AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007550.t1 MTR_7g102120 99.744 390 1 0 1 390 1 390 0.0 805
MS.gene007550.t1 MTR_1g063060 93.846 390 24 0 1 390 1 390 0.0 738
MS.gene007550.t1 MTR_1g063060 93.846 390 24 0 1 390 19 408 0.0 737
MS.gene007550.t1 MTR_2g046710 90.415 386 37 0 2 387 4 389 0.0 701
MS.gene007550.t1 MTR_7g110310 88.601 386 44 0 2 387 3 388 0.0 700
MS.gene007550.t1 MTR_4g123810 89.896 386 39 0 2 387 4 389 0.0 695
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007550.t1 AT2G36880 92.821 390 28 0 1 390 1 390 0.0 728
MS.gene007550.t1 AT2G36880 92.821 390 28 0 1 390 1 390 0.0 728
MS.gene007550.t1 AT3G17390 90.439 387 37 0 1 387 1 387 0.0 704
MS.gene007550.t1 AT4G01850 88.630 387 44 0 1 387 1 387 0.0 696
MS.gene007550.t1 AT4G01850 88.630 387 44 0 1 387 1 387 0.0 696
MS.gene007550.t1 AT1G02500 89.664 387 40 0 1 387 1 387 0.0 696
MS.gene007550.t1 AT1G02500 89.664 387 40 0 1 387 1 387 0.0 696

Find 105 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTGCATATGGCCATTT+TGG 0.193128 7.1:+9100284 MS.gene007550:CDS
CCATCTGGTCGGTTTGTTAT+TGG 0.197743 7.1:+9099891 MS.gene007550:CDS
TCACATGCAACCTTACTTTC+TGG 0.212828 7.1:-9099297 None:intergenic
CGAGACACTTGCAGAGGAAT+TGG 0.296576 7.1:+9099399 MS.gene007550:CDS
ACTAACATGGTTATGGTCTT+TGG 0.303812 7.1:+9099333 MS.gene007550:CDS
CACATGCAACCTTACTTTCT+GGG 0.310592 7.1:-9099296 None:intergenic
GGCCATATGCAGCAGTCTTT+TGG 0.329152 7.1:-9100277 None:intergenic
ACCTGATCACACAGCTTGTC+GGG 0.335375 7.1:-9099237 None:intergenic
CATGGAGGAGGTGCCTTCTC+TGG 0.336553 7.1:+9099984 MS.gene007550:CDS
CCCTGAAGCTACCACACTTT+TGG 0.336878 7.1:-9100060 None:intergenic
CCATGGCTCCGTTATCATTC+TGG 0.342771 7.1:-9099719 None:intergenic
GCCAAAAGTGTGGTAGCTTC+AGG 0.346842 7.1:+9100059 MS.gene007550:CDS
AGATTATTGGAAATCATTCC+TGG 0.346876 7.1:-9100224 None:intergenic
TCAAAAGAGGTGGCAACTTC+AGG 0.361522 7.1:+9100252 MS.gene007550:CDS
CAGGATCATCCCGTCCAAAA+TGG 0.362727 7.1:-9100298 None:intergenic
AGCTTGCTAACTCAAGCCTT+TGG 0.368398 7.1:-9100353 None:intergenic
CCACTTCTATCGACCTTGGT+TGG 0.382632 7.1:-9100014 None:intergenic
GGCTGGGGTGCTCATGGAGG+AGG 0.385528 7.1:+9099972 MS.gene007550:CDS
CTCATAGTTCACAGTAGCCT+TGG 0.390492 7.1:-9099367 None:intergenic
TGAACTCCTTGAGCGATATC+AGG 0.407674 7.1:-9099492 None:intergenic
CACTTCTATCGACCTTGGTT+GGG 0.408524 7.1:-9100013 None:intergenic
TATGGTGGCTGGGGTGCTCA+TGG 0.408565 7.1:+9099966 MS.gene007550:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.414240 7.1:+9100101 MS.gene007550:CDS
AATTCCAGACAAGGACATCT+TGG 0.414364 7.1:+9100172 MS.gene007550:CDS
TTTGTTGACACGTACAAAAC+AGG 0.414682 7.1:+9100146 MS.gene007550:CDS
ACAGTCTCCCAGGTGAAATC+AGG 0.423808 7.1:-9100317 None:intergenic
TACAAAGACTAACATGGTTA+TGG 0.436292 7.1:+9099326 MS.gene007550:CDS
TGCAAGACGTTGCATTGTGC+AGG 0.438573 7.1:+9100085 MS.gene007550:CDS
CCCCGACAAGCTGTGTGATC+AGG 0.440463 7.1:+9099236 MS.gene007550:CDS
GATATCGCTCAAGGAGTTCA+TGG 0.445977 7.1:+9099495 MS.gene007550:CDS
GCAGCAAGACCCAGAAAGTA+AGG 0.446581 7.1:+9099287 MS.gene007550:CDS
ACAAAACATGCGCATGGCTT+AGG 0.449886 7.1:+9099664 MS.gene007550:CDS
AGAACCAAGATGTCCTTGTC+TGG 0.450791 7.1:-9100176 None:intergenic
TCTGGTACTCAACAGTAACT+TGG 0.454448 7.1:-9099701 None:intergenic
TCTGGTCGGTTTGTTATTGG+TGG 0.458272 7.1:+9099894 MS.gene007550:CDS
GAAGTGGGGCATATATTGTT+AGG 0.460316 7.1:+9100030 MS.gene007550:CDS
GAGTATCTTGACAGTCTCCC+AGG 0.461385 7.1:-9100327 None:intergenic
TACCAAAAGACTGCTGCATA+TGG 0.464990 7.1:+9100275 MS.gene007550:CDS
ACAAATACAGAAAGTGGCTC+TGG 0.466173 7.1:-9100128 None:intergenic
TTTGTTATTGGTGGACCTCA+TGG 0.466434 7.1:+9099903 MS.gene007550:CDS
AGGACAGTGTGCACACGGAT+TGG 0.468164 7.1:-9099744 None:intergenic
TCACCAGCACCAATTTCCTC+TGG 0.468785 7.1:-9099534 None:intergenic
AACCTGATCACACAGCTTGT+CGG 0.469901 7.1:-9099238 None:intergenic
ATCTTCCATCTCAATCCATC+TGG 0.470979 7.1:+9099876 MS.gene007550:CDS
GGACAGTGTGCACACGGATT+GGG 0.473091 7.1:-9099743 None:intergenic
CCAAAAGTGTGGTAGCTTCA+GGG 0.478895 7.1:+9100060 MS.gene007550:CDS
TTATTGACACCTATGGTGGC+TGG 0.480591 7.1:+9099955 MS.gene007550:CDS
GGTGACCAAGGTCACATGTT+TGG 0.484772 7.1:+9099552 MS.gene007550:CDS
GGTTGGGTCCTTGCCAGAGA+AGG 0.492679 7.1:-9099997 None:intergenic
TATTGACACCTATGGTGGCT+GGG 0.497719 7.1:+9099956 MS.gene007550:CDS
TGGGTAAGTGGCATTAGCTC+AGG 0.517740 7.1:-9099594 None:intergenic
CTGGTACTCAACAGTAACTT+GGG 0.520651 7.1:-9099700 None:intergenic
GGAAGATAGTCTTGTCATCA+AGG 0.520901 7.1:-9099860 None:intergenic
GTGTCAACAAATACAGAAAG+TGG 0.521583 7.1:-9100134 None:intergenic
GGTGGACCTCATGGAGATGC+AGG 0.523297 7.1:+9099912 MS.gene007550:CDS
AAGATCATTATTGACACCTA+TGG 0.523504 7.1:+9099948 MS.gene007550:CDS
CATGGAGATGCAGGACTCAC+TGG 0.526918 7.1:+9099921 MS.gene007550:CDS
CGAGTTTAGTAGCAAGCACA+TGG 0.527337 7.1:-9099614 None:intergenic
AATAATCTTGACCTCAAAAG+AGG 0.536379 7.1:+9100239 MS.gene007550:CDS
CATGTGCTTGCTACTAAACT+CGG 0.541932 7.1:+9099615 MS.gene007550:CDS
TGCCCCACTTCTATCGACCT+TGG 0.546010 7.1:-9100018 None:intergenic
AAACCAGAGGAAATTGGTGC+TGG 0.551112 7.1:+9099531 MS.gene007550:CDS
GGGATGATCCTGATTTCACC+TGG 0.551255 7.1:+9100309 MS.gene007550:CDS
TGCGCATGGCTTAGGCCTGA+TGG 0.560731 7.1:+9099672 MS.gene007550:CDS
TAGCTCAGGTGTTTCATCTG+TGG 0.560925 7.1:-9099580 None:intergenic
GGTGGCTGGGGTGCTCATGG+AGG 0.565014 7.1:+9099969 MS.gene007550:CDS
GTAGCAAGCACATGGGTAAG+TGG 0.569064 7.1:-9099606 None:intergenic
GAAATTGGTGCTGGTGACCA+AGG 0.570337 7.1:+9099540 MS.gene007550:CDS
GTTGAGTACCAGAATGATAA+CGG 0.575092 7.1:+9099711 MS.gene007550:CDS
ATGAGCACCCCAGCCACCAT+AGG 0.576048 7.1:-9099964 None:intergenic
CAAATACAGAAAGTGGCTCT+GGG 0.576109 7.1:-9100127 None:intergenic
TCCATCTCAATCCATCTGGT+CGG 0.577302 7.1:+9099880 MS.gene007550:CDS
CTGCAAACATGCATCAAGGA+TGG 0.580545 7.1:-9099268 None:intergenic
GTGCACACGGATTGGGACCA+TGG 0.581365 7.1:-9099736 None:intergenic
CATAGCCAAACATGTGACCT+TGG 0.582504 7.1:-9099557 None:intergenic
ATTGACACCTATGGTGGCTG+GGG 0.585915 7.1:+9099957 MS.gene007550:CDS
TGACAGATTCTGAGGTGAAG+AGG 0.586047 7.1:-9099203 None:intergenic
CAACCAAGGTCGATAGAAGT+GGG 0.589471 7.1:+9100015 MS.gene007550:CDS
AGGAGGTGCCTTCTCTGGCA+AGG 0.599631 7.1:+9099989 MS.gene007550:CDS
CCAACCAAGGTCGATAGAAG+TGG 0.601493 7.1:+9100014 MS.gene007550:CDS
ACCTTCGTTGACAGATTCTG+AGG 0.606247 7.1:-9099211 None:intergenic
ATCATTATTGACACCTATGG+TGG 0.611359 7.1:+9099951 MS.gene007550:CDS
CTTGCTGCAAACATGCATCA+AGG 0.611540 7.1:-9099272 None:intergenic
CCAATAACAAACCGACCAGA+TGG 0.611757 7.1:-9099891 None:intergenic
AGATGAGGACAGTGTGCACA+CGG 0.613951 7.1:-9099749 None:intergenic
CATCGTGCTGAGTTGAGATG+AGG 0.617276 7.1:-9099764 None:intergenic
ACCGACCAGATGGATTGAGA+TGG 0.617816 7.1:-9099881 None:intergenic
CCAGAATGATAACGGAGCCA+TGG 0.619445 7.1:+9099719 MS.gene007550:CDS
GGATTCGTATCAGCTGATGT+TGG 0.619951 7.1:+9099420 MS.gene007550:CDS
CAGAGTCCTGATATCGCTCA+AGG 0.622943 7.1:+9099486 MS.gene007550:CDS
GAAAGAACAAAACATGCGCA+TGG 0.625968 7.1:+9099658 MS.gene007550:CDS
AATCTTGACCTCAAAAGAGG+TGG 0.633225 7.1:+9100242 MS.gene007550:CDS
CTCTGGCAAGGACCCAACCA+AGG 0.634793 7.1:+9100001 MS.gene007550:CDS
GAGATGCAGGACTCACTGGT+AGG 0.648576 7.1:+9099925 MS.gene007550:CDS
ACCTCAGAATCTGTCAACGA+AGG 0.652365 7.1:+9099210 MS.gene007550:CDS
CCTGATCACACAGCTTGTCG+GGG 0.668924 7.1:-9099236 None:intergenic
GGATGATCCTGATTTCACCT+GGG 0.669087 7.1:+9100310 MS.gene007550:CDS
TGTCAAGATACTCAAGCCAA+AGG 0.679722 7.1:+9100337 MS.gene007550:CDS
ATAGTTCGAGACACTTGCAG+AGG 0.698300 7.1:+9099393 MS.gene007550:CDS
AACCAAGGTCGATAGAAGTG+GGG 0.698373 7.1:+9100016 MS.gene007550:CDS
CTTTGGTGAGATAACAACCA+AGG 0.702167 7.1:+9099350 MS.gene007550:CDS
TAGGCAAGCAGCCAAAAGTG+TGG 0.702229 7.1:+9100049 MS.gene007550:CDS
GTGAGTCCTGCATCTCCATG+AGG 0.711004 7.1:-9099918 None:intergenic
GAGTTTAGTAGCAAGCACAT+GGG 0.722855 7.1:-9099613 None:intergenic
GACATGTACAAAGACTAACA+TGG 0.784188 7.1:+9099320 MS.gene007550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGATCATTATTGACACCTA+TGG + chr7.1:9099948-9099967 MS.gene007550:CDS 30.0%
AATAATCTTGACCTCAAAAG+AGG + chr7.1:9100239-9100258 MS.gene007550:CDS 30.0%
AGATTATTGGAAATCATTCC+TGG - chr7.1:9100227-9100246 None:intergenic 30.0%
TACAAAGACTAACATGGTTA+TGG + chr7.1:9099326-9099345 MS.gene007550:CDS 30.0%
!!! TCTTTTGAGGTCAAGATTAT+TGG - chr7.1:9100240-9100259 None:intergenic 30.0%
!!! TTAAAGAGCATTTTGACTTC+AGG + chr7.1:9100201-9100220 MS.gene007550:CDS 30.0%
AACAGGAAAAATTCCAGACA+AGG + chr7.1:9100163-9100182 MS.gene007550:CDS 35.0%
ACCAAAAAACCAGAGGAAAT+TGG + chr7.1:9099525-9099544 MS.gene007550:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG + chr7.1:9099333-9099352 MS.gene007550:CDS 35.0%
ATCATTATTGACACCTATGG+TGG + chr7.1:9099951-9099970 MS.gene007550:CDS 35.0%
GACATGTACAAAGACTAACA+TGG + chr7.1:9099320-9099339 MS.gene007550:CDS 35.0%
GTGTCAACAAATACAGAAAG+TGG - chr7.1:9100137-9100156 None:intergenic 35.0%
GTTGAGTACCAGAATGATAA+CGG + chr7.1:9099711-9099730 MS.gene007550:CDS 35.0%
TTTGTTGACACGTACAAAAC+AGG + chr7.1:9100146-9100165 MS.gene007550:CDS 35.0%
!! TGTCATCAAGGTATTTTGCT+GGG - chr7.1:9099851-9099870 None:intergenic 35.0%
!! TTGTCATCAAGGTATTTTGC+TGG - chr7.1:9099852-9099871 None:intergenic 35.0%
!!! ACCAATTTCCTCTGGTTTTT+TGG - chr7.1:9099529-9099548 None:intergenic 35.0%
AATCTTGACCTCAAAAGAGG+TGG + chr7.1:9100242-9100261 MS.gene007550:CDS 40.0%
AATTCCAGACAAGGACATCT+TGG + chr7.1:9100172-9100191 MS.gene007550:CDS 40.0%
ACAAATACAGAAAGTGGCTC+TGG - chr7.1:9100131-9100150 None:intergenic 40.0%
ATCTTCCATCTCAATCCATC+TGG + chr7.1:9099876-9099895 MS.gene007550:CDS 40.0%
CAAATACAGAAAGTGGCTCT+GGG - chr7.1:9100130-9100149 None:intergenic 40.0%
CACATGCAACCTTACTTTCT+GGG - chr7.1:9099299-9099318 None:intergenic 40.0%
CTGGTACTCAACAGTAACTT+GGG - chr7.1:9099703-9099722 None:intergenic 40.0%
CTTTGGTGAGATAACAACCA+AGG + chr7.1:9099350-9099369 MS.gene007550:CDS 40.0%
GAAAGAACAAAACATGCGCA+TGG + chr7.1:9099658-9099677 MS.gene007550:CDS 40.0%
GAAGTGGGGCATATATTGTT+AGG + chr7.1:9100030-9100049 MS.gene007550:CDS 40.0%
GAGTTTAGTAGCAAGCACAT+GGG - chr7.1:9099616-9099635 None:intergenic 40.0%
GTGCAGGTTTCTTATGCAAT+TGG + chr7.1:9100101-9100120 MS.gene007550:CDS 40.0%
TACCAAAAGACTGCTGCATA+TGG + chr7.1:9100275-9100294 MS.gene007550:CDS 40.0%
TCACATGCAACCTTACTTTC+TGG - chr7.1:9099300-9099319 None:intergenic 40.0%
TCACTTGACCAAAAAACCAG+AGG + chr7.1:9099518-9099537 MS.gene007550:CDS 40.0%
TCTGGTACTCAACAGTAACT+TGG - chr7.1:9099704-9099723 None:intergenic 40.0%
TGTCAAGATACTCAAGCCAA+AGG + chr7.1:9100337-9100356 MS.gene007550:CDS 40.0%
! CATGTGCTTGCTACTAAACT+CGG + chr7.1:9099615-9099634 MS.gene007550:CDS 40.0%
! GTAACTTGGGTTTTACCATC+AGG - chr7.1:9099690-9099709 None:intergenic 40.0%
!! GGAAGATAGTCTTGTCATCA+AGG - chr7.1:9099863-9099882 None:intergenic 40.0%
!! TTTGTTATTGGTGGACCTCA+TGG + chr7.1:9099903-9099922 MS.gene007550:CDS 40.0%
AAACCAGAGGAAATTGGTGC+TGG + chr7.1:9099531-9099550 MS.gene007550:CDS 45.0%
AACCAAGGTCGATAGAAGTG+GGG + chr7.1:9100016-9100035 MS.gene007550:CDS 45.0%
AACCTGATCACACAGCTTGT+CGG - chr7.1:9099241-9099260 None:intergenic 45.0%
ACAAAACATGCGCATGGCTT+AGG + chr7.1:9099664-9099683 MS.gene007550:CDS 45.0%
ACCTCAGAATCTGTCAACGA+AGG + chr7.1:9099210-9099229 MS.gene007550:CDS 45.0%
ACCTTCGTTGACAGATTCTG+AGG - chr7.1:9099214-9099233 None:intergenic 45.0%
AGAACCAAGATGTCCTTGTC+TGG - chr7.1:9100179-9100198 None:intergenic 45.0%
ATAGTTCGAGACACTTGCAG+AGG + chr7.1:9099393-9099412 MS.gene007550:CDS 45.0%
CAACCAAGGTCGATAGAAGT+GGG + chr7.1:9100015-9100034 MS.gene007550:CDS 45.0%
CACTTCTATCGACCTTGGTT+GGG - chr7.1:9100016-9100035 None:intergenic 45.0%
CATAGCCAAACATGTGACCT+TGG - chr7.1:9099560-9099579 None:intergenic 45.0%
CCAATAACAAACCGACCAGA+TGG - chr7.1:9099894-9099913 None:intergenic 45.0%
CGAGTTTAGTAGCAAGCACA+TGG - chr7.1:9099617-9099636 None:intergenic 45.0%
CTCATAGTTCACAGTAGCCT+TGG - chr7.1:9099370-9099389 None:intergenic 45.0%
CTGCAAACATGCATCAAGGA+TGG - chr7.1:9099271-9099290 None:intergenic 45.0%
CTTGCTGCAAACATGCATCA+AGG - chr7.1:9099275-9099294 None:intergenic 45.0%
GATATCGCTCAAGGAGTTCA+TGG + chr7.1:9099495-9099514 MS.gene007550:CDS 45.0%
GGATGATCCTGATTTCACCT+GGG + chr7.1:9100310-9100329 MS.gene007550:CDS 45.0%
GGATTCGTATCAGCTGATGT+TGG + chr7.1:9099420-9099439 MS.gene007550:CDS 45.0%
TAGCTCAGGTGTTTCATCTG+TGG - chr7.1:9099583-9099602 None:intergenic 45.0%
TATTGACACCTATGGTGGCT+GGG + chr7.1:9099956-9099975 MS.gene007550:CDS 45.0%
TCAAAAGAGGTGGCAACTTC+AGG + chr7.1:9100252-9100271 MS.gene007550:CDS 45.0%
TCCATCTCAATCCATCTGGT+CGG + chr7.1:9099880-9099899 MS.gene007550:CDS 45.0%
TGAACTCCTTGAGCGATATC+AGG - chr7.1:9099495-9099514 None:intergenic 45.0%
TTATTGACACCTATGGTGGC+TGG + chr7.1:9099955-9099974 MS.gene007550:CDS 45.0%
! ACTGCTGCATATGGCCATTT+TGG + chr7.1:9100284-9100303 MS.gene007550:CDS 45.0%
! CCAAAAGTGTGGTAGCTTCA+GGG + chr7.1:9100060-9100079 MS.gene007550:CDS 45.0%
! TGAAGTTGCCACCTCTTTTG+AGG - chr7.1:9100253-9100272 None:intergenic 45.0%
!! CCATCTGGTCGGTTTGTTAT+TGG + chr7.1:9099891-9099910 MS.gene007550:CDS 45.0%
!! CTGCATATGGCCATTTTGGA+CGG + chr7.1:9100288-9100307 MS.gene007550:CDS 45.0%
!! TCTGGTCGGTTTGTTATTGG+TGG + chr7.1:9099894-9099913 MS.gene007550:CDS 45.0%
!! TGACAGATTCTGAGGTGAAG+AGG - chr7.1:9099206-9099225 None:intergenic 45.0%
!! TGCATATGGCCATTTTGGAC+GGG + chr7.1:9100289-9100308 MS.gene007550:CDS 45.0%
ACAGTCTCCCAGGTGAAATC+AGG - chr7.1:9100320-9100339 None:intergenic 50.0%
ACCTGATCACACAGCTTGTC+GGG - chr7.1:9099240-9099259 None:intergenic 50.0%
AGATGAGGACAGTGTGCACA+CGG - chr7.1:9099752-9099771 None:intergenic 50.0%
ATTGACACCTATGGTGGCTG+GGG + chr7.1:9099957-9099976 MS.gene007550:CDS 50.0%
CAGAGTCCTGATATCGCTCA+AGG + chr7.1:9099486-9099505 MS.gene007550:CDS 50.0%
CAGGATCATCCCGTCCAAAA+TGG - chr7.1:9100301-9100320 None:intergenic 50.0%
CCAACCAAGGTCGATAGAAG+TGG + chr7.1:9100014-9100033 MS.gene007550:CDS 50.0%
CCACTTCTATCGACCTTGGT+TGG - chr7.1:9100017-9100036 None:intergenic 50.0%
CCATGGCTCCGTTATCATTC+TGG - chr7.1:9099722-9099741 None:intergenic 50.0%
CGAGACACTTGCAGAGGAAT+TGG + chr7.1:9099399-9099418 MS.gene007550:CDS 50.0%
GAGTATCTTGACAGTCTCCC+AGG - chr7.1:9100330-9100349 None:intergenic 50.0%
GCAGCAAGACCCAGAAAGTA+AGG + chr7.1:9099287-9099306 MS.gene007550:CDS 50.0%
GGGATGATCCTGATTTCACC+TGG + chr7.1:9100309-9100328 MS.gene007550:CDS 50.0%
GGTGACCAAGGTCACATGTT+TGG + chr7.1:9099552-9099571 MS.gene007550:CDS 50.0%
GTAGCAAGCACATGGGTAAG+TGG - chr7.1:9099609-9099628 None:intergenic 50.0%
TAGGCAAGCAGCCAAAAGTG+TGG + chr7.1:9100049-9100068 MS.gene007550:CDS 50.0%
TCACCAGCACCAATTTCCTC+TGG - chr7.1:9099537-9099556 None:intergenic 50.0%
TGCAAGACGTTGCATTGTGC+AGG + chr7.1:9100085-9100104 MS.gene007550:CDS 50.0%
TGGGTAAGTGGCATTAGCTC+AGG - chr7.1:9099597-9099616 None:intergenic 50.0%
! CATCGTGCTGAGTTGAGATG+AGG - chr7.1:9099767-9099786 None:intergenic 50.0%
! CCCTGAAGCTACCACACTTT+TGG - chr7.1:9100063-9100082 None:intergenic 50.0%
! GCCAAAAGTGTGGTAGCTTC+AGG + chr7.1:9100059-9100078 MS.gene007550:CDS 50.0%
! GGCCATATGCAGCAGTCTTT+TGG - chr7.1:9100280-9100299 None:intergenic 50.0%
!! ACCGACCAGATGGATTGAGA+TGG - chr7.1:9099884-9099903 None:intergenic 50.0%
!! CCAGAATGATAACGGAGCCA+TGG + chr7.1:9099719-9099738 MS.gene007550:CDS 50.0%
!! GAAATTGGTGCTGGTGACCA+AGG + chr7.1:9099540-9099559 MS.gene007550:CDS 50.0%
!!! GAGCATTTTGACTTCAGGCC+AGG + chr7.1:9100206-9100225 MS.gene007550:CDS 50.0%
AGGACAGTGTGCACACGGAT+TGG - chr7.1:9099747-9099766 None:intergenic 55.0%
CATGGAGATGCAGGACTCAC+TGG + chr7.1:9099921-9099940 MS.gene007550:CDS 55.0%
CCTGATCACACAGCTTGTCG+GGG - chr7.1:9099239-9099258 None:intergenic 55.0%
GAGATGCAGGACTCACTGGT+AGG + chr7.1:9099925-9099944 MS.gene007550:CDS 55.0%
GGACAGTGTGCACACGGATT+GGG - chr7.1:9099746-9099765 None:intergenic 55.0%
GTGAGTCCTGCATCTCCATG+AGG - chr7.1:9099921-9099940 None:intergenic 55.0%
TGCCCCACTTCTATCGACCT+TGG - chr7.1:9100021-9100040 None:intergenic 55.0%
ATGAGCACCCCAGCCACCAT+AGG - chr7.1:9099967-9099986 None:intergenic 60.0%
CCCCGACAAGCTGTGTGATC+AGG + chr7.1:9099236-9099255 MS.gene007550:CDS 60.0%
CTCTGGCAAGGACCCAACCA+AGG + chr7.1:9100001-9100020 MS.gene007550:CDS 60.0%
GGTGGACCTCATGGAGATGC+AGG + chr7.1:9099912-9099931 MS.gene007550:CDS 60.0%
GGTTGGGTCCTTGCCAGAGA+AGG - chr7.1:9100000-9100019 None:intergenic 60.0%
TGCGCATGGCTTAGGCCTGA+TGG + chr7.1:9099672-9099691 MS.gene007550:CDS 60.0%
! TATGGTGGCTGGGGTGCTCA+TGG + chr7.1:9099966-9099985 MS.gene007550:CDS 60.0%
!! AGGAGGTGCCTTCTCTGGCA+AGG + chr7.1:9099989-9100008 MS.gene007550:CDS 60.0%
!! CATGGAGGAGGTGCCTTCTC+TGG + chr7.1:9099984-9100003 MS.gene007550:CDS 60.0%
!! GTGCACACGGATTGGGACCA+TGG - chr7.1:9099739-9099758 None:intergenic 60.0%
! GGCTGGGGTGCTCATGGAGG+AGG + chr7.1:9099972-9099991 MS.gene007550:CDS 70.0%
! GGTGGCTGGGGTGCTCATGG+AGG + chr7.1:9099969-9099988 MS.gene007550:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 9099192 9100364 9099192 ID=MS.gene007550
chr7.1 mRNA 9099192 9100364 9099192 ID=MS.gene007550.t1;Parent=MS.gene007550
chr7.1 exon 9099192 9100364 9099192 ID=MS.gene007550.t1.exon1;Parent=MS.gene007550.t1
chr7.1 CDS 9099192 9100364 9099192 ID=cds.MS.gene007550.t1;Parent=MS.gene007550.t1
Gene Sequence

>MS.gene007550

ATGGAAACTTTCCTCTTCACCTCAGAATCTGTCAACGAAGGTCACCCCGACAAGCTGTGTGATCAGGTTTCAGATGCCATCCTTGATGCATGTTTGCAGCAAGACCCAGAAAGTAAGGTTGCATGTGAGACATGTACAAAGACTAACATGGTTATGGTCTTTGGTGAGATAACAACCAAGGCTACTGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGAGGAATTGGATTCGTATCAGCTGATGTTGGTCTTGATGCTGATAACTGCAAAGTTCTTGTCAACATTGAGCAACAGAGTCCTGATATCGCTCAAGGAGTTCATGGTCACTTGACCAAAAAACCAGAGGAAATTGGTGCTGGTGACCAAGGTCACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTAATGCCACTTACCCATGTGCTTGCTACTAAACTCGGTGCAAAGCTCACTGAAGTTAGAAAGAACAAAACATGCGCATGGCTTAGGCCTGATGGTAAAACCCAAGTTACTGTTGAGTACCAGAATGATAACGGAGCCATGGTCCCAATCCGTGTGCACACTGTCCTCATCTCAACTCAGCACGATGAAACTGTCACAAATGAAAAAATTGCTGCAGATTTAAAAGAGCATGTGATTAAACTTGTTATCCCAGCAAAATACCTTGATGACAAGACTATCTTCCATCTCAATCCATCTGGTCGGTTTGTTATTGGTGGACCTCATGGAGATGCAGGACTCACTGGTAGGAAGATCATTATTGACACCTATGGTGGCTGGGGTGCTCATGGAGGAGGTGCCTTCTCTGGCAAGGACCCAACCAAGGTCGATAGAAGTGGGGCATATATTGTTAGGCAAGCAGCCAAAAGTGTGGTAGCTTCAGGGCTTGCAAGACGTTGCATTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCACTTTCTGTATTTGTTGACACGTACAAAACAGGAAAAATTCCAGACAAGGACATCTTGGTTCTTATTAAAGAGCATTTTGACTTCAGGCCAGGAATGATTTCCAATAATCTTGACCTCAAAAGAGGTGGCAACTTCAGGTACCAAAAGACTGCTGCATATGGCCATTTTGGACGGGATGATCCTGATTTCACCTGGGAGACTGTCAAGATACTCAAGCCAAAGGCTTGA
Protein sequence

>MS.gene007550.t1

METFLFTSESVNEGHPDKLCDQVSDAILDACLQQDPESKVACETCTKTNMVMVFGEITTKATVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCAWLRPDGKTQVTVEYQNDNGAMVPIRVHTVLISTQHDETVTNEKIAADLKEHVIKLVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKEHFDFRPGMISNNLDLKRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPKA