AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28651

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28651.t1 MTR_7g110310 100.000 394 0 0 1 394 1 394 0.0 818
MS.gene28651.t1 MTR_2g046710 93.573 389 25 0 3 391 4 392 0.0 739
MS.gene28651.t1 MTR_4g123810 92.821 390 28 0 2 391 3 392 0.0 738
MS.gene28651.t1 MTR_7g102120 88.860 386 43 0 3 388 2 387 0.0 704
MS.gene28651.t1 MTR_1g063060 86.788 386 51 0 3 388 2 387 0.0 694
MS.gene28651.t1 MTR_1g063060 86.788 386 51 0 3 388 20 405 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28651.t1 AT4G01850 92.347 392 30 0 3 394 2 393 0.0 745
MS.gene28651.t1 AT4G01850 92.347 392 30 0 3 394 2 393 0.0 745
MS.gene28651.t1 AT1G02500 92.857 392 28 0 3 394 2 393 0.0 744
MS.gene28651.t1 AT1G02500 92.857 392 28 0 3 394 2 393 0.0 744
MS.gene28651.t1 AT3G17390 92.347 392 30 0 3 394 2 393 0.0 732
MS.gene28651.t1 AT2G36880 88.860 386 43 0 3 388 2 387 0.0 701
MS.gene28651.t1 AT2G36880 88.860 386 43 0 3 388 2 387 0.0 701

Find 142 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTAAGGTCCAAGTTTA+TGG 0.138584 7.2:+4951521 None:intergenic
TTTCTTAAGACAGCTGCTTA+TGG 0.284960 7.2:-4951483 MS.gene28651:CDS
TGGGTCAAAGGCATCAATTC+AGG 0.288293 7.2:+4952164 None:intergenic
AAGATTATCATTGATACTTA+TGG 0.306222 7.2:-4951810 MS.gene28651:CDS
CCTTCTGGCCGCTTTGTCAT+TGG 0.311751 7.2:-4951867 MS.gene28651:CDS
ATCTGGTCGCACAGCTTGTC+GGG 0.316863 7.2:+4952521 None:intergenic
CATTGATACTTATGGTGGTT+GGG 0.317021 7.2:-4951802 MS.gene28651:CDS
CTCATAGTCTACGTTGGCCT+TGG 0.319902 7.2:+4952391 None:intergenic
ACTAACATGGTCATGGTCTT+TGG 0.325220 7.2:-4952425 MS.gene28651:CDS
ATCTTCCACCTTAACCCTTC+TGG 0.339546 7.2:-4951882 MS.gene28651:CDS
ATCAATGATAATCTTTCTTC+CGG 0.346977 7.2:+4951818 None:intergenic
TCACAGGCAACCTTGCTGTC+AGG 0.350803 7.2:+4952461 None:intergenic
CCACTTCTGTCAACCTTGGT+TGG 0.360492 7.2:+4951744 None:intergenic
TGCTGTTGCCACCCCTCTTA+AGG 0.364997 7.2:+4951508 None:intergenic
CACTTCTGTCAACCTTGGTT+GGG 0.374639 7.2:+4951745 None:intergenic
AAGTACTTCTCGGGAATAAC+AGG 0.381664 7.2:+4951918 None:intergenic
GATATTGCTCAGGGTGTTCA+TGG 0.382094 7.2:-4952263 MS.gene28651:CDS
CATGTCCTTGCAACCAAACT+TGG 0.385708 7.2:-4952143 MS.gene28651:CDS
TCAGTCTTTGTTGACAGTTA+TGG 0.391107 7.2:-4951618 MS.gene28651:CDS
AAGTTTATGGTGATCATTCC+AGG 0.391766 7.2:+4951534 None:intergenic
CCATAAACTTGGACCTTAAG+AGG 0.398540 7.2:-4951521 MS.gene28651:CDS
CACGGTGGAGGTGCCTTCTC+AGG 0.402997 7.2:-4951774 MS.gene28651:CDS
GGAGGTTGGTGCTGGTGACC+AGG 0.407279 7.2:-4952219 MS.gene28651:CDS
CTTCTCATCCAAGTACTTCT+CGG 0.410892 7.2:+4951908 None:intergenic
GATCTGGTCGCACAGCTTGT+CGG 0.416769 7.2:+4952520 None:intergenic
AGGACAGTGTGGACACGAAC+TGG 0.417997 7.2:+4952014 None:intergenic
TTTGTTGACAGTTATGGAAC+TGG 0.419936 7.2:-4951612 MS.gene28651:CDS
TGAACACCCTGAGCAATATC+AGG 0.422249 7.2:+4952266 None:intergenic
GGTTGGGGTGCTCACGGTGG+AGG 0.425538 7.2:-4951786 MS.gene28651:CDS
GGTGACCAGGGTCACATGTT+TGG 0.425995 7.2:-4952206 MS.gene28651:CDS
ACCAACCTCCTCCGGTCGCT+TGG 0.426190 7.2:+4952232 None:intergenic
GGTTGGGTCCTTTCCTGAGA+AGG 0.428342 7.2:+4951761 None:intergenic
CAAAGCGGCCAGAAGGGTTA+AGG 0.434307 7.2:+4951874 None:intergenic
TGTTATTCCCGAGAAGTACT+TGG 0.435100 7.2:-4951916 MS.gene28651:CDS
CAAGTTTGGTTGCAAGGACA+TGG 0.438358 7.2:+4952144 None:intergenic
TCATTGATACTTATGGTGGT+TGG 0.441161 7.2:-4951803 MS.gene28651:CDS
ACAACTTCCCATGTGAAGTC+AGG 0.445873 7.2:+4951441 None:intergenic
GAGAATTTCGACTTCAGACC+TGG 0.446842 7.2:-4951552 MS.gene28651:CDS
CCTTGAGATCAGCAGCAATC+TGG 0.456986 7.2:+4951955 None:intergenic
TCTGGCCGCTTTGTCATTGG+TGG 0.458127 7.2:-4951864 MS.gene28651:CDS
GACCAAGACCTTGCATTTGT+CGG 0.464752 7.2:+4952307 None:intergenic
GTAACTTGTGTCTTGCCGTC+AGG 0.465566 7.2:+4952071 None:intergenic
GGTAAGACGAGAACCAAGTT+TGG 0.467187 7.2:+4952130 None:intergenic
CGACCGGAGGAGGTTGGTGC+TGG 0.472165 7.2:-4952227 MS.gene28651:CDS
ACAAAGACTGACAAAGGTTC+AGG 0.472926 7.2:+4951630 None:intergenic
CACAGGCAACCTTGCTGTCA+GGG 0.473889 7.2:+4952462 None:intergenic
TGCCGACAAATGCAAGGTCT+TGG 0.476488 7.2:-4952309 MS.gene28651:CDS
GAGGTTGGTGCTGGTGACCA+GGG 0.476524 7.2:-4952218 MS.gene28651:CDS
GCAGAGTCCTGATATTGCTC+AGG 0.479924 7.2:-4952273 MS.gene28651:CDS
CGAGCACTGCATCAGAGATC+TGG 0.482726 7.2:+4952504 None:intergenic
ATTTGAAGAATCTCCCTGTC+AGG 0.484553 7.2:+4951582 None:intergenic
CTGCTTATGGACACTTTGGA+AGG 0.487231 7.2:-4951470 MS.gene28651:CDS
AATCTTTCTTCCGGTGAGAC+CGG 0.488645 7.2:+4951827 None:intergenic
CTTACCGAGGTTAGGAAGAA+TGG 0.494148 7.2:-4952113 MS.gene28651:CDS
CGTGACACATGCCGCACCAT+TGG 0.494516 7.2:-4952359 MS.gene28651:CDS
ACAGCTGCTTATGGACACTT+TGG 0.494709 7.2:-4951474 MS.gene28651:CDS
TGGAATGATCACCATAAACT+TGG 0.495635 7.2:-4951532 MS.gene28651:CDS
GGATTCATCTCTGATGATGT+TGG 0.496804 7.2:-4952338 MS.gene28651:CDS
TTCTCATCCAAGTACTTCTC+GGG 0.498601 7.2:+4951909 None:intergenic
TTAAGAGGGGTGGCAACAGC+AGG 0.499577 7.2:-4951506 MS.gene28651:CDS
TGATTCAGATGTAAATAGAA+AGG 0.500218 7.2:+4952559 None:intergenic
TCACCAGCACCAACCTCCTC+CGG 0.500381 7.2:+4952224 None:intergenic
ACTGACAGTCTCGTCATGTT+GGG 0.502497 7.2:+4951983 None:intergenic
CCAGATTGCTGCTGATCTCA+AGG 0.503514 7.2:-4951955 MS.gene28651:CDS
GGGTCAAAGGCATCAATTCA+GGG 0.504436 7.2:+4952165 None:intergenic
GTTCTCGTCTTACCGAGGTT+AGG 0.505425 7.2:-4952121 MS.gene28651:CDS
TACTGACAGTCTCGTCATGT+TGG 0.516605 7.2:+4951982 None:intergenic
GGAAGAATGGTACCTGCGCT+TGG 0.516977 7.2:-4952100 MS.gene28651:CDS
TATGGTGGTTGGGGTGCTCA+CGG 0.517736 7.2:-4951792 MS.gene28651:CDS
ATTGATACTTATGGTGGTTG+GGG 0.520128 7.2:-4951801 MS.gene28651:CDS
GCTCGACGCTTGTCTTGAGC+AGG 0.520666 7.2:-4952486 MS.gene28651:CDS
GGTGAGACCGGCATCACCAT+GGG 0.521562 7.2:+4951839 None:intergenic
GAAGTGGTGCCTATGTTGTA+AGG 0.524030 7.2:-4951728 MS.gene28651:CDS
AGTCTTGGTGCATGTCTCAC+AGG 0.525417 7.2:+4952445 None:intergenic
ACCGTTGGCCACGATACTCT+TGG 0.527077 7.2:+4951698 None:intergenic
TGAGGCTTCTCCCACTTGAG+TGG 0.529340 7.2:+4951414 None:intergenic
CATGGTGATGCCGGTCTCAC+CGG 0.530989 7.2:-4951837 MS.gene28651:CDS
CTTCACCAAGCGACCGGAGG+AGG 0.532058 7.2:-4952237 MS.gene28651:CDS
GTTCAAGTTTCATACGCCAT+TGG 0.533659 7.2:-4951657 MS.gene28651:CDS
CAACACAATTCTTAAGCTTG+AGG 0.534059 7.2:+4951396 None:intergenic
TGGTGCCTATGTTGTAAGGC+AGG 0.534092 7.2:-4951724 MS.gene28651:CDS
GGTGGTCCCCATGGTGATGC+CGG 0.534409 7.2:-4951846 MS.gene28651:CDS
GGGATGATCCTGACTTCACA+TGG 0.535224 7.2:-4951449 MS.gene28651:CDS
GACCATGACCATGTTAGTCT+TGG 0.539549 7.2:+4952430 None:intergenic
CCAATGACAAAGCGGCCAGA+AGG 0.541172 7.2:+4951867 None:intergenic
ACCAAGCGACCGGAGGAGGT+TGG 0.554338 7.2:-4952233 MS.gene28651:CDS
GTTGCAAGGACATGGGTCAA+AGG 0.556162 7.2:+4952152 None:intergenic
GGCTGCCTGCCTTACAACAT+AGG 0.558120 7.2:+4951719 None:intergenic
TGGACACTTCACCAAGCGAC+CGG 0.560904 7.2:-4952243 MS.gene28651:CDS
GGCACCACTTCTGTCAACCT+TGG 0.561156 7.2:+4951740 None:intergenic
CATAAACTTGGACCTTAAGA+GGG 0.561791 7.2:-4951520 MS.gene28651:CDS
GAACTGGAAAGATTCCTGAC+AGG 0.562498 7.2:-4951596 MS.gene28651:CDS
CTACAATGAGAACGGTGCTA+TGG 0.563792 7.2:-4952039 MS.gene28651:CDS
TTTGTCATTGGTGGTCCCCA+TGG 0.564647 7.2:-4951855 MS.gene28651:CDS
CGGTGAGACCGGCATCACCA+TGG 0.572738 7.2:+4951838 None:intergenic
GGAGATTCTTCAAATTGTGA+AGG 0.577415 7.2:-4951574 MS.gene28651:CDS
ATTATCATTGATACTTATGG+TGG 0.577853 7.2:-4951807 MS.gene28651:CDS
CAATGACAAAGCGGCCAGAA+GGG 0.582473 7.2:+4951868 None:intergenic
GCCAAGAGTATCGTGGCCAA+CGG 0.582814 7.2:-4951699 MS.gene28651:CDS
CGTCATGTTGGGTAGAAATG+AGG 0.582931 7.2:+4951994 None:intergenic
GTCAGGTCTCAACCAAGCGC+AGG 0.588779 7.2:+4952088 None:intergenic
GAGAACCAAGTTTGGTTGCA+AGG 0.599192 7.2:+4952138 None:intergenic
AACTTGGACCTTAAGAGGGG+TGG 0.600140 7.2:-4951516 MS.gene28651:CDS
TGCTTATGGACACTTTGGAA+GGG 0.601939 7.2:-4951469 MS.gene28651:CDS
AAGTTGTGAAACCACTCAAG+TGG 0.610837 7.2:-4951425 MS.gene28651:CDS
CCAACCAAGGTTGACAGAAG+TGG 0.610892 7.2:-4951744 MS.gene28651:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.616557 7.2:-4951769 MS.gene28651:CDS
AAGTTTGGTTGCAAGGACAT+GGG 0.617157 7.2:+4952145 None:intergenic
CAGAGTCCTGATATTGCTCA+GGG 0.622287 7.2:-4952272 MS.gene28651:CDS
GCATCTGCGAGCAAGACCGT+TGG 0.622592 7.2:+4951683 None:intergenic
TGAGCAGGACCCTGACAGCA+AGG 0.623817 7.2:-4952471 MS.gene28651:CDS
AGCGGCCAGAAGGGTTAAGG+TGG 0.629636 7.2:+4951877 None:intergenic
CTGTCAACAAAGACTGACAA+AGG 0.630556 7.2:+4951624 None:intergenic
TCTGGTCGCACAGCTTGTCG+GGG 0.635896 7.2:+4952522 None:intergenic
GTTCTCATTGTAGTACTCGA+TGG 0.637222 7.2:+4952049 None:intergenic
CAAAGGTTCAGGCACACCAA+TGG 0.637977 7.2:+4951641 None:intergenic
CACCAAGACTAACATGGTCA+TGG 0.639561 7.2:-4952432 MS.gene28651:CDS
TCTTGATGCCGACAAATGCA+AGG 0.639773 7.2:-4952315 MS.gene28651:CDS
AACTGGAAAGATTCCTGACA+GGG 0.640690 7.2:-4951595 MS.gene28651:CDS
ATCATCAGAGATGAATCCAA+TGG 0.640935 7.2:+4952343 None:intergenic
CGTAACCAAACATGTGACCC+TGG 0.642531 7.2:+4952201 None:intergenic
GGTGGTTGGGGTGCTCACGG+TGG 0.644744 7.2:-4951789 MS.gene28651:CDS
AGTTGTGAAACCACTCAAGT+GGG 0.645098 7.2:-4951424 MS.gene28651:CDS
ATCGAGTACTACAATGAGAA+CGG 0.645228 7.2:-4952047 MS.gene28651:CDS
TACATCTGAATCAGTGAACG+AGG 0.649849 7.2:-4952549 MS.gene28651:CDS
CTCAGGAAAGGACCCAACCA+AGG 0.650893 7.2:-4951757 MS.gene28651:CDS
ACTTGGTTCTCGTCTTACCG+AGG 0.654033 7.2:-4952126 MS.gene28651:CDS
CAGAGATGAATCCAATGGTG+CGG 0.655738 7.2:+4952348 None:intergenic
GGTCAAAGGCATCAATTCAG+GGG 0.658957 7.2:+4952166 None:intergenic
TGCGCTTGGTTGAGACCTGA+CGG 0.663059 7.2:-4952086 MS.gene28651:CDS
GGTACCATTCTTCCTAACCT+CGG 0.672851 7.2:+4952109 None:intergenic
GATCTTCTCATAGTCTACGT+TGG 0.675200 7.2:+4952385 None:intergenic
ACACTTCACCAAGCGACCGG+AGG 0.687239 7.2:-4952240 MS.gene28651:CDS
GGGGACCACCAATGACAAAG+CGG 0.696729 7.2:+4951859 None:intergenic
GGATGATCCTGACTTCACAT+GGG 0.698633 7.2:-4951448 MS.gene28651:CDS
GCAGGCAGCCAAGAGTATCG+TGG 0.702391 7.2:-4951706 MS.gene28651:CDS
CTTTGGAGAAATAACAACCA+AGG 0.702532 7.2:-4952408 MS.gene28651:CDS
ATAAACTTGGACCTTAAGAG+GGG 0.707857 7.2:-4951519 MS.gene28651:CDS
GTGAGACCGGCATCACCATG+GGG 0.708643 7.2:+4951840 None:intergenic
ACATCTGAATCAGTGAACGA+GGG 0.713919 7.2:-4952548 MS.gene28651:CDS
GACATGCACCAAGACTAACA+TGG 0.727763 7.2:-4952438 MS.gene28651:CDS
GGGTAGAAATGAGGACAGTG+TGG 0.746656 7.2:+4952003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTATCATTGATACTTA+TGG - chr7.2:4952166-4952185 MS.gene28651:CDS 20.0%
! ATCAATGATAATCTTTCTTC+CGG + chr7.2:4952161-4952180 None:intergenic 25.0%
! ATTATCATTGATACTTATGG+TGG - chr7.2:4952169-4952188 MS.gene28651:CDS 25.0%
! TGATTCAGATGTAAATAGAA+AGG + chr7.2:4951420-4951439 None:intergenic 25.0%
AAGTTTATGGTGATCATTCC+AGG + chr7.2:4952445-4952464 None:intergenic 35.0%
ATAAACTTGGACCTTAAGAG+GGG - chr7.2:4952457-4952476 MS.gene28651:CDS 35.0%
ATCATCAGAGATGAATCCAA+TGG + chr7.2:4951636-4951655 None:intergenic 35.0%
ATCGAGTACTACAATGAGAA+CGG - chr7.2:4951929-4951948 MS.gene28651:CDS 35.0%
ATTGATACTTATGGTGGTTG+GGG - chr7.2:4952175-4952194 MS.gene28651:CDS 35.0%
CATAAACTTGGACCTTAAGA+GGG - chr7.2:4952456-4952475 MS.gene28651:CDS 35.0%
CATTGATACTTATGGTGGTT+GGG - chr7.2:4952174-4952193 MS.gene28651:CDS 35.0%
GGAGATTCTTCAAATTGTGA+AGG - chr7.2:4952402-4952421 MS.gene28651:CDS 35.0%
TCAGTCTTTGTTGACAGTTA+TGG - chr7.2:4952358-4952377 MS.gene28651:CDS 35.0%
TCATTGATACTTATGGTGGT+TGG - chr7.2:4952173-4952192 MS.gene28651:CDS 35.0%
TGGAATGATCACCATAAACT+TGG - chr7.2:4952444-4952463 MS.gene28651:CDS 35.0%
TTTCTTAAGACAGCTGCTTA+TGG - chr7.2:4952493-4952512 MS.gene28651:CDS 35.0%
TTTGTTGACAGTTATGGAAC+TGG - chr7.2:4952364-4952383 MS.gene28651:CDS 35.0%
! CTTTGGAGAAATAACAACCA+AGG - chr7.2:4951568-4951587 MS.gene28651:CDS 35.0%
AACTGGAAAGATTCCTGACA+GGG - chr7.2:4952381-4952400 MS.gene28651:CDS 40.0%
AAGTACTTCTCGGGAATAAC+AGG + chr7.2:4952061-4952080 None:intergenic 40.0%
AAGTTGTGAAACCACTCAAG+TGG - chr7.2:4952551-4952570 MS.gene28651:CDS 40.0%
AAGTTTGGTTGCAAGGACAT+GGG + chr7.2:4951834-4951853 None:intergenic 40.0%
ACAAAGACTGACAAAGGTTC+AGG + chr7.2:4952349-4952368 None:intergenic 40.0%
ACATCTGAATCAGTGAACGA+GGG - chr7.2:4951428-4951447 MS.gene28651:CDS 40.0%
ACTAACATGGTCATGGTCTT+TGG - chr7.2:4951551-4951570 MS.gene28651:CDS 40.0%
AGTTGTGAAACCACTCAAGT+GGG - chr7.2:4952552-4952571 MS.gene28651:CDS 40.0%
ATTTGAAGAATCTCCCTGTC+AGG + chr7.2:4952397-4952416 None:intergenic 40.0%
CCATAAACTTGGACCTTAAG+AGG - chr7.2:4952455-4952474 MS.gene28651:CDS 40.0%
CCTCTTAAGGTCCAAGTTTA+TGG + chr7.2:4952458-4952477 None:intergenic 40.0%
CTGTCAACAAAGACTGACAA+AGG + chr7.2:4952355-4952374 None:intergenic 40.0%
CTTCTCATCCAAGTACTTCT+CGG + chr7.2:4952071-4952090 None:intergenic 40.0%
GATCTTCTCATAGTCTACGT+TGG + chr7.2:4951594-4951613 None:intergenic 40.0%
GTTCTCATTGTAGTACTCGA+TGG + chr7.2:4951930-4951949 None:intergenic 40.0%
TACATCTGAATCAGTGAACG+AGG - chr7.2:4951427-4951446 MS.gene28651:CDS 40.0%
TTCTCATCCAAGTACTTCTC+GGG + chr7.2:4952070-4952089 None:intergenic 40.0%
! GGATTCATCTCTGATGATGT+TGG - chr7.2:4951638-4951657 MS.gene28651:CDS 40.0%
! GTTCAAGTTTCATACGCCAT+TGG - chr7.2:4952319-4952338 MS.gene28651:CDS 40.0%
! TGCTTATGGACACTTTGGAA+GGG - chr7.2:4952507-4952526 MS.gene28651:CDS 40.0%
!! TGTTATTCCCGAGAAGTACT+TGG - chr7.2:4952060-4952079 MS.gene28651:CDS 40.0%
AATCTTTCTTCCGGTGAGAC+CGG + chr7.2:4952152-4952171 None:intergenic 45.0%
ACAACTTCCCATGTGAAGTC+AGG + chr7.2:4952538-4952557 None:intergenic 45.0%
ACAGCTGCTTATGGACACTT+TGG - chr7.2:4952502-4952521 MS.gene28651:CDS 45.0%
ACTGACAGTCTCGTCATGTT+GGG + chr7.2:4951996-4952015 None:intergenic 45.0%
ATCTTCCACCTTAACCCTTC+TGG - chr7.2:4952094-4952113 MS.gene28651:CDS 45.0%
CAAGTTTGGTTGCAAGGACA+TGG + chr7.2:4951835-4951854 None:intergenic 45.0%
CACCAAGACTAACATGGTCA+TGG - chr7.2:4951544-4951563 MS.gene28651:CDS 45.0%
CACTTCTGTCAACCTTGGTT+GGG + chr7.2:4952234-4952253 None:intergenic 45.0%
CAGAGATGAATCCAATGGTG+CGG + chr7.2:4951631-4951650 None:intergenic 45.0%
CAGAGTCCTGATATTGCTCA+GGG - chr7.2:4951704-4951723 MS.gene28651:CDS 45.0%
CATGTCCTTGCAACCAAACT+TGG - chr7.2:4951833-4951852 MS.gene28651:CDS 45.0%
CGTCATGTTGGGTAGAAATG+AGG + chr7.2:4951985-4952004 None:intergenic 45.0%
CTGCTTATGGACACTTTGGA+AGG - chr7.2:4952506-4952525 MS.gene28651:CDS 45.0%
CTTACCGAGGTTAGGAAGAA+TGG - chr7.2:4951863-4951882 MS.gene28651:CDS 45.0%
GAACTGGAAAGATTCCTGAC+AGG - chr7.2:4952380-4952399 MS.gene28651:CDS 45.0%
GAAGTGGTGCCTATGTTGTA+AGG - chr7.2:4952248-4952267 MS.gene28651:CDS 45.0%
GACATGCACCAAGACTAACA+TGG - chr7.2:4951538-4951557 MS.gene28651:CDS 45.0%
GACCAAGACCTTGCATTTGT+CGG + chr7.2:4951672-4951691 None:intergenic 45.0%
GAGAACCAAGTTTGGTTGCA+AGG + chr7.2:4951841-4951860 None:intergenic 45.0%
GAGAATTTCGACTTCAGACC+TGG - chr7.2:4952424-4952443 MS.gene28651:CDS 45.0%
GGATGATCCTGACTTCACAT+GGG - chr7.2:4952528-4952547 MS.gene28651:CDS 45.0%
GGTAAGACGAGAACCAAGTT+TGG + chr7.2:4951849-4951868 None:intergenic 45.0%
GGTACCATTCTTCCTAACCT+CGG + chr7.2:4951870-4951889 None:intergenic 45.0%
TACTGACAGTCTCGTCATGT+TGG + chr7.2:4951997-4952016 None:intergenic 45.0%
TCTTGATGCCGACAAATGCA+AGG - chr7.2:4951661-4951680 MS.gene28651:CDS 45.0%
TGAACACCCTGAGCAATATC+AGG + chr7.2:4951713-4951732 None:intergenic 45.0%
! CTACAATGAGAACGGTGCTA+TGG - chr7.2:4951937-4951956 MS.gene28651:CDS 45.0%
! GACCATGACCATGTTAGTCT+TGG + chr7.2:4951549-4951568 None:intergenic 45.0%
! GATATTGCTCAGGGTGTTCA+TGG - chr7.2:4951713-4951732 MS.gene28651:CDS 45.0%
!! GGGTCAAAGGCATCAATTCA+GGG + chr7.2:4951814-4951833 None:intergenic 45.0%
!! GGTCAAAGGCATCAATTCAG+GGG + chr7.2:4951813-4951832 None:intergenic 45.0%
!! TGGGTCAAAGGCATCAATTC+AGG + chr7.2:4951815-4951834 None:intergenic 45.0%
AACTTGGACCTTAAGAGGGG+TGG - chr7.2:4952460-4952479 MS.gene28651:CDS 50.0%
CAAAGGTTCAGGCACACCAA+TGG + chr7.2:4952338-4952357 None:intergenic 50.0%
CAATGACAAAGCGGCCAGAA+GGG + chr7.2:4952111-4952130 None:intergenic 50.0%
CCAACCAAGGTTGACAGAAG+TGG - chr7.2:4952232-4952251 MS.gene28651:CDS 50.0%
CCACTTCTGTCAACCTTGGT+TGG + chr7.2:4952235-4952254 None:intergenic 50.0%
CCAGATTGCTGCTGATCTCA+AGG - chr7.2:4952021-4952040 MS.gene28651:CDS 50.0%
CCTTGAGATCAGCAGCAATC+TGG + chr7.2:4952024-4952043 None:intergenic 50.0%
CGTAACCAAACATGTGACCC+TGG + chr7.2:4951778-4951797 None:intergenic 50.0%
GCAGAGTCCTGATATTGCTC+AGG - chr7.2:4951703-4951722 MS.gene28651:CDS 50.0%
GGGATGATCCTGACTTCACA+TGG - chr7.2:4952527-4952546 MS.gene28651:CDS 50.0%
GGGTAGAAATGAGGACAGTG+TGG + chr7.2:4951976-4951995 None:intergenic 50.0%
GTTCTCGTCTTACCGAGGTT+AGG - chr7.2:4951855-4951874 MS.gene28651:CDS 50.0%
GTTGCAAGGACATGGGTCAA+AGG + chr7.2:4951827-4951846 None:intergenic 50.0%
TGCCGACAAATGCAAGGTCT+TGG - chr7.2:4951667-4951686 MS.gene28651:CDS 50.0%
TGGTGCCTATGTTGTAAGGC+AGG - chr7.2:4952252-4952271 MS.gene28651:CDS 50.0%
! ACTTGGTTCTCGTCTTACCG+AGG - chr7.2:4951850-4951869 MS.gene28651:CDS 50.0%
! AGTCTTGGTGCATGTCTCAC+AGG + chr7.2:4951534-4951553 None:intergenic 50.0%
! CTCATAGTCTACGTTGGCCT+TGG + chr7.2:4951588-4951607 None:intergenic 50.0%
! GTAACTTGTGTCTTGCCGTC+AGG + chr7.2:4951908-4951927 None:intergenic 50.0%
! TTTGTCATTGGTGGTCCCCA+TGG - chr7.2:4952121-4952140 MS.gene28651:CDS 50.0%
ACCGTTGGCCACGATACTCT+TGG + chr7.2:4952281-4952300 None:intergenic 55.0%
AGGACAGTGTGGACACGAAC+TGG + chr7.2:4951965-4951984 None:intergenic 55.0%
ATCTGGTCGCACAGCTTGTC+GGG + chr7.2:4951458-4951477 None:intergenic 55.0%
CAAAGCGGCCAGAAGGGTTA+AGG + chr7.2:4952105-4952124 None:intergenic 55.0%
CCAATGACAAAGCGGCCAGA+AGG + chr7.2:4952112-4952131 None:intergenic 55.0%
CTCAGGAAAGGACCCAACCA+AGG - chr7.2:4952219-4952238 MS.gene28651:CDS 55.0%
GATCTGGTCGCACAGCTTGT+CGG + chr7.2:4951459-4951478 None:intergenic 55.0%
GGAAGAATGGTACCTGCGCT+TGG - chr7.2:4951876-4951895 MS.gene28651:CDS 55.0%
GGCACCACTTCTGTCAACCT+TGG + chr7.2:4952239-4952258 None:intergenic 55.0%
GGCTGCCTGCCTTACAACAT+AGG + chr7.2:4952260-4952279 None:intergenic 55.0%
GGGGACCACCAATGACAAAG+CGG + chr7.2:4952120-4952139 None:intergenic 55.0%
GGTGACCAGGGTCACATGTT+TGG - chr7.2:4951770-4951789 MS.gene28651:CDS 55.0%
GGTTGGGTCCTTTCCTGAGA+AGG + chr7.2:4952218-4952237 None:intergenic 55.0%
TGAGGCTTCTCCCACTTGAG+TGG + chr7.2:4952565-4952584 None:intergenic 55.0%
TGCGCTTGGTTGAGACCTGA+CGG - chr7.2:4951890-4951909 MS.gene28651:CDS 55.0%
TGCTGTTGCCACCCCTCTTA+AGG + chr7.2:4952471-4952490 None:intergenic 55.0%
TGGACACTTCACCAAGCGAC+CGG - chr7.2:4951733-4951752 MS.gene28651:CDS 55.0%
TTAAGAGGGGTGGCAACAGC+AGG - chr7.2:4952470-4952489 MS.gene28651:CDS 55.0%
! CACAGGCAACCTTGCTGTCA+GGG + chr7.2:4951517-4951536 None:intergenic 55.0%
! CCTTCTGGCCGCTTTGTCAT+TGG - chr7.2:4952109-4952128 MS.gene28651:CDS 55.0%
! CGAGCACTGCATCAGAGATC+TGG + chr7.2:4951475-4951494 None:intergenic 55.0%
! TATGGTGGTTGGGGTGCTCA+CGG - chr7.2:4952184-4952203 MS.gene28651:CDS 55.0%
! TCACAGGCAACCTTGCTGTC+AGG + chr7.2:4951518-4951537 None:intergenic 55.0%
! TCTGGCCGCTTTGTCATTGG+TGG - chr7.2:4952112-4952131 MS.gene28651:CDS 55.0%
!! GCCAAGAGTATCGTGGCCAA+CGG - chr7.2:4952277-4952296 MS.gene28651:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr7.2:4952207-4952226 MS.gene28651:CDS 55.0%
ACACTTCACCAAGCGACCGG+AGG - chr7.2:4951736-4951755 MS.gene28651:CDS 60.0%
AGCGGCCAGAAGGGTTAAGG+TGG + chr7.2:4952102-4952121 None:intergenic 60.0%
CGTGACACATGCCGCACCAT+TGG - chr7.2:4951617-4951636 MS.gene28651:CDS 60.0%
GCATCTGCGAGCAAGACCGT+TGG + chr7.2:4952296-4952315 None:intergenic 60.0%
GCTCGACGCTTGTCTTGAGC+AGG - chr7.2:4951490-4951509 MS.gene28651:CDS 60.0%
GGTGAGACCGGCATCACCAT+GGG + chr7.2:4952140-4952159 None:intergenic 60.0%
GTCAGGTCTCAACCAAGCGC+AGG + chr7.2:4951891-4951910 None:intergenic 60.0%
GTGAGACCGGCATCACCATG+GGG + chr7.2:4952139-4952158 None:intergenic 60.0%
TCACCAGCACCAACCTCCTC+CGG + chr7.2:4951755-4951774 None:intergenic 60.0%
TCTGGTCGCACAGCTTGTCG+GGG + chr7.2:4951457-4951476 None:intergenic 60.0%
TGAGCAGGACCCTGACAGCA+AGG - chr7.2:4951505-4951524 MS.gene28651:CDS 60.0%
! CATGGTGATGCCGGTCTCAC+CGG - chr7.2:4952139-4952158 MS.gene28651:CDS 60.0%
!! GAGGTTGGTGCTGGTGACCA+GGG - chr7.2:4951758-4951777 MS.gene28651:CDS 60.0%
!! GCAGGCAGCCAAGAGTATCG+TGG - chr7.2:4952270-4952289 MS.gene28651:CDS 60.0%
ACCAACCTCCTCCGGTCGCT+TGG + chr7.2:4951747-4951766 None:intergenic 65.0%
ACCAAGCGACCGGAGGAGGT+TGG - chr7.2:4951743-4951762 MS.gene28651:CDS 65.0%
CGGTGAGACCGGCATCACCA+TGG + chr7.2:4952141-4952160 None:intergenic 65.0%
CTTCACCAAGCGACCGGAGG+AGG - chr7.2:4951739-4951758 MS.gene28651:CDS 65.0%
! GGTGGTCCCCATGGTGATGC+CGG - chr7.2:4952130-4952149 MS.gene28651:CDS 65.0%
!! CACGGTGGAGGTGCCTTCTC+AGG - chr7.2:4952202-4952221 MS.gene28651:CDS 65.0%
!! GGAGGTTGGTGCTGGTGACC+AGG - chr7.2:4951757-4951776 MS.gene28651:CDS 65.0%
! GGTGGTTGGGGTGCTCACGG+TGG - chr7.2:4952187-4952206 MS.gene28651:CDS 70.0%
! GGTTGGGGTGCTCACGGTGG+AGG - chr7.2:4952190-4952209 MS.gene28651:CDS 70.0%
!! CGACCGGAGGAGGTTGGTGC+TGG - chr7.2:4951749-4951768 MS.gene28651:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4951407 4952591 4951407 ID=MS.gene28651
chr7.2 mRNA 4951407 4952591 4951407 ID=MS.gene28651.t1;Parent=MS.gene28651
chr7.2 exon 4951407 4952591 4951407 ID=MS.gene28651.t1.exon1;Parent=MS.gene28651.t1
chr7.2 CDS 4951407 4952591 4951407 ID=cds.MS.gene28651.t1;Parent=MS.gene28651.t1
Gene Sequence

>MS.gene28651

ATGGCGGAAACCTTTCTATTTACATCTGAATCAGTGAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTGCTCGACGCTTGTCTTGAGCAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGAGAAATAACAACCAAGGCCAACGTAGACTATGAGAAGATCGTTCGTGACACATGCCGCACCATTGGATTCATCTCTGATGATGTTGGTCTTGATGCCGACAAATGCAAGGTCTTGGTCAACATTGAGCAGCAGAGTCCTGATATTGCTCAGGGTGTTCATGGACACTTCACCAAGCGACCGGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGTTACGCTACTGATGAAACCCCTGAATTGATGCCTTTGACCCATGTCCTTGCAACCAAACTTGGTTCTCGTCTTACCGAGGTTAGGAAGAATGGTACCTGCGCTTGGTTGAGACCTGACGGCAAGACACAAGTTACCATCGAGTACTACAATGAGAACGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCTACCCAACATGACGAGACTGTCAGTAATGACCAGATTGCTGCTGATCTCAAGGAACATGTTATCAAGCCTGTTATTCCCGAGAAGTACTTGGATGAGAAGACAATCTTCCACCTTAACCCTTCTGGCCGCTTTGTCATTGGTGGTCCCCATGGTGATGCCGGTCTCACCGGAAGAAAGATTATCATTGATACTTATGGTGGTTGGGGTGCTCACGGTGGAGGTGCCTTCTCAGGAAAGGACCCAACCAAGGTTGACAGAAGTGGTGCCTATGTTGTAAGGCAGGCAGCCAAGAGTATCGTGGCCAACGGTCTTGCTCGCAGATGCATTGTTCAAGTTTCATACGCCATTGGTGTGCCTGAACCTTTGTCAGTCTTTGTTGACAGTTATGGAACTGGAAAGATTCCTGACAGGGAGATTCTTCAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATAAACTTGGACCTTAAGAGGGGTGGCAACAGCAGGTTTCTTAAGACAGCTGCTTATGGACACTTTGGAAGGGATGATCCTGACTTCACATGGGAAGTTGTGAAACCACTCAAGTGGGAGAAGCCTCAAGCTTAA
Protein sequence

>MS.gene28651.t1

MAETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPELMPLTHVLATKLGSRLTEVRKNGTCAWLRPDGKTQVTIEYYNENGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA