24152142 None:intergenic 25.0%
! CAGTAAAGTTTATCATGTAA+CGG + chr2.2:24153094-24153113 None:intergenic 25.0%
! CCAAATTGACAAATAGTTTA+GGG - chr2.2:24152516-24152535 MS.gene039043:intron 25.0%
! GAAATTAATGTGCATTTAAC+AGG + chr2.2:24153151-24153170 None:intergenic 25.0%
! GCTTAATAATGCTAAAGTTT+AGG - chr2.2:24151762-24151781 MS.gene039043:CDS 25.0%
! GTCTTTAATAATAAAGGAAG+AGG + chr2.2:24153984-24154003 None:intergenic 25.0%
! GTGCTTAAATCTTATTGATA+GGG - chr2.2:24152210-24152229 MS.gene039043:CDS 25.0%
! TAAATACAATTACTTTGTGG+TGG - chr2.2:24153845-24153864 MS.gene039043:intron 25.0%
! TAATAGTTTAGGGACTAAAT+TGG + chr2.2:24152397-24152416 None:intergenic 25.0%
! TGCTTAAATCTTATTGATAG+GGG - chr2.2:24152211-24152230 MS.gene039043:CDS 25.0%
! TGTCAATAACATACTTTCTT+TGG - chr2.2:24153114-24153133 MS.gene039043:intron 25.0%
! TTAAGCACTTAAAAACCAAA+GGG + chr2.2:24152277-24152296 None:intergenic 25.0%
!!! ATTTTCAAAGTATTCGATTC+GGG + chr2.2:24153739-24153758 None:intergenic 25.0%
!!! CTATTATTCTAAGACATTGT+TGG - chr2.2:24152058-24152077 MS.gene039043:CDS 25.0%
!!! TGCTTATTTTTTGAAATGGA+GGG - chr2.2:24152823-24152842 MS.gene039043:intron 25.0%
!!! TTGCTTATTTTTTGAAATGG+AGG - chr2.2:24152822-24152841 MS.gene039043:intron 25.0%
AAAAACCTTAATCCTTCAAG+AGG + chr2.2:24152155-24152174 None:intergenic 30.0%
AACATAATTAAGCATAGACC+GGG + chr2.2:24151797-24151816 None:intergenic 30.0%
ACATAACTAAATTCTTGCCA+AGG + chr2.2:24152088-24152107 None:intergenic 30.0%
ATACTATAACAAAACAGCTG+AGG + chr2.2:24153807-24153826 None:intergenic 30.0%
ATATTACAGTGTGTTTGGTT+AGG - chr2.2:24152559-24152578 MS.gene039043:intron 30.0%
ATTAATGTGCATTTAACAGG+AGG + chr2.2:24153148-24153167 None:intergenic 30.0%
ATTTCTCTGCAATTGAGTTT+CGG - chr2.2:24153457-24153476 MS.gene039043:intron 30.0%
CCCTAAACTATTTGTCAATT+TGG + chr2.2:24152519-24152538 None:intergenic 30.0%
CTTAAGCACTTAAAAACCAA+AGG + chr2.2:24152278-24152297 None:intergenic 30.0%
GAACATAATTAAGCATAGAC+CGG + chr2.2:24151798-24151817 None:intergenic 30.0%
GCCTAAATACAATTACTTTG+TGG - chr2.2:24153842-24153861 MS.gene039043:intron 30.0%
GGAGTAAAAAACTTGATCAA+TGG - chr2.2:24152920-24152939 MS.gene039043:intron 30.0%
TAATGAATGATGCTCTAGTT+TGG - chr2.2:24151991-24152010 MS.gene039043:CDS 30.0%
TATACTCTCATCCATCAATT+TGG + chr2.2:24152458-24152477 None:intergenic 30.0%
TATTTGCTTGCATGTTGAAT+TGG - chr2.2:24153193-24153212 MS.gene039043:intron 30.0%
TGAAGATTATTGAGGTTGAA+AGG + chr2.2:24151715-24151734 None:intergenic 30.0%
! AATTACTTTGTGGTGGAAAT+GGG - chr2.2:24153852-24153871 MS.gene039043:intron 30.0%
! ATGGATGAGAGTATAGTTTA+AGG - chr2.2:24152463-24152482 MS.gene039043:intron 30.0%
! GTCTTGTATCTAGAATCTAT+CGG - chr2.2:24153339-24153358 MS.gene039043:intron 30.0%
! TCTCATTTAGCTTAGAGAAT+AGG - chr2.2:24153913-24153932 MS.gene039043:intron 30.0%
!! AAGTTTAGGTTTTTCTTACC+CGG - chr2.2:24151776-24151795 MS.gene039043:CDS 30.0%
!! TGATACTGGTTTCCAAAAAA+AGG - chr2.2:24153317-24153336 MS.gene039043:intron 30.0%
!! TTTTCAAAGTATTCGATTCG+GGG + chr2.2:24153738-24153757 None:intergenic 30.0%
!!! CTAGATACAAGACCTTTTTT+TGG + chr2.2:24153332-24153351 None:intergenic 30.0%
!!! CTTTGGTTTTTAAGTGCTTA+AGG - chr2.2:24152276-24152295 MS.gene039043:CDS 30.0%
!!! TGCTTATTTTTTGAAACGGA+GGG + chr2.2:24152735-24152754 None:intergenic 30.0%
!!! TTGCTTATTTTTTGAAACGG+AGG + chr2.2:24152736-24152755 None:intergenic 30.0%
AACAATAGTTGAGCAAAAGG+AGG + chr2.2:24152612-24152631 None:intergenic 35.0%
AATTGCAGAGAAATCCATTC+CGG + chr2.2:24153451-24153470 None:intergenic 35.0%
ACATAAACGGTGTGTAGAAA+TGG - chr2.2:24153947-24153966 MS.gene039043:intron 35.0%
ACTTGATCAATGGTTCACTT+AGG - chr2.2:24152930-24152949 MS.gene039043:intron 35.0%
ATGTAATAAATCGTCGTCCT+CGG - chr2.2:24153589-24153608 MS.gene039043:intron 35.0%
ATGTACTTCCTCCAAAGTAT+TGG - chr2.2:24153651-24153670 MS.gene039043:intron 35.0%
ATTAGACCAAGAAGCTATAG+AGG - chr2.2:24152899-24152918 MS.gene039043:intron 35.0%
CATAAACGGTGTGTAGAAAT+GGG - chr2.2:24153948-24153967 MS.gene039043:intron 35.0%
GAAAGCAATATGCATATCAG+AGG + chr2.2:24153039-24153058 None:intergenic 35.0%
GACACTACATGATAGCAAAT+GGG + chr2.2:24153700-24153719 None:intergenic 35.0%
GTCCATAAACTATACTCTCA+GGG - chr2.2:24152431-24152450 MS.gene039043:intron 35.0%
TATTGAAAATCATCCGAAGC+TGG - chr2.2:24153380-24153399 MS.gene039043:intron 35.0%
TCCAACAATAGTTGAGCAAA+AGG + chr2.2:24152615-24152634 None:intergenic 35.0%
TCTATAGCTTCTTGGTCTAA+TGG + chr2.2:24152900-24152919 None:intergenic 35.0%
TGACAAATAGTTTAGGGACT+AGG - chr2.2:24152522-24152541 MS.gene039043:intron 35.0%
TGACGATATAAAATCCACAG+TGG - chr2.2:24153416-24153435 MS.gene039043:intron 35.0%
TGGTGAGAGAGTGATAATTT+AGG + chr2.2:24152377-24152396 None:intergenic 35.0%
TTATTGATAGGGGAAATTGC+TGG - chr2.2:24152221-24152240 MS.gene039043:CDS 35.0%
TTGCTATCAGGATAGTTACA+CGG - chr2.2:24152303-24152322 MS.gene039043:CDS 35.0%
TTTACTCCTCTATAGCTTCT+TGG + chr2.2:24152908-24152927 None:intergenic 35.0%
! ATTACTTTGTGGTGGAAATG+GGG - chr2.2:24153853-24153872 MS.gene039043:intron 35.0%
! CAATTACTTTGTGGTGGAAA+TGG - chr2.2:24153851-24153870 MS.gene039043:intron 35.0%
! CACAAAGGAGATGTTTTCAA+GGG + chr2.2:24154059-24154078 None:intergenic 35.0%
! GCTGGTACATGATTGTATTT+TGG - chr2.2:24152239-24152258 MS.gene039043:CDS 35.0%
! TATAATGTCTGAGACTTTGG+TGG + chr2.2:24153514-24153533 None:intergenic 35.0%
! TCCTTTTGCTCAACTATTGT+TGG - chr2.2:24152611-24152630 MS.gene039043:intron 35.0%
ACATTGCAAATGATCAACCG+AGG + chr2.2:24153609-24153628 None:intergenic 40.0%
ACTCAGTAGTCAGTATAGGA+TGG + chr2.2:24153069-24153088 None:intergenic 40.0%
AGTAGGAACCCTAGAATGAA+AGG + chr2.2:24151639-24151658 None:intergenic 40.0%
AGTAGTCAGTATAGGATGGA+TGG + chr2.2:24153065-24153084 None:intergenic 40.0%
AGTGGAATACATTACCGGAA+TGG - chr2.2:24153434-24153453 MS.gene039043:intron 40.0%
CCTCTTCTATGCCAATACTT+TGG + chr2.2:24153665-24153684 None:intergenic 40.0%
CCTTGAAAACATCTCCTTTG+TGG - chr2.2:24154057-24154076 MS.gene039043:CDS 40.0%
CGACACTACATGATAGCAAA+TGG + chr2.2:24153701-24153720 None:intergenic 40.0%
CTGCAAACCCTTTCATTCTA+GGG - chr2.2:24151628-24151647 MS.gene039043:CDS 40.0%
CTGTGCTTCTGATGTATTAC+AGG - chr2.2:24153251-24153270 MS.gene039043:intron 40.0%
CTTCTATGCCAATACTTTGG+AGG + chr2.2:24153662-24153681 None:intergenic 40.0%
CTTTGCCTCTTGAAGGATTA+AGG - chr2.2:24152147-24152166 MS.gene039043:CDS 40.0%
GAAACATCGATGTAGTGTCA+CGG + chr2.2:24153776-24153795 None:intergenic 40.0%
GAATGGAAGGAAATGGAAGT+AGG + chr2.2:24151656-24151675 None:intergenic 40.0%
GCCACAGAGCATAAAACTAA+GGG + chr2.2:24152664-24152683 None:intergenic 40.0%
GGATACTCAGTAGTCAGTAT+AGG + chr2.2:24153073-24153092 None:intergenic 40.0%
GGATTAAGCCTCGACATAAA+CGG - chr2.2:24153934-24153953 MS.gene039043:intron 40.0%
GGTCCATAAACTATACTCTC+AGG - chr2.2:24152430-24152449 MS.gene039043:intron 40.0%
GTAGGAACCCTAGAATGAAA+GGG + chr2.2:24151638-24151657 None:intergenic 40.0%
GTAGTCAGTATAGGATGGAT+GGG + chr2.2:24153064-24153083 None:intergenic 40.0%
TACCTTCTTTGTCAGAGCTA+CGG - chr2.2:24151685-24151704 MS.gene039043:CDS 40.0%
TCCACAGTGGAATACATTAC+CGG - chr2.2:24153429-24153448 MS.gene039043:intron 40.0%
TCGTGAAGAATGGAAGGAAA+TGG + chr2.2:24151663-24151682 None:intergenic 40.0%
TCTGCAAACCCTTTCATTCT+AGG - chr2.2:24151627-24151646 MS.gene039043:CDS 40.0%
TGGAAACCAGTATCAGTGTT+GGG + chr2.2:24153312-24153331 None:intergenic 40.0%
TGGATAAAGTTGCTACCCTT+TGG - chr2.2:24152259-24152278 MS.gene039043:CDS 40.0%
TTGGAAACCAGTATCAGTGT+TGG + chr2.2:24153313-24153332 None:intergenic 40.0%
TTGGGAGGTAGAGTTTGATT+TGG + chr2.2:24153294-24153313 None:intergenic 40.0%
TTGTGTTCTTTGCCTCTTGA+AGG - chr2.2:24152140-24152159 MS.gene039043:CDS 40.0%
! AAGACATTGTTGGTTGTCCT+TGG - chr2.2:24152068-24152087 MS.gene039043:CDS 40.0%
! ACTTTGGTGGTAAGAATCTC+CGG + chr2.2:24153501-24153520 None:intergenic 40.0%
! ATGCTCTAGTTTGGCTGTTT+GGG - chr2.2:24152000-24152019 MS.gene039043:CDS 40.0%
! CCACAAAGGAGATGTTTTCA+AGG + chr2.2:24154060-24154079 None:intergenic 40.0%
! CTGTAATACATCAGAAGCAC+AGG + chr2.2:24153253-24153272 None:intergenic 40.0%
! CTTTGGAGGAAGTACATAGT+AGG + chr2.2:24153648-24153667 None:intergenic 40.0%
! GCTTAAGGATTCTTGCTATC+AGG - chr2.2:24152291-24152310 MS.gene039043:CDS 40.0%
! GGGTATAATGTCTGAGACTT+TGG + chr2.2:24153517-24153536 None:intergenic 40.0%
! GTCCCTGAGAGTATAGTTTA+TGG + chr2.2:24152436-24152455 None:intergenic 40.0%
!! CCAAAGTATTGGCATAGAAG+AGG - chr2.2:24153662-24153681 MS.gene039043:intron 40.0%
AATGGGGAGAGATTTGAAGG+AGG - chr2.2:24153869-24153888 MS.gene039043:intron 45.0%
ACCAGAGAACTGATATCACG+AGG + chr2.2:24153012-24153031 None:intergenic 45.0%
ACTCTCAGGGACCAAATTGA+TGG - chr2.2:24152444-24152463 MS.gene039043:intron 45.0%
AGAAGGTAGGTCGTGAAGAA+TGG + chr2.2:24151673-24151692 None:intergenic 45.0%
AGCCACTTACACGAACTTCT+CGG + chr2.2:24153557-24153576 None:intergenic 45.0%
ATCCCCCGTCGAAAGAATAA+GGG + chr2.2:24152694-24152713 None:intergenic 45.0%
ATTGAGTTTCGGCGTTTGGT+TGG - chr2.2:24153468-24153487 MS.gene039043:intron 45.0%
CAGAGACGAGTGAAGGATTT+GGG + chr2.2:24151611-24151630 None:intergenic 45.0%
CGCCACAGAGCATAAAACTA+AGG + chr2.2:24152665-24152684 None:intergenic 45.0%
GAGTGAAGGATTTGGGAATG+TGG + chr2.2:24151604-24151623 None:intergenic 45.0%
GGAAATGGGGAGAGATTTGA+AGG - chr2.2:24153866-24153885 MS.gene039043:intron 45.0%
GGATTTGGGAATGTGGTGAT+CGG + chr2.2:24151597-24151616 None:intergenic 45.0%
TCCGGTAATGTATTCCACTG+TGG + chr2.2:24153433-24153452 None:intergenic 45.0%
TCCTCGTGATATCAGTTCTC+TGG - chr2.2:24153008-24153027 MS.gene039043:intron 45.0%
TCTACACACCGTTTATGTCG+AGG + chr2.2:24153945-24153964 None:intergenic 45.0%
TGCAATTGAGTTTCGGCGTT+TGG - chr2.2:24153464-24153483 MS.gene039043:intron 45.0%
TGCGACCCTTATTCTTTCGA+CGG - chr2.2:24152686-24152705 MS.gene039043:intron 45.0%
TGGTGATCGGTGGAAAACAA+GGG + chr2.2:24151584-24151603 None:intergenic 45.0%
TTACACGAACTTCTCGGTGA+AGG + chr2.2:24153551-24153570 None:intergenic 45.0%
! AAACCAGTATCAGTGTTGGG+AGG + chr2.2:24153309-24153328 None:intergenic 45.0%
! CTTTGGTGGTAAGAATCTCC+GGG + chr2.2:24153500-24153519 None:intergenic 45.0%
! GATGCTCTAGTTTGGCTGTT+TGG - chr2.2:24151999-24152018 MS.gene039043:CDS 45.0%
!! AACCGTAGCTCTGACAAAGA+AGG + chr2.2:24151690-24151709 None:intergenic 45.0%
!! GTAGCTCTGACAAAGAAGGT+AGG + chr2.2:24151686-24151705 None:intergenic 45.0%
!!! GCCCTTAGTTTTATGCTCTG+TGG - chr2.2:24152660-24152679 MS.gene039043:intron 45.0%
ACATCTCCTTTGTGGTGTGC+TGG - chr2.2:24154065-24154084 MS.gene039043:CDS 50.0%
AGTGACGCAGTAACCAGCTT+CGG + chr2.2:24153396-24153415 None:intergenic 50.0%
CACCGAGAAGTTCGTGTAAG+TGG - chr2.2:24153552-24153571 MS.gene039043:intron 50.0%
CATCCCCCGTCGAAAGAATA+AGG + chr2.2:24152695-24152714 None:intergenic 50.0%
CGACCCTTATTCTTTCGACG+GGG - chr2.2:24152688-24152707 MS.gene039043:intron 50.0%
CTACCTCCCAACACTGATAC+TGG - chr2.2:24153303-24153322 MS.gene039043:intron 50.0%
GACCCTTATTCTTTCGACGG+GGG - chr2.2:24152689-24152708 MS.gene039043:intron 50.0%
GCAGAGACGAGTGAAGGATT+TGG + chr2.2:24151612-24151631 None:intergenic 50.0%
GCGACCCTTATTCTTTCGAC+GGG - chr2.2:24152687-24152706 MS.gene039043:intron 50.0%
GGTAGGTCGTGAAGAATGGA+AGG + chr2.2:24151669-24151688 None:intergenic 50.0%
GTGGTGATCGGTGGAAAACA+AGG + chr2.2:24151585-24151604 None:intergenic 50.0%
TCGGTGAAGGAACGTGAAGA+CGG + chr2.2:24153538-24153557 None:intergenic 50.0%
TTTGGGAATGTGGTGATCGG+TGG + chr2.2:24151594-24151613 None:intergenic 50.0%
CGGTGAAGGAACGTGAAGAC+GGG + chr2.2:24153537-24153556 None:intergenic 55.0%
GGGTTTGCAGAGACGAGTGA+AGG + chr2.2:24151618-24151637 None:intergenic 55.0%
GCGTTTGGTTGGCATGTGCC+CGG - chr2.2:24153479-24153498 MS.gene039043:intron 60.0%
TCACGGCCAGCACACCACAA+AGG + chr2.2:24154074-24154093 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 24151557 24154109 24151557 ID=MS.gene039043
chr2.2 mRNA 24151557 24154109 24151557 ID=MS.gene039043.t1;Parent=MS.gene039043
chr2.2 exon 24153960 24154109 24153960 ID=MS.gene039043.t1.exon1;Parent=MS.gene039043.t1
chr2.2 CDS 24153960 24154109 24153960 ID=cds.MS.gene039043.t1;Parent=MS.gene039043.t1
chr2.2 exon 24151557 24152393 24151557 ID=MS.gene039043.t1.exon2;Parent=MS.gene039043.t1
chr2.2 CDS 24151557 24152393 24151557 ID=cds.MS.gene039043.t1;Parent=MS.gene039043.t1
Gene Sequence

>MS.gene039043

ATGTGTTCTGCTACTGCTACAACACCCTTGTTTTCCACCGATCACCACATTCCCAAATCCTTCACTCGTCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCCATTTCCTTCCATTCTTCACGACCTACCTTCTTTGTCAGAGCTACGGTTAGCCTTTCAACCTCAATAATCTTCAAATTTTCATTTTTCTTACTGGGTCTCTGCTTAATAATGCTAAAGTTTAGGTTTTTCTTACCCGGTCTATGCTTAATTATGTTCAAGTTTTCATTTTTATTACTGGGTCTATTATGCTTAGTAATGCTCAAGTTTTCATTTTTATTACTGGGTTTATGCTTAATAGTGTGATAATTTAGTTTTTATTACTGGGTTAAGTATCTGCTTTATATTATAATAATGATCTACTTTAGATTTTTCTTGATTGGTTCTCTGATTAATGAATGATGCTCTAGTTTGGCTGTTTGGGTTTCTCTTACTTGTTTTTGCTTATTTGTGCAATAGCTATTATTCTAAGACATTGTTGGTTGTCCTTGGCAAGAATTTAGTTATGTTTTTGGGTCTTGCCGTTTATTGTTGAATTCTGTTGTGTTCTTTGCCTCTTGAAGGATTAAGGTTTTTTCTTTTTATTTTGCTTTGGGGTTGTTCATTTGAGAGTGCTTAAATCTTATTGATAGGGGAAATTGCTGGTACATGATTGTATTTTGGATAAAGTTGCTACCCTTTGGTTTTTAAGTGCTTAAGGATTCTTGCTATCAGGATAGTTACACGGTACACACGACCTTTTATTAATTGAATTGAATAAACATTCAATTTAGTTCCTAAATTATCACTCTCTCACCAATTTAGTCCCTAAACTATTAAAATCAACTAAAAGGTCCATAAACTATACTCTCAGGGACCAAATTGATGGATGAGAGTATAGTTTAAGGACCTTTTAGTTGATTTTAATAGTTTAGGGACCAAATTGACAAATAGTTTAGGGACTAGGACTAAATTGACATTATATTACAGTGTGTTTGGTTAGGATTTTATTAACGGATGTAAATGGAATTCCTCCTTTTGCTCAACTATTGTTGGAATTGTACAACATCTAATGCAAACAAGCCCTTAGTTTTATGCTCTGTGGCGATGCGACCCTTATTCTTTCGACGGGGGATGAGTTTTTATTTGTTACTCCCTCCGTTTCAAAAAATAAGCAAAATTCACTTTTTAGGTTCATTCATTTAATGATACATCATTAAATGAATGAACCTAAAAAGTGAAATTTGCTTATTTTTTGAAATGGAGGGAGTATGTGTTTAACATGTGTTTTTATAGCGTGTAACAAGTTCAAGCTATAGCCATTAGACCAAGAAGCTATAGAGGAGTAAAAAACTTGATCAATGGTTCACTTAGGATATTGACAGAAGAATTAATTTTAATGACAAGACTGTAATAGCAGTGACAAATTGTCCTCGTGATATCAGTTCTCTGGTTTAACCTCTGATATGCATATTGCTTTCGTCCCATCCATCCTATACTGACTACTGAGTATCCGTTACATGATAAACTTTACTGTGTCAATAACATACTTTCTTTGGTATTTTCGCCTCCTGTTAAATGCACATTAATTTCATGCTTTAGTAAAGGAATTAACTATTTGCTTGCATGTTGAATTGGTGATTAATAATTAATTATCGTCAGCTTGTAATTTCCTGTGCTTCTGATGTATTACAGGTTGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACACTGATACTGGTTTCCAAAAAAAGGTCTTGTATCTAGAATCTATCGGTATTGACTCTTTCTCATTTATTGAAAATCATCCGAAGCTGGTTACTGCGTCACTTGACGATATAAAATCCACAGTGGAATACATTACCGGAATGGATTTCTCTGCAATTGAGTTTCGGCGTTTGGTTGGCATGTGCCCGGAGATTCTTACCACCAAAGTCTCAGACATTATACCCGTCTTCACGTTCCTTCACCGAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGTCGTCCTCGGTTGATCATTTGCAATGTTGATAAGCAACTTCGTCCTACTATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATTTGCTATCATGTAGTGTCGAAGACAAGTTTATACCCCGAATCGAATACTTTGAAAATATCGGATTCTCTCGCCGTGACACTACATCGATGTTTCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAATTACTTTGTGGTGGAAATGGGGAGAGATTTGAAGGAGGTGAAAGAATTTCCTCATTATTTCTCATTTAGCTTAGAGAATAGGATTAAGCCTCGACATAAACGGTGTGTAGAAATGGGTGTGTGTTTTCCTCTTCCTTTATTATTAAAGACTAGTGAAGTTGCATTTCAGAATAGATTAGAAGCATTTGTAAATTCTTCAACACCCTTGAAAACATCTCCTTTGTGGTGTGCTGGCCGTGATATTGATCAAGTATAG
Protein sequence

>MS.gene039043.t1

MCSATATTPLFSTDHHIPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPNTDTGFQKKVLYLESIGIDSFSFIENHPKLVTASLDDIKSTVEYITGMDFSAIEFRRLVGMCPEILTTKVSDIIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKHTHLLSCSVEDKFIPRIEYFENIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYFVVEMGRDLKEVKEFPHYFSFSLENRIKPRHKRCVEMGVCFPLPLLLKTSEVAFQNRLEAFVNSSTPLKTSPLWCAGRDIDQV